Multiple sequence alignment - TraesCS7A01G368400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G368400 chr7A 100.000 2060 0 0 1 2060 541456043 541453984 0.000000e+00 3805.0
1 TraesCS7A01G368400 chr7A 100.000 726 0 0 2309 3034 541453735 541453010 0.000000e+00 1341.0
2 TraesCS7A01G368400 chr7A 98.951 667 5 2 1 665 18548186 18548852 0.000000e+00 1192.0
3 TraesCS7A01G368400 chr7A 98.338 662 10 1 1 661 629006758 629006097 0.000000e+00 1160.0
4 TraesCS7A01G368400 chr7D 97.124 1391 39 1 661 2050 458520615 458522005 0.000000e+00 2346.0
5 TraesCS7A01G368400 chr7D 85.556 270 15 10 2309 2556 458522030 458522297 8.340000e-66 261.0
6 TraesCS7A01G368400 chr7B 96.193 1392 47 3 661 2050 480275828 480277215 0.000000e+00 2272.0
7 TraesCS7A01G368400 chr7B 97.765 671 11 4 1 668 383161213 383160544 0.000000e+00 1153.0
8 TraesCS7A01G368400 chr7B 96.386 664 19 3 1 662 589098700 589099360 0.000000e+00 1088.0
9 TraesCS7A01G368400 chr7B 84.797 296 18 14 2309 2579 480277240 480277533 3.850000e-69 272.0
10 TraesCS7A01G368400 chr1A 98.510 671 8 2 1 669 577427945 577427275 0.000000e+00 1182.0
11 TraesCS7A01G368400 chr1A 94.231 52 2 1 2983 3033 155618437 155618386 9.020000e-11 78.7
12 TraesCS7A01G368400 chr1A 89.231 65 1 5 2975 3034 160842182 160842245 3.240000e-10 76.8
13 TraesCS7A01G368400 chr4B 98.346 665 9 2 1 664 469038259 469037596 0.000000e+00 1166.0
14 TraesCS7A01G368400 chr4B 100.000 45 0 0 2990 3034 529019432 529019388 1.940000e-12 84.2
15 TraesCS7A01G368400 chr4A 98.048 666 11 2 1 664 731336913 731337578 0.000000e+00 1157.0
16 TraesCS7A01G368400 chr4A 85.128 195 19 7 2765 2957 705177807 705177993 1.110000e-44 191.0
17 TraesCS7A01G368400 chr1B 98.042 664 12 1 1 663 426278760 426278097 0.000000e+00 1153.0
18 TraesCS7A01G368400 chr1B 90.323 62 3 3 2976 3034 371884757 371884818 9.020000e-11 78.7
19 TraesCS7A01G368400 chr2B 96.386 664 18 4 1 662 438361575 438360916 0.000000e+00 1088.0
20 TraesCS7A01G368400 chr2B 100.000 45 0 0 2989 3033 226973281 226973325 1.940000e-12 84.2
21 TraesCS7A01G368400 chr6B 84.770 499 68 6 1543 2035 279033070 279032574 7.560000e-136 494.0
22 TraesCS7A01G368400 chr6B 80.804 448 74 8 995 1439 279033571 279033133 1.040000e-89 340.0
23 TraesCS7A01G368400 chr6D 85.386 479 62 6 1563 2035 156437598 156437122 9.780000e-135 490.0
24 TraesCS7A01G368400 chr6D 81.027 448 73 8 995 1439 156438123 156437685 2.240000e-91 346.0
25 TraesCS7A01G368400 chr6A 84.369 499 70 6 1543 2035 209842090 209841594 1.640000e-132 483.0
26 TraesCS7A01G368400 chr6A 80.931 451 77 6 995 1439 209842600 209842153 6.230000e-92 348.0
27 TraesCS7A01G368400 chr4D 77.157 394 69 19 2565 2945 62308531 62308916 3.070000e-50 209.0
28 TraesCS7A01G368400 chr3A 86.207 145 17 3 2580 2723 36145284 36145426 1.460000e-33 154.0
29 TraesCS7A01G368400 chr3A 78.764 259 23 19 2639 2875 208636663 208636911 8.770000e-31 145.0
30 TraesCS7A01G368400 chr5A 92.727 55 4 0 2980 3034 97340113 97340167 2.510000e-11 80.5
31 TraesCS7A01G368400 chr2A 94.118 51 3 0 2984 3034 537991100 537991150 9.020000e-11 78.7
32 TraesCS7A01G368400 chr2A 91.071 56 3 2 2978 3033 484266238 484266291 1.170000e-09 75.0
33 TraesCS7A01G368400 chr3B 92.593 54 3 1 2981 3034 101134225 101134277 3.240000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G368400 chr7A 541453010 541456043 3033 True 2573.0 3805 100.0000 1 3034 2 chr7A.!!$R2 3033
1 TraesCS7A01G368400 chr7A 18548186 18548852 666 False 1192.0 1192 98.9510 1 665 1 chr7A.!!$F1 664
2 TraesCS7A01G368400 chr7A 629006097 629006758 661 True 1160.0 1160 98.3380 1 661 1 chr7A.!!$R1 660
3 TraesCS7A01G368400 chr7D 458520615 458522297 1682 False 1303.5 2346 91.3400 661 2556 2 chr7D.!!$F1 1895
4 TraesCS7A01G368400 chr7B 480275828 480277533 1705 False 1272.0 2272 90.4950 661 2579 2 chr7B.!!$F2 1918
5 TraesCS7A01G368400 chr7B 383160544 383161213 669 True 1153.0 1153 97.7650 1 668 1 chr7B.!!$R1 667
6 TraesCS7A01G368400 chr7B 589098700 589099360 660 False 1088.0 1088 96.3860 1 662 1 chr7B.!!$F1 661
7 TraesCS7A01G368400 chr1A 577427275 577427945 670 True 1182.0 1182 98.5100 1 669 1 chr1A.!!$R2 668
8 TraesCS7A01G368400 chr4B 469037596 469038259 663 True 1166.0 1166 98.3460 1 664 1 chr4B.!!$R1 663
9 TraesCS7A01G368400 chr4A 731336913 731337578 665 False 1157.0 1157 98.0480 1 664 1 chr4A.!!$F2 663
10 TraesCS7A01G368400 chr1B 426278097 426278760 663 True 1153.0 1153 98.0420 1 663 1 chr1B.!!$R1 662
11 TraesCS7A01G368400 chr2B 438360916 438361575 659 True 1088.0 1088 96.3860 1 662 1 chr2B.!!$R1 661
12 TraesCS7A01G368400 chr6B 279032574 279033571 997 True 417.0 494 82.7870 995 2035 2 chr6B.!!$R1 1040
13 TraesCS7A01G368400 chr6D 156437122 156438123 1001 True 418.0 490 83.2065 995 2035 2 chr6D.!!$R1 1040
14 TraesCS7A01G368400 chr6A 209841594 209842600 1006 True 415.5 483 82.6500 995 2035 2 chr6A.!!$R1 1040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 867 0.54341 TCTTGGACCTACGCCTTCCA 60.543 55.0 0.0 0.0 37.66 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2832 2875 0.038892 GTCGTCTTGCGGGTGTCTTA 60.039 55.0 0.0 0.0 41.72 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
406 412 2.991580 TCCCTCCCTTTTTCTCTCTGT 58.008 47.619 0.00 0.00 0.00 3.41
528 534 1.215912 CATGCAGCGGCCAAATCAA 59.784 52.632 6.32 0.00 40.13 2.57
675 681 4.017808 AGGGAGTATATAAGTGGCGCTAG 58.982 47.826 7.64 0.00 0.00 3.42
742 748 1.673329 GGAAGACAAGGAGAAGCCGTC 60.673 57.143 0.00 0.00 43.43 4.79
777 783 4.541705 CCACAAATAGGGAGAGAGAGAGA 58.458 47.826 0.00 0.00 0.00 3.10
860 867 0.543410 TCTTGGACCTACGCCTTCCA 60.543 55.000 0.00 0.00 37.66 3.53
865 872 1.229400 ACCTACGCCTTCCAGGGAA 60.229 57.895 0.09 0.09 35.37 3.97
891 899 2.841881 AGCCATTGCCATTCTTCCAAAT 59.158 40.909 0.00 0.00 38.69 2.32
1450 1467 3.553828 TCCAGGTAATTTGATCCGTCC 57.446 47.619 0.00 0.00 0.00 4.79
1513 1532 2.455674 TGAATGACGAGAACCTGTGG 57.544 50.000 0.00 0.00 0.00 4.17
1538 1557 2.125147 TGCCGGTGCATGCTCTAC 60.125 61.111 20.33 8.76 44.23 2.59
1541 1560 1.819229 CCGGTGCATGCTCTACTCT 59.181 57.895 20.33 0.00 0.00 3.24
1801 1823 0.036732 GATCTGCACCAGGTGTTCCA 59.963 55.000 21.26 9.63 35.75 3.53
1802 1824 0.478072 ATCTGCACCAGGTGTTCCAA 59.522 50.000 21.26 3.35 35.75 3.53
2035 2057 3.490155 CACATCTTGACGCTCAGATGATC 59.510 47.826 19.76 0.00 36.47 2.92
2340 2363 5.635280 CACACTTTTATCTGTGACTCGTCAT 59.365 40.000 2.75 0.00 42.18 3.06
2362 2385 4.983671 ACTGTCAAGGACTTTGTTTTCC 57.016 40.909 0.00 0.00 38.01 3.13
2364 2387 5.751586 ACTGTCAAGGACTTTGTTTTCCTA 58.248 37.500 0.00 0.00 41.72 2.94
2365 2388 6.184789 ACTGTCAAGGACTTTGTTTTCCTAA 58.815 36.000 0.00 0.00 41.72 2.69
2383 2406 2.182614 AATTCGTTTCCAGCGGTGCG 62.183 55.000 9.63 7.57 0.00 5.34
2404 2427 6.020121 GTGCGCTTTATTTTCGTAGATGTAGA 60.020 38.462 9.73 0.00 35.04 2.59
2405 2428 6.198403 TGCGCTTTATTTTCGTAGATGTAGAG 59.802 38.462 9.73 0.00 35.04 2.43
2447 2487 8.177456 ACAGGGAGGATGTATATTGTAGTGATA 58.823 37.037 0.00 0.00 0.00 2.15
2485 2526 3.193267 TGATCAAGCTTTTTCCCAATCGG 59.807 43.478 0.00 0.00 0.00 4.18
2504 2545 6.677781 ATCGGGAATACTGTAAATTGTGTG 57.322 37.500 0.00 0.00 0.00 3.82
2510 2551 7.390718 GGGAATACTGTAAATTGTGTGTCTCTT 59.609 37.037 0.00 0.00 0.00 2.85
2511 2552 8.443937 GGAATACTGTAAATTGTGTGTCTCTTC 58.556 37.037 0.00 0.00 0.00 2.87
2516 2559 7.225538 ACTGTAAATTGTGTGTCTCTTCTTCTG 59.774 37.037 0.00 0.00 0.00 3.02
2523 2566 5.582269 TGTGTGTCTCTTCTTCTGTTGAAAG 59.418 40.000 0.00 0.00 0.00 2.62
2536 2579 6.227298 TCTGTTGAAAGATAGATCCAGACC 57.773 41.667 0.00 0.00 0.00 3.85
2537 2580 5.011090 TGTTGAAAGATAGATCCAGACCG 57.989 43.478 0.00 0.00 0.00 4.79
2538 2581 4.709886 TGTTGAAAGATAGATCCAGACCGA 59.290 41.667 0.00 0.00 0.00 4.69
2539 2582 5.163509 TGTTGAAAGATAGATCCAGACCGAG 60.164 44.000 0.00 0.00 0.00 4.63
2558 2601 4.805192 CCGAGTGGCATGAATTAATTTTGG 59.195 41.667 1.43 0.00 0.00 3.28
2605 2648 8.267620 AGATGATGTAAAATAGATCAGGACCA 57.732 34.615 0.00 0.00 41.07 4.02
2606 2649 8.153550 AGATGATGTAAAATAGATCAGGACCAC 58.846 37.037 0.00 0.00 41.07 4.16
2607 2650 7.437713 TGATGTAAAATAGATCAGGACCACT 57.562 36.000 0.00 0.00 34.03 4.00
2608 2651 7.861629 TGATGTAAAATAGATCAGGACCACTT 58.138 34.615 0.00 0.00 34.03 3.16
2609 2652 8.328758 TGATGTAAAATAGATCAGGACCACTTT 58.671 33.333 0.00 0.00 34.03 2.66
2610 2653 9.178758 GATGTAAAATAGATCAGGACCACTTTT 57.821 33.333 0.00 0.00 0.00 2.27
2611 2654 8.934023 TGTAAAATAGATCAGGACCACTTTTT 57.066 30.769 0.00 0.00 0.00 1.94
2614 2657 8.934023 AAAATAGATCAGGACCACTTTTTACA 57.066 30.769 0.00 0.00 0.00 2.41
2615 2658 9.533831 AAAATAGATCAGGACCACTTTTTACAT 57.466 29.630 0.00 0.00 0.00 2.29
2616 2659 8.738645 AATAGATCAGGACCACTTTTTACATC 57.261 34.615 0.00 0.00 0.00 3.06
2617 2660 6.126863 AGATCAGGACCACTTTTTACATCA 57.873 37.500 0.00 0.00 0.00 3.07
2618 2661 5.940470 AGATCAGGACCACTTTTTACATCAC 59.060 40.000 0.00 0.00 0.00 3.06
2619 2662 4.062293 TCAGGACCACTTTTTACATCACG 58.938 43.478 0.00 0.00 0.00 4.35
2620 2663 4.062293 CAGGACCACTTTTTACATCACGA 58.938 43.478 0.00 0.00 0.00 4.35
2621 2664 4.152402 CAGGACCACTTTTTACATCACGAG 59.848 45.833 0.00 0.00 0.00 4.18
2622 2665 4.039973 AGGACCACTTTTTACATCACGAGA 59.960 41.667 0.00 0.00 0.00 4.04
2623 2666 4.389077 GGACCACTTTTTACATCACGAGAG 59.611 45.833 0.00 0.00 0.00 3.20
2624 2667 4.315803 ACCACTTTTTACATCACGAGAGG 58.684 43.478 0.00 0.00 0.00 3.69
2625 2668 4.039973 ACCACTTTTTACATCACGAGAGGA 59.960 41.667 0.51 0.00 0.00 3.71
2626 2669 5.178797 CCACTTTTTACATCACGAGAGGAT 58.821 41.667 0.51 0.00 0.00 3.24
2627 2670 6.070995 ACCACTTTTTACATCACGAGAGGATA 60.071 38.462 0.51 0.00 0.00 2.59
2628 2671 6.816640 CCACTTTTTACATCACGAGAGGATAA 59.183 38.462 0.51 0.00 0.00 1.75
2629 2672 7.333423 CCACTTTTTACATCACGAGAGGATAAA 59.667 37.037 0.51 0.77 0.00 1.40
2630 2673 8.717821 CACTTTTTACATCACGAGAGGATAAAA 58.282 33.333 0.51 6.30 0.00 1.52
2631 2674 9.280174 ACTTTTTACATCACGAGAGGATAAAAA 57.720 29.630 17.23 17.23 34.27 1.94
2632 2675 9.543018 CTTTTTACATCACGAGAGGATAAAAAC 57.457 33.333 15.75 0.00 33.28 2.43
2633 2676 6.880822 TTACATCACGAGAGGATAAAAACG 57.119 37.500 0.51 0.00 0.00 3.60
2634 2677 3.617263 ACATCACGAGAGGATAAAAACGC 59.383 43.478 0.51 0.00 0.00 4.84
2635 2678 3.587797 TCACGAGAGGATAAAAACGCT 57.412 42.857 0.00 0.00 0.00 5.07
2636 2679 3.250744 TCACGAGAGGATAAAAACGCTG 58.749 45.455 0.00 0.00 0.00 5.18
2637 2680 2.000447 ACGAGAGGATAAAAACGCTGC 59.000 47.619 0.00 0.00 0.00 5.25
2638 2681 2.271800 CGAGAGGATAAAAACGCTGCT 58.728 47.619 0.00 0.00 0.00 4.24
2639 2682 2.282820 CGAGAGGATAAAAACGCTGCTC 59.717 50.000 0.00 0.00 0.00 4.26
2640 2683 2.609916 GAGAGGATAAAAACGCTGCTCC 59.390 50.000 0.00 0.00 0.00 4.70
2641 2684 2.027192 AGAGGATAAAAACGCTGCTCCA 60.027 45.455 0.00 0.00 0.00 3.86
2642 2685 2.747446 GAGGATAAAAACGCTGCTCCAA 59.253 45.455 0.00 0.00 0.00 3.53
2643 2686 3.356290 AGGATAAAAACGCTGCTCCAAT 58.644 40.909 0.00 0.00 0.00 3.16
2644 2687 4.523083 AGGATAAAAACGCTGCTCCAATA 58.477 39.130 0.00 0.00 0.00 1.90
2645 2688 4.947388 AGGATAAAAACGCTGCTCCAATAA 59.053 37.500 0.00 0.00 0.00 1.40
2646 2689 5.417580 AGGATAAAAACGCTGCTCCAATAAA 59.582 36.000 0.00 0.00 0.00 1.40
2647 2690 6.096846 AGGATAAAAACGCTGCTCCAATAAAT 59.903 34.615 0.00 0.00 0.00 1.40
2648 2691 7.284489 AGGATAAAAACGCTGCTCCAATAAATA 59.716 33.333 0.00 0.00 0.00 1.40
2649 2692 7.918562 GGATAAAAACGCTGCTCCAATAAATAA 59.081 33.333 0.00 0.00 0.00 1.40
2650 2693 9.463443 GATAAAAACGCTGCTCCAATAAATAAT 57.537 29.630 0.00 0.00 0.00 1.28
2651 2694 7.524294 AAAAACGCTGCTCCAATAAATAATG 57.476 32.000 0.00 0.00 0.00 1.90
2652 2695 5.835113 AACGCTGCTCCAATAAATAATGT 57.165 34.783 0.00 0.00 0.00 2.71
2653 2696 6.935741 AACGCTGCTCCAATAAATAATGTA 57.064 33.333 0.00 0.00 0.00 2.29
2654 2697 6.545504 ACGCTGCTCCAATAAATAATGTAG 57.454 37.500 0.00 0.00 0.00 2.74
2655 2698 6.288294 ACGCTGCTCCAATAAATAATGTAGA 58.712 36.000 0.00 0.00 0.00 2.59
2656 2699 6.936900 ACGCTGCTCCAATAAATAATGTAGAT 59.063 34.615 0.00 0.00 0.00 1.98
2657 2700 7.095060 ACGCTGCTCCAATAAATAATGTAGATG 60.095 37.037 0.00 0.00 0.00 2.90
2658 2701 7.025963 GCTGCTCCAATAAATAATGTAGATGC 58.974 38.462 0.00 0.00 0.00 3.91
2659 2702 7.308770 GCTGCTCCAATAAATAATGTAGATGCA 60.309 37.037 0.00 0.00 0.00 3.96
2660 2703 8.462589 TGCTCCAATAAATAATGTAGATGCAA 57.537 30.769 0.00 0.00 0.00 4.08
2661 2704 8.911965 TGCTCCAATAAATAATGTAGATGCAAA 58.088 29.630 0.00 0.00 0.00 3.68
2662 2705 9.918630 GCTCCAATAAATAATGTAGATGCAAAT 57.081 29.630 0.00 0.00 0.00 2.32
2682 2725 9.793259 TGCAAATATTTTTACTAGGGAGATAGG 57.207 33.333 0.00 0.00 0.00 2.57
2683 2726 9.232473 GCAAATATTTTTACTAGGGAGATAGGG 57.768 37.037 0.00 0.00 0.00 3.53
2684 2727 9.232473 CAAATATTTTTACTAGGGAGATAGGGC 57.768 37.037 0.00 0.00 0.00 5.19
2685 2728 4.950205 TTTTTACTAGGGAGATAGGGCG 57.050 45.455 0.00 0.00 0.00 6.13
2686 2729 3.607490 TTTACTAGGGAGATAGGGCGT 57.393 47.619 0.00 0.00 0.00 5.68
2687 2730 2.581216 TACTAGGGAGATAGGGCGTG 57.419 55.000 0.00 0.00 0.00 5.34
2688 2731 0.851469 ACTAGGGAGATAGGGCGTGA 59.149 55.000 0.00 0.00 0.00 4.35
2689 2732 1.429687 ACTAGGGAGATAGGGCGTGAT 59.570 52.381 0.00 0.00 0.00 3.06
2690 2733 1.821753 CTAGGGAGATAGGGCGTGATG 59.178 57.143 0.00 0.00 0.00 3.07
2691 2734 0.105453 AGGGAGATAGGGCGTGATGT 60.105 55.000 0.00 0.00 0.00 3.06
2692 2735 1.147191 AGGGAGATAGGGCGTGATGTA 59.853 52.381 0.00 0.00 0.00 2.29
2693 2736 1.968493 GGGAGATAGGGCGTGATGTAA 59.032 52.381 0.00 0.00 0.00 2.41
2694 2737 2.367567 GGGAGATAGGGCGTGATGTAAA 59.632 50.000 0.00 0.00 0.00 2.01
2695 2738 3.181458 GGGAGATAGGGCGTGATGTAAAA 60.181 47.826 0.00 0.00 0.00 1.52
2696 2739 4.505039 GGGAGATAGGGCGTGATGTAAAAT 60.505 45.833 0.00 0.00 0.00 1.82
2697 2740 5.279809 GGGAGATAGGGCGTGATGTAAAATA 60.280 44.000 0.00 0.00 0.00 1.40
2698 2741 5.869888 GGAGATAGGGCGTGATGTAAAATAG 59.130 44.000 0.00 0.00 0.00 1.73
2699 2742 5.794894 AGATAGGGCGTGATGTAAAATAGG 58.205 41.667 0.00 0.00 0.00 2.57
2700 2743 3.926058 AGGGCGTGATGTAAAATAGGT 57.074 42.857 0.00 0.00 0.00 3.08
2701 2744 3.805207 AGGGCGTGATGTAAAATAGGTC 58.195 45.455 0.00 0.00 0.00 3.85
2702 2745 3.199071 AGGGCGTGATGTAAAATAGGTCA 59.801 43.478 0.00 0.00 0.00 4.02
2703 2746 4.134563 GGGCGTGATGTAAAATAGGTCAT 58.865 43.478 0.00 0.00 0.00 3.06
2704 2747 4.213482 GGGCGTGATGTAAAATAGGTCATC 59.787 45.833 0.00 0.00 37.68 2.92
2705 2748 4.814234 GGCGTGATGTAAAATAGGTCATCA 59.186 41.667 0.00 0.00 42.48 3.07
2706 2749 5.295787 GGCGTGATGTAAAATAGGTCATCAA 59.704 40.000 8.00 0.00 44.90 2.57
2707 2750 6.422223 GCGTGATGTAAAATAGGTCATCAAG 58.578 40.000 12.73 12.73 44.90 3.02
2708 2751 6.037172 GCGTGATGTAAAATAGGTCATCAAGT 59.963 38.462 16.25 0.00 44.90 3.16
2709 2752 7.401860 CGTGATGTAAAATAGGTCATCAAGTG 58.598 38.462 8.00 0.07 44.90 3.16
2710 2753 7.465916 CGTGATGTAAAATAGGTCATCAAGTGG 60.466 40.741 8.00 0.00 44.90 4.00
2711 2754 7.336931 GTGATGTAAAATAGGTCATCAAGTGGT 59.663 37.037 8.00 0.00 44.90 4.16
2712 2755 8.544622 TGATGTAAAATAGGTCATCAAGTGGTA 58.455 33.333 0.00 0.00 42.01 3.25
2713 2756 9.561069 GATGTAAAATAGGTCATCAAGTGGTAT 57.439 33.333 0.00 0.00 37.30 2.73
2721 2764 7.100458 AGGTCATCAAGTGGTATAAATTTGC 57.900 36.000 0.00 0.00 0.00 3.68
2722 2765 6.663093 AGGTCATCAAGTGGTATAAATTTGCA 59.337 34.615 0.00 0.00 0.00 4.08
2723 2766 7.342799 AGGTCATCAAGTGGTATAAATTTGCAT 59.657 33.333 0.00 0.00 0.00 3.96
2724 2767 7.649306 GGTCATCAAGTGGTATAAATTTGCATC 59.351 37.037 0.00 0.00 0.00 3.91
2725 2768 8.190122 GTCATCAAGTGGTATAAATTTGCATCA 58.810 33.333 0.00 0.00 0.00 3.07
2726 2769 8.190122 TCATCAAGTGGTATAAATTTGCATCAC 58.810 33.333 0.00 5.16 0.00 3.06
2727 2770 7.701539 TCAAGTGGTATAAATTTGCATCACT 57.298 32.000 11.83 11.83 36.00 3.41
2728 2771 8.121305 TCAAGTGGTATAAATTTGCATCACTT 57.879 30.769 19.17 19.17 42.58 3.16
2729 2772 9.237187 TCAAGTGGTATAAATTTGCATCACTTA 57.763 29.630 22.13 13.40 40.72 2.24
2756 2799 7.664082 CTCTCGAGCATATTTTTACATGGAT 57.336 36.000 7.81 0.00 0.00 3.41
2757 2800 7.658179 TCTCGAGCATATTTTTACATGGATC 57.342 36.000 7.81 0.00 0.00 3.36
2758 2801 7.216494 TCTCGAGCATATTTTTACATGGATCA 58.784 34.615 7.81 0.00 0.00 2.92
2759 2802 7.171508 TCTCGAGCATATTTTTACATGGATCAC 59.828 37.037 7.81 0.00 0.00 3.06
2760 2803 6.765512 TCGAGCATATTTTTACATGGATCACA 59.234 34.615 0.00 0.00 0.00 3.58
2761 2804 7.041848 TCGAGCATATTTTTACATGGATCACAG 60.042 37.037 0.00 0.00 0.00 3.66
2762 2805 7.281040 AGCATATTTTTACATGGATCACAGG 57.719 36.000 0.00 0.00 36.81 4.00
2764 2807 7.013655 AGCATATTTTTACATGGATCACAGGTC 59.986 37.037 5.03 0.00 40.69 3.85
2765 2808 7.013655 GCATATTTTTACATGGATCACAGGTCT 59.986 37.037 5.03 0.00 40.69 3.85
2766 2809 6.764308 ATTTTTACATGGATCACAGGTCTG 57.236 37.500 5.03 0.00 40.69 3.51
2767 2810 3.912496 TTACATGGATCACAGGTCTGG 57.088 47.619 5.03 0.00 40.69 3.86
2768 2811 1.956869 ACATGGATCACAGGTCTGGA 58.043 50.000 0.00 0.00 40.69 3.86
2769 2812 1.836166 ACATGGATCACAGGTCTGGAG 59.164 52.381 0.00 0.00 40.69 3.86
2770 2813 0.835941 ATGGATCACAGGTCTGGAGC 59.164 55.000 2.87 0.56 34.19 4.70
2771 2814 0.545071 TGGATCACAGGTCTGGAGCA 60.545 55.000 2.87 0.00 34.19 4.26
2772 2815 0.615331 GGATCACAGGTCTGGAGCAA 59.385 55.000 2.87 0.00 34.19 3.91
2773 2816 1.003580 GGATCACAGGTCTGGAGCAAA 59.996 52.381 2.87 0.00 34.19 3.68
2774 2817 2.553028 GGATCACAGGTCTGGAGCAAAA 60.553 50.000 2.87 0.00 34.19 2.44
2775 2818 2.957402 TCACAGGTCTGGAGCAAAAT 57.043 45.000 2.87 0.00 34.19 1.82
2776 2819 3.228188 TCACAGGTCTGGAGCAAAATT 57.772 42.857 2.87 0.00 34.19 1.82
2777 2820 3.565307 TCACAGGTCTGGAGCAAAATTT 58.435 40.909 2.87 0.00 34.19 1.82
2778 2821 3.318839 TCACAGGTCTGGAGCAAAATTTG 59.681 43.478 0.57 0.57 34.19 2.32
2779 2822 2.036346 ACAGGTCTGGAGCAAAATTTGC 59.964 45.455 21.86 21.86 45.40 3.68
2780 2823 4.506451 ACAGGTCTGGAGCAAAATTTGCA 61.506 43.478 29.22 10.77 46.53 4.08
2781 2824 5.779932 ACAGGTCTGGAGCAAAATTTGCAT 61.780 41.667 29.22 16.04 46.53 3.96
2782 2825 7.523439 ACAGGTCTGGAGCAAAATTTGCATC 62.523 44.000 29.22 21.94 46.53 3.91
2818 2861 6.647334 TTTTTACATCATCAAGTGCTCCAA 57.353 33.333 0.00 0.00 0.00 3.53
2819 2862 5.627499 TTTACATCATCAAGTGCTCCAAC 57.373 39.130 0.00 0.00 0.00 3.77
2820 2863 3.144657 ACATCATCAAGTGCTCCAACA 57.855 42.857 0.00 0.00 0.00 3.33
2821 2864 3.079578 ACATCATCAAGTGCTCCAACAG 58.920 45.455 0.00 0.00 0.00 3.16
2822 2865 3.244665 ACATCATCAAGTGCTCCAACAGA 60.245 43.478 0.00 0.00 0.00 3.41
2823 2866 3.708403 TCATCAAGTGCTCCAACAGAT 57.292 42.857 0.00 0.00 0.00 2.90
2824 2867 4.824479 TCATCAAGTGCTCCAACAGATA 57.176 40.909 0.00 0.00 0.00 1.98
2825 2868 5.164620 TCATCAAGTGCTCCAACAGATAA 57.835 39.130 0.00 0.00 0.00 1.75
2826 2869 5.748402 TCATCAAGTGCTCCAACAGATAAT 58.252 37.500 0.00 0.00 0.00 1.28
2827 2870 5.587443 TCATCAAGTGCTCCAACAGATAATG 59.413 40.000 0.00 0.00 0.00 1.90
2828 2871 3.691118 TCAAGTGCTCCAACAGATAATGC 59.309 43.478 0.00 0.00 0.00 3.56
2829 2872 3.354948 AGTGCTCCAACAGATAATGCA 57.645 42.857 0.00 0.00 0.00 3.96
2830 2873 3.689347 AGTGCTCCAACAGATAATGCAA 58.311 40.909 0.00 0.00 0.00 4.08
2831 2874 4.081406 AGTGCTCCAACAGATAATGCAAA 58.919 39.130 0.00 0.00 0.00 3.68
2832 2875 4.708421 AGTGCTCCAACAGATAATGCAAAT 59.292 37.500 0.00 0.00 0.00 2.32
2833 2876 5.887598 AGTGCTCCAACAGATAATGCAAATA 59.112 36.000 0.00 0.00 0.00 1.40
2834 2877 6.377996 AGTGCTCCAACAGATAATGCAAATAA 59.622 34.615 0.00 0.00 0.00 1.40
2835 2878 6.694411 GTGCTCCAACAGATAATGCAAATAAG 59.306 38.462 0.00 0.00 0.00 1.73
2836 2879 6.602803 TGCTCCAACAGATAATGCAAATAAGA 59.397 34.615 0.00 0.00 0.00 2.10
2837 2880 6.914757 GCTCCAACAGATAATGCAAATAAGAC 59.085 38.462 0.00 0.00 0.00 3.01
2838 2881 7.415541 GCTCCAACAGATAATGCAAATAAGACA 60.416 37.037 0.00 0.00 0.00 3.41
2839 2882 7.761409 TCCAACAGATAATGCAAATAAGACAC 58.239 34.615 0.00 0.00 0.00 3.67
2840 2883 6.974622 CCAACAGATAATGCAAATAAGACACC 59.025 38.462 0.00 0.00 0.00 4.16
2841 2884 6.699575 ACAGATAATGCAAATAAGACACCC 57.300 37.500 0.00 0.00 0.00 4.61
2842 2885 5.296780 ACAGATAATGCAAATAAGACACCCG 59.703 40.000 0.00 0.00 0.00 5.28
2843 2886 2.939460 AATGCAAATAAGACACCCGC 57.061 45.000 0.00 0.00 0.00 6.13
2844 2887 1.832883 ATGCAAATAAGACACCCGCA 58.167 45.000 0.00 0.00 0.00 5.69
2845 2888 1.610363 TGCAAATAAGACACCCGCAA 58.390 45.000 0.00 0.00 0.00 4.85
2846 2889 1.539388 TGCAAATAAGACACCCGCAAG 59.461 47.619 0.00 0.00 0.00 4.01
2847 2890 1.810151 GCAAATAAGACACCCGCAAGA 59.190 47.619 0.00 0.00 43.02 3.02
2848 2891 2.414161 GCAAATAAGACACCCGCAAGAC 60.414 50.000 0.00 0.00 43.02 3.01
2849 2892 1.722011 AATAAGACACCCGCAAGACG 58.278 50.000 0.00 0.00 43.15 4.18
2869 2912 3.160545 CGACAACCGTGATGTATTTTGC 58.839 45.455 0.00 0.00 0.00 3.68
2870 2913 3.364465 CGACAACCGTGATGTATTTTGCA 60.364 43.478 0.00 0.00 0.00 4.08
2871 2914 4.541779 GACAACCGTGATGTATTTTGCAA 58.458 39.130 0.00 0.00 0.00 4.08
2872 2915 4.295051 ACAACCGTGATGTATTTTGCAAC 58.705 39.130 0.00 0.00 0.00 4.17
2873 2916 4.202060 ACAACCGTGATGTATTTTGCAACA 60.202 37.500 0.00 0.00 0.00 3.33
2874 2917 3.896122 ACCGTGATGTATTTTGCAACAC 58.104 40.909 0.00 0.90 36.64 3.32
2875 2918 3.568007 ACCGTGATGTATTTTGCAACACT 59.432 39.130 0.00 0.00 37.45 3.55
2876 2919 4.037446 ACCGTGATGTATTTTGCAACACTT 59.963 37.500 0.00 0.00 37.45 3.16
2877 2920 5.239744 ACCGTGATGTATTTTGCAACACTTA 59.760 36.000 0.00 0.00 37.45 2.24
2878 2921 6.072175 ACCGTGATGTATTTTGCAACACTTAT 60.072 34.615 0.00 0.00 37.45 1.73
2879 2922 6.806249 CCGTGATGTATTTTGCAACACTTATT 59.194 34.615 0.00 0.00 37.45 1.40
2880 2923 7.328249 CCGTGATGTATTTTGCAACACTTATTT 59.672 33.333 0.00 0.00 37.45 1.40
2881 2924 8.698854 CGTGATGTATTTTGCAACACTTATTTT 58.301 29.630 0.00 0.00 37.45 1.82
2904 2947 7.921786 TTACATTATCTGTTGGAGTTGAAGG 57.078 36.000 0.00 0.00 39.39 3.46
2905 2948 5.880901 ACATTATCTGTTGGAGTTGAAGGT 58.119 37.500 0.00 0.00 32.90 3.50
2906 2949 6.306987 ACATTATCTGTTGGAGTTGAAGGTT 58.693 36.000 0.00 0.00 32.90 3.50
2907 2950 6.777580 ACATTATCTGTTGGAGTTGAAGGTTT 59.222 34.615 0.00 0.00 32.90 3.27
2908 2951 7.287696 ACATTATCTGTTGGAGTTGAAGGTTTT 59.712 33.333 0.00 0.00 32.90 2.43
2909 2952 7.654022 TTATCTGTTGGAGTTGAAGGTTTTT 57.346 32.000 0.00 0.00 0.00 1.94
2937 2980 8.830201 TGATGGTAAAAATCATTTCTTTGGTG 57.170 30.769 0.00 0.00 0.00 4.17
2938 2981 8.646004 TGATGGTAAAAATCATTTCTTTGGTGA 58.354 29.630 0.00 0.00 0.00 4.02
2939 2982 9.657419 GATGGTAAAAATCATTTCTTTGGTGAT 57.343 29.630 0.00 0.00 34.23 3.06
2940 2983 8.830201 TGGTAAAAATCATTTCTTTGGTGATG 57.170 30.769 0.00 0.00 33.19 3.07
2941 2984 8.428063 TGGTAAAAATCATTTCTTTGGTGATGT 58.572 29.630 0.00 0.00 33.19 3.06
2942 2985 9.921637 GGTAAAAATCATTTCTTTGGTGATGTA 57.078 29.630 0.00 0.00 33.19 2.29
2953 2996 9.672086 TTTCTTTGGTGATGTAAATTTTACTCG 57.328 29.630 17.70 3.41 0.00 4.18
2954 2997 8.610248 TCTTTGGTGATGTAAATTTTACTCGA 57.390 30.769 17.70 1.49 0.00 4.04
2955 2998 9.058174 TCTTTGGTGATGTAAATTTTACTCGAA 57.942 29.630 17.70 8.37 0.00 3.71
2956 2999 9.672086 CTTTGGTGATGTAAATTTTACTCGAAA 57.328 29.630 17.70 13.21 0.00 3.46
2957 3000 9.453325 TTTGGTGATGTAAATTTTACTCGAAAC 57.547 29.630 17.70 10.08 0.00 2.78
2958 3001 8.155821 TGGTGATGTAAATTTTACTCGAAACA 57.844 30.769 17.70 8.80 0.00 2.83
2959 3002 8.622157 TGGTGATGTAAATTTTACTCGAAACAA 58.378 29.630 17.70 3.65 0.00 2.83
2960 3003 9.620660 GGTGATGTAAATTTTACTCGAAACAAT 57.379 29.630 17.70 3.36 0.00 2.71
2965 3008 8.756864 TGTAAATTTTACTCGAAACAATTTGGC 58.243 29.630 17.70 7.35 0.00 4.52
2966 3009 6.446659 AATTTTACTCGAAACAATTTGGCG 57.553 33.333 0.78 2.24 0.00 5.69
2967 3010 4.815040 TTTACTCGAAACAATTTGGCGA 57.185 36.364 0.78 6.28 0.00 5.54
2968 3011 5.365403 TTTACTCGAAACAATTTGGCGAT 57.635 34.783 10.27 5.75 0.00 4.58
2969 3012 6.483385 TTTACTCGAAACAATTTGGCGATA 57.517 33.333 10.27 5.10 0.00 2.92
2970 3013 6.671614 TTACTCGAAACAATTTGGCGATAT 57.328 33.333 10.27 6.36 0.00 1.63
2971 3014 7.773864 TTACTCGAAACAATTTGGCGATATA 57.226 32.000 10.27 5.68 0.00 0.86
2972 3015 6.861065 ACTCGAAACAATTTGGCGATATAT 57.139 33.333 10.27 0.00 0.00 0.86
2973 3016 7.259290 ACTCGAAACAATTTGGCGATATATT 57.741 32.000 10.27 0.00 0.00 1.28
2974 3017 7.703328 ACTCGAAACAATTTGGCGATATATTT 58.297 30.769 10.27 0.00 0.00 1.40
2975 3018 8.188139 ACTCGAAACAATTTGGCGATATATTTT 58.812 29.630 10.27 0.00 0.00 1.82
2976 3019 9.658475 CTCGAAACAATTTGGCGATATATTTTA 57.342 29.630 10.27 0.00 0.00 1.52
2977 3020 9.440784 TCGAAACAATTTGGCGATATATTTTAC 57.559 29.630 0.78 0.00 0.00 2.01
2978 3021 9.227490 CGAAACAATTTGGCGATATATTTTACA 57.773 29.630 0.78 0.00 0.00 2.41
3002 3045 9.630098 ACATCAACTATTGAAAATTGTCACATC 57.370 29.630 0.00 0.00 43.95 3.06
3003 3046 9.079833 CATCAACTATTGAAAATTGTCACATCC 57.920 33.333 0.00 0.00 43.95 3.51
3004 3047 7.601856 TCAACTATTGAAAATTGTCACATCCC 58.398 34.615 0.00 0.00 36.59 3.85
3005 3048 7.451255 TCAACTATTGAAAATTGTCACATCCCT 59.549 33.333 0.00 0.00 36.59 4.20
3006 3049 8.739039 CAACTATTGAAAATTGTCACATCCCTA 58.261 33.333 0.00 0.00 0.00 3.53
3007 3050 8.511604 ACTATTGAAAATTGTCACATCCCTAG 57.488 34.615 0.00 0.00 0.00 3.02
3008 3051 5.643379 TTGAAAATTGTCACATCCCTAGC 57.357 39.130 0.00 0.00 0.00 3.42
3009 3052 4.922206 TGAAAATTGTCACATCCCTAGCT 58.078 39.130 0.00 0.00 0.00 3.32
3010 3053 4.701651 TGAAAATTGTCACATCCCTAGCTG 59.298 41.667 0.00 0.00 0.00 4.24
3011 3054 2.338577 ATTGTCACATCCCTAGCTGC 57.661 50.000 0.00 0.00 0.00 5.25
3012 3055 1.279496 TTGTCACATCCCTAGCTGCT 58.721 50.000 7.57 7.57 0.00 4.24
3013 3056 0.538584 TGTCACATCCCTAGCTGCTG 59.461 55.000 13.43 2.21 0.00 4.41
3014 3057 0.179062 GTCACATCCCTAGCTGCTGG 60.179 60.000 13.43 9.59 0.00 4.85
3015 3058 0.618680 TCACATCCCTAGCTGCTGGT 60.619 55.000 13.43 0.00 0.00 4.00
3016 3059 1.123077 CACATCCCTAGCTGCTGGTA 58.877 55.000 13.43 0.00 0.00 3.25
3017 3060 1.069823 CACATCCCTAGCTGCTGGTAG 59.930 57.143 19.56 19.56 42.22 3.18
3018 3061 1.343478 ACATCCCTAGCTGCTGGTAGT 60.343 52.381 23.07 6.38 41.31 2.73
3019 3062 1.069823 CATCCCTAGCTGCTGGTAGTG 59.930 57.143 23.07 15.22 41.31 2.74
3020 3063 1.144936 CCCTAGCTGCTGGTAGTGC 59.855 63.158 23.07 0.95 41.31 4.40
3021 3064 1.333636 CCCTAGCTGCTGGTAGTGCT 61.334 60.000 23.07 7.44 41.31 4.40
3022 3065 0.103937 CCTAGCTGCTGGTAGTGCTC 59.896 60.000 23.07 0.00 41.31 4.26
3023 3066 1.110442 CTAGCTGCTGGTAGTGCTCT 58.890 55.000 18.58 0.00 38.91 4.09
3024 3067 2.302260 CTAGCTGCTGGTAGTGCTCTA 58.698 52.381 18.58 0.00 38.91 2.43
3025 3068 1.110442 AGCTGCTGGTAGTGCTCTAG 58.890 55.000 0.00 0.00 0.00 2.43
3026 3069 0.103937 GCTGCTGGTAGTGCTCTAGG 59.896 60.000 0.00 0.00 0.00 3.02
3027 3070 0.103937 CTGCTGGTAGTGCTCTAGGC 59.896 60.000 0.00 2.69 42.22 3.93
3028 3071 0.324738 TGCTGGTAGTGCTCTAGGCT 60.325 55.000 12.97 0.00 42.39 4.58
3029 3072 1.063942 TGCTGGTAGTGCTCTAGGCTA 60.064 52.381 12.97 0.00 42.39 3.93
3030 3073 1.611491 GCTGGTAGTGCTCTAGGCTAG 59.389 57.143 15.56 15.56 42.39 3.42
3031 3074 1.611491 CTGGTAGTGCTCTAGGCTAGC 59.389 57.143 16.85 6.04 42.39 3.42
3032 3075 1.215673 TGGTAGTGCTCTAGGCTAGCT 59.784 52.381 16.85 10.22 40.73 3.32
3033 3076 2.312390 GGTAGTGCTCTAGGCTAGCTT 58.688 52.381 16.85 10.11 40.73 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 251 5.104610 ACATGGTTGATCTAGACTTGCATCT 60.105 40.000 0.00 0.00 0.00 2.90
406 412 2.452813 GGAAAATGAGCTCGCGCGA 61.453 57.895 32.60 32.60 42.32 5.87
528 534 5.595952 GGAAATCAATTAGGTGAGCTTCCAT 59.404 40.000 10.72 0.00 40.24 3.41
675 681 1.021968 ACCGGTGACTTCTTTGTTGC 58.978 50.000 6.12 0.00 0.00 4.17
860 867 4.447734 CAATGGCTTGCCTTCCCT 57.552 55.556 13.18 0.00 0.00 4.20
891 899 0.991920 GACACTGGGAGGGGATTGAA 59.008 55.000 0.00 0.00 0.00 2.69
944 952 2.020016 CGATCAAAACGCGGCGAG 59.980 61.111 30.94 11.17 0.00 5.03
1450 1467 0.179235 GCGCAATGCAAGCATGTTTG 60.179 50.000 17.11 17.11 45.45 2.93
1483 1502 1.989864 TCGTCATTCATGCACGTACAC 59.010 47.619 0.00 0.00 34.92 2.90
1538 1557 4.834453 CTCAGCCCCTGCGCAGAG 62.834 72.222 38.06 26.29 44.33 3.35
1784 1806 0.179020 CTTGGAACACCTGGTGCAGA 60.179 55.000 26.20 5.58 39.29 4.26
2340 2363 5.751586 AGGAAAACAAAGTCCTTGACAGTA 58.248 37.500 0.00 0.00 41.73 2.74
2362 2385 1.202031 GCACCGCTGGAAACGAATTAG 60.202 52.381 1.50 0.00 0.00 1.73
2364 2387 1.579429 GCACCGCTGGAAACGAATT 59.421 52.632 1.50 0.00 0.00 2.17
2365 2388 2.677003 CGCACCGCTGGAAACGAAT 61.677 57.895 1.50 0.00 0.00 3.34
2383 2406 7.701809 AGCTCTACATCTACGAAAATAAAGC 57.298 36.000 0.00 0.00 0.00 3.51
2404 2427 3.571401 CCCTGTGTTTTCTCAATCAAGCT 59.429 43.478 0.00 0.00 0.00 3.74
2405 2428 3.569701 TCCCTGTGTTTTCTCAATCAAGC 59.430 43.478 0.00 0.00 0.00 4.01
2447 2487 8.814038 AGCTTGATCAAGAATTAAACTGGTAT 57.186 30.769 34.43 0.67 40.79 2.73
2485 2526 7.907214 AGAGACACACAATTTACAGTATTCC 57.093 36.000 0.00 0.00 0.00 3.01
2500 2541 5.812642 TCTTTCAACAGAAGAAGAGACACAC 59.187 40.000 0.00 0.00 30.60 3.82
2504 2545 9.301153 GATCTATCTTTCAACAGAAGAAGAGAC 57.699 37.037 0.00 0.00 36.77 3.36
2510 2551 7.364232 GGTCTGGATCTATCTTTCAACAGAAGA 60.364 40.741 0.00 0.00 35.74 2.87
2511 2552 6.760770 GGTCTGGATCTATCTTTCAACAGAAG 59.239 42.308 0.00 0.00 35.74 2.85
2516 2559 5.163499 ACTCGGTCTGGATCTATCTTTCAAC 60.163 44.000 0.00 0.00 0.00 3.18
2523 2566 1.271102 GCCACTCGGTCTGGATCTATC 59.729 57.143 0.00 0.00 33.28 2.08
2536 2579 4.805192 CCCAAAATTAATTCATGCCACTCG 59.195 41.667 0.10 0.00 0.00 4.18
2537 2580 5.733676 ACCCAAAATTAATTCATGCCACTC 58.266 37.500 0.10 0.00 0.00 3.51
2538 2581 5.760484 ACCCAAAATTAATTCATGCCACT 57.240 34.783 0.10 0.00 0.00 4.00
2539 2582 8.504812 AATAACCCAAAATTAATTCATGCCAC 57.495 30.769 0.10 0.00 0.00 5.01
2579 2622 9.379770 TGGTCCTGATCTATTTTACATCATCTA 57.620 33.333 0.00 0.00 0.00 1.98
2581 2624 8.153550 AGTGGTCCTGATCTATTTTACATCATC 58.846 37.037 0.00 0.00 0.00 2.92
2582 2625 8.038862 AGTGGTCCTGATCTATTTTACATCAT 57.961 34.615 0.00 0.00 0.00 2.45
2583 2626 7.437713 AGTGGTCCTGATCTATTTTACATCA 57.562 36.000 0.00 0.00 0.00 3.07
2584 2627 8.738645 AAAGTGGTCCTGATCTATTTTACATC 57.261 34.615 0.00 0.00 0.00 3.06
2585 2628 9.533831 AAAAAGTGGTCCTGATCTATTTTACAT 57.466 29.630 0.00 0.00 0.00 2.29
2586 2629 8.934023 AAAAAGTGGTCCTGATCTATTTTACA 57.066 30.769 0.00 0.00 0.00 2.41
2589 2632 8.934023 TGTAAAAAGTGGTCCTGATCTATTTT 57.066 30.769 0.00 0.00 0.00 1.82
2590 2633 9.178758 GATGTAAAAAGTGGTCCTGATCTATTT 57.821 33.333 0.00 0.00 0.00 1.40
2591 2634 8.328758 TGATGTAAAAAGTGGTCCTGATCTATT 58.671 33.333 0.00 0.00 0.00 1.73
2592 2635 7.770897 GTGATGTAAAAAGTGGTCCTGATCTAT 59.229 37.037 0.00 0.00 0.00 1.98
2593 2636 7.103641 GTGATGTAAAAAGTGGTCCTGATCTA 58.896 38.462 0.00 0.00 0.00 1.98
2594 2637 5.940470 GTGATGTAAAAAGTGGTCCTGATCT 59.060 40.000 0.00 0.00 0.00 2.75
2595 2638 5.163854 CGTGATGTAAAAAGTGGTCCTGATC 60.164 44.000 0.00 0.00 0.00 2.92
2596 2639 4.695455 CGTGATGTAAAAAGTGGTCCTGAT 59.305 41.667 0.00 0.00 0.00 2.90
2597 2640 4.062293 CGTGATGTAAAAAGTGGTCCTGA 58.938 43.478 0.00 0.00 0.00 3.86
2598 2641 4.062293 TCGTGATGTAAAAAGTGGTCCTG 58.938 43.478 0.00 0.00 0.00 3.86
2599 2642 4.039973 TCTCGTGATGTAAAAAGTGGTCCT 59.960 41.667 0.00 0.00 0.00 3.85
2600 2643 4.312443 TCTCGTGATGTAAAAAGTGGTCC 58.688 43.478 0.00 0.00 0.00 4.46
2601 2644 4.389077 CCTCTCGTGATGTAAAAAGTGGTC 59.611 45.833 0.00 0.00 0.00 4.02
2602 2645 4.039973 TCCTCTCGTGATGTAAAAAGTGGT 59.960 41.667 0.00 0.00 0.00 4.16
2603 2646 4.566004 TCCTCTCGTGATGTAAAAAGTGG 58.434 43.478 0.00 0.00 0.00 4.00
2604 2647 7.827819 TTATCCTCTCGTGATGTAAAAAGTG 57.172 36.000 0.00 0.00 0.00 3.16
2605 2648 8.842358 TTTTATCCTCTCGTGATGTAAAAAGT 57.158 30.769 8.25 0.00 0.00 2.66
2606 2649 9.543018 GTTTTTATCCTCTCGTGATGTAAAAAG 57.457 33.333 16.31 0.00 28.17 2.27
2607 2650 8.225107 CGTTTTTATCCTCTCGTGATGTAAAAA 58.775 33.333 14.07 14.07 0.00 1.94
2608 2651 7.622672 GCGTTTTTATCCTCTCGTGATGTAAAA 60.623 37.037 0.00 0.00 0.00 1.52
2609 2652 6.183360 GCGTTTTTATCCTCTCGTGATGTAAA 60.183 38.462 0.00 0.00 0.00 2.01
2610 2653 5.290158 GCGTTTTTATCCTCTCGTGATGTAA 59.710 40.000 0.00 0.00 0.00 2.41
2611 2654 4.802039 GCGTTTTTATCCTCTCGTGATGTA 59.198 41.667 0.00 0.00 0.00 2.29
2612 2655 3.617263 GCGTTTTTATCCTCTCGTGATGT 59.383 43.478 0.00 0.00 0.00 3.06
2613 2656 3.865745 AGCGTTTTTATCCTCTCGTGATG 59.134 43.478 0.00 0.00 0.00 3.07
2614 2657 3.865745 CAGCGTTTTTATCCTCTCGTGAT 59.134 43.478 0.00 0.00 0.00 3.06
2615 2658 3.250744 CAGCGTTTTTATCCTCTCGTGA 58.749 45.455 0.00 0.00 0.00 4.35
2616 2659 2.222819 GCAGCGTTTTTATCCTCTCGTG 60.223 50.000 0.00 0.00 0.00 4.35
2617 2660 2.000447 GCAGCGTTTTTATCCTCTCGT 59.000 47.619 0.00 0.00 0.00 4.18
2618 2661 2.271800 AGCAGCGTTTTTATCCTCTCG 58.728 47.619 0.00 0.00 0.00 4.04
2619 2662 2.609916 GGAGCAGCGTTTTTATCCTCTC 59.390 50.000 0.00 0.00 0.00 3.20
2620 2663 2.027192 TGGAGCAGCGTTTTTATCCTCT 60.027 45.455 0.00 0.00 0.00 3.69
2621 2664 2.356135 TGGAGCAGCGTTTTTATCCTC 58.644 47.619 0.00 0.00 0.00 3.71
2622 2665 2.489938 TGGAGCAGCGTTTTTATCCT 57.510 45.000 0.00 0.00 0.00 3.24
2623 2666 3.782889 ATTGGAGCAGCGTTTTTATCC 57.217 42.857 0.00 0.00 0.00 2.59
2624 2667 8.850454 TTATTTATTGGAGCAGCGTTTTTATC 57.150 30.769 0.00 0.00 0.00 1.75
2625 2668 9.248291 CATTATTTATTGGAGCAGCGTTTTTAT 57.752 29.630 0.00 0.00 0.00 1.40
2626 2669 8.247562 ACATTATTTATTGGAGCAGCGTTTTTA 58.752 29.630 0.00 0.00 0.00 1.52
2627 2670 7.096551 ACATTATTTATTGGAGCAGCGTTTTT 58.903 30.769 0.00 0.00 0.00 1.94
2628 2671 6.630071 ACATTATTTATTGGAGCAGCGTTTT 58.370 32.000 0.00 0.00 0.00 2.43
2629 2672 6.207691 ACATTATTTATTGGAGCAGCGTTT 57.792 33.333 0.00 0.00 0.00 3.60
2630 2673 5.835113 ACATTATTTATTGGAGCAGCGTT 57.165 34.783 0.00 0.00 0.00 4.84
2631 2674 6.288294 TCTACATTATTTATTGGAGCAGCGT 58.712 36.000 0.00 0.00 0.00 5.07
2632 2675 6.785488 TCTACATTATTTATTGGAGCAGCG 57.215 37.500 0.00 0.00 0.00 5.18
2633 2676 7.025963 GCATCTACATTATTTATTGGAGCAGC 58.974 38.462 0.00 0.00 0.00 5.25
2634 2677 8.102800 TGCATCTACATTATTTATTGGAGCAG 57.897 34.615 0.00 0.00 0.00 4.24
2635 2678 8.462589 TTGCATCTACATTATTTATTGGAGCA 57.537 30.769 0.00 0.00 0.00 4.26
2636 2679 9.918630 ATTTGCATCTACATTATTTATTGGAGC 57.081 29.630 0.00 0.00 0.00 4.70
2656 2699 9.793259 CCTATCTCCCTAGTAAAAATATTTGCA 57.207 33.333 0.39 0.00 34.02 4.08
2657 2700 9.232473 CCCTATCTCCCTAGTAAAAATATTTGC 57.768 37.037 0.39 0.00 0.00 3.68
2658 2701 9.232473 GCCCTATCTCCCTAGTAAAAATATTTG 57.768 37.037 0.39 0.00 0.00 2.32
2659 2702 8.101419 CGCCCTATCTCCCTAGTAAAAATATTT 58.899 37.037 0.00 0.00 0.00 1.40
2660 2703 7.237055 ACGCCCTATCTCCCTAGTAAAAATATT 59.763 37.037 0.00 0.00 0.00 1.28
2661 2704 6.729569 ACGCCCTATCTCCCTAGTAAAAATAT 59.270 38.462 0.00 0.00 0.00 1.28
2662 2705 6.014840 CACGCCCTATCTCCCTAGTAAAAATA 60.015 42.308 0.00 0.00 0.00 1.40
2663 2706 4.906060 ACGCCCTATCTCCCTAGTAAAAAT 59.094 41.667 0.00 0.00 0.00 1.82
2664 2707 4.100498 CACGCCCTATCTCCCTAGTAAAAA 59.900 45.833 0.00 0.00 0.00 1.94
2665 2708 3.640029 CACGCCCTATCTCCCTAGTAAAA 59.360 47.826 0.00 0.00 0.00 1.52
2666 2709 3.117398 TCACGCCCTATCTCCCTAGTAAA 60.117 47.826 0.00 0.00 0.00 2.01
2667 2710 2.444388 TCACGCCCTATCTCCCTAGTAA 59.556 50.000 0.00 0.00 0.00 2.24
2668 2711 2.060275 TCACGCCCTATCTCCCTAGTA 58.940 52.381 0.00 0.00 0.00 1.82
2669 2712 0.851469 TCACGCCCTATCTCCCTAGT 59.149 55.000 0.00 0.00 0.00 2.57
2670 2713 1.821753 CATCACGCCCTATCTCCCTAG 59.178 57.143 0.00 0.00 0.00 3.02
2671 2714 1.147191 ACATCACGCCCTATCTCCCTA 59.853 52.381 0.00 0.00 0.00 3.53
2672 2715 0.105453 ACATCACGCCCTATCTCCCT 60.105 55.000 0.00 0.00 0.00 4.20
2673 2716 1.629043 TACATCACGCCCTATCTCCC 58.371 55.000 0.00 0.00 0.00 4.30
2674 2717 3.746045 TTTACATCACGCCCTATCTCC 57.254 47.619 0.00 0.00 0.00 3.71
2675 2718 5.869888 CCTATTTTACATCACGCCCTATCTC 59.130 44.000 0.00 0.00 0.00 2.75
2676 2719 5.307196 ACCTATTTTACATCACGCCCTATCT 59.693 40.000 0.00 0.00 0.00 1.98
2677 2720 5.548406 ACCTATTTTACATCACGCCCTATC 58.452 41.667 0.00 0.00 0.00 2.08
2678 2721 5.071250 TGACCTATTTTACATCACGCCCTAT 59.929 40.000 0.00 0.00 0.00 2.57
2679 2722 4.406326 TGACCTATTTTACATCACGCCCTA 59.594 41.667 0.00 0.00 0.00 3.53
2680 2723 3.199071 TGACCTATTTTACATCACGCCCT 59.801 43.478 0.00 0.00 0.00 5.19
2681 2724 3.537580 TGACCTATTTTACATCACGCCC 58.462 45.455 0.00 0.00 0.00 6.13
2682 2725 4.814234 TGATGACCTATTTTACATCACGCC 59.186 41.667 0.00 0.00 42.31 5.68
2683 2726 5.984233 TGATGACCTATTTTACATCACGC 57.016 39.130 0.00 0.00 42.31 5.34
2684 2727 7.401860 CACTTGATGACCTATTTTACATCACG 58.598 38.462 0.00 0.00 45.27 4.35
2685 2728 7.336931 ACCACTTGATGACCTATTTTACATCAC 59.663 37.037 0.00 0.00 45.27 3.06
2686 2729 7.402054 ACCACTTGATGACCTATTTTACATCA 58.598 34.615 0.00 0.00 44.40 3.07
2687 2730 7.865706 ACCACTTGATGACCTATTTTACATC 57.134 36.000 0.00 0.00 39.35 3.06
2695 2738 8.850156 GCAAATTTATACCACTTGATGACCTAT 58.150 33.333 0.00 0.00 0.00 2.57
2696 2739 7.831690 TGCAAATTTATACCACTTGATGACCTA 59.168 33.333 0.00 0.00 0.00 3.08
2697 2740 6.663093 TGCAAATTTATACCACTTGATGACCT 59.337 34.615 0.00 0.00 0.00 3.85
2698 2741 6.862209 TGCAAATTTATACCACTTGATGACC 58.138 36.000 0.00 0.00 0.00 4.02
2699 2742 8.190122 TGATGCAAATTTATACCACTTGATGAC 58.810 33.333 0.00 0.00 0.00 3.06
2700 2743 8.190122 GTGATGCAAATTTATACCACTTGATGA 58.810 33.333 0.00 0.00 0.00 2.92
2701 2744 8.192774 AGTGATGCAAATTTATACCACTTGATG 58.807 33.333 0.00 0.00 30.42 3.07
2702 2745 8.297470 AGTGATGCAAATTTATACCACTTGAT 57.703 30.769 0.00 0.00 30.42 2.57
2703 2746 7.701539 AGTGATGCAAATTTATACCACTTGA 57.298 32.000 0.00 0.00 30.42 3.02
2732 2775 7.386025 TGATCCATGTAAAAATATGCTCGAGAG 59.614 37.037 18.75 0.00 0.00 3.20
2733 2776 7.171508 GTGATCCATGTAAAAATATGCTCGAGA 59.828 37.037 18.75 1.31 0.00 4.04
2734 2777 7.041848 TGTGATCCATGTAAAAATATGCTCGAG 60.042 37.037 8.45 8.45 0.00 4.04
2735 2778 6.765512 TGTGATCCATGTAAAAATATGCTCGA 59.234 34.615 0.00 0.00 0.00 4.04
2736 2779 6.958255 TGTGATCCATGTAAAAATATGCTCG 58.042 36.000 0.00 0.00 0.00 5.03
2737 2780 7.013655 ACCTGTGATCCATGTAAAAATATGCTC 59.986 37.037 0.00 0.00 0.00 4.26
2738 2781 6.835488 ACCTGTGATCCATGTAAAAATATGCT 59.165 34.615 0.00 0.00 0.00 3.79
2739 2782 7.013655 AGACCTGTGATCCATGTAAAAATATGC 59.986 37.037 0.00 0.00 0.00 3.14
2740 2783 8.347771 CAGACCTGTGATCCATGTAAAAATATG 58.652 37.037 0.00 0.00 0.00 1.78
2741 2784 7.503566 CCAGACCTGTGATCCATGTAAAAATAT 59.496 37.037 0.00 0.00 0.00 1.28
2742 2785 6.828273 CCAGACCTGTGATCCATGTAAAAATA 59.172 38.462 0.00 0.00 0.00 1.40
2743 2786 5.653769 CCAGACCTGTGATCCATGTAAAAAT 59.346 40.000 0.00 0.00 0.00 1.82
2744 2787 5.009631 CCAGACCTGTGATCCATGTAAAAA 58.990 41.667 0.00 0.00 0.00 1.94
2745 2788 4.288366 TCCAGACCTGTGATCCATGTAAAA 59.712 41.667 0.00 0.00 0.00 1.52
2746 2789 3.843619 TCCAGACCTGTGATCCATGTAAA 59.156 43.478 0.00 0.00 0.00 2.01
2747 2790 3.449918 TCCAGACCTGTGATCCATGTAA 58.550 45.455 0.00 0.00 0.00 2.41
2748 2791 3.033909 CTCCAGACCTGTGATCCATGTA 58.966 50.000 0.00 0.00 0.00 2.29
2749 2792 1.836166 CTCCAGACCTGTGATCCATGT 59.164 52.381 0.00 0.00 0.00 3.21
2750 2793 1.474677 GCTCCAGACCTGTGATCCATG 60.475 57.143 0.00 0.00 0.00 3.66
2751 2794 0.835941 GCTCCAGACCTGTGATCCAT 59.164 55.000 0.00 0.00 0.00 3.41
2752 2795 0.545071 TGCTCCAGACCTGTGATCCA 60.545 55.000 0.00 0.00 0.00 3.41
2753 2796 0.615331 TTGCTCCAGACCTGTGATCC 59.385 55.000 0.00 0.00 0.00 3.36
2754 2797 2.479566 TTTGCTCCAGACCTGTGATC 57.520 50.000 0.00 0.00 0.00 2.92
2755 2798 2.957402 TTTTGCTCCAGACCTGTGAT 57.043 45.000 0.00 0.00 0.00 3.06
2756 2799 2.957402 ATTTTGCTCCAGACCTGTGA 57.043 45.000 0.00 0.00 0.00 3.58
2757 2800 3.645884 CAAATTTTGCTCCAGACCTGTG 58.354 45.455 0.00 0.00 0.00 3.66
2795 2838 6.040278 TGTTGGAGCACTTGATGATGTAAAAA 59.960 34.615 0.00 0.00 0.00 1.94
2796 2839 5.534278 TGTTGGAGCACTTGATGATGTAAAA 59.466 36.000 0.00 0.00 0.00 1.52
2797 2840 5.069318 TGTTGGAGCACTTGATGATGTAAA 58.931 37.500 0.00 0.00 0.00 2.01
2798 2841 4.650734 TGTTGGAGCACTTGATGATGTAA 58.349 39.130 0.00 0.00 0.00 2.41
2799 2842 4.020307 TCTGTTGGAGCACTTGATGATGTA 60.020 41.667 0.00 0.00 0.00 2.29
2800 2843 3.079578 CTGTTGGAGCACTTGATGATGT 58.920 45.455 0.00 0.00 0.00 3.06
2801 2844 3.340928 TCTGTTGGAGCACTTGATGATG 58.659 45.455 0.00 0.00 0.00 3.07
2802 2845 3.708403 TCTGTTGGAGCACTTGATGAT 57.292 42.857 0.00 0.00 0.00 2.45
2803 2846 3.708403 ATCTGTTGGAGCACTTGATGA 57.292 42.857 0.00 0.00 0.00 2.92
2804 2847 5.732528 GCATTATCTGTTGGAGCACTTGATG 60.733 44.000 0.00 0.00 0.00 3.07
2805 2848 4.337555 GCATTATCTGTTGGAGCACTTGAT 59.662 41.667 0.00 0.00 0.00 2.57
2806 2849 3.691118 GCATTATCTGTTGGAGCACTTGA 59.309 43.478 0.00 0.00 0.00 3.02
2807 2850 3.441222 TGCATTATCTGTTGGAGCACTTG 59.559 43.478 0.00 0.00 0.00 3.16
2808 2851 3.689347 TGCATTATCTGTTGGAGCACTT 58.311 40.909 0.00 0.00 0.00 3.16
2809 2852 3.354948 TGCATTATCTGTTGGAGCACT 57.645 42.857 0.00 0.00 0.00 4.40
2810 2853 4.439305 TTTGCATTATCTGTTGGAGCAC 57.561 40.909 0.00 0.00 0.00 4.40
2811 2854 6.602803 TCTTATTTGCATTATCTGTTGGAGCA 59.397 34.615 0.00 0.00 0.00 4.26
2812 2855 6.914757 GTCTTATTTGCATTATCTGTTGGAGC 59.085 38.462 0.00 0.00 0.00 4.70
2813 2856 7.912250 GTGTCTTATTTGCATTATCTGTTGGAG 59.088 37.037 0.00 0.00 0.00 3.86
2814 2857 7.148086 GGTGTCTTATTTGCATTATCTGTTGGA 60.148 37.037 0.00 0.00 0.00 3.53
2815 2858 6.974622 GGTGTCTTATTTGCATTATCTGTTGG 59.025 38.462 0.00 0.00 0.00 3.77
2816 2859 6.974622 GGGTGTCTTATTTGCATTATCTGTTG 59.025 38.462 0.00 0.00 0.00 3.33
2817 2860 6.183360 CGGGTGTCTTATTTGCATTATCTGTT 60.183 38.462 0.00 0.00 0.00 3.16
2818 2861 5.296780 CGGGTGTCTTATTTGCATTATCTGT 59.703 40.000 0.00 0.00 0.00 3.41
2819 2862 5.751680 CGGGTGTCTTATTTGCATTATCTG 58.248 41.667 0.00 0.00 0.00 2.90
2820 2863 4.275936 GCGGGTGTCTTATTTGCATTATCT 59.724 41.667 0.00 0.00 0.00 1.98
2821 2864 4.036262 TGCGGGTGTCTTATTTGCATTATC 59.964 41.667 0.00 0.00 0.00 1.75
2822 2865 3.951037 TGCGGGTGTCTTATTTGCATTAT 59.049 39.130 0.00 0.00 0.00 1.28
2823 2866 3.348119 TGCGGGTGTCTTATTTGCATTA 58.652 40.909 0.00 0.00 0.00 1.90
2824 2867 2.166829 TGCGGGTGTCTTATTTGCATT 58.833 42.857 0.00 0.00 0.00 3.56
2825 2868 1.832883 TGCGGGTGTCTTATTTGCAT 58.167 45.000 0.00 0.00 0.00 3.96
2826 2869 1.539388 CTTGCGGGTGTCTTATTTGCA 59.461 47.619 0.00 0.00 0.00 4.08
2827 2870 1.810151 TCTTGCGGGTGTCTTATTTGC 59.190 47.619 0.00 0.00 0.00 3.68
2828 2871 2.159707 CGTCTTGCGGGTGTCTTATTTG 60.160 50.000 0.00 0.00 36.85 2.32
2829 2872 2.073816 CGTCTTGCGGGTGTCTTATTT 58.926 47.619 0.00 0.00 36.85 1.40
2830 2873 1.274167 TCGTCTTGCGGGTGTCTTATT 59.726 47.619 0.00 0.00 41.72 1.40
2831 2874 0.892755 TCGTCTTGCGGGTGTCTTAT 59.107 50.000 0.00 0.00 41.72 1.73
2832 2875 0.038892 GTCGTCTTGCGGGTGTCTTA 60.039 55.000 0.00 0.00 41.72 2.10
2833 2876 1.300697 GTCGTCTTGCGGGTGTCTT 60.301 57.895 0.00 0.00 41.72 3.01
2834 2877 2.023414 TTGTCGTCTTGCGGGTGTCT 62.023 55.000 0.00 0.00 41.72 3.41
2835 2878 1.593209 TTGTCGTCTTGCGGGTGTC 60.593 57.895 0.00 0.00 41.72 3.67
2836 2879 1.885850 GTTGTCGTCTTGCGGGTGT 60.886 57.895 0.00 0.00 41.72 4.16
2837 2880 2.604174 GGTTGTCGTCTTGCGGGTG 61.604 63.158 0.00 0.00 41.72 4.61
2838 2881 2.280592 GGTTGTCGTCTTGCGGGT 60.281 61.111 0.00 0.00 41.72 5.28
2839 2882 3.411351 CGGTTGTCGTCTTGCGGG 61.411 66.667 0.00 0.00 41.72 6.13
2848 2891 3.160545 GCAAAATACATCACGGTTGTCG 58.839 45.455 0.00 0.00 45.88 4.35
2849 2892 4.153958 TGCAAAATACATCACGGTTGTC 57.846 40.909 0.00 0.00 0.00 3.18
2850 2893 4.202060 TGTTGCAAAATACATCACGGTTGT 60.202 37.500 0.00 0.00 0.00 3.32
2851 2894 4.148000 GTGTTGCAAAATACATCACGGTTG 59.852 41.667 0.00 0.00 30.56 3.77
2852 2895 4.037446 AGTGTTGCAAAATACATCACGGTT 59.963 37.500 0.00 0.00 40.83 4.44
2853 2896 3.568007 AGTGTTGCAAAATACATCACGGT 59.432 39.130 0.00 0.00 40.83 4.83
2854 2897 4.159377 AGTGTTGCAAAATACATCACGG 57.841 40.909 0.00 0.00 40.83 4.94
2855 2898 7.795431 AATAAGTGTTGCAAAATACATCACG 57.205 32.000 0.00 0.00 40.83 4.35
2878 2921 8.792633 CCTTCAACTCCAACAGATAATGTAAAA 58.207 33.333 0.00 0.00 43.00 1.52
2879 2922 7.942341 ACCTTCAACTCCAACAGATAATGTAAA 59.058 33.333 0.00 0.00 43.00 2.01
2880 2923 7.458397 ACCTTCAACTCCAACAGATAATGTAA 58.542 34.615 0.00 0.00 43.00 2.41
2881 2924 7.016153 ACCTTCAACTCCAACAGATAATGTA 57.984 36.000 0.00 0.00 43.00 2.29
2882 2925 5.880901 ACCTTCAACTCCAACAGATAATGT 58.119 37.500 0.00 0.00 46.97 2.71
2883 2926 6.824305 AACCTTCAACTCCAACAGATAATG 57.176 37.500 0.00 0.00 0.00 1.90
2884 2927 7.839680 AAAACCTTCAACTCCAACAGATAAT 57.160 32.000 0.00 0.00 0.00 1.28
2885 2928 7.654022 AAAAACCTTCAACTCCAACAGATAA 57.346 32.000 0.00 0.00 0.00 1.75
2911 2954 9.439500 CACCAAAGAAATGATTTTTACCATCAT 57.561 29.630 0.00 0.00 42.18 2.45
2912 2955 8.646004 TCACCAAAGAAATGATTTTTACCATCA 58.354 29.630 0.00 0.00 35.12 3.07
2913 2956 9.657419 ATCACCAAAGAAATGATTTTTACCATC 57.343 29.630 0.00 0.00 28.47 3.51
2914 2957 9.439500 CATCACCAAAGAAATGATTTTTACCAT 57.561 29.630 0.00 0.00 30.58 3.55
2915 2958 8.428063 ACATCACCAAAGAAATGATTTTTACCA 58.572 29.630 0.00 0.00 30.58 3.25
2916 2959 8.831715 ACATCACCAAAGAAATGATTTTTACC 57.168 30.769 0.00 0.00 30.58 2.85
2927 2970 9.672086 CGAGTAAAATTTACATCACCAAAGAAA 57.328 29.630 17.00 0.00 0.00 2.52
2928 2971 9.058174 TCGAGTAAAATTTACATCACCAAAGAA 57.942 29.630 17.00 0.00 0.00 2.52
2929 2972 8.610248 TCGAGTAAAATTTACATCACCAAAGA 57.390 30.769 17.00 2.95 0.00 2.52
2930 2973 9.672086 TTTCGAGTAAAATTTACATCACCAAAG 57.328 29.630 17.00 1.12 0.00 2.77
2931 2974 9.453325 GTTTCGAGTAAAATTTACATCACCAAA 57.547 29.630 17.00 5.41 0.00 3.28
2932 2975 8.622157 TGTTTCGAGTAAAATTTACATCACCAA 58.378 29.630 17.00 1.21 0.00 3.67
2933 2976 8.155821 TGTTTCGAGTAAAATTTACATCACCA 57.844 30.769 17.00 4.84 0.00 4.17
2934 2977 9.620660 ATTGTTTCGAGTAAAATTTACATCACC 57.379 29.630 17.00 2.62 0.00 4.02
2939 2982 8.756864 GCCAAATTGTTTCGAGTAAAATTTACA 58.243 29.630 17.00 0.00 0.00 2.41
2940 2983 7.942538 CGCCAAATTGTTTCGAGTAAAATTTAC 59.057 33.333 7.75 7.75 0.00 2.01
2941 2984 7.861372 TCGCCAAATTGTTTCGAGTAAAATTTA 59.139 29.630 9.06 0.00 0.00 1.40
2942 2985 6.697892 TCGCCAAATTGTTTCGAGTAAAATTT 59.302 30.769 5.23 5.23 0.00 1.82
2943 2986 6.210078 TCGCCAAATTGTTTCGAGTAAAATT 58.790 32.000 0.00 0.00 0.00 1.82
2944 2987 5.764131 TCGCCAAATTGTTTCGAGTAAAAT 58.236 33.333 0.00 0.00 0.00 1.82
2945 2988 5.171147 TCGCCAAATTGTTTCGAGTAAAA 57.829 34.783 0.00 0.00 0.00 1.52
2946 2989 4.815040 TCGCCAAATTGTTTCGAGTAAA 57.185 36.364 0.00 0.00 0.00 2.01
2947 2990 6.671614 ATATCGCCAAATTGTTTCGAGTAA 57.328 33.333 7.87 0.00 32.50 2.24
2948 2991 7.956420 ATATATCGCCAAATTGTTTCGAGTA 57.044 32.000 7.87 5.02 32.50 2.59
2949 2992 6.861065 ATATATCGCCAAATTGTTTCGAGT 57.139 33.333 7.87 3.51 32.50 4.18
2950 2993 8.560576 AAAATATATCGCCAAATTGTTTCGAG 57.439 30.769 7.87 0.00 32.50 4.04
2951 2994 9.440784 GTAAAATATATCGCCAAATTGTTTCGA 57.559 29.630 5.12 5.12 0.00 3.71
2952 2995 9.227490 TGTAAAATATATCGCCAAATTGTTTCG 57.773 29.630 0.00 0.00 0.00 3.46
2976 3019 9.630098 GATGTGACAATTTTCAATAGTTGATGT 57.370 29.630 0.00 0.00 39.84 3.06
2977 3020 9.079833 GGATGTGACAATTTTCAATAGTTGATG 57.920 33.333 0.00 0.00 39.84 3.07
2978 3021 8.253113 GGGATGTGACAATTTTCAATAGTTGAT 58.747 33.333 0.00 0.00 39.84 2.57
2979 3022 7.451255 AGGGATGTGACAATTTTCAATAGTTGA 59.549 33.333 0.00 0.00 38.04 3.18
2980 3023 7.605449 AGGGATGTGACAATTTTCAATAGTTG 58.395 34.615 0.00 0.00 0.00 3.16
2981 3024 7.781324 AGGGATGTGACAATTTTCAATAGTT 57.219 32.000 0.00 0.00 0.00 2.24
2982 3025 7.067494 GCTAGGGATGTGACAATTTTCAATAGT 59.933 37.037 0.00 0.00 0.00 2.12
2983 3026 7.284034 AGCTAGGGATGTGACAATTTTCAATAG 59.716 37.037 0.00 0.00 0.00 1.73
2984 3027 7.067372 CAGCTAGGGATGTGACAATTTTCAATA 59.933 37.037 0.00 0.00 0.00 1.90
2985 3028 5.954150 AGCTAGGGATGTGACAATTTTCAAT 59.046 36.000 0.00 0.00 0.00 2.57
2986 3029 5.183713 CAGCTAGGGATGTGACAATTTTCAA 59.816 40.000 0.00 0.00 0.00 2.69
2987 3030 4.701651 CAGCTAGGGATGTGACAATTTTCA 59.298 41.667 0.00 0.00 0.00 2.69
2988 3031 4.439289 GCAGCTAGGGATGTGACAATTTTC 60.439 45.833 0.00 0.00 0.00 2.29
2989 3032 3.445096 GCAGCTAGGGATGTGACAATTTT 59.555 43.478 0.00 0.00 0.00 1.82
2990 3033 3.019564 GCAGCTAGGGATGTGACAATTT 58.980 45.455 0.00 0.00 0.00 1.82
2991 3034 2.240667 AGCAGCTAGGGATGTGACAATT 59.759 45.455 0.00 0.00 0.00 2.32
2992 3035 1.842562 AGCAGCTAGGGATGTGACAAT 59.157 47.619 0.00 0.00 0.00 2.71
2993 3036 1.065926 CAGCAGCTAGGGATGTGACAA 60.066 52.381 0.00 0.00 0.00 3.18
2994 3037 0.538584 CAGCAGCTAGGGATGTGACA 59.461 55.000 0.00 0.00 0.00 3.58
2995 3038 0.179062 CCAGCAGCTAGGGATGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
2996 3039 0.618680 ACCAGCAGCTAGGGATGTGA 60.619 55.000 5.78 0.00 0.00 3.58
2997 3040 1.069823 CTACCAGCAGCTAGGGATGTG 59.930 57.143 5.78 0.00 0.00 3.21
2998 3041 1.343478 ACTACCAGCAGCTAGGGATGT 60.343 52.381 5.78 1.63 0.00 3.06
2999 3042 1.069823 CACTACCAGCAGCTAGGGATG 59.930 57.143 5.78 1.08 0.00 3.51
3000 3043 1.418334 CACTACCAGCAGCTAGGGAT 58.582 55.000 5.78 0.00 0.00 3.85
3001 3044 1.330655 GCACTACCAGCAGCTAGGGA 61.331 60.000 5.78 1.01 0.00 4.20
3002 3045 1.144936 GCACTACCAGCAGCTAGGG 59.855 63.158 13.53 6.55 0.00 3.53
3003 3046 0.103937 GAGCACTACCAGCAGCTAGG 59.896 60.000 0.00 1.57 37.48 3.02
3004 3047 1.110442 AGAGCACTACCAGCAGCTAG 58.890 55.000 0.00 0.00 37.48 3.42
3005 3048 2.302260 CTAGAGCACTACCAGCAGCTA 58.698 52.381 0.00 0.00 37.48 3.32
3006 3049 1.110442 CTAGAGCACTACCAGCAGCT 58.890 55.000 0.00 0.00 40.60 4.24
3007 3050 0.103937 CCTAGAGCACTACCAGCAGC 59.896 60.000 0.00 0.00 0.00 5.25
3008 3051 0.103937 GCCTAGAGCACTACCAGCAG 59.896 60.000 0.00 0.00 42.97 4.24
3009 3052 2.202866 GCCTAGAGCACTACCAGCA 58.797 57.895 0.00 0.00 42.97 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.