Multiple sequence alignment - TraesCS7A01G368800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G368800 chr7A 100.000 2444 0 0 1 2444 542626366 542628809 0.000000e+00 4514.0
1 TraesCS7A01G368800 chr7B 87.755 735 35 23 475 1166 479984019 479983297 0.000000e+00 808.0
2 TraesCS7A01G368800 chr7B 86.998 423 35 6 1284 1704 479983133 479982729 2.210000e-125 459.0
3 TraesCS7A01G368800 chr7B 88.235 119 5 3 323 441 479995665 479995556 1.520000e-27 134.0
4 TraesCS7A01G368800 chr7B 94.737 38 1 1 1199 1236 143179586 143179550 9.440000e-05 58.4
5 TraesCS7A01G368800 chr4B 81.527 655 111 10 1789 2440 545039031 545038384 4.630000e-147 531.0
6 TraesCS7A01G368800 chr4B 90.438 251 22 2 3 253 60555862 60555614 1.810000e-86 329.0
7 TraesCS7A01G368800 chr4B 77.720 579 93 27 1885 2444 572228025 572227464 3.030000e-84 322.0
8 TraesCS7A01G368800 chr4B 75.618 566 118 17 1873 2424 299526733 299526174 1.860000e-66 263.0
9 TraesCS7A01G368800 chr4B 94.444 36 2 0 1201 1236 417133582 417133617 3.390000e-04 56.5
10 TraesCS7A01G368800 chr6D 81.633 637 107 9 1789 2422 279440 280069 1.000000e-143 520.0
11 TraesCS7A01G368800 chr6D 92.490 253 18 1 1 252 200610743 200610995 6.420000e-96 361.0
12 TraesCS7A01G368800 chr6D 81.928 249 40 5 1801 2046 33297567 33297321 3.190000e-49 206.0
13 TraesCS7A01G368800 chr7D 86.758 438 57 1 1764 2201 458149242 458148806 1.020000e-133 486.0
14 TraesCS7A01G368800 chr7D 89.433 388 21 7 834 1208 458156988 458156608 2.840000e-129 472.0
15 TraesCS7A01G368800 chr7D 87.761 335 9 6 487 797 458157757 458157431 1.790000e-96 363.0
16 TraesCS7A01G368800 chr7D 79.487 507 93 10 1937 2440 595786874 595786376 1.390000e-92 350.0
17 TraesCS7A01G368800 chr7D 88.716 257 18 3 1284 1538 458156605 458156358 1.100000e-78 303.0
18 TraesCS7A01G368800 chr7D 83.730 252 19 7 253 490 458158311 458158068 4.090000e-53 219.0
19 TraesCS7A01G368800 chr5B 80.186 646 111 15 1790 2427 297797289 297797925 3.680000e-128 468.0
20 TraesCS7A01G368800 chr5B 73.694 536 96 32 1911 2429 551320982 551321489 1.500000e-37 167.0
21 TraesCS7A01G368800 chr5B 74.255 369 75 12 1793 2160 387397073 387397422 1.180000e-28 137.0
22 TraesCS7A01G368800 chr6A 79.358 654 117 12 1794 2444 552292346 552291708 6.200000e-121 444.0
23 TraesCS7A01G368800 chr6A 82.143 252 40 5 1798 2046 38095593 38095344 6.850000e-51 211.0
24 TraesCS7A01G368800 chr6A 100.000 33 0 0 1204 1236 39864171 39864203 7.300000e-06 62.1
25 TraesCS7A01G368800 chr6A 100.000 31 0 0 1206 1236 58316750 58316780 9.440000e-05 58.4
26 TraesCS7A01G368800 chr5A 79.626 589 107 11 1859 2444 631356998 631357576 6.290000e-111 411.0
27 TraesCS7A01G368800 chr5A 100.000 33 0 0 1204 1236 406022928 406022960 7.300000e-06 62.1
28 TraesCS7A01G368800 chr5A 80.000 95 10 4 1199 1285 419210217 419210124 7.300000e-06 62.1
29 TraesCS7A01G368800 chr2D 91.600 250 20 1 1 250 159848894 159849142 6.470000e-91 344.0
30 TraesCS7A01G368800 chr2D 88.679 265 28 2 1 263 70675334 70675070 3.030000e-84 322.0
31 TraesCS7A01G368800 chr2D 89.370 254 26 1 1 253 275227727 275227980 3.920000e-83 318.0
32 TraesCS7A01G368800 chr2D 88.636 264 26 3 1 263 543458055 543457795 3.920000e-83 318.0
33 TraesCS7A01G368800 chr2D 82.051 78 4 5 1207 1284 37929019 37928952 9.440000e-05 58.4
34 TraesCS7A01G368800 chr5D 90.157 254 24 1 1 253 438192767 438192514 1.810000e-86 329.0
35 TraesCS7A01G368800 chr5D 89.328 253 26 1 1 253 256484035 256483784 1.410000e-82 316.0
36 TraesCS7A01G368800 chr2B 89.494 257 25 2 1 256 109021965 109021710 8.430000e-85 324.0
37 TraesCS7A01G368800 chr3D 76.805 457 78 21 1970 2410 310179897 310179453 5.260000e-57 231.0
38 TraesCS7A01G368800 chr3D 94.872 39 2 0 1250 1288 357643067 357643029 7.300000e-06 62.1
39 TraesCS7A01G368800 chr3D 100.000 29 0 0 1259 1287 591183031 591183003 1.000000e-03 54.7
40 TraesCS7A01G368800 chr3B 76.902 368 68 13 1793 2152 687494544 687494902 2.480000e-45 193.0
41 TraesCS7A01G368800 chr1A 88.000 100 7 4 1006 1101 576059449 576059351 1.990000e-21 113.0
42 TraesCS7A01G368800 chr2A 97.059 34 1 0 1203 1236 54877086 54877119 9.440000e-05 58.4
43 TraesCS7A01G368800 chr2A 94.595 37 1 1 1207 1243 551720970 551721005 3.390000e-04 56.5
44 TraesCS7A01G368800 chr4A 96.875 32 1 0 1253 1284 502905970 502906001 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G368800 chr7A 542626366 542628809 2443 False 4514.00 4514 100.0000 1 2444 1 chr7A.!!$F1 2443
1 TraesCS7A01G368800 chr7B 479982729 479984019 1290 True 633.50 808 87.3765 475 1704 2 chr7B.!!$R3 1229
2 TraesCS7A01G368800 chr4B 545038384 545039031 647 True 531.00 531 81.5270 1789 2440 1 chr4B.!!$R3 651
3 TraesCS7A01G368800 chr4B 572227464 572228025 561 True 322.00 322 77.7200 1885 2444 1 chr4B.!!$R4 559
4 TraesCS7A01G368800 chr4B 299526174 299526733 559 True 263.00 263 75.6180 1873 2424 1 chr4B.!!$R2 551
5 TraesCS7A01G368800 chr6D 279440 280069 629 False 520.00 520 81.6330 1789 2422 1 chr6D.!!$F1 633
6 TraesCS7A01G368800 chr7D 458156358 458158311 1953 True 339.25 472 87.4100 253 1538 4 chr7D.!!$R3 1285
7 TraesCS7A01G368800 chr5B 297797289 297797925 636 False 468.00 468 80.1860 1790 2427 1 chr5B.!!$F1 637
8 TraesCS7A01G368800 chr6A 552291708 552292346 638 True 444.00 444 79.3580 1794 2444 1 chr6A.!!$R2 650
9 TraesCS7A01G368800 chr5A 631356998 631357576 578 False 411.00 411 79.6260 1859 2444 1 chr5A.!!$F2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.179116 TCGAGAGGTAGGAGACGACG 60.179 60.0 0.0 0.0 36.74 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 2854 0.036022 TGTTGCGGTGATGATGGTGA 59.964 50.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.529780 GATCGAGAGGTAGGAGACGA 57.470 55.000 0.00 0.00 0.00 4.20
20 21 2.137523 GATCGAGAGGTAGGAGACGAC 58.862 57.143 0.00 0.00 34.90 4.34
21 22 0.179116 TCGAGAGGTAGGAGACGACG 60.179 60.000 0.00 0.00 36.74 5.12
22 23 0.179116 CGAGAGGTAGGAGACGACGA 60.179 60.000 0.00 0.00 36.74 4.20
23 24 1.289276 GAGAGGTAGGAGACGACGAC 58.711 60.000 0.00 0.00 36.74 4.34
24 25 0.459934 AGAGGTAGGAGACGACGACG 60.460 60.000 5.58 5.58 45.75 5.12
25 26 1.427592 GAGGTAGGAGACGACGACGG 61.428 65.000 12.58 0.00 44.46 4.79
38 39 3.414700 GACGGCAAGTCGCACTGG 61.415 66.667 0.00 0.00 45.17 4.00
39 40 4.988598 ACGGCAAGTCGCACTGGG 62.989 66.667 0.00 0.00 45.17 4.45
41 42 4.643387 GGCAAGTCGCACTGGGGT 62.643 66.667 0.00 0.00 45.17 4.95
42 43 2.594592 GCAAGTCGCACTGGGGTT 60.595 61.111 0.00 0.00 41.79 4.11
43 44 2.617274 GCAAGTCGCACTGGGGTTC 61.617 63.158 0.00 0.00 41.79 3.62
44 45 2.030562 AAGTCGCACTGGGGTTCG 59.969 61.111 0.00 0.00 33.69 3.95
45 46 2.504274 AAGTCGCACTGGGGTTCGA 61.504 57.895 0.00 0.00 38.60 3.71
46 47 2.029964 GTCGCACTGGGGTTCGAA 59.970 61.111 0.00 0.00 41.95 3.71
47 48 2.027625 GTCGCACTGGGGTTCGAAG 61.028 63.158 0.00 0.00 41.95 3.79
48 49 2.742372 CGCACTGGGGTTCGAAGG 60.742 66.667 0.00 0.00 34.24 3.46
49 50 3.056328 GCACTGGGGTTCGAAGGC 61.056 66.667 0.00 0.00 0.00 4.35
50 51 2.429930 CACTGGGGTTCGAAGGCA 59.570 61.111 0.00 0.00 0.00 4.75
51 52 1.672356 CACTGGGGTTCGAAGGCAG 60.672 63.158 0.00 0.00 0.00 4.85
52 53 2.045926 CTGGGGTTCGAAGGCAGG 60.046 66.667 0.00 0.00 0.00 4.85
53 54 4.344865 TGGGGTTCGAAGGCAGGC 62.345 66.667 0.00 0.00 0.00 4.85
77 78 4.424566 GACGGCCGCGTTAGGTCA 62.425 66.667 28.58 0.00 35.10 4.02
78 79 3.711541 GACGGCCGCGTTAGGTCAT 62.712 63.158 28.58 0.00 35.10 3.06
79 80 3.261951 CGGCCGCGTTAGGTCATG 61.262 66.667 14.67 0.00 35.10 3.07
80 81 2.125269 GGCCGCGTTAGGTCATGT 60.125 61.111 4.92 0.00 35.58 3.21
81 82 2.461110 GGCCGCGTTAGGTCATGTG 61.461 63.158 4.92 0.00 35.58 3.21
82 83 2.461110 GCCGCGTTAGGTCATGTGG 61.461 63.158 4.92 0.00 36.53 4.17
83 84 1.813753 CCGCGTTAGGTCATGTGGG 60.814 63.158 4.92 0.00 30.62 4.61
84 85 2.461110 CGCGTTAGGTCATGTGGGC 61.461 63.158 0.00 0.00 0.00 5.36
85 86 1.376683 GCGTTAGGTCATGTGGGCA 60.377 57.895 0.00 0.00 0.00 5.36
86 87 1.369091 GCGTTAGGTCATGTGGGCAG 61.369 60.000 0.00 0.00 0.00 4.85
87 88 1.369091 CGTTAGGTCATGTGGGCAGC 61.369 60.000 0.00 0.00 0.00 5.25
88 89 1.078497 TTAGGTCATGTGGGCAGCG 60.078 57.895 0.00 0.00 0.00 5.18
89 90 3.680620 TAGGTCATGTGGGCAGCGC 62.681 63.158 0.00 0.00 0.00 5.92
116 117 3.702048 CCCGGACGTGTGGGTGAT 61.702 66.667 0.73 0.00 40.76 3.06
117 118 2.345991 CCGGACGTGTGGGTGATT 59.654 61.111 0.00 0.00 0.00 2.57
118 119 2.032634 CCGGACGTGTGGGTGATTG 61.033 63.158 0.00 0.00 0.00 2.67
119 120 2.677003 CGGACGTGTGGGTGATTGC 61.677 63.158 0.00 0.00 0.00 3.56
120 121 2.677003 GGACGTGTGGGTGATTGCG 61.677 63.158 0.00 0.00 0.00 4.85
121 122 3.308878 GACGTGTGGGTGATTGCGC 62.309 63.158 0.00 0.00 0.00 6.09
122 123 4.101790 CGTGTGGGTGATTGCGCC 62.102 66.667 4.18 0.00 44.14 6.53
123 124 2.983030 GTGTGGGTGATTGCGCCA 60.983 61.111 4.18 0.00 46.75 5.69
124 125 2.983030 TGTGGGTGATTGCGCCAC 60.983 61.111 4.18 5.74 46.75 5.01
125 126 2.983030 GTGGGTGATTGCGCCACA 60.983 61.111 15.60 5.97 46.75 4.17
126 127 2.983030 TGGGTGATTGCGCCACAC 60.983 61.111 15.60 13.03 46.75 3.82
127 128 2.983030 GGGTGATTGCGCCACACA 60.983 61.111 22.74 9.50 46.75 3.72
128 129 2.255252 GGTGATTGCGCCACACAC 59.745 61.111 22.74 18.10 44.29 3.82
129 130 2.255252 GTGATTGCGCCACACACC 59.745 61.111 18.72 0.00 34.81 4.16
130 131 2.203266 TGATTGCGCCACACACCA 60.203 55.556 4.18 0.00 0.00 4.17
131 132 2.260154 TGATTGCGCCACACACCAG 61.260 57.895 4.18 0.00 0.00 4.00
132 133 1.965930 GATTGCGCCACACACCAGA 60.966 57.895 4.18 0.00 0.00 3.86
133 134 2.187599 GATTGCGCCACACACCAGAC 62.188 60.000 4.18 0.00 0.00 3.51
143 144 2.666190 CACCAGACGTGTGGGCTG 60.666 66.667 32.57 20.26 42.54 4.85
144 145 3.161450 ACCAGACGTGTGGGCTGT 61.161 61.111 32.57 11.59 42.54 4.40
145 146 2.666190 CCAGACGTGTGGGCTGTG 60.666 66.667 23.61 0.00 33.46 3.66
146 147 2.666190 CAGACGTGTGGGCTGTGG 60.666 66.667 4.46 0.00 0.00 4.17
147 148 4.626081 AGACGTGTGGGCTGTGGC 62.626 66.667 0.00 0.00 37.82 5.01
148 149 4.626081 GACGTGTGGGCTGTGGCT 62.626 66.667 0.00 0.00 38.73 4.75
149 150 4.935495 ACGTGTGGGCTGTGGCTG 62.935 66.667 0.00 0.00 38.73 4.85
194 195 3.948719 GGGGTTGTCTCCGTGCCA 61.949 66.667 0.00 0.00 0.00 4.92
195 196 2.668550 GGGTTGTCTCCGTGCCAC 60.669 66.667 0.00 0.00 0.00 5.01
196 197 2.110213 GGTTGTCTCCGTGCCACA 59.890 61.111 0.00 0.00 0.00 4.17
197 198 2.251642 GGTTGTCTCCGTGCCACAC 61.252 63.158 0.00 0.00 0.00 3.82
198 199 1.522806 GTTGTCTCCGTGCCACACA 60.523 57.895 0.00 0.00 33.40 3.72
199 200 1.227527 TTGTCTCCGTGCCACACAG 60.228 57.895 0.00 0.00 33.40 3.66
200 201 2.357517 GTCTCCGTGCCACACAGG 60.358 66.667 0.00 1.06 41.84 4.00
213 214 4.539083 ACAGGGCGTGCGACACAA 62.539 61.111 7.17 0.00 33.40 3.33
214 215 4.012895 CAGGGCGTGCGACACAAC 62.013 66.667 0.00 2.33 33.40 3.32
219 220 4.619227 CGTGCGACACAACCCCCT 62.619 66.667 9.95 0.00 33.40 4.79
220 221 2.745037 GTGCGACACAACCCCCTA 59.255 61.111 5.30 0.00 34.08 3.53
221 222 1.375523 GTGCGACACAACCCCCTAG 60.376 63.158 5.30 0.00 34.08 3.02
222 223 1.534476 TGCGACACAACCCCCTAGA 60.534 57.895 0.00 0.00 0.00 2.43
223 224 0.907704 TGCGACACAACCCCCTAGAT 60.908 55.000 0.00 0.00 0.00 1.98
224 225 1.117150 GCGACACAACCCCCTAGATA 58.883 55.000 0.00 0.00 0.00 1.98
225 226 1.202498 GCGACACAACCCCCTAGATAC 60.202 57.143 0.00 0.00 0.00 2.24
226 227 1.411612 CGACACAACCCCCTAGATACC 59.588 57.143 0.00 0.00 0.00 2.73
227 228 2.474112 GACACAACCCCCTAGATACCA 58.526 52.381 0.00 0.00 0.00 3.25
228 229 2.169978 GACACAACCCCCTAGATACCAC 59.830 54.545 0.00 0.00 0.00 4.16
229 230 2.193127 CACAACCCCCTAGATACCACA 58.807 52.381 0.00 0.00 0.00 4.17
230 231 2.093128 CACAACCCCCTAGATACCACAC 60.093 54.545 0.00 0.00 0.00 3.82
231 232 1.138266 CAACCCCCTAGATACCACACG 59.862 57.143 0.00 0.00 0.00 4.49
232 233 0.337428 ACCCCCTAGATACCACACGT 59.663 55.000 0.00 0.00 0.00 4.49
233 234 0.750850 CCCCCTAGATACCACACGTG 59.249 60.000 15.48 15.48 0.00 4.49
234 235 1.481871 CCCCTAGATACCACACGTGT 58.518 55.000 17.22 17.22 0.00 4.49
235 236 1.136305 CCCCTAGATACCACACGTGTG 59.864 57.143 36.13 36.13 45.23 3.82
245 246 1.507562 CACACGTGTGGCAGTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
246 247 2.076100 CACACGTGTGGCAGTTATCAT 58.924 47.619 35.65 0.33 42.10 2.45
247 248 2.094258 CACACGTGTGGCAGTTATCATC 59.906 50.000 35.65 0.00 42.10 2.92
248 249 1.324435 CACGTGTGGCAGTTATCATCG 59.676 52.381 7.58 0.00 0.00 3.84
249 250 1.067142 ACGTGTGGCAGTTATCATCGT 60.067 47.619 0.00 0.00 0.00 3.73
250 251 1.588404 CGTGTGGCAGTTATCATCGTC 59.412 52.381 0.00 0.00 0.00 4.20
251 252 1.933853 GTGTGGCAGTTATCATCGTCC 59.066 52.381 0.00 0.00 0.00 4.79
321 322 3.500014 GCGCCTAGTCTATCCGAAATAC 58.500 50.000 0.00 0.00 0.00 1.89
365 366 0.961019 TTCCATGCAGTGACCAAAGC 59.039 50.000 0.00 0.00 0.00 3.51
368 369 0.806868 CATGCAGTGACCAAAGCGAT 59.193 50.000 0.00 0.00 0.00 4.58
374 375 1.278985 AGTGACCAAAGCGATCCATCA 59.721 47.619 0.00 0.00 0.00 3.07
375 376 2.083774 GTGACCAAAGCGATCCATCAA 58.916 47.619 0.00 0.00 0.00 2.57
376 377 2.096496 GTGACCAAAGCGATCCATCAAG 59.904 50.000 0.00 0.00 0.00 3.02
377 378 2.027285 TGACCAAAGCGATCCATCAAGA 60.027 45.455 0.00 0.00 0.00 3.02
378 379 2.611292 GACCAAAGCGATCCATCAAGAG 59.389 50.000 0.00 0.00 0.00 2.85
379 380 1.945394 CCAAAGCGATCCATCAAGAGG 59.055 52.381 0.00 0.00 0.00 3.69
398 399 5.021458 AGAGGATGACCAAATCAAAAGCAT 58.979 37.500 0.00 0.00 41.93 3.79
402 403 5.337009 GGATGACCAAATCAAAAGCATCAGT 60.337 40.000 0.00 0.00 41.93 3.41
403 404 5.125100 TGACCAAATCAAAAGCATCAGTC 57.875 39.130 0.00 0.00 33.02 3.51
458 473 6.035112 CGTGAGAGAAGCCTAGTGAATTAAAC 59.965 42.308 0.00 0.00 0.00 2.01
575 906 2.171725 GGCACATAAGACGACCGGC 61.172 63.158 0.00 0.00 0.00 6.13
576 907 2.171725 GCACATAAGACGACCGGCC 61.172 63.158 0.00 0.00 0.00 6.13
577 908 1.876714 CACATAAGACGACCGGCCG 60.877 63.158 21.04 21.04 0.00 6.13
578 909 2.279252 CATAAGACGACCGGCCGG 60.279 66.667 42.17 42.17 42.03 6.13
597 928 1.407851 GGAGATCCGGTTGGTTTACCC 60.408 57.143 0.00 0.00 34.56 3.69
635 975 1.528309 CCCTGTTGGTTCGCTGGTT 60.528 57.895 0.00 0.00 0.00 3.67
637 977 1.654220 CTGTTGGTTCGCTGGTTGG 59.346 57.895 0.00 0.00 0.00 3.77
810 1271 0.294887 CGCTCGAAACGATGTGCTAC 59.705 55.000 1.42 0.00 34.61 3.58
811 1272 0.294887 GCTCGAAACGATGTGCTACG 59.705 55.000 0.00 0.00 34.61 3.51
873 1643 3.788227 AGTGGCCACTGTGATCTTTTA 57.212 42.857 37.39 0.00 40.75 1.52
947 1730 1.620819 AGGAAACTCACACGAGCTCAT 59.379 47.619 15.40 0.00 43.66 2.90
948 1731 1.728971 GGAAACTCACACGAGCTCATG 59.271 52.381 15.40 12.05 43.66 3.07
949 1732 2.610479 GGAAACTCACACGAGCTCATGA 60.610 50.000 18.08 13.77 43.66 3.07
950 1733 2.360553 AACTCACACGAGCTCATGAG 57.639 50.000 26.49 26.49 43.66 2.90
966 1749 1.783284 TGAGCTAGCAAACTCACACG 58.217 50.000 18.83 0.00 37.99 4.49
973 1756 0.440371 GCAAACTCACACGAGCTAGC 59.560 55.000 6.62 6.62 43.66 3.42
976 1759 2.526304 AACTCACACGAGCTAGCAAA 57.474 45.000 18.83 0.00 43.66 3.68
1139 1929 4.271533 TGGTTAGTGCTTACAAACTGTTCG 59.728 41.667 0.00 0.00 0.00 3.95
1174 2082 4.413969 GTCGTCTCCTAGCTACTTGAAAC 58.586 47.826 0.00 0.00 0.00 2.78
1188 2096 8.573885 AGCTACTTGAAACAAGGTTTTTATACC 58.426 33.333 14.51 0.00 38.53 2.73
1196 2104 4.770531 ACAAGGTTTTTATACCAGCCTTCC 59.229 41.667 0.00 0.00 40.82 3.46
1208 2116 4.259356 ACCAGCCTTCCGAAATTTAGTAC 58.741 43.478 0.00 0.00 0.00 2.73
1209 2117 4.019591 ACCAGCCTTCCGAAATTTAGTACT 60.020 41.667 0.00 0.00 0.00 2.73
1210 2118 4.571176 CCAGCCTTCCGAAATTTAGTACTC 59.429 45.833 0.00 0.00 0.00 2.59
1211 2119 4.571176 CAGCCTTCCGAAATTTAGTACTCC 59.429 45.833 0.00 0.00 0.00 3.85
1212 2120 3.875727 GCCTTCCGAAATTTAGTACTCCC 59.124 47.826 0.00 0.00 0.00 4.30
1213 2121 4.383880 GCCTTCCGAAATTTAGTACTCCCT 60.384 45.833 0.00 0.00 0.00 4.20
1214 2122 5.742063 CCTTCCGAAATTTAGTACTCCCTT 58.258 41.667 0.00 0.00 0.00 3.95
1215 2123 5.816258 CCTTCCGAAATTTAGTACTCCCTTC 59.184 44.000 0.00 0.00 0.00 3.46
1216 2124 5.002464 TCCGAAATTTAGTACTCCCTTCG 57.998 43.478 16.40 16.40 35.25 3.79
1217 2125 4.463891 TCCGAAATTTAGTACTCCCTTCGT 59.536 41.667 19.39 0.00 34.02 3.85
1218 2126 4.802563 CCGAAATTTAGTACTCCCTTCGTC 59.197 45.833 19.39 4.61 34.02 4.20
1219 2127 4.802563 CGAAATTTAGTACTCCCTTCGTCC 59.197 45.833 0.00 0.00 31.90 4.79
1220 2128 4.750021 AATTTAGTACTCCCTTCGTCCC 57.250 45.455 0.00 0.00 0.00 4.46
1221 2129 2.905415 TTAGTACTCCCTTCGTCCCA 57.095 50.000 0.00 0.00 0.00 4.37
1222 2130 3.393426 TTAGTACTCCCTTCGTCCCAT 57.607 47.619 0.00 0.00 0.00 4.00
1223 2131 4.524802 TTAGTACTCCCTTCGTCCCATA 57.475 45.455 0.00 0.00 0.00 2.74
1224 2132 3.393426 AGTACTCCCTTCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
1225 2133 3.924922 AGTACTCCCTTCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
1226 2134 5.070823 AGTACTCCCTTCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
1227 2135 5.652324 AGTACTCCCTTCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
1228 2136 6.797707 AGTACTCCCTTCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
1229 2137 7.243824 AGTACTCCCTTCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
1230 2138 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
1231 2139 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
1232 2140 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
1233 2141 6.320518 TCCCTTCGTCCCATAATATAAGAGT 58.679 40.000 0.00 0.00 0.00 3.24
1234 2142 6.210784 TCCCTTCGTCCCATAATATAAGAGTG 59.789 42.308 0.00 0.00 0.00 3.51
1235 2143 6.014499 CCCTTCGTCCCATAATATAAGAGTGT 60.014 42.308 0.00 0.00 0.00 3.55
1236 2144 7.177921 CCCTTCGTCCCATAATATAAGAGTGTA 59.822 40.741 0.00 0.00 0.00 2.90
1237 2145 8.244802 CCTTCGTCCCATAATATAAGAGTGTAG 58.755 40.741 0.00 0.00 0.00 2.74
1238 2146 8.701908 TTCGTCCCATAATATAAGAGTGTAGT 57.298 34.615 0.00 0.00 0.00 2.73
1239 2147 8.107399 TCGTCCCATAATATAAGAGTGTAGTG 57.893 38.462 0.00 0.00 0.00 2.74
1240 2148 7.722728 TCGTCCCATAATATAAGAGTGTAGTGT 59.277 37.037 0.00 0.00 0.00 3.55
1241 2149 8.358148 CGTCCCATAATATAAGAGTGTAGTGTT 58.642 37.037 0.00 0.00 0.00 3.32
1278 2186 8.530269 AACGCTTTTATATTATAAGACGGAGG 57.470 34.615 14.14 0.00 0.00 4.30
1279 2187 7.095270 ACGCTTTTATATTATAAGACGGAGGG 58.905 38.462 14.14 10.66 0.00 4.30
1280 2188 7.039504 ACGCTTTTATATTATAAGACGGAGGGA 60.040 37.037 14.14 0.00 0.00 4.20
1281 2189 7.488471 CGCTTTTATATTATAAGACGGAGGGAG 59.512 40.741 0.00 0.00 0.00 4.30
1282 2190 8.312564 GCTTTTATATTATAAGACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
1311 2219 7.112122 AGTTACTTGCAACTGAATATCCATGA 58.888 34.615 0.00 0.00 37.37 3.07
1315 2223 6.379133 ACTTGCAACTGAATATCCATGAATGT 59.621 34.615 0.00 0.00 0.00 2.71
1320 2229 7.221452 GCAACTGAATATCCATGAATGTTTGTC 59.779 37.037 0.00 0.00 0.00 3.18
1347 2256 0.324738 TTCCAGGTGGAGCTCTCGAT 60.325 55.000 14.64 0.00 46.36 3.59
1353 2262 2.158385 AGGTGGAGCTCTCGATCCTAAT 60.158 50.000 14.64 0.00 45.96 1.73
1371 2280 0.169672 ATCGTCCGACGGTTACAGTG 59.830 55.000 20.35 0.00 42.81 3.66
1452 2361 1.971505 TTCAGCCCTGATACCCGCAG 61.972 60.000 0.00 0.00 39.64 5.18
1478 2387 1.407437 CCTCTCCCGAACAATGGAAGG 60.407 57.143 0.00 0.00 0.00 3.46
1479 2388 1.279271 CTCTCCCGAACAATGGAAGGT 59.721 52.381 0.00 0.00 0.00 3.50
1480 2389 1.003118 TCTCCCGAACAATGGAAGGTG 59.997 52.381 0.00 0.00 0.00 4.00
1481 2390 0.768622 TCCCGAACAATGGAAGGTGT 59.231 50.000 0.00 0.00 0.00 4.16
1482 2391 1.144093 TCCCGAACAATGGAAGGTGTT 59.856 47.619 0.00 0.00 40.61 3.32
1483 2392 1.269448 CCCGAACAATGGAAGGTGTTG 59.731 52.381 0.00 0.00 38.07 3.33
1484 2393 2.226330 CCGAACAATGGAAGGTGTTGA 58.774 47.619 0.00 0.00 38.07 3.18
1485 2394 2.031157 CCGAACAATGGAAGGTGTTGAC 60.031 50.000 0.00 0.00 38.07 3.18
1511 2420 3.285215 CGCCTGGATGCATGCCTC 61.285 66.667 16.68 15.19 0.00 4.70
1525 2438 3.745480 GCATGCCTCCATCTAGTTAGCAA 60.745 47.826 6.36 0.00 31.73 3.91
1532 2445 5.698545 CCTCCATCTAGTTAGCAATACAAGC 59.301 44.000 0.00 0.00 0.00 4.01
1550 2463 4.141801 ACAAGCTATTGCCACGACCTTATA 60.142 41.667 0.00 0.00 40.27 0.98
1560 2473 4.714632 CCACGACCTTATATTGAACCCAT 58.285 43.478 0.00 0.00 0.00 4.00
1579 2492 5.048921 ACCCATAGTAATATCGTCTCGTGTG 60.049 44.000 0.00 0.00 0.00 3.82
1584 2497 6.127810 AGTAATATCGTCTCGTGTGCTTAA 57.872 37.500 0.00 0.00 0.00 1.85
1595 2508 7.445836 GTCTCGTGTGCTTAAATGTTTACTAG 58.554 38.462 0.00 0.00 0.00 2.57
1623 2536 7.138736 CGAATAAAACTGGATGTCTGTTGTTT 58.861 34.615 0.00 0.00 37.55 2.83
1632 2545 4.338118 GGATGTCTGTTGTTTGGTTCAGAA 59.662 41.667 0.00 0.00 38.40 3.02
1633 2546 5.163561 GGATGTCTGTTGTTTGGTTCAGAAA 60.164 40.000 0.00 0.00 38.40 2.52
1634 2547 5.913137 TGTCTGTTGTTTGGTTCAGAAAT 57.087 34.783 0.00 0.00 38.40 2.17
1668 2581 7.095910 TGGACGGTGTTTCTAACGAATAAATA 58.904 34.615 0.00 0.00 0.00 1.40
1669 2582 7.063308 TGGACGGTGTTTCTAACGAATAAATAC 59.937 37.037 0.00 0.00 0.00 1.89
1675 2588 8.106348 GTGTTTCTAACGAATAAATACGGACAG 58.894 37.037 0.00 0.00 0.00 3.51
1684 2597 3.594603 AAATACGGACAGTGAGTGAGG 57.405 47.619 0.00 0.00 0.00 3.86
1685 2598 0.818296 ATACGGACAGTGAGTGAGGC 59.182 55.000 0.00 0.00 0.00 4.70
1692 2605 0.037512 CAGTGAGTGAGGCTGTCTGG 60.038 60.000 0.00 0.00 0.00 3.86
1698 2611 0.977395 GTGAGGCTGTCTGGTTAGGT 59.023 55.000 0.00 0.00 0.00 3.08
1704 2617 3.452627 AGGCTGTCTGGTTAGGTATCTTG 59.547 47.826 0.00 0.00 0.00 3.02
1705 2618 3.198872 GCTGTCTGGTTAGGTATCTTGC 58.801 50.000 0.00 0.00 0.00 4.01
1706 2619 3.118592 GCTGTCTGGTTAGGTATCTTGCT 60.119 47.826 0.00 0.00 0.00 3.91
1707 2620 4.099573 GCTGTCTGGTTAGGTATCTTGCTA 59.900 45.833 0.00 0.00 0.00 3.49
1708 2621 5.593010 CTGTCTGGTTAGGTATCTTGCTAC 58.407 45.833 0.00 0.00 0.00 3.58
1709 2622 4.404715 TGTCTGGTTAGGTATCTTGCTACC 59.595 45.833 0.00 0.00 41.34 3.18
1719 2632 6.262193 GGTATCTTGCTACCTATCAGACTC 57.738 45.833 0.00 0.00 38.51 3.36
1720 2633 5.106475 GGTATCTTGCTACCTATCAGACTCG 60.106 48.000 0.00 0.00 38.51 4.18
1721 2634 2.619177 TCTTGCTACCTATCAGACTCGC 59.381 50.000 0.00 0.00 0.00 5.03
1722 2635 2.350057 TGCTACCTATCAGACTCGCT 57.650 50.000 0.00 0.00 0.00 4.93
1723 2636 2.222886 TGCTACCTATCAGACTCGCTC 58.777 52.381 0.00 0.00 0.00 5.03
1724 2637 2.158740 TGCTACCTATCAGACTCGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
1725 2638 3.071167 TGCTACCTATCAGACTCGCTCTA 59.929 47.826 0.00 0.00 0.00 2.43
1726 2639 4.258543 GCTACCTATCAGACTCGCTCTAT 58.741 47.826 0.00 0.00 0.00 1.98
1727 2640 4.331717 GCTACCTATCAGACTCGCTCTATC 59.668 50.000 0.00 0.00 0.00 2.08
1728 2641 4.634012 ACCTATCAGACTCGCTCTATCT 57.366 45.455 0.00 0.00 0.00 1.98
1729 2642 4.980573 ACCTATCAGACTCGCTCTATCTT 58.019 43.478 0.00 0.00 0.00 2.40
1730 2643 5.381757 ACCTATCAGACTCGCTCTATCTTT 58.618 41.667 0.00 0.00 0.00 2.52
1731 2644 6.535540 ACCTATCAGACTCGCTCTATCTTTA 58.464 40.000 0.00 0.00 0.00 1.85
1732 2645 6.428771 ACCTATCAGACTCGCTCTATCTTTAC 59.571 42.308 0.00 0.00 0.00 2.01
1733 2646 6.428465 CCTATCAGACTCGCTCTATCTTTACA 59.572 42.308 0.00 0.00 0.00 2.41
1734 2647 5.743026 TCAGACTCGCTCTATCTTTACAG 57.257 43.478 0.00 0.00 0.00 2.74
1735 2648 4.576873 TCAGACTCGCTCTATCTTTACAGG 59.423 45.833 0.00 0.00 0.00 4.00
1736 2649 3.886505 AGACTCGCTCTATCTTTACAGGG 59.113 47.826 0.00 0.00 0.00 4.45
1737 2650 2.362717 ACTCGCTCTATCTTTACAGGGC 59.637 50.000 0.00 0.00 34.78 5.19
1738 2651 2.625790 CTCGCTCTATCTTTACAGGGCT 59.374 50.000 0.00 0.00 36.05 5.19
1739 2652 2.623889 TCGCTCTATCTTTACAGGGCTC 59.376 50.000 0.00 0.00 36.05 4.70
1740 2653 2.625790 CGCTCTATCTTTACAGGGCTCT 59.374 50.000 0.00 0.00 36.05 4.09
1741 2654 3.068873 CGCTCTATCTTTACAGGGCTCTT 59.931 47.826 0.00 0.00 36.05 2.85
1742 2655 4.627058 GCTCTATCTTTACAGGGCTCTTC 58.373 47.826 0.00 0.00 35.29 2.87
1743 2656 4.343814 GCTCTATCTTTACAGGGCTCTTCT 59.656 45.833 0.00 0.00 35.29 2.85
1744 2657 5.508994 GCTCTATCTTTACAGGGCTCTTCTC 60.509 48.000 0.00 0.00 35.29 2.87
1745 2658 5.519808 TCTATCTTTACAGGGCTCTTCTCA 58.480 41.667 0.00 0.00 0.00 3.27
1746 2659 3.963428 TCTTTACAGGGCTCTTCTCAC 57.037 47.619 0.00 0.00 0.00 3.51
1747 2660 2.567615 TCTTTACAGGGCTCTTCTCACC 59.432 50.000 0.00 0.00 0.00 4.02
1748 2661 1.276622 TTACAGGGCTCTTCTCACCC 58.723 55.000 0.00 0.00 44.62 4.61
1751 2664 2.266055 GGGCTCTTCTCACCCGTG 59.734 66.667 0.00 0.00 32.92 4.94
1752 2665 2.435059 GGCTCTTCTCACCCGTGC 60.435 66.667 0.00 0.00 0.00 5.34
1753 2666 2.811317 GCTCTTCTCACCCGTGCG 60.811 66.667 0.00 0.00 0.00 5.34
1754 2667 2.811317 CTCTTCTCACCCGTGCGC 60.811 66.667 0.00 0.00 0.00 6.09
1755 2668 3.573772 CTCTTCTCACCCGTGCGCA 62.574 63.158 5.66 5.66 0.00 6.09
1756 2669 2.434884 CTTCTCACCCGTGCGCAT 60.435 61.111 15.91 0.00 0.00 4.73
1757 2670 2.741985 TTCTCACCCGTGCGCATG 60.742 61.111 22.83 22.83 0.00 4.06
1758 2671 3.233259 TTCTCACCCGTGCGCATGA 62.233 57.895 30.68 20.22 0.00 3.07
1759 2672 2.723586 TTCTCACCCGTGCGCATGAA 62.724 55.000 30.68 12.88 0.00 2.57
1760 2673 2.046411 TCACCCGTGCGCATGAAT 60.046 55.556 30.68 15.06 0.00 2.57
1761 2674 0.809636 CTCACCCGTGCGCATGAATA 60.810 55.000 30.68 11.78 0.00 1.75
1762 2675 0.809636 TCACCCGTGCGCATGAATAG 60.810 55.000 30.68 17.37 0.00 1.73
1763 2676 0.809636 CACCCGTGCGCATGAATAGA 60.810 55.000 30.68 0.00 0.00 1.98
1764 2677 0.107897 ACCCGTGCGCATGAATAGAA 60.108 50.000 30.68 0.00 0.00 2.10
1765 2678 0.583438 CCCGTGCGCATGAATAGAAG 59.417 55.000 30.68 11.70 0.00 2.85
1766 2679 1.290203 CCGTGCGCATGAATAGAAGT 58.710 50.000 30.68 0.00 0.00 3.01
1767 2680 1.665679 CCGTGCGCATGAATAGAAGTT 59.334 47.619 30.68 0.00 0.00 2.66
1768 2681 2.863740 CCGTGCGCATGAATAGAAGTTA 59.136 45.455 30.68 0.00 0.00 2.24
1769 2682 3.494626 CCGTGCGCATGAATAGAAGTTAT 59.505 43.478 30.68 0.00 0.00 1.89
1770 2683 4.448891 CGTGCGCATGAATAGAAGTTATG 58.551 43.478 25.38 0.00 0.00 1.90
1771 2684 4.214437 GTGCGCATGAATAGAAGTTATGC 58.786 43.478 15.91 0.00 40.40 3.14
1772 2685 4.024556 GTGCGCATGAATAGAAGTTATGCT 60.025 41.667 15.91 0.00 41.34 3.79
1773 2686 5.177511 GTGCGCATGAATAGAAGTTATGCTA 59.822 40.000 15.91 0.00 41.34 3.49
1774 2687 5.406477 TGCGCATGAATAGAAGTTATGCTAG 59.594 40.000 5.66 0.00 41.34 3.42
1775 2688 5.635280 GCGCATGAATAGAAGTTATGCTAGA 59.365 40.000 0.30 0.00 41.34 2.43
1776 2689 6.146184 GCGCATGAATAGAAGTTATGCTAGAA 59.854 38.462 0.30 0.00 41.34 2.10
1777 2690 7.621013 GCGCATGAATAGAAGTTATGCTAGAAG 60.621 40.741 0.30 0.00 41.34 2.85
1778 2691 7.148672 CGCATGAATAGAAGTTATGCTAGAAGG 60.149 40.741 0.00 0.00 41.34 3.46
1779 2692 7.118971 GCATGAATAGAAGTTATGCTAGAAGGG 59.881 40.741 0.00 0.00 40.58 3.95
1780 2693 6.525629 TGAATAGAAGTTATGCTAGAAGGGC 58.474 40.000 0.00 0.00 0.00 5.19
1781 2694 3.460857 AGAAGTTATGCTAGAAGGGCG 57.539 47.619 0.00 0.00 0.00 6.13
1782 2695 3.031736 AGAAGTTATGCTAGAAGGGCGA 58.968 45.455 0.00 0.00 0.00 5.54
1783 2696 3.643792 AGAAGTTATGCTAGAAGGGCGAT 59.356 43.478 0.00 0.00 0.00 4.58
1784 2697 4.833380 AGAAGTTATGCTAGAAGGGCGATA 59.167 41.667 0.00 0.00 0.00 2.92
1785 2698 4.522722 AGTTATGCTAGAAGGGCGATAC 57.477 45.455 0.00 0.00 0.00 2.24
1786 2699 3.057456 AGTTATGCTAGAAGGGCGATACG 60.057 47.826 0.00 0.00 0.00 3.06
1787 2700 0.603569 ATGCTAGAAGGGCGATACGG 59.396 55.000 0.00 0.00 0.00 4.02
1816 2729 2.193536 GCGGCGCCCTTTTATCCAT 61.194 57.895 23.58 0.00 0.00 3.41
1839 2752 6.160483 TCCATCCAACTTTTATAAAGGGGT 57.840 37.500 11.56 4.10 0.00 4.95
1845 2758 5.242171 CCAACTTTTATAAAGGGGTCAACGT 59.758 40.000 11.56 0.00 0.00 3.99
1852 2765 7.614124 TTATAAAGGGGTCAACGTCATAAAC 57.386 36.000 0.00 0.00 0.00 2.01
1865 2778 4.463209 CGTCATAAACGCAACAGAACATT 58.537 39.130 0.00 0.00 45.76 2.71
1876 2789 3.753294 ACAGAACATTGTCGAGACCTT 57.247 42.857 0.34 0.00 0.00 3.50
1910 2823 0.843984 ACAACAACCCTAGCCACTGT 59.156 50.000 0.00 0.00 0.00 3.55
1935 2848 7.284034 GTCATTTTCCATCTTCATCACCATAGT 59.716 37.037 0.00 0.00 0.00 2.12
1941 2854 6.328410 TCCATCTTCATCACCATAGTCATCTT 59.672 38.462 0.00 0.00 0.00 2.40
1947 2860 5.367644 TCATCACCATAGTCATCTTCACCAT 59.632 40.000 0.00 0.00 0.00 3.55
1975 2893 4.081087 ACCGCAACATTCATCCTAGTTAGT 60.081 41.667 0.00 0.00 0.00 2.24
2018 2936 3.546815 CGCATCCAGCAACTATTGTAAGC 60.547 47.826 0.00 0.00 46.13 3.09
2020 2938 2.627945 TCCAGCAACTATTGTAAGCCG 58.372 47.619 0.00 0.00 0.00 5.52
2023 2941 3.308866 CCAGCAACTATTGTAAGCCGTAC 59.691 47.826 0.00 0.00 0.00 3.67
2033 2955 7.866393 ACTATTGTAAGCCGTACTATCAATCAC 59.134 37.037 0.00 0.00 35.18 3.06
2035 2957 6.216801 TGTAAGCCGTACTATCAATCACTT 57.783 37.500 0.00 0.00 33.46 3.16
2074 2996 3.882888 TCTTCAATGGTTTCTTCTTGCGT 59.117 39.130 0.00 0.00 0.00 5.24
2100 3022 7.539436 TCTGATCGCTATATGTGAGTAATTCC 58.461 38.462 0.00 0.00 38.71 3.01
2101 3023 6.631016 TGATCGCTATATGTGAGTAATTCCC 58.369 40.000 0.00 0.00 38.71 3.97
2120 3042 1.916181 CCTAAGGTCATGGGTTGAGGT 59.084 52.381 0.00 0.00 34.17 3.85
2121 3043 2.356125 CCTAAGGTCATGGGTTGAGGTG 60.356 54.545 0.00 0.00 34.17 4.00
2124 3046 2.344592 AGGTCATGGGTTGAGGTGTAA 58.655 47.619 0.00 0.00 34.17 2.41
2139 3061 1.467342 GTGTAACCTTGCAACCCGATC 59.533 52.381 0.00 0.00 0.00 3.69
2152 3074 4.261801 CAACCCGATCTATTTGTTGGAGT 58.738 43.478 0.00 0.00 34.21 3.85
2160 3082 7.307632 CCGATCTATTTGTTGGAGTGATTGATC 60.308 40.741 0.00 0.00 0.00 2.92
2210 3138 8.747666 TGTGAAATAAATTTGTTTCGTAGTTGC 58.252 29.630 25.76 14.57 40.01 4.17
2213 3141 8.880878 AAATAAATTTGTTTCGTAGTTGCCTT 57.119 26.923 7.06 0.00 0.00 4.35
2245 3173 0.535102 CGGTCTTTGTCCTTGCAGGT 60.535 55.000 0.00 0.00 36.53 4.00
2319 3247 4.123506 TGTGAAACGCTATTCTGAACACA 58.876 39.130 0.00 0.00 42.39 3.72
2371 3307 3.788116 TCCTACCTCTGGGGATACAAA 57.212 47.619 0.00 0.00 38.76 2.83
2389 3325 9.005777 GGATACAAAAGGTGTAGTCATTAAACA 57.994 33.333 0.00 0.00 45.88 2.83
2391 3327 7.875327 ACAAAAGGTGTAGTCATTAAACACT 57.125 32.000 7.18 2.01 42.46 3.55
2414 3354 8.024865 CACTCAATGCTTTTGTCTGATTTATCA 58.975 33.333 0.00 0.00 35.16 2.15
2440 3380 0.110147 CCTAGGTAATCTCGCGCGAG 60.110 60.000 45.23 45.23 43.21 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.179116 CGTCGTCTCCTACCTCTCGA 60.179 60.000 0.00 0.00 0.00 4.04
3 4 0.179116 TCGTCGTCTCCTACCTCTCG 60.179 60.000 0.00 0.00 0.00 4.04
5 6 0.459934 CGTCGTCGTCTCCTACCTCT 60.460 60.000 0.00 0.00 0.00 3.69
6 7 1.427592 CCGTCGTCGTCTCCTACCTC 61.428 65.000 0.71 0.00 35.01 3.85
7 8 1.449246 CCGTCGTCGTCTCCTACCT 60.449 63.158 0.71 0.00 35.01 3.08
8 9 3.096791 CCGTCGTCGTCTCCTACC 58.903 66.667 0.71 0.00 35.01 3.18
9 10 1.915614 TTGCCGTCGTCGTCTCCTAC 61.916 60.000 0.71 0.00 35.01 3.18
10 11 1.642037 CTTGCCGTCGTCGTCTCCTA 61.642 60.000 0.71 0.00 35.01 2.94
11 12 2.979197 CTTGCCGTCGTCGTCTCCT 61.979 63.158 0.71 0.00 35.01 3.69
12 13 2.504244 CTTGCCGTCGTCGTCTCC 60.504 66.667 0.71 0.00 35.01 3.71
13 14 1.796749 GACTTGCCGTCGTCGTCTC 60.797 63.158 0.71 0.00 32.04 3.36
14 15 2.254651 GACTTGCCGTCGTCGTCT 59.745 61.111 0.71 0.00 32.04 4.18
21 22 3.414700 CCAGTGCGACTTGCCGTC 61.415 66.667 0.00 0.00 45.60 4.79
22 23 4.988598 CCCAGTGCGACTTGCCGT 62.989 66.667 0.00 0.00 45.60 5.68
24 25 4.643387 ACCCCAGTGCGACTTGCC 62.643 66.667 0.00 0.00 45.60 4.52
25 26 2.594592 AACCCCAGTGCGACTTGC 60.595 61.111 0.00 0.00 46.70 4.01
26 27 3.655481 GAACCCCAGTGCGACTTG 58.345 61.111 0.00 0.00 0.00 3.16
32 33 3.056328 GCCTTCGAACCCCAGTGC 61.056 66.667 0.00 0.00 0.00 4.40
33 34 1.672356 CTGCCTTCGAACCCCAGTG 60.672 63.158 0.00 0.00 0.00 3.66
34 35 2.750350 CTGCCTTCGAACCCCAGT 59.250 61.111 0.00 0.00 0.00 4.00
35 36 2.045926 CCTGCCTTCGAACCCCAG 60.046 66.667 0.00 0.90 0.00 4.45
36 37 4.344865 GCCTGCCTTCGAACCCCA 62.345 66.667 0.00 0.00 0.00 4.96
62 63 3.261951 CATGACCTAACGCGGCCG 61.262 66.667 24.05 24.05 41.14 6.13
63 64 2.125269 ACATGACCTAACGCGGCC 60.125 61.111 12.47 0.00 0.00 6.13
64 65 2.461110 CCACATGACCTAACGCGGC 61.461 63.158 12.47 0.00 0.00 6.53
65 66 1.813753 CCCACATGACCTAACGCGG 60.814 63.158 12.47 0.00 0.00 6.46
66 67 2.461110 GCCCACATGACCTAACGCG 61.461 63.158 3.53 3.53 0.00 6.01
67 68 1.369091 CTGCCCACATGACCTAACGC 61.369 60.000 0.00 0.00 0.00 4.84
68 69 1.369091 GCTGCCCACATGACCTAACG 61.369 60.000 0.00 0.00 0.00 3.18
69 70 1.369091 CGCTGCCCACATGACCTAAC 61.369 60.000 0.00 0.00 0.00 2.34
70 71 1.078497 CGCTGCCCACATGACCTAA 60.078 57.895 0.00 0.00 0.00 2.69
71 72 2.584064 CGCTGCCCACATGACCTA 59.416 61.111 0.00 0.00 0.00 3.08
100 101 2.032634 CAATCACCCACACGTCCGG 61.033 63.158 0.00 0.00 0.00 5.14
101 102 2.677003 GCAATCACCCACACGTCCG 61.677 63.158 0.00 0.00 0.00 4.79
102 103 2.677003 CGCAATCACCCACACGTCC 61.677 63.158 0.00 0.00 0.00 4.79
103 104 2.860293 CGCAATCACCCACACGTC 59.140 61.111 0.00 0.00 0.00 4.34
104 105 3.353836 GCGCAATCACCCACACGT 61.354 61.111 0.30 0.00 0.00 4.49
105 106 4.101790 GGCGCAATCACCCACACG 62.102 66.667 10.83 0.00 0.00 4.49
106 107 2.983030 TGGCGCAATCACCCACAC 60.983 61.111 10.83 0.00 0.00 3.82
107 108 2.983030 GTGGCGCAATCACCCACA 60.983 61.111 10.83 0.00 46.38 4.17
109 110 2.983030 GTGTGGCGCAATCACCCA 60.983 61.111 10.83 0.00 34.46 4.51
110 111 2.983030 TGTGTGGCGCAATCACCC 60.983 61.111 10.83 0.00 34.46 4.61
111 112 2.255252 GTGTGTGGCGCAATCACC 59.745 61.111 10.83 3.48 34.46 4.02
112 113 2.255252 GGTGTGTGGCGCAATCAC 59.745 61.111 10.83 15.21 35.82 3.06
113 114 2.203266 TGGTGTGTGGCGCAATCA 60.203 55.556 10.83 1.43 0.00 2.57
114 115 1.965930 TCTGGTGTGTGGCGCAATC 60.966 57.895 10.83 0.00 0.00 2.67
115 116 2.112928 TCTGGTGTGTGGCGCAAT 59.887 55.556 10.83 0.00 0.00 3.56
116 117 2.899838 GTCTGGTGTGTGGCGCAA 60.900 61.111 10.83 0.00 0.00 4.85
119 120 3.337889 CACGTCTGGTGTGTGGCG 61.338 66.667 0.00 0.00 41.89 5.69
127 128 3.161450 ACAGCCCACACGTCTGGT 61.161 61.111 9.14 0.00 32.42 4.00
128 129 2.666190 CACAGCCCACACGTCTGG 60.666 66.667 2.34 2.34 32.42 3.86
129 130 2.666190 CCACAGCCCACACGTCTG 60.666 66.667 0.02 0.02 0.00 3.51
130 131 4.626081 GCCACAGCCCACACGTCT 62.626 66.667 0.00 0.00 0.00 4.18
131 132 4.626081 AGCCACAGCCCACACGTC 62.626 66.667 0.00 0.00 41.25 4.34
132 133 4.935495 CAGCCACAGCCCACACGT 62.935 66.667 0.00 0.00 41.25 4.49
177 178 3.948719 TGGCACGGAGACAACCCC 61.949 66.667 0.00 0.00 0.00 4.95
178 179 2.668550 GTGGCACGGAGACAACCC 60.669 66.667 0.00 0.00 0.00 4.11
179 180 2.110213 TGTGGCACGGAGACAACC 59.890 61.111 13.77 0.00 0.00 3.77
180 181 1.498865 CTGTGTGGCACGGAGACAAC 61.499 60.000 13.77 4.08 42.79 3.32
181 182 1.227527 CTGTGTGGCACGGAGACAA 60.228 57.895 13.77 0.00 42.79 3.18
182 183 2.421314 CTGTGTGGCACGGAGACA 59.579 61.111 13.77 10.55 42.79 3.41
183 184 2.357517 CCTGTGTGGCACGGAGAC 60.358 66.667 13.77 6.00 42.79 3.36
184 185 3.625897 CCCTGTGTGGCACGGAGA 61.626 66.667 13.77 0.00 42.79 3.71
196 197 4.539083 TTGTGTCGCACGCCCTGT 62.539 61.111 5.69 0.00 37.14 4.00
197 198 4.012895 GTTGTGTCGCACGCCCTG 62.013 66.667 5.69 0.00 37.14 4.45
202 203 3.229156 TAGGGGGTTGTGTCGCACG 62.229 63.158 5.69 0.00 37.14 5.34
203 204 1.375523 CTAGGGGGTTGTGTCGCAC 60.376 63.158 3.44 3.44 34.56 5.34
204 205 0.907704 ATCTAGGGGGTTGTGTCGCA 60.908 55.000 0.00 0.00 0.00 5.10
205 206 1.117150 TATCTAGGGGGTTGTGTCGC 58.883 55.000 0.00 0.00 0.00 5.19
206 207 1.411612 GGTATCTAGGGGGTTGTGTCG 59.588 57.143 0.00 0.00 0.00 4.35
207 208 2.169978 GTGGTATCTAGGGGGTTGTGTC 59.830 54.545 0.00 0.00 0.00 3.67
208 209 2.193993 GTGGTATCTAGGGGGTTGTGT 58.806 52.381 0.00 0.00 0.00 3.72
209 210 2.093128 GTGTGGTATCTAGGGGGTTGTG 60.093 54.545 0.00 0.00 0.00 3.33
210 211 2.193993 GTGTGGTATCTAGGGGGTTGT 58.806 52.381 0.00 0.00 0.00 3.32
211 212 1.138266 CGTGTGGTATCTAGGGGGTTG 59.862 57.143 0.00 0.00 0.00 3.77
212 213 1.273438 ACGTGTGGTATCTAGGGGGTT 60.273 52.381 0.00 0.00 0.00 4.11
213 214 0.337428 ACGTGTGGTATCTAGGGGGT 59.663 55.000 0.00 0.00 0.00 4.95
214 215 0.750850 CACGTGTGGTATCTAGGGGG 59.249 60.000 7.58 0.00 0.00 5.40
215 216 1.136305 CACACGTGTGGTATCTAGGGG 59.864 57.143 35.65 10.09 42.10 4.79
216 217 2.579207 CACACGTGTGGTATCTAGGG 57.421 55.000 35.65 10.61 42.10 3.53
226 227 1.507562 TGATAACTGCCACACGTGTG 58.492 50.000 36.13 36.13 45.23 3.82
227 228 2.346803 GATGATAACTGCCACACGTGT 58.653 47.619 17.22 17.22 0.00 4.49
228 229 1.324435 CGATGATAACTGCCACACGTG 59.676 52.381 15.48 15.48 0.00 4.49
229 230 1.067142 ACGATGATAACTGCCACACGT 60.067 47.619 0.00 0.00 0.00 4.49
230 231 1.588404 GACGATGATAACTGCCACACG 59.412 52.381 0.00 0.00 0.00 4.49
231 232 1.933853 GGACGATGATAACTGCCACAC 59.066 52.381 0.00 0.00 0.00 3.82
232 233 1.552792 TGGACGATGATAACTGCCACA 59.447 47.619 0.00 0.00 0.00 4.17
233 234 2.309528 TGGACGATGATAACTGCCAC 57.690 50.000 0.00 0.00 0.00 5.01
234 235 3.558931 AATGGACGATGATAACTGCCA 57.441 42.857 0.00 0.00 0.00 4.92
235 236 4.130118 AGAAATGGACGATGATAACTGCC 58.870 43.478 0.00 0.00 0.00 4.85
236 237 5.741388 AAGAAATGGACGATGATAACTGC 57.259 39.130 0.00 0.00 0.00 4.40
267 268 1.892209 ACCGATCGTTTTGGCTCTTT 58.108 45.000 15.09 0.00 30.99 2.52
273 274 2.785713 AACCAAACCGATCGTTTTGG 57.214 45.000 39.49 39.49 42.15 3.28
275 276 3.499537 GGTCTAACCAAACCGATCGTTTT 59.500 43.478 15.09 9.87 42.15 2.43
288 289 3.961225 TAGGCGCCCGGTCTAACCA 62.961 63.158 26.15 0.00 38.47 3.67
299 300 0.672342 TTTCGGATAGACTAGGCGCC 59.328 55.000 21.89 21.89 0.00 6.53
300 301 2.726832 ATTTCGGATAGACTAGGCGC 57.273 50.000 0.00 0.00 0.00 6.53
339 340 3.005684 TGGTCACTGCATGGAAATTGTTC 59.994 43.478 0.00 0.00 0.00 3.18
345 346 1.340889 GCTTTGGTCACTGCATGGAAA 59.659 47.619 0.00 0.00 0.00 3.13
346 347 0.961019 GCTTTGGTCACTGCATGGAA 59.039 50.000 0.00 0.00 0.00 3.53
350 351 1.089920 GATCGCTTTGGTCACTGCAT 58.910 50.000 0.00 0.00 0.00 3.96
374 375 4.834496 TGCTTTTGATTTGGTCATCCTCTT 59.166 37.500 0.00 0.00 36.54 2.85
375 376 4.410099 TGCTTTTGATTTGGTCATCCTCT 58.590 39.130 0.00 0.00 36.54 3.69
376 377 4.789012 TGCTTTTGATTTGGTCATCCTC 57.211 40.909 0.00 0.00 36.54 3.71
377 378 4.773674 TGATGCTTTTGATTTGGTCATCCT 59.226 37.500 0.00 0.00 36.54 3.24
378 379 5.075858 TGATGCTTTTGATTTGGTCATCC 57.924 39.130 0.00 0.00 36.54 3.51
379 380 5.717119 ACTGATGCTTTTGATTTGGTCATC 58.283 37.500 0.00 0.00 36.54 2.92
441 442 6.371825 GTGTGCTAGTTTAATTCACTAGGCTT 59.628 38.462 19.37 0.00 42.81 4.35
442 443 5.875359 GTGTGCTAGTTTAATTCACTAGGCT 59.125 40.000 19.37 0.00 42.81 4.58
443 444 5.875359 AGTGTGCTAGTTTAATTCACTAGGC 59.125 40.000 19.37 14.22 42.81 3.93
444 445 9.035607 CATAGTGTGCTAGTTTAATTCACTAGG 57.964 37.037 19.37 9.72 42.81 3.02
471 486 8.979574 CCCTTTCTTTAGCGATAAACAGTATAG 58.020 37.037 0.87 0.00 0.00 1.31
473 488 6.766467 CCCCTTTCTTTAGCGATAAACAGTAT 59.234 38.462 0.87 0.00 0.00 2.12
534 863 6.424812 GCCATACCAAGGAAAATATTCAATGC 59.575 38.462 0.00 0.00 37.29 3.56
535 864 7.439056 GTGCCATACCAAGGAAAATATTCAATG 59.561 37.037 0.00 0.00 37.29 2.82
540 869 8.546083 TTATGTGCCATACCAAGGAAAATATT 57.454 30.769 0.00 0.00 0.00 1.28
576 907 1.741394 GGTAAACCAACCGGATCTCCG 60.741 57.143 9.46 11.68 46.76 4.63
577 908 1.407851 GGGTAAACCAACCGGATCTCC 60.408 57.143 9.46 0.00 40.73 3.71
578 909 1.741394 CGGGTAAACCAACCGGATCTC 60.741 57.143 9.46 0.00 43.69 2.75
597 928 3.676924 GACGACGACGACGACTCCG 62.677 68.421 25.15 13.10 42.66 4.63
635 975 2.294074 CCGTGGAAGAAAAAGTGACCA 58.706 47.619 0.00 0.00 0.00 4.02
637 977 1.001706 GGCCGTGGAAGAAAAAGTGAC 60.002 52.381 0.00 0.00 0.00 3.67
781 1145 1.141881 TTTCGAGCGAGAGATGGGC 59.858 57.895 0.00 0.00 0.00 5.36
873 1643 4.286549 GGACATGATCCTGATGGAGAGAAT 59.713 45.833 0.00 0.00 46.91 2.40
947 1730 1.339929 TCGTGTGAGTTTGCTAGCTCA 59.660 47.619 17.23 10.40 39.17 4.26
948 1731 1.989165 CTCGTGTGAGTTTGCTAGCTC 59.011 52.381 17.23 5.47 37.46 4.09
949 1732 1.937108 GCTCGTGTGAGTTTGCTAGCT 60.937 52.381 17.23 0.00 44.48 3.32
950 1733 0.440371 GCTCGTGTGAGTTTGCTAGC 59.560 55.000 8.10 8.10 44.48 3.42
951 1734 2.071688 AGCTCGTGTGAGTTTGCTAG 57.928 50.000 0.00 0.00 44.48 3.42
952 1735 2.671351 GCTAGCTCGTGTGAGTTTGCTA 60.671 50.000 7.70 0.00 45.59 3.49
953 1736 1.937108 GCTAGCTCGTGTGAGTTTGCT 60.937 52.381 7.70 0.00 45.59 3.91
954 1737 0.440371 GCTAGCTCGTGTGAGTTTGC 59.560 55.000 7.70 0.78 43.85 3.68
955 1738 1.783284 TGCTAGCTCGTGTGAGTTTG 58.217 50.000 17.23 0.00 44.48 2.93
956 1739 2.526304 TTGCTAGCTCGTGTGAGTTT 57.474 45.000 17.23 0.00 44.48 2.66
957 1740 2.135933 GTTTGCTAGCTCGTGTGAGTT 58.864 47.619 17.23 0.00 44.48 3.01
958 1741 1.605712 GGTTTGCTAGCTCGTGTGAGT 60.606 52.381 17.23 0.00 44.48 3.41
959 1742 1.071605 GGTTTGCTAGCTCGTGTGAG 58.928 55.000 17.23 0.00 45.49 3.51
960 1743 0.391228 TGGTTTGCTAGCTCGTGTGA 59.609 50.000 17.23 0.00 0.00 3.58
961 1744 0.792640 CTGGTTTGCTAGCTCGTGTG 59.207 55.000 17.23 0.00 0.00 3.82
962 1745 0.951040 GCTGGTTTGCTAGCTCGTGT 60.951 55.000 17.23 0.00 44.51 4.49
966 1749 3.911137 GGGCTGGTTTGCTAGCTC 58.089 61.111 17.23 6.44 46.69 4.09
973 1756 2.908073 GCTCGTGTGGGCTGGTTTG 61.908 63.158 0.00 0.00 0.00 2.93
976 1759 4.008933 GAGCTCGTGTGGGCTGGT 62.009 66.667 0.00 0.00 39.05 4.00
1026 1816 3.811702 TGGAGGAGCACCAGGAAG 58.188 61.111 2.07 0.00 38.94 3.46
1114 1904 3.881089 ACAGTTTGTAAGCACTAACCACC 59.119 43.478 0.00 0.00 40.08 4.61
1139 1929 1.064357 GAGACGACGAGAGGATGGAAC 59.936 57.143 0.00 0.00 0.00 3.62
1174 2082 4.142469 CGGAAGGCTGGTATAAAAACCTTG 60.142 45.833 0.00 0.00 40.44 3.61
1188 2096 4.571176 GGAGTACTAAATTTCGGAAGGCTG 59.429 45.833 0.00 0.00 0.00 4.85
1196 2104 4.802563 GGACGAAGGGAGTACTAAATTTCG 59.197 45.833 20.45 20.45 41.00 3.46
1208 2116 6.437793 ACTCTTATATTATGGGACGAAGGGAG 59.562 42.308 0.00 0.00 0.00 4.30
1209 2117 6.210784 CACTCTTATATTATGGGACGAAGGGA 59.789 42.308 0.00 0.00 0.00 4.20
1210 2118 6.014499 ACACTCTTATATTATGGGACGAAGGG 60.014 42.308 0.00 0.00 0.00 3.95
1211 2119 6.994221 ACACTCTTATATTATGGGACGAAGG 58.006 40.000 0.00 0.00 0.00 3.46
1212 2120 8.794553 ACTACACTCTTATATTATGGGACGAAG 58.205 37.037 0.00 0.00 0.00 3.79
1213 2121 8.573885 CACTACACTCTTATATTATGGGACGAA 58.426 37.037 0.00 0.00 0.00 3.85
1214 2122 7.722728 ACACTACACTCTTATATTATGGGACGA 59.277 37.037 0.00 0.00 0.00 4.20
1215 2123 7.883217 ACACTACACTCTTATATTATGGGACG 58.117 38.462 0.00 0.00 0.00 4.79
1252 2160 8.985805 CCTCCGTCTTATAATATAAAAGCGTTT 58.014 33.333 2.53 2.53 0.00 3.60
1253 2161 7.601508 CCCTCCGTCTTATAATATAAAAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
1254 2162 7.039504 TCCCTCCGTCTTATAATATAAAAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
1255 2163 7.318141 TCCCTCCGTCTTATAATATAAAAGCG 58.682 38.462 0.00 0.46 0.00 4.68
1256 2164 8.312564 ACTCCCTCCGTCTTATAATATAAAAGC 58.687 37.037 0.00 0.00 0.00 3.51
1262 2170 8.834733 ACTACTACTCCCTCCGTCTTATAATAT 58.165 37.037 0.00 0.00 0.00 1.28
1263 2171 8.212259 ACTACTACTCCCTCCGTCTTATAATA 57.788 38.462 0.00 0.00 0.00 0.98
1264 2172 7.089106 ACTACTACTCCCTCCGTCTTATAAT 57.911 40.000 0.00 0.00 0.00 1.28
1265 2173 6.506538 ACTACTACTCCCTCCGTCTTATAA 57.493 41.667 0.00 0.00 0.00 0.98
1266 2174 6.506538 AACTACTACTCCCTCCGTCTTATA 57.493 41.667 0.00 0.00 0.00 0.98
1267 2175 5.385628 AACTACTACTCCCTCCGTCTTAT 57.614 43.478 0.00 0.00 0.00 1.73
1268 2176 4.851639 AACTACTACTCCCTCCGTCTTA 57.148 45.455 0.00 0.00 0.00 2.10
1269 2177 3.735720 AACTACTACTCCCTCCGTCTT 57.264 47.619 0.00 0.00 0.00 3.01
1270 2178 3.779738 AGTAACTACTACTCCCTCCGTCT 59.220 47.826 0.00 0.00 35.90 4.18
1271 2179 4.149511 AGTAACTACTACTCCCTCCGTC 57.850 50.000 0.00 0.00 35.90 4.79
1272 2180 4.268359 CAAGTAACTACTACTCCCTCCGT 58.732 47.826 0.00 0.00 40.14 4.69
1273 2181 3.066481 GCAAGTAACTACTACTCCCTCCG 59.934 52.174 0.00 0.00 40.14 4.63
1274 2182 4.021916 TGCAAGTAACTACTACTCCCTCC 58.978 47.826 0.00 0.00 40.14 4.30
1275 2183 5.185442 AGTTGCAAGTAACTACTACTCCCTC 59.815 44.000 4.57 0.00 40.14 4.30
1276 2184 5.047235 CAGTTGCAAGTAACTACTACTCCCT 60.047 44.000 6.43 0.00 40.14 4.20
1277 2185 5.047519 TCAGTTGCAAGTAACTACTACTCCC 60.048 44.000 6.43 0.00 40.14 4.30
1278 2186 6.022163 TCAGTTGCAAGTAACTACTACTCC 57.978 41.667 6.43 0.00 40.14 3.85
1279 2187 9.804758 ATATTCAGTTGCAAGTAACTACTACTC 57.195 33.333 6.43 0.00 40.14 2.59
1280 2188 9.804758 GATATTCAGTTGCAAGTAACTACTACT 57.195 33.333 6.43 0.00 43.06 2.57
1281 2189 9.032420 GGATATTCAGTTGCAAGTAACTACTAC 57.968 37.037 6.43 0.00 38.78 2.73
1282 2190 8.755028 TGGATATTCAGTTGCAAGTAACTACTA 58.245 33.333 6.43 0.00 38.78 1.82
1347 2256 1.670811 GTAACCGTCGGACGATTAGGA 59.329 52.381 30.33 3.09 46.05 2.94
1353 2262 1.575922 CACTGTAACCGTCGGACGA 59.424 57.895 30.33 9.24 46.05 4.20
1356 2265 2.652530 GGCACTGTAACCGTCGGA 59.347 61.111 20.51 0.00 0.00 4.55
1362 2271 2.746277 CCAGGCGGCACTGTAACC 60.746 66.667 13.08 0.00 36.75 2.85
1405 2314 0.321122 GAGCACCTGTACAAGCTGCT 60.321 55.000 18.42 17.84 40.91 4.24
1423 2332 0.179020 CAGGGCTGAACACTTGGTGA 60.179 55.000 4.62 0.00 36.96 4.02
1429 2338 0.912486 GGGTATCAGGGCTGAACACT 59.088 55.000 0.00 0.00 43.58 3.55
1452 2361 2.249844 TTGTTCGGGAGAGGTGTTTC 57.750 50.000 0.00 0.00 41.75 2.78
1478 2387 1.440353 GCGGTGCAATCGTCAACAC 60.440 57.895 11.50 0.00 0.00 3.32
1479 2388 2.612567 GGCGGTGCAATCGTCAACA 61.613 57.895 9.93 0.00 31.94 3.33
1480 2389 2.175811 GGCGGTGCAATCGTCAAC 59.824 61.111 9.93 0.00 31.94 3.18
1481 2390 2.031919 AGGCGGTGCAATCGTCAA 59.968 55.556 15.88 0.00 34.34 3.18
1482 2391 2.741985 CAGGCGGTGCAATCGTCA 60.742 61.111 15.88 0.00 34.34 4.35
1483 2392 3.499737 CCAGGCGGTGCAATCGTC 61.500 66.667 7.15 7.15 0.00 4.20
1484 2393 3.329542 ATCCAGGCGGTGCAATCGT 62.330 57.895 11.50 0.00 0.00 3.73
1485 2394 2.514592 ATCCAGGCGGTGCAATCG 60.515 61.111 6.37 6.37 0.00 3.34
1511 2420 8.715998 CAATAGCTTGTATTGCTAACTAGATGG 58.284 37.037 0.00 0.00 44.73 3.51
1525 2438 2.170607 AGGTCGTGGCAATAGCTTGTAT 59.829 45.455 0.00 0.00 41.70 2.29
1532 2445 6.073222 GGTTCAATATAAGGTCGTGGCAATAG 60.073 42.308 0.00 0.00 0.00 1.73
1550 2463 7.039923 ACGAGACGATATTACTATGGGTTCAAT 60.040 37.037 0.00 0.00 0.00 2.57
1560 2473 5.746307 AAGCACACGAGACGATATTACTA 57.254 39.130 0.00 0.00 0.00 1.82
1584 2497 8.943002 CCAGTTTTATTCGGACTAGTAAACATT 58.057 33.333 14.44 0.00 0.00 2.71
1595 2508 4.935808 ACAGACATCCAGTTTTATTCGGAC 59.064 41.667 0.00 0.00 0.00 4.79
1607 2520 3.631686 TGAACCAAACAACAGACATCCAG 59.368 43.478 0.00 0.00 0.00 3.86
1623 2536 7.282224 CCGTCCATCTTTATTATTTCTGAACCA 59.718 37.037 0.00 0.00 0.00 3.67
1632 2545 9.675464 TTAGAAACACCGTCCATCTTTATTATT 57.325 29.630 0.00 0.00 0.00 1.40
1633 2546 9.106070 GTTAGAAACACCGTCCATCTTTATTAT 57.894 33.333 0.00 0.00 0.00 1.28
1634 2547 7.276218 CGTTAGAAACACCGTCCATCTTTATTA 59.724 37.037 0.00 0.00 0.00 0.98
1644 2557 5.844301 TTTATTCGTTAGAAACACCGTCC 57.156 39.130 0.00 0.00 40.15 4.79
1668 2581 1.531840 AGCCTCACTCACTGTCCGT 60.532 57.895 0.00 0.00 0.00 4.69
1669 2582 1.080230 CAGCCTCACTCACTGTCCG 60.080 63.158 0.00 0.00 0.00 4.79
1675 2588 0.394565 AACCAGACAGCCTCACTCAC 59.605 55.000 0.00 0.00 0.00 3.51
1684 2597 3.118592 AGCAAGATACCTAACCAGACAGC 60.119 47.826 0.00 0.00 0.00 4.40
1685 2598 4.744795 AGCAAGATACCTAACCAGACAG 57.255 45.455 0.00 0.00 0.00 3.51
1698 2611 4.456222 GCGAGTCTGATAGGTAGCAAGATA 59.544 45.833 0.00 0.00 0.00 1.98
1704 2617 2.500229 AGAGCGAGTCTGATAGGTAGC 58.500 52.381 0.00 0.00 32.57 3.58
1705 2618 5.730550 AGATAGAGCGAGTCTGATAGGTAG 58.269 45.833 0.00 0.00 36.64 3.18
1706 2619 5.748670 AGATAGAGCGAGTCTGATAGGTA 57.251 43.478 0.00 0.00 36.64 3.08
1707 2620 4.634012 AGATAGAGCGAGTCTGATAGGT 57.366 45.455 0.00 0.00 36.64 3.08
1708 2621 5.957842 AAAGATAGAGCGAGTCTGATAGG 57.042 43.478 0.00 0.00 36.64 2.57
1709 2622 7.360861 CCTGTAAAGATAGAGCGAGTCTGATAG 60.361 44.444 0.00 0.00 36.64 2.08
1710 2623 6.428465 CCTGTAAAGATAGAGCGAGTCTGATA 59.572 42.308 0.00 0.00 36.64 2.15
1711 2624 5.240623 CCTGTAAAGATAGAGCGAGTCTGAT 59.759 44.000 0.00 0.00 36.64 2.90
1712 2625 4.576873 CCTGTAAAGATAGAGCGAGTCTGA 59.423 45.833 0.00 0.00 36.64 3.27
1713 2626 4.261405 CCCTGTAAAGATAGAGCGAGTCTG 60.261 50.000 0.00 0.00 36.64 3.51
1714 2627 3.886505 CCCTGTAAAGATAGAGCGAGTCT 59.113 47.826 0.00 0.00 39.59 3.24
1715 2628 3.551250 GCCCTGTAAAGATAGAGCGAGTC 60.551 52.174 0.00 0.00 0.00 3.36
1716 2629 2.362717 GCCCTGTAAAGATAGAGCGAGT 59.637 50.000 0.00 0.00 0.00 4.18
1717 2630 2.625790 AGCCCTGTAAAGATAGAGCGAG 59.374 50.000 0.00 0.00 0.00 5.03
1718 2631 2.623889 GAGCCCTGTAAAGATAGAGCGA 59.376 50.000 0.00 0.00 0.00 4.93
1719 2632 2.625790 AGAGCCCTGTAAAGATAGAGCG 59.374 50.000 0.00 0.00 0.00 5.03
1720 2633 4.343814 AGAAGAGCCCTGTAAAGATAGAGC 59.656 45.833 0.00 0.00 0.00 4.09
1721 2634 5.596361 TGAGAAGAGCCCTGTAAAGATAGAG 59.404 44.000 0.00 0.00 0.00 2.43
1722 2635 5.361285 GTGAGAAGAGCCCTGTAAAGATAGA 59.639 44.000 0.00 0.00 0.00 1.98
1723 2636 5.452636 GGTGAGAAGAGCCCTGTAAAGATAG 60.453 48.000 0.00 0.00 0.00 2.08
1724 2637 4.406003 GGTGAGAAGAGCCCTGTAAAGATA 59.594 45.833 0.00 0.00 0.00 1.98
1725 2638 3.198853 GGTGAGAAGAGCCCTGTAAAGAT 59.801 47.826 0.00 0.00 0.00 2.40
1726 2639 2.567615 GGTGAGAAGAGCCCTGTAAAGA 59.432 50.000 0.00 0.00 0.00 2.52
1727 2640 2.355209 GGGTGAGAAGAGCCCTGTAAAG 60.355 54.545 0.00 0.00 39.31 1.85
1728 2641 1.628846 GGGTGAGAAGAGCCCTGTAAA 59.371 52.381 0.00 0.00 39.31 2.01
1729 2642 1.276622 GGGTGAGAAGAGCCCTGTAA 58.723 55.000 0.00 0.00 39.31 2.41
1730 2643 0.970937 CGGGTGAGAAGAGCCCTGTA 60.971 60.000 0.00 0.00 40.22 2.74
1731 2644 2.286523 CGGGTGAGAAGAGCCCTGT 61.287 63.158 0.00 0.00 40.22 4.00
1732 2645 2.286523 ACGGGTGAGAAGAGCCCTG 61.287 63.158 0.00 0.00 40.22 4.45
1733 2646 2.120718 ACGGGTGAGAAGAGCCCT 59.879 61.111 0.00 0.00 40.22 5.19
1734 2647 2.266055 CACGGGTGAGAAGAGCCC 59.734 66.667 0.00 0.00 39.03 5.19
1735 2648 2.435059 GCACGGGTGAGAAGAGCC 60.435 66.667 2.38 0.00 0.00 4.70
1736 2649 2.811317 CGCACGGGTGAGAAGAGC 60.811 66.667 2.38 0.00 31.84 4.09
1737 2650 2.811317 GCGCACGGGTGAGAAGAG 60.811 66.667 0.18 0.00 31.84 2.85
1738 2651 2.942796 ATGCGCACGGGTGAGAAGA 61.943 57.895 14.90 0.00 31.84 2.87
1739 2652 2.434884 ATGCGCACGGGTGAGAAG 60.435 61.111 14.90 0.00 31.84 2.85
1740 2653 2.723586 TTCATGCGCACGGGTGAGAA 62.724 55.000 14.90 5.79 31.84 2.87
1741 2654 2.520465 ATTCATGCGCACGGGTGAGA 62.520 55.000 14.90 4.22 31.84 3.27
1742 2655 0.809636 TATTCATGCGCACGGGTGAG 60.810 55.000 14.90 0.00 0.00 3.51
1743 2656 0.809636 CTATTCATGCGCACGGGTGA 60.810 55.000 14.90 10.35 0.00 4.02
1744 2657 0.809636 TCTATTCATGCGCACGGGTG 60.810 55.000 14.90 7.46 0.00 4.61
1745 2658 0.107897 TTCTATTCATGCGCACGGGT 60.108 50.000 14.90 1.71 0.00 5.28
1746 2659 0.583438 CTTCTATTCATGCGCACGGG 59.417 55.000 14.90 5.58 0.00 5.28
1747 2660 1.290203 ACTTCTATTCATGCGCACGG 58.710 50.000 14.90 8.73 0.00 4.94
1748 2661 4.448891 CATAACTTCTATTCATGCGCACG 58.551 43.478 14.90 3.71 0.00 5.34
1749 2662 4.024556 AGCATAACTTCTATTCATGCGCAC 60.025 41.667 14.90 0.00 45.16 5.34
1750 2663 4.129380 AGCATAACTTCTATTCATGCGCA 58.871 39.130 14.96 14.96 45.16 6.09
1751 2664 4.739046 AGCATAACTTCTATTCATGCGC 57.261 40.909 0.00 0.00 45.16 6.09
1752 2665 7.148672 CCTTCTAGCATAACTTCTATTCATGCG 60.149 40.741 0.00 0.00 45.16 4.73
1753 2666 7.118971 CCCTTCTAGCATAACTTCTATTCATGC 59.881 40.741 0.00 0.00 41.78 4.06
1754 2667 7.118971 GCCCTTCTAGCATAACTTCTATTCATG 59.881 40.741 0.00 0.00 0.00 3.07
1755 2668 7.164803 GCCCTTCTAGCATAACTTCTATTCAT 58.835 38.462 0.00 0.00 0.00 2.57
1756 2669 6.525629 GCCCTTCTAGCATAACTTCTATTCA 58.474 40.000 0.00 0.00 0.00 2.57
1757 2670 5.635700 CGCCCTTCTAGCATAACTTCTATTC 59.364 44.000 0.00 0.00 0.00 1.75
1758 2671 5.304614 TCGCCCTTCTAGCATAACTTCTATT 59.695 40.000 0.00 0.00 0.00 1.73
1759 2672 4.833380 TCGCCCTTCTAGCATAACTTCTAT 59.167 41.667 0.00 0.00 0.00 1.98
1760 2673 4.212716 TCGCCCTTCTAGCATAACTTCTA 58.787 43.478 0.00 0.00 0.00 2.10
1761 2674 3.031736 TCGCCCTTCTAGCATAACTTCT 58.968 45.455 0.00 0.00 0.00 2.85
1762 2675 3.454371 TCGCCCTTCTAGCATAACTTC 57.546 47.619 0.00 0.00 0.00 3.01
1763 2676 4.558898 CGTATCGCCCTTCTAGCATAACTT 60.559 45.833 0.00 0.00 0.00 2.66
1764 2677 3.057456 CGTATCGCCCTTCTAGCATAACT 60.057 47.826 0.00 0.00 0.00 2.24
1765 2678 3.243336 CGTATCGCCCTTCTAGCATAAC 58.757 50.000 0.00 0.00 0.00 1.89
1766 2679 2.230508 CCGTATCGCCCTTCTAGCATAA 59.769 50.000 0.00 0.00 0.00 1.90
1767 2680 1.816835 CCGTATCGCCCTTCTAGCATA 59.183 52.381 0.00 0.00 0.00 3.14
1768 2681 0.603569 CCGTATCGCCCTTCTAGCAT 59.396 55.000 0.00 0.00 0.00 3.79
1769 2682 0.754217 ACCGTATCGCCCTTCTAGCA 60.754 55.000 0.00 0.00 0.00 3.49
1770 2683 0.318784 CACCGTATCGCCCTTCTAGC 60.319 60.000 0.00 0.00 0.00 3.42
1771 2684 1.315690 TCACCGTATCGCCCTTCTAG 58.684 55.000 0.00 0.00 0.00 2.43
1772 2685 1.406539 GTTCACCGTATCGCCCTTCTA 59.593 52.381 0.00 0.00 0.00 2.10
1773 2686 0.175073 GTTCACCGTATCGCCCTTCT 59.825 55.000 0.00 0.00 0.00 2.85
1774 2687 0.175073 AGTTCACCGTATCGCCCTTC 59.825 55.000 0.00 0.00 0.00 3.46
1775 2688 0.108329 CAGTTCACCGTATCGCCCTT 60.108 55.000 0.00 0.00 0.00 3.95
1776 2689 1.515954 CAGTTCACCGTATCGCCCT 59.484 57.895 0.00 0.00 0.00 5.19
1777 2690 2.171725 GCAGTTCACCGTATCGCCC 61.172 63.158 0.00 0.00 0.00 6.13
1778 2691 2.171725 GGCAGTTCACCGTATCGCC 61.172 63.158 0.00 0.00 0.00 5.54
1779 2692 1.421410 CTGGCAGTTCACCGTATCGC 61.421 60.000 6.28 0.00 0.00 4.58
1780 2693 1.421410 GCTGGCAGTTCACCGTATCG 61.421 60.000 17.16 0.00 0.00 2.92
1781 2694 1.421410 CGCTGGCAGTTCACCGTATC 61.421 60.000 17.16 0.00 0.00 2.24
1782 2695 1.447838 CGCTGGCAGTTCACCGTAT 60.448 57.895 17.16 0.00 0.00 3.06
1783 2696 2.048597 CGCTGGCAGTTCACCGTA 60.049 61.111 17.16 0.00 0.00 4.02
1784 2697 4.988598 CCGCTGGCAGTTCACCGT 62.989 66.667 17.16 0.00 0.00 4.83
1810 2723 9.586732 CCTTTATAAAAGTTGGATGGATGGATA 57.413 33.333 0.00 0.00 0.00 2.59
1816 2729 6.160483 ACCCCTTTATAAAAGTTGGATGGA 57.840 37.500 0.00 0.00 0.00 3.41
1845 2758 5.431420 ACAATGTTCTGTTGCGTTTATGA 57.569 34.783 0.00 0.00 0.00 2.15
1852 2765 1.792367 TCTCGACAATGTTCTGTTGCG 59.208 47.619 0.00 0.00 31.65 4.85
1865 2778 2.160205 ACGAAGATGAAGGTCTCGACA 58.840 47.619 0.00 0.00 0.00 4.35
1876 2789 3.676291 TGTTGTGGATGACGAAGATGA 57.324 42.857 0.00 0.00 0.00 2.92
1910 2823 7.348815 ACTATGGTGATGAAGATGGAAAATGA 58.651 34.615 0.00 0.00 0.00 2.57
1935 2848 2.742856 GCGGTGATGATGGTGAAGATGA 60.743 50.000 0.00 0.00 0.00 2.92
1941 2854 0.036022 TGTTGCGGTGATGATGGTGA 59.964 50.000 0.00 0.00 0.00 4.02
1947 2860 2.016318 GGATGAATGTTGCGGTGATGA 58.984 47.619 0.00 0.00 0.00 2.92
1975 2893 7.701809 TGCGATACACGATTACAAATTATGA 57.298 32.000 0.00 0.00 45.77 2.15
2018 2936 9.698309 ATGAAGATTAAGTGATTGATAGTACGG 57.302 33.333 0.00 0.00 0.00 4.02
2035 2957 8.680001 CCATTGAAGAACACATCATGAAGATTA 58.320 33.333 4.68 0.00 33.72 1.75
2074 2996 8.029522 GGAATTACTCACATATAGCGATCAGAA 58.970 37.037 0.00 0.00 0.00 3.02
2100 3022 1.916181 ACCTCAACCCATGACCTTAGG 59.084 52.381 0.00 0.00 33.47 2.69
2101 3023 2.305927 ACACCTCAACCCATGACCTTAG 59.694 50.000 0.00 0.00 33.47 2.18
2120 3042 1.349688 AGATCGGGTTGCAAGGTTACA 59.650 47.619 0.00 0.00 0.00 2.41
2121 3043 2.109425 AGATCGGGTTGCAAGGTTAC 57.891 50.000 0.00 0.00 0.00 2.50
2124 3046 3.016736 CAAATAGATCGGGTTGCAAGGT 58.983 45.455 0.00 0.00 0.00 3.50
2127 3049 3.192422 CCAACAAATAGATCGGGTTGCAA 59.808 43.478 0.00 0.00 37.96 4.08
2136 3058 8.442632 TGATCAATCACTCCAACAAATAGATC 57.557 34.615 0.00 0.00 0.00 2.75
2139 3061 8.517878 AGTTTGATCAATCACTCCAACAAATAG 58.482 33.333 16.79 0.00 36.36 1.73
2210 3138 1.219522 ACCGCGAACGAGACAAAAGG 61.220 55.000 8.23 0.00 43.93 3.11
2213 3141 0.249155 AAGACCGCGAACGAGACAAA 60.249 50.000 8.23 0.00 43.93 2.83
2245 3173 6.153000 GGCTCGATCTCTATAATCCTTGGTAA 59.847 42.308 0.00 0.00 0.00 2.85
2256 3184 4.522114 CTCTCCATGGCTCGATCTCTATA 58.478 47.826 6.96 0.00 0.00 1.31
2319 3247 5.430886 ACCGTACTAAACCTTTTGTCACTT 58.569 37.500 0.00 0.00 0.00 3.16
2371 3307 7.308589 GCATTGAGTGTTTAATGACTACACCTT 60.309 37.037 4.18 0.00 42.33 3.50
2389 3325 8.114331 TGATAAATCAGACAAAAGCATTGAGT 57.886 30.769 9.00 0.00 32.11 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.