Multiple sequence alignment - TraesCS7A01G368200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G368200 chr7A 100.000 5682 0 0 1 5682 541387775 541382094 0.000000e+00 10493.0
1 TraesCS7A01G368200 chr7A 92.072 391 19 5 4988 5378 20046013 20045635 1.800000e-149 540.0
2 TraesCS7A01G368200 chr7A 84.422 199 19 10 4702 4895 677843974 677844165 9.720000e-43 185.0
3 TraesCS7A01G368200 chr7A 93.103 58 4 0 4323 4380 430562705 430562648 1.010000e-12 86.1
4 TraesCS7A01G368200 chr7A 90.476 63 6 0 4317 4379 206913659 206913721 3.650000e-12 84.2
5 TraesCS7A01G368200 chr7B 92.499 3506 172 45 366 3855 480690852 480694282 0.000000e+00 4933.0
6 TraesCS7A01G368200 chr7B 91.501 753 42 13 4242 4987 480694730 480695467 0.000000e+00 1016.0
7 TraesCS7A01G368200 chr7B 80.969 578 51 30 3508 4055 657344038 657344586 2.470000e-108 403.0
8 TraesCS7A01G368200 chr7B 86.890 328 31 6 4241 4560 657344745 657345068 1.950000e-94 357.0
9 TraesCS7A01G368200 chr7B 84.197 386 29 12 3863 4242 480694327 480694686 4.210000e-91 346.0
10 TraesCS7A01G368200 chr7B 85.000 200 17 11 4702 4895 657345155 657345347 2.090000e-44 191.0
11 TraesCS7A01G368200 chr7B 91.964 112 9 0 3489 3600 657424873 657424984 2.120000e-34 158.0
12 TraesCS7A01G368200 chr7B 93.103 58 4 0 4323 4380 376934555 376934498 1.010000e-12 86.1
13 TraesCS7A01G368200 chr7D 92.185 3506 187 41 366 3842 458722734 458726181 0.000000e+00 4876.0
14 TraesCS7A01G368200 chr7D 91.826 734 38 15 4241 4967 458726644 458727362 0.000000e+00 1003.0
15 TraesCS7A01G368200 chr7D 82.005 389 23 16 3863 4241 458726247 458726598 2.590000e-73 287.0
16 TraesCS7A01G368200 chrUn 94.109 696 28 6 4988 5682 313697279 313697962 0.000000e+00 1046.0
17 TraesCS7A01G368200 chrUn 93.966 696 29 6 4988 5682 63344304 63344987 0.000000e+00 1040.0
18 TraesCS7A01G368200 chrUn 88.331 617 65 7 5068 5680 290956822 290956209 0.000000e+00 734.0
19 TraesCS7A01G368200 chrUn 88.331 617 65 7 5068 5680 336406547 336407160 0.000000e+00 734.0
20 TraesCS7A01G368200 chrUn 88.889 171 7 5 4987 5157 63349348 63349506 3.470000e-47 200.0
21 TraesCS7A01G368200 chr4A 94.067 691 27 7 4990 5679 275015650 275016327 0.000000e+00 1037.0
22 TraesCS7A01G368200 chr4A 92.960 696 36 5 4988 5682 386393229 386393912 0.000000e+00 1002.0
23 TraesCS7A01G368200 chr4A 92.947 397 15 6 4987 5382 275020685 275021069 2.970000e-157 566.0
24 TraesCS7A01G368200 chr4A 92.112 393 16 7 4987 5378 386398266 386398644 1.800000e-149 540.0
25 TraesCS7A01G368200 chr6B 89.661 619 57 6 5067 5682 101696623 101696009 0.000000e+00 782.0
26 TraesCS7A01G368200 chr6B 88.456 641 70 4 5045 5682 82782658 82782019 0.000000e+00 771.0
27 TraesCS7A01G368200 chr3B 87.658 632 70 6 5053 5680 758298348 758297721 0.000000e+00 728.0
28 TraesCS7A01G368200 chr5A 91.049 391 23 5 4988 5378 625701113 625701491 8.440000e-143 518.0
29 TraesCS7A01G368200 chr5A 82.210 371 39 14 1 355 138204312 138203953 1.550000e-75 294.0
30 TraesCS7A01G368200 chr5A 100.000 28 0 0 1888 1915 598242644 598242671 1.000000e-02 52.8
31 TraesCS7A01G368200 chr5D 82.175 331 33 10 1 314 124289396 124289075 1.570000e-65 261.0
32 TraesCS7A01G368200 chr2A 78.857 350 46 17 1 333 407101608 407101270 1.600000e-50 211.0
33 TraesCS7A01G368200 chr2A 78.286 350 47 17 1 333 406972850 406972513 1.250000e-46 198.0
34 TraesCS7A01G368200 chr2A 85.915 71 10 0 4294 4364 68880946 68881016 6.100000e-10 76.8
35 TraesCS7A01G368200 chr2B 74.790 238 33 10 34 262 433120300 433120081 1.310000e-11 82.4
36 TraesCS7A01G368200 chr2B 80.769 104 16 4 4294 4395 3292143 3292244 1.700000e-10 78.7
37 TraesCS7A01G368200 chr2B 85.915 71 10 0 4294 4364 105540227 105540297 6.100000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G368200 chr7A 541382094 541387775 5681 True 10493.000000 10493 100.000000 1 5682 1 chr7A.!!$R3 5681
1 TraesCS7A01G368200 chr7B 480690852 480695467 4615 False 2098.333333 4933 89.399000 366 4987 3 chr7B.!!$F2 4621
2 TraesCS7A01G368200 chr7B 657344038 657345347 1309 False 317.000000 403 84.286333 3508 4895 3 chr7B.!!$F3 1387
3 TraesCS7A01G368200 chr7D 458722734 458727362 4628 False 2055.333333 4876 88.672000 366 4967 3 chr7D.!!$F1 4601
4 TraesCS7A01G368200 chrUn 313697279 313697962 683 False 1046.000000 1046 94.109000 4988 5682 1 chrUn.!!$F3 694
5 TraesCS7A01G368200 chrUn 63344304 63344987 683 False 1040.000000 1040 93.966000 4988 5682 1 chrUn.!!$F1 694
6 TraesCS7A01G368200 chrUn 290956209 290956822 613 True 734.000000 734 88.331000 5068 5680 1 chrUn.!!$R1 612
7 TraesCS7A01G368200 chrUn 336406547 336407160 613 False 734.000000 734 88.331000 5068 5680 1 chrUn.!!$F4 612
8 TraesCS7A01G368200 chr4A 275015650 275016327 677 False 1037.000000 1037 94.067000 4990 5679 1 chr4A.!!$F1 689
9 TraesCS7A01G368200 chr4A 386393229 386393912 683 False 1002.000000 1002 92.960000 4988 5682 1 chr4A.!!$F3 694
10 TraesCS7A01G368200 chr6B 101696009 101696623 614 True 782.000000 782 89.661000 5067 5682 1 chr6B.!!$R2 615
11 TraesCS7A01G368200 chr6B 82782019 82782658 639 True 771.000000 771 88.456000 5045 5682 1 chr6B.!!$R1 637
12 TraesCS7A01G368200 chr3B 758297721 758298348 627 True 728.000000 728 87.658000 5053 5680 1 chr3B.!!$R1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.107654 ATTCACCCGAAGCTGCTACC 60.108 55.0 0.9 0.0 33.74 3.18 F
205 206 0.107703 CCCGAAGCTGCTACCATTCA 60.108 55.0 0.9 0.0 0.00 2.57 F
1246 1292 0.247736 CACCTTCCTCAACCTCTCCG 59.752 60.0 0.0 0.0 0.00 4.63 F
3054 3100 0.247736 CCAGCCTGTGTGAGTCCTAC 59.752 60.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2059 1.301716 CTGGTTGTCCGACAGGTGG 60.302 63.158 0.64 0.0 39.05 4.61 R
2155 2201 1.318158 GCATTGCCCCAGAGGAACAG 61.318 60.000 0.00 0.0 38.24 3.16 R
3162 3208 0.984230 TGAACAGGATCCAGACCACC 59.016 55.000 15.82 0.0 0.00 4.61 R
4986 5167 0.036105 TGTCTTGGCGATGCTGACAT 60.036 50.000 0.00 0.0 39.98 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.793492 GATCTGGCATTAGGTGAAATCTAC 57.207 41.667 0.00 0.00 0.00 2.59
24 25 4.693283 TCTGGCATTAGGTGAAATCTACG 58.307 43.478 0.00 0.00 0.00 3.51
25 26 4.404394 TCTGGCATTAGGTGAAATCTACGA 59.596 41.667 0.00 0.00 0.00 3.43
26 27 4.693283 TGGCATTAGGTGAAATCTACGAG 58.307 43.478 0.00 0.00 0.00 4.18
27 28 4.404394 TGGCATTAGGTGAAATCTACGAGA 59.596 41.667 0.00 0.00 0.00 4.04
28 29 5.070446 TGGCATTAGGTGAAATCTACGAGAT 59.930 40.000 0.00 0.00 36.28 2.75
29 30 5.635700 GGCATTAGGTGAAATCTACGAGATC 59.364 44.000 0.00 0.00 32.89 2.75
30 31 6.216569 GCATTAGGTGAAATCTACGAGATCA 58.783 40.000 0.00 0.00 32.89 2.92
31 32 6.701841 GCATTAGGTGAAATCTACGAGATCAA 59.298 38.462 0.00 0.00 32.89 2.57
32 33 7.386299 GCATTAGGTGAAATCTACGAGATCAAT 59.614 37.037 0.00 0.00 32.89 2.57
33 34 9.914131 CATTAGGTGAAATCTACGAGATCAATA 57.086 33.333 0.00 0.00 32.89 1.90
37 38 9.838339 AGGTGAAATCTACGAGATCAATATTTT 57.162 29.630 0.00 0.00 32.89 1.82
48 49 9.757227 ACGAGATCAATATTTTTGGAAAACAAA 57.243 25.926 0.00 0.00 46.82 2.83
62 63 8.777865 TTGGAAAACAAATACATGTTCAAACA 57.222 26.923 2.30 0.00 42.49 2.83
63 64 9.388506 TTGGAAAACAAATACATGTTCAAACAT 57.611 25.926 2.30 2.53 42.49 2.71
64 65 9.388506 TGGAAAACAAATACATGTTCAAACATT 57.611 25.926 2.30 0.00 46.95 2.71
65 66 9.862585 GGAAAACAAATACATGTTCAAACATTC 57.137 29.630 2.30 2.56 46.95 2.67
68 69 9.814899 AAACAAATACATGTTCAAACATTCTCA 57.185 25.926 2.30 0.00 46.95 3.27
69 70 9.814899 AACAAATACATGTTCAAACATTCTCAA 57.185 25.926 2.30 0.00 46.95 3.02
70 71 9.814899 ACAAATACATGTTCAAACATTCTCAAA 57.185 25.926 2.30 0.00 46.95 2.69
75 76 8.776376 ACATGTTCAAACATTCTCAAAACTTT 57.224 26.923 5.64 0.00 46.95 2.66
76 77 9.218440 ACATGTTCAAACATTCTCAAAACTTTT 57.782 25.926 5.64 0.00 46.95 2.27
77 78 9.480538 CATGTTCAAACATTCTCAAAACTTTTG 57.519 29.630 5.64 7.80 46.95 2.44
78 79 8.600449 TGTTCAAACATTCTCAAAACTTTTGT 57.400 26.923 12.88 0.00 33.17 2.83
79 80 9.698309 TGTTCAAACATTCTCAAAACTTTTGTA 57.302 25.926 12.88 2.11 33.17 2.41
82 83 9.567848 TCAAACATTCTCAAAACTTTTGTAGAC 57.432 29.630 12.88 0.00 0.00 2.59
83 84 9.352784 CAAACATTCTCAAAACTTTTGTAGACA 57.647 29.630 12.88 7.23 0.00 3.41
84 85 8.911247 AACATTCTCAAAACTTTTGTAGACAC 57.089 30.769 12.88 0.00 0.00 3.67
85 86 8.050778 ACATTCTCAAAACTTTTGTAGACACA 57.949 30.769 12.88 3.09 0.00 3.72
86 87 7.968405 ACATTCTCAAAACTTTTGTAGACACAC 59.032 33.333 12.88 0.00 33.30 3.82
87 88 7.441890 TTCTCAAAACTTTTGTAGACACACA 57.558 32.000 12.88 0.12 33.30 3.72
88 89 7.624360 TCTCAAAACTTTTGTAGACACACAT 57.376 32.000 12.88 0.00 33.30 3.21
89 90 7.693952 TCTCAAAACTTTTGTAGACACACATC 58.306 34.615 12.88 0.00 33.30 3.06
90 91 7.335673 TCTCAAAACTTTTGTAGACACACATCA 59.664 33.333 12.88 0.00 33.30 3.07
91 92 7.821652 TCAAAACTTTTGTAGACACACATCAA 58.178 30.769 12.88 0.00 33.30 2.57
92 93 8.465999 TCAAAACTTTTGTAGACACACATCAAT 58.534 29.630 12.88 0.00 33.30 2.57
93 94 8.533965 CAAAACTTTTGTAGACACACATCAATG 58.466 33.333 6.14 0.00 33.30 2.82
94 95 6.942532 ACTTTTGTAGACACACATCAATGT 57.057 33.333 0.00 0.00 42.84 2.71
95 96 7.333528 ACTTTTGTAGACACACATCAATGTT 57.666 32.000 0.00 0.00 39.39 2.71
96 97 7.417612 ACTTTTGTAGACACACATCAATGTTC 58.582 34.615 0.00 0.00 39.39 3.18
97 98 5.590104 TTGTAGACACACATCAATGTTCG 57.410 39.130 0.00 0.00 39.39 3.95
98 99 4.877282 TGTAGACACACATCAATGTTCGA 58.123 39.130 0.00 0.00 39.39 3.71
99 100 5.478407 TGTAGACACACATCAATGTTCGAT 58.522 37.500 0.00 0.00 39.39 3.59
100 101 6.626302 TGTAGACACACATCAATGTTCGATA 58.374 36.000 0.00 0.00 39.39 2.92
101 102 7.264947 TGTAGACACACATCAATGTTCGATAT 58.735 34.615 0.00 0.00 39.39 1.63
102 103 6.594284 AGACACACATCAATGTTCGATATG 57.406 37.500 0.00 0.00 39.39 1.78
103 104 5.007039 AGACACACATCAATGTTCGATATGC 59.993 40.000 0.00 0.00 39.39 3.14
104 105 4.635324 ACACACATCAATGTTCGATATGCA 59.365 37.500 0.00 0.00 39.39 3.96
105 106 5.123661 ACACACATCAATGTTCGATATGCAA 59.876 36.000 0.00 0.00 39.39 4.08
106 107 5.453266 CACACATCAATGTTCGATATGCAAC 59.547 40.000 0.00 0.00 39.39 4.17
107 108 4.971830 CACATCAATGTTCGATATGCAACC 59.028 41.667 0.00 0.00 39.39 3.77
108 109 4.883585 ACATCAATGTTCGATATGCAACCT 59.116 37.500 0.00 0.00 37.90 3.50
109 110 5.008019 ACATCAATGTTCGATATGCAACCTC 59.992 40.000 0.00 0.00 37.90 3.85
110 111 4.512484 TCAATGTTCGATATGCAACCTCA 58.488 39.130 0.00 0.00 0.00 3.86
111 112 4.940654 TCAATGTTCGATATGCAACCTCAA 59.059 37.500 0.00 0.00 0.00 3.02
112 113 5.414144 TCAATGTTCGATATGCAACCTCAAA 59.586 36.000 0.00 0.00 0.00 2.69
113 114 5.895636 ATGTTCGATATGCAACCTCAAAA 57.104 34.783 0.00 0.00 0.00 2.44
114 115 5.697473 TGTTCGATATGCAACCTCAAAAA 57.303 34.783 0.00 0.00 0.00 1.94
115 116 5.698832 TGTTCGATATGCAACCTCAAAAAG 58.301 37.500 0.00 0.00 0.00 2.27
116 117 5.240623 TGTTCGATATGCAACCTCAAAAAGT 59.759 36.000 0.00 0.00 0.00 2.66
117 118 5.957842 TCGATATGCAACCTCAAAAAGTT 57.042 34.783 0.00 0.00 0.00 2.66
118 119 5.938322 TCGATATGCAACCTCAAAAAGTTC 58.062 37.500 0.00 0.00 0.00 3.01
119 120 5.705441 TCGATATGCAACCTCAAAAAGTTCT 59.295 36.000 0.00 0.00 0.00 3.01
120 121 6.206634 TCGATATGCAACCTCAAAAAGTTCTT 59.793 34.615 0.00 0.00 0.00 2.52
121 122 6.863126 CGATATGCAACCTCAAAAAGTTCTTT 59.137 34.615 0.00 0.00 0.00 2.52
122 123 7.061094 CGATATGCAACCTCAAAAAGTTCTTTC 59.939 37.037 0.00 0.00 0.00 2.62
123 124 5.398603 TGCAACCTCAAAAAGTTCTTTCA 57.601 34.783 0.00 0.00 0.00 2.69
124 125 5.788450 TGCAACCTCAAAAAGTTCTTTCAA 58.212 33.333 0.00 0.00 0.00 2.69
125 126 5.637387 TGCAACCTCAAAAAGTTCTTTCAAC 59.363 36.000 0.00 0.00 0.00 3.18
126 127 5.869344 GCAACCTCAAAAAGTTCTTTCAACT 59.131 36.000 0.00 0.00 0.00 3.16
127 128 6.368791 GCAACCTCAAAAAGTTCTTTCAACTT 59.631 34.615 0.00 0.00 41.82 2.66
128 129 7.544217 GCAACCTCAAAAAGTTCTTTCAACTTA 59.456 33.333 0.28 0.00 39.36 2.24
129 130 8.860128 CAACCTCAAAAAGTTCTTTCAACTTAC 58.140 33.333 0.28 0.00 39.36 2.34
130 131 8.117813 ACCTCAAAAAGTTCTTTCAACTTACA 57.882 30.769 0.28 0.00 39.36 2.41
131 132 8.749354 ACCTCAAAAAGTTCTTTCAACTTACAT 58.251 29.630 0.28 0.00 39.36 2.29
132 133 9.586435 CCTCAAAAAGTTCTTTCAACTTACATT 57.414 29.630 0.28 0.00 39.36 2.71
162 163 9.965824 AGAAACAAAAACGATAAAATCAGATGT 57.034 25.926 0.00 0.00 0.00 3.06
163 164 9.993881 GAAACAAAAACGATAAAATCAGATGTG 57.006 29.630 0.00 0.00 0.00 3.21
164 165 9.743057 AAACAAAAACGATAAAATCAGATGTGA 57.257 25.926 0.00 0.00 37.02 3.58
165 166 9.743057 AACAAAAACGATAAAATCAGATGTGAA 57.257 25.926 0.00 0.00 35.88 3.18
166 167 9.912634 ACAAAAACGATAAAATCAGATGTGAAT 57.087 25.926 0.00 0.00 35.88 2.57
171 172 8.948631 ACGATAAAATCAGATGTGAATAGTGT 57.051 30.769 0.00 0.00 35.88 3.55
172 173 9.035607 ACGATAAAATCAGATGTGAATAGTGTC 57.964 33.333 0.00 0.00 35.88 3.67
173 174 9.034544 CGATAAAATCAGATGTGAATAGTGTCA 57.965 33.333 0.00 0.00 35.88 3.58
177 178 8.571461 AAATCAGATGTGAATAGTGTCAATGT 57.429 30.769 0.00 0.00 35.88 2.71
178 179 9.671279 AAATCAGATGTGAATAGTGTCAATGTA 57.329 29.630 0.00 0.00 35.88 2.29
179 180 8.654230 ATCAGATGTGAATAGTGTCAATGTAC 57.346 34.615 0.00 0.00 35.88 2.90
180 181 7.840931 TCAGATGTGAATAGTGTCAATGTACT 58.159 34.615 0.00 0.00 0.00 2.73
181 182 8.966868 TCAGATGTGAATAGTGTCAATGTACTA 58.033 33.333 0.00 3.53 34.23 1.82
182 183 9.755804 CAGATGTGAATAGTGTCAATGTACTAT 57.244 33.333 0.00 6.96 40.77 2.12
189 190 4.755411 AGTGTCAATGTACTATTCACCCG 58.245 43.478 0.00 0.00 0.00 5.28
190 191 4.464951 AGTGTCAATGTACTATTCACCCGA 59.535 41.667 0.00 0.00 0.00 5.14
191 192 5.046878 AGTGTCAATGTACTATTCACCCGAA 60.047 40.000 0.00 0.00 35.05 4.30
192 193 5.291128 GTGTCAATGTACTATTCACCCGAAG 59.709 44.000 0.00 0.00 33.74 3.79
193 194 4.270325 GTCAATGTACTATTCACCCGAAGC 59.730 45.833 0.00 0.00 33.74 3.86
194 195 4.161565 TCAATGTACTATTCACCCGAAGCT 59.838 41.667 0.00 0.00 33.74 3.74
195 196 3.520290 TGTACTATTCACCCGAAGCTG 57.480 47.619 0.00 0.00 33.74 4.24
196 197 2.202566 GTACTATTCACCCGAAGCTGC 58.797 52.381 0.00 0.00 33.74 5.25
197 198 0.905357 ACTATTCACCCGAAGCTGCT 59.095 50.000 0.00 0.00 33.74 4.24
198 199 2.108168 ACTATTCACCCGAAGCTGCTA 58.892 47.619 0.90 0.00 33.74 3.49
199 200 2.159085 ACTATTCACCCGAAGCTGCTAC 60.159 50.000 0.90 0.00 33.74 3.58
200 201 0.107654 ATTCACCCGAAGCTGCTACC 60.108 55.000 0.90 0.00 33.74 3.18
201 202 1.476845 TTCACCCGAAGCTGCTACCA 61.477 55.000 0.90 0.00 0.00 3.25
202 203 1.221840 CACCCGAAGCTGCTACCAT 59.778 57.895 0.90 0.00 0.00 3.55
203 204 0.392998 CACCCGAAGCTGCTACCATT 60.393 55.000 0.90 0.00 0.00 3.16
204 205 0.107654 ACCCGAAGCTGCTACCATTC 60.108 55.000 0.90 0.00 0.00 2.67
205 206 0.107703 CCCGAAGCTGCTACCATTCA 60.108 55.000 0.90 0.00 0.00 2.57
206 207 1.009829 CCGAAGCTGCTACCATTCAC 58.990 55.000 0.90 0.00 0.00 3.18
207 208 1.675714 CCGAAGCTGCTACCATTCACA 60.676 52.381 0.90 0.00 0.00 3.58
208 209 2.283298 CGAAGCTGCTACCATTCACAT 58.717 47.619 0.90 0.00 0.00 3.21
209 210 2.679837 CGAAGCTGCTACCATTCACATT 59.320 45.455 0.90 0.00 0.00 2.71
210 211 3.242543 CGAAGCTGCTACCATTCACATTC 60.243 47.826 0.90 0.00 0.00 2.67
211 212 2.283298 AGCTGCTACCATTCACATTCG 58.717 47.619 0.00 0.00 0.00 3.34
212 213 2.093500 AGCTGCTACCATTCACATTCGA 60.093 45.455 0.00 0.00 0.00 3.71
213 214 2.677836 GCTGCTACCATTCACATTCGAA 59.322 45.455 0.00 0.00 0.00 3.71
214 215 3.313526 GCTGCTACCATTCACATTCGAAT 59.686 43.478 4.39 4.39 36.00 3.34
217 218 4.332543 TGCTACCATTCACATTCGAATGTC 59.667 41.667 34.94 22.33 46.10 3.06
218 219 4.572389 GCTACCATTCACATTCGAATGTCT 59.428 41.667 34.94 21.79 46.10 3.41
219 220 5.065218 GCTACCATTCACATTCGAATGTCTT 59.935 40.000 34.94 21.61 46.10 3.01
220 221 5.964958 ACCATTCACATTCGAATGTCTTT 57.035 34.783 34.94 21.30 46.10 2.52
221 222 6.331369 ACCATTCACATTCGAATGTCTTTT 57.669 33.333 34.94 19.76 46.10 2.27
222 223 6.748132 ACCATTCACATTCGAATGTCTTTTT 58.252 32.000 34.94 18.07 46.10 1.94
244 245 6.983474 TTTGAATCTCTAAATGTGCATCGA 57.017 33.333 0.00 0.00 0.00 3.59
245 246 6.594284 TTGAATCTCTAAATGTGCATCGAG 57.406 37.500 0.00 0.00 0.00 4.04
246 247 5.664457 TGAATCTCTAAATGTGCATCGAGT 58.336 37.500 0.00 0.00 0.00 4.18
247 248 6.108687 TGAATCTCTAAATGTGCATCGAGTT 58.891 36.000 0.00 0.00 0.00 3.01
248 249 6.595326 TGAATCTCTAAATGTGCATCGAGTTT 59.405 34.615 0.00 0.00 0.00 2.66
249 250 6.992063 ATCTCTAAATGTGCATCGAGTTTT 57.008 33.333 0.00 0.00 0.00 2.43
250 251 6.169419 TCTCTAAATGTGCATCGAGTTTTG 57.831 37.500 0.00 0.00 0.00 2.44
251 252 5.931724 TCTCTAAATGTGCATCGAGTTTTGA 59.068 36.000 0.00 0.00 0.00 2.69
252 253 6.091305 TCTCTAAATGTGCATCGAGTTTTGAG 59.909 38.462 0.00 3.93 34.91 3.02
253 254 4.836125 AAATGTGCATCGAGTTTTGAGT 57.164 36.364 0.00 0.00 0.00 3.41
254 255 4.836125 AATGTGCATCGAGTTTTGAGTT 57.164 36.364 0.00 0.00 0.00 3.01
255 256 3.607422 TGTGCATCGAGTTTTGAGTTG 57.393 42.857 0.00 0.00 0.00 3.16
256 257 3.202097 TGTGCATCGAGTTTTGAGTTGA 58.798 40.909 0.00 0.00 0.00 3.18
257 258 3.814842 TGTGCATCGAGTTTTGAGTTGAT 59.185 39.130 0.00 0.00 0.00 2.57
258 259 4.153986 GTGCATCGAGTTTTGAGTTGATG 58.846 43.478 0.00 6.98 37.01 3.07
259 260 3.814842 TGCATCGAGTTTTGAGTTGATGT 59.185 39.130 11.26 0.00 36.48 3.06
260 261 4.275689 TGCATCGAGTTTTGAGTTGATGTT 59.724 37.500 11.26 0.00 36.48 2.71
261 262 5.215160 GCATCGAGTTTTGAGTTGATGTTT 58.785 37.500 11.26 0.00 36.48 2.83
262 263 5.116074 GCATCGAGTTTTGAGTTGATGTTTG 59.884 40.000 11.26 0.00 36.48 2.93
263 264 5.168526 TCGAGTTTTGAGTTGATGTTTGG 57.831 39.130 0.00 0.00 0.00 3.28
264 265 4.036262 TCGAGTTTTGAGTTGATGTTTGGG 59.964 41.667 0.00 0.00 0.00 4.12
265 266 4.620982 GAGTTTTGAGTTGATGTTTGGGG 58.379 43.478 0.00 0.00 0.00 4.96
266 267 4.030216 AGTTTTGAGTTGATGTTTGGGGT 58.970 39.130 0.00 0.00 0.00 4.95
267 268 4.469586 AGTTTTGAGTTGATGTTTGGGGTT 59.530 37.500 0.00 0.00 0.00 4.11
268 269 4.399004 TTTGAGTTGATGTTTGGGGTTG 57.601 40.909 0.00 0.00 0.00 3.77
269 270 3.025322 TGAGTTGATGTTTGGGGTTGT 57.975 42.857 0.00 0.00 0.00 3.32
270 271 4.171878 TGAGTTGATGTTTGGGGTTGTA 57.828 40.909 0.00 0.00 0.00 2.41
271 272 4.735369 TGAGTTGATGTTTGGGGTTGTAT 58.265 39.130 0.00 0.00 0.00 2.29
272 273 5.882040 TGAGTTGATGTTTGGGGTTGTATA 58.118 37.500 0.00 0.00 0.00 1.47
273 274 6.489603 TGAGTTGATGTTTGGGGTTGTATAT 58.510 36.000 0.00 0.00 0.00 0.86
274 275 7.634718 TGAGTTGATGTTTGGGGTTGTATATA 58.365 34.615 0.00 0.00 0.00 0.86
275 276 8.278639 TGAGTTGATGTTTGGGGTTGTATATAT 58.721 33.333 0.00 0.00 0.00 0.86
276 277 8.463930 AGTTGATGTTTGGGGTTGTATATATG 57.536 34.615 0.00 0.00 0.00 1.78
277 278 6.892658 TGATGTTTGGGGTTGTATATATGC 57.107 37.500 0.00 0.00 0.00 3.14
278 279 5.772672 TGATGTTTGGGGTTGTATATATGCC 59.227 40.000 0.00 0.00 0.00 4.40
279 280 4.475345 TGTTTGGGGTTGTATATATGCCC 58.525 43.478 9.49 9.49 38.61 5.36
280 281 3.426787 TTGGGGTTGTATATATGCCCG 57.573 47.619 10.95 0.00 40.18 6.13
281 282 2.622210 TGGGGTTGTATATATGCCCGA 58.378 47.619 10.95 6.53 40.18 5.14
282 283 2.303600 TGGGGTTGTATATATGCCCGAC 59.696 50.000 10.95 0.00 40.18 4.79
283 284 2.303600 GGGGTTGTATATATGCCCGACA 59.696 50.000 10.95 0.00 40.18 4.35
284 285 3.054655 GGGGTTGTATATATGCCCGACAT 60.055 47.826 10.95 0.00 43.18 3.06
285 286 3.938963 GGGTTGTATATATGCCCGACATG 59.061 47.826 0.00 0.00 40.06 3.21
286 287 4.323180 GGGTTGTATATATGCCCGACATGA 60.323 45.833 0.00 0.00 40.06 3.07
287 288 5.242434 GGTTGTATATATGCCCGACATGAA 58.758 41.667 0.00 0.00 40.06 2.57
288 289 5.880332 GGTTGTATATATGCCCGACATGAAT 59.120 40.000 0.00 0.00 40.06 2.57
289 290 6.183360 GGTTGTATATATGCCCGACATGAATG 60.183 42.308 0.00 0.00 40.06 2.67
290 291 6.048732 TGTATATATGCCCGACATGAATGT 57.951 37.500 0.00 0.00 45.16 2.71
291 292 6.472016 TGTATATATGCCCGACATGAATGTT 58.528 36.000 0.00 0.00 41.95 2.71
292 293 5.885230 ATATATGCCCGACATGAATGTTG 57.115 39.130 0.00 3.98 41.95 3.33
293 294 1.838112 ATGCCCGACATGAATGTTGT 58.162 45.000 0.00 0.00 41.95 3.32
294 295 1.164411 TGCCCGACATGAATGTTGTC 58.836 50.000 0.00 0.00 41.95 3.18
295 296 1.164411 GCCCGACATGAATGTTGTCA 58.836 50.000 0.00 0.00 42.90 3.58
296 297 1.539388 GCCCGACATGAATGTTGTCAA 59.461 47.619 0.00 0.00 42.90 3.18
297 298 2.030363 GCCCGACATGAATGTTGTCAAA 60.030 45.455 0.00 0.00 42.90 2.69
298 299 3.367292 GCCCGACATGAATGTTGTCAAAT 60.367 43.478 0.00 0.00 42.90 2.32
299 300 4.142491 GCCCGACATGAATGTTGTCAAATA 60.142 41.667 0.00 0.00 42.90 1.40
300 301 5.450412 GCCCGACATGAATGTTGTCAAATAT 60.450 40.000 0.00 0.00 42.90 1.28
301 302 6.563422 CCCGACATGAATGTTGTCAAATATT 58.437 36.000 0.00 0.00 42.90 1.28
302 303 7.035004 CCCGACATGAATGTTGTCAAATATTT 58.965 34.615 0.00 0.00 42.90 1.40
303 304 7.545265 CCCGACATGAATGTTGTCAAATATTTT 59.455 33.333 0.00 0.00 42.90 1.82
304 305 8.586273 CCGACATGAATGTTGTCAAATATTTTC 58.414 33.333 0.00 0.00 42.90 2.29
305 306 9.127006 CGACATGAATGTTGTCAAATATTTTCA 57.873 29.630 0.00 0.00 42.90 2.69
354 355 8.955061 ATGATTAACTTTTTGTTGATCTCACG 57.045 30.769 12.25 0.00 45.94 4.35
355 356 7.925993 TGATTAACTTTTTGTTGATCTCACGT 58.074 30.769 12.25 0.00 45.94 4.49
356 357 9.047371 TGATTAACTTTTTGTTGATCTCACGTA 57.953 29.630 12.25 0.00 45.94 3.57
357 358 9.872757 GATTAACTTTTTGTTGATCTCACGTAA 57.127 29.630 0.00 0.00 43.84 3.18
362 363 9.659830 ACTTTTTGTTGATCTCACGTAAATTAC 57.340 29.630 0.00 0.00 0.00 1.89
363 364 9.113876 CTTTTTGTTGATCTCACGTAAATTACC 57.886 33.333 0.00 0.00 0.00 2.85
364 365 7.731882 TTTGTTGATCTCACGTAAATTACCA 57.268 32.000 0.00 0.00 0.00 3.25
380 381 0.322008 ACCAGCTAGAGGCAAGCAAC 60.322 55.000 8.84 0.00 42.62 4.17
384 385 1.639298 GCTAGAGGCAAGCAACACGG 61.639 60.000 0.00 0.00 39.83 4.94
428 429 1.839598 GCACTCAGCAGCAGTGACAC 61.840 60.000 15.44 0.00 43.54 3.67
446 451 4.098044 TGACACTACATTACCAGCTAGCTC 59.902 45.833 16.15 0.00 0.00 4.09
535 549 1.804748 CAGGACAAGCGAGGTTTTACC 59.195 52.381 0.00 0.00 38.99 2.85
536 550 1.418637 AGGACAAGCGAGGTTTTACCA 59.581 47.619 0.00 0.00 41.95 3.25
537 551 1.534163 GGACAAGCGAGGTTTTACCAC 59.466 52.381 0.00 0.00 41.95 4.16
538 552 1.534163 GACAAGCGAGGTTTTACCACC 59.466 52.381 0.00 0.00 41.95 4.61
582 597 6.775594 GGTTTAAGCTAACCCAAATCTCAT 57.224 37.500 7.11 0.00 41.42 2.90
585 600 8.745590 GGTTTAAGCTAACCCAAATCTCATAAA 58.254 33.333 7.11 0.00 41.42 1.40
591 606 9.700831 AGCTAACCCAAATCTCATAAAAATAGT 57.299 29.630 0.00 0.00 0.00 2.12
606 621 9.674824 CATAAAAATAGTACTACTCTACACCCG 57.325 37.037 4.31 0.00 0.00 5.28
607 622 5.764487 AAATAGTACTACTCTACACCCGC 57.236 43.478 4.31 0.00 0.00 6.13
608 623 2.795231 AGTACTACTCTACACCCGCA 57.205 50.000 0.00 0.00 0.00 5.69
634 649 1.484653 CCGAGGACAGAGAGAGAGAGA 59.515 57.143 0.00 0.00 0.00 3.10
636 651 2.430694 CGAGGACAGAGAGAGAGAGAGA 59.569 54.545 0.00 0.00 0.00 3.10
638 653 3.706594 GAGGACAGAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
663 686 2.173382 CGCGTTCAAAAGAGCCGG 59.827 61.111 0.00 0.00 0.00 6.13
664 687 2.561373 GCGTTCAAAAGAGCCGGG 59.439 61.111 2.18 0.00 0.00 5.73
667 690 1.298859 CGTTCAAAAGAGCCGGGGAG 61.299 60.000 2.18 0.00 0.00 4.30
668 691 0.960861 GTTCAAAAGAGCCGGGGAGG 60.961 60.000 2.18 0.00 44.97 4.30
750 775 3.741476 GGGTGCGGCTCAAGCAAG 61.741 66.667 0.00 0.00 46.97 4.01
771 796 2.734673 CCAGCTCGACGCAAAGCTC 61.735 63.158 6.57 0.00 45.57 4.09
772 797 2.433318 AGCTCGACGCAAAGCTCC 60.433 61.111 3.86 0.00 45.57 4.70
774 799 2.815647 CTCGACGCAAAGCTCCCC 60.816 66.667 0.00 0.00 0.00 4.81
818 864 2.273449 CTCCACTCCCACATGCCC 59.727 66.667 0.00 0.00 0.00 5.36
849 895 3.090532 CCCCCTCCCACTAGCCAC 61.091 72.222 0.00 0.00 0.00 5.01
850 896 3.090532 CCCCTCCCACTAGCCACC 61.091 72.222 0.00 0.00 0.00 4.61
851 897 3.470888 CCCTCCCACTAGCCACCG 61.471 72.222 0.00 0.00 0.00 4.94
852 898 2.363795 CCTCCCACTAGCCACCGA 60.364 66.667 0.00 0.00 0.00 4.69
853 899 2.427245 CCTCCCACTAGCCACCGAG 61.427 68.421 0.00 0.00 0.00 4.63
854 900 1.379977 CTCCCACTAGCCACCGAGA 60.380 63.158 0.00 0.00 0.00 4.04
855 901 1.379977 TCCCACTAGCCACCGAGAG 60.380 63.158 0.00 0.00 0.00 3.20
926 972 1.735920 CGCTGCTGATCGGATAGGC 60.736 63.158 5.48 2.33 0.00 3.93
945 991 4.601928 GGGGGAAGGAAGGAAGGA 57.398 61.111 0.00 0.00 0.00 3.36
946 992 2.800970 GGGGGAAGGAAGGAAGGAA 58.199 57.895 0.00 0.00 0.00 3.36
947 993 1.081481 GGGGGAAGGAAGGAAGGAAA 58.919 55.000 0.00 0.00 0.00 3.13
948 994 1.006043 GGGGGAAGGAAGGAAGGAAAG 59.994 57.143 0.00 0.00 0.00 2.62
949 995 1.993301 GGGGAAGGAAGGAAGGAAAGA 59.007 52.381 0.00 0.00 0.00 2.52
950 996 2.378886 GGGGAAGGAAGGAAGGAAAGAA 59.621 50.000 0.00 0.00 0.00 2.52
951 997 3.562393 GGGGAAGGAAGGAAGGAAAGAAG 60.562 52.174 0.00 0.00 0.00 2.85
952 998 3.085533 GGAAGGAAGGAAGGAAAGAAGC 58.914 50.000 0.00 0.00 0.00 3.86
953 999 2.481289 AGGAAGGAAGGAAAGAAGCG 57.519 50.000 0.00 0.00 0.00 4.68
954 1000 0.805614 GGAAGGAAGGAAAGAAGCGC 59.194 55.000 0.00 0.00 0.00 5.92
955 1001 1.611936 GGAAGGAAGGAAAGAAGCGCT 60.612 52.381 2.64 2.64 0.00 5.92
956 1002 1.735018 GAAGGAAGGAAAGAAGCGCTC 59.265 52.381 12.06 4.30 0.00 5.03
957 1003 0.390472 AGGAAGGAAAGAAGCGCTCG 60.390 55.000 12.06 0.00 0.00 5.03
958 1004 0.670854 GGAAGGAAAGAAGCGCTCGT 60.671 55.000 12.06 0.00 0.00 4.18
959 1005 1.149148 GAAGGAAAGAAGCGCTCGTT 58.851 50.000 12.06 9.09 0.00 3.85
960 1006 1.531578 GAAGGAAAGAAGCGCTCGTTT 59.468 47.619 12.06 13.85 0.00 3.60
961 1007 1.149148 AGGAAAGAAGCGCTCGTTTC 58.851 50.000 25.55 25.55 35.92 2.78
962 1008 0.865769 GGAAAGAAGCGCTCGTTTCA 59.134 50.000 30.43 0.00 37.72 2.69
963 1009 1.136224 GGAAAGAAGCGCTCGTTTCAG 60.136 52.381 30.43 0.00 37.72 3.02
964 1010 1.792949 GAAAGAAGCGCTCGTTTCAGA 59.207 47.619 27.29 0.00 37.72 3.27
993 1039 1.078708 GGGTTTCTTGATCGCCGGA 60.079 57.895 5.05 0.00 0.00 5.14
994 1040 1.090052 GGGTTTCTTGATCGCCGGAG 61.090 60.000 5.05 0.00 0.00 4.63
995 1041 1.706287 GGTTTCTTGATCGCCGGAGC 61.706 60.000 5.05 0.00 0.00 4.70
1053 1099 2.875786 GCTATTGCTGACCGCGCTC 61.876 63.158 5.56 0.00 43.27 5.03
1218 1264 4.436998 CGGGTGGTGTCGCTCTCC 62.437 72.222 0.00 0.00 0.00 3.71
1246 1292 0.247736 CACCTTCCTCAACCTCTCCG 59.752 60.000 0.00 0.00 0.00 4.63
1320 1366 1.599047 CTGCAACATCTCCGGGACT 59.401 57.895 0.00 0.00 0.00 3.85
1374 1420 2.486042 GTGCTCGACCTCTCGTCC 59.514 66.667 0.00 0.00 41.02 4.79
1455 1501 0.472471 TCCTCAACTCCAACCGCTTT 59.528 50.000 0.00 0.00 0.00 3.51
1650 1696 1.592400 CGCTCTCCAACCTCACCGTA 61.592 60.000 0.00 0.00 0.00 4.02
1689 1735 2.693864 CTGTCTGGCCCCATCCCT 60.694 66.667 0.00 0.00 0.00 4.20
1710 1756 2.811317 GAGCTCGGCAACCTCGTG 60.811 66.667 0.00 0.00 0.00 4.35
1725 1771 1.444553 CGTGAACCTCCAGACGCTC 60.445 63.158 0.00 0.00 0.00 5.03
2019 2065 2.183811 CTCGAGCAGCTCCACCTG 59.816 66.667 17.16 2.29 35.93 4.00
2671 2717 1.093159 CAACAAGCTCATCCTCAGCC 58.907 55.000 0.00 0.00 37.63 4.85
2761 2807 1.597027 AACAACAGGTTCTCCGGCG 60.597 57.895 0.00 0.00 33.35 6.46
2902 2948 2.747460 TGTCGAGCAATGGCCTGC 60.747 61.111 8.91 8.91 42.56 4.85
2964 3010 3.600388 GTCCCTCAACATCTCGTTCAAT 58.400 45.455 0.00 0.00 34.86 2.57
3025 3071 1.337821 GCTGTCGTCAAACTCCTACG 58.662 55.000 0.00 0.00 37.96 3.51
3054 3100 0.247736 CCAGCCTGTGTGAGTCCTAC 59.752 60.000 0.00 0.00 0.00 3.18
3066 3112 1.226888 GTCCTACGACGGGCACATC 60.227 63.158 0.00 0.00 0.00 3.06
3069 3115 1.878522 CTACGACGGGCACATCTGC 60.879 63.158 0.00 0.00 43.41 4.26
3087 3133 2.778679 GCGTCAGACATGGTTCGC 59.221 61.111 0.41 2.56 35.64 4.70
3099 3145 2.737376 GTTCGCCGGACCACACTC 60.737 66.667 5.05 0.00 0.00 3.51
3114 3160 0.673985 CACTCAAGACCGTCAGGACA 59.326 55.000 0.40 0.00 41.02 4.02
3123 3169 0.457851 CCGTCAGGACAGTGATCCTC 59.542 60.000 10.31 2.35 46.92 3.71
3133 3179 3.068064 TGATCCTCGTCTGCGCCA 61.068 61.111 4.18 0.00 38.14 5.69
3162 3208 0.720027 CGATCACTCTGCTGCTTGTG 59.280 55.000 0.00 7.47 0.00 3.33
3354 3400 4.351054 AAAGGCTGCTCGGGGGTG 62.351 66.667 0.00 0.00 0.00 4.61
3366 3412 2.264794 GGGGTGGTGTACAGAGCG 59.735 66.667 0.00 0.00 0.00 5.03
3460 3506 1.004277 CGCCGCCGAGATTCAGATAC 61.004 60.000 0.00 0.00 36.29 2.24
3498 3544 1.135859 CGGAACATTGTCAAGCTGCTC 60.136 52.381 1.00 0.00 0.00 4.26
3684 3731 2.416260 GCGATACTCCACCGGGAC 59.584 66.667 6.32 0.00 38.64 4.46
3708 3755 3.631686 TCAAGTGCAACAACATACTGCTT 59.368 39.130 0.00 0.00 41.43 3.91
3711 3758 3.822735 AGTGCAACAACATACTGCTTGAT 59.177 39.130 0.00 0.00 41.43 2.57
3842 3905 4.777896 TCCAGGCAAGTGACTTCTACTAAT 59.222 41.667 0.00 0.00 0.00 1.73
3889 3989 7.093992 ACTCTCTTCAGCATTTAGAACTGTAC 58.906 38.462 0.00 0.00 33.12 2.90
3893 3993 7.161404 TCTTCAGCATTTAGAACTGTACACAT 58.839 34.615 0.00 0.00 33.12 3.21
3895 3995 8.479313 TTCAGCATTTAGAACTGTACACATAG 57.521 34.615 0.00 0.00 33.12 2.23
3896 3996 7.611770 TCAGCATTTAGAACTGTACACATAGT 58.388 34.615 0.00 0.00 33.12 2.12
3916 4024 4.978099 AGTGTGAGTTCACCAATTGATCT 58.022 39.130 7.12 0.00 45.88 2.75
3925 4033 3.262660 TCACCAATTGATCTCACAGCTCT 59.737 43.478 7.12 0.00 0.00 4.09
3928 4036 3.622163 CCAATTGATCTCACAGCTCTGTC 59.378 47.826 7.12 0.00 42.83 3.51
3940 4048 1.065126 AGCTCTGTCACTTATTGGGGC 60.065 52.381 0.00 0.00 0.00 5.80
3950 4058 1.203052 CTTATTGGGGCAGTGCTGTTG 59.797 52.381 16.11 0.00 0.00 3.33
3992 4103 3.307059 CCTGTGGTTGCTTCTAGTAAGCT 60.307 47.826 20.35 0.00 43.38 3.74
3993 4104 4.319177 CTGTGGTTGCTTCTAGTAAGCTT 58.681 43.478 20.35 3.48 43.38 3.74
3994 4105 5.477607 TGTGGTTGCTTCTAGTAAGCTTA 57.522 39.130 20.35 0.86 43.38 3.09
3995 4106 5.860611 TGTGGTTGCTTCTAGTAAGCTTAA 58.139 37.500 20.35 10.11 43.38 1.85
3996 4107 5.699458 TGTGGTTGCTTCTAGTAAGCTTAAC 59.301 40.000 20.35 17.30 43.38 2.01
3997 4108 5.699458 GTGGTTGCTTCTAGTAAGCTTAACA 59.301 40.000 20.35 15.89 43.38 2.41
3998 4109 6.204108 GTGGTTGCTTCTAGTAAGCTTAACAA 59.796 38.462 20.35 12.25 43.38 2.83
3999 4110 6.426937 TGGTTGCTTCTAGTAAGCTTAACAAG 59.573 38.462 20.35 8.78 43.38 3.16
4028 4139 2.360165 GGTTCTTCATCCATGACCATGC 59.640 50.000 4.53 0.00 36.36 4.06
4044 4156 2.223340 CCATGCCGATTGCTTGTAGTTC 60.223 50.000 0.00 0.00 42.11 3.01
4054 4166 2.163818 CTTGTAGTTCAAGCCGGTGA 57.836 50.000 1.90 0.00 45.37 4.02
4055 4167 2.069273 CTTGTAGTTCAAGCCGGTGAG 58.931 52.381 1.90 0.00 45.37 3.51
4056 4168 1.045407 TGTAGTTCAAGCCGGTGAGT 58.955 50.000 1.90 0.00 0.00 3.41
4057 4169 1.414919 TGTAGTTCAAGCCGGTGAGTT 59.585 47.619 1.90 0.00 0.00 3.01
4058 4170 1.798813 GTAGTTCAAGCCGGTGAGTTG 59.201 52.381 1.90 2.37 0.00 3.16
4059 4171 0.535102 AGTTCAAGCCGGTGAGTTGG 60.535 55.000 1.90 0.00 0.00 3.77
4060 4172 0.534203 GTTCAAGCCGGTGAGTTGGA 60.534 55.000 1.90 0.00 0.00 3.53
4061 4173 0.400213 TTCAAGCCGGTGAGTTGGAT 59.600 50.000 1.90 0.00 0.00 3.41
4091 4203 6.180472 AGGTATTAACTGACATTGTCCTTGG 58.820 40.000 14.05 4.84 0.00 3.61
4092 4204 6.012858 AGGTATTAACTGACATTGTCCTTGGA 60.013 38.462 14.05 0.00 0.00 3.53
4093 4205 6.093633 GGTATTAACTGACATTGTCCTTGGAC 59.906 42.308 14.05 12.54 0.00 4.02
4101 4213 5.148651 ACATTGTCCTTGGACAGTAGTAC 57.851 43.478 20.03 0.00 36.35 2.73
4107 4219 5.242393 TGTCCTTGGACAGTAGTACTACAAC 59.758 44.000 29.87 20.33 38.48 3.32
4109 4221 5.834742 TCCTTGGACAGTAGTACTACAACAA 59.165 40.000 29.87 24.30 38.48 2.83
4110 4222 6.495872 TCCTTGGACAGTAGTACTACAACAAT 59.504 38.462 29.87 13.28 38.48 2.71
4111 4223 7.670979 TCCTTGGACAGTAGTACTACAACAATA 59.329 37.037 29.87 16.97 38.48 1.90
4112 4224 8.475639 CCTTGGACAGTAGTACTACAACAATAT 58.524 37.037 29.87 9.01 38.48 1.28
4115 4227 9.465199 TGGACAGTAGTACTACAACAATATACA 57.535 33.333 29.87 15.01 38.48 2.29
4116 4228 9.947669 GGACAGTAGTACTACAACAATATACAG 57.052 37.037 29.87 5.98 38.48 2.74
4164 4276 1.396301 GCATCCTTCTTCACTGAAGCG 59.604 52.381 13.24 7.26 41.36 4.68
4176 4288 0.111089 CTGAAGCGCGTTGACTTCAC 60.111 55.000 18.84 0.72 45.48 3.18
4209 4322 3.181503 CCAATGCTTAGCACATCACTGTC 60.182 47.826 9.82 0.00 43.04 3.51
4281 4445 2.472816 GCACAATGGTTTGACACTTGG 58.527 47.619 0.00 0.00 36.64 3.61
4309 4473 2.624316 TTTCAGAGTACGGCTACACG 57.376 50.000 0.00 0.00 40.31 4.49
4321 4485 1.988409 CTACACGGCGAACATCACG 59.012 57.895 16.62 0.00 0.00 4.35
4690 4862 0.831966 AGGAAGCCTGATGAGAGCAG 59.168 55.000 0.00 0.00 29.57 4.24
4697 4869 0.108945 CTGATGAGAGCAGTGTCGCA 60.109 55.000 0.00 0.00 0.00 5.10
4699 4871 1.419874 GATGAGAGCAGTGTCGCAGC 61.420 60.000 0.00 0.00 29.17 5.25
4700 4872 1.886253 ATGAGAGCAGTGTCGCAGCT 61.886 55.000 2.54 2.54 42.90 4.24
4714 4886 2.816958 AGCTGATTCAGTGGCGCG 60.817 61.111 14.90 0.00 33.43 6.86
4725 4897 3.345808 TGGCGCGTCTTCTGCAAC 61.346 61.111 13.81 0.00 0.00 4.17
4750 4930 7.073470 ACAAGAGAAATGGAGGGAGATGATATT 59.927 37.037 0.00 0.00 0.00 1.28
4762 4942 8.899887 AGGGAGATGATATTTGAAAGGAAAAA 57.100 30.769 0.00 0.00 0.00 1.94
4764 4944 8.200120 GGGAGATGATATTTGAAAGGAAAAAGG 58.800 37.037 0.00 0.00 0.00 3.11
4765 4945 8.971073 GGAGATGATATTTGAAAGGAAAAAGGA 58.029 33.333 0.00 0.00 0.00 3.36
4767 4947 9.539194 AGATGATATTTGAAAGGAAAAAGGAGT 57.461 29.630 0.00 0.00 0.00 3.85
4770 4950 9.243105 TGATATTTGAAAGGAAAAAGGAGTAGG 57.757 33.333 0.00 0.00 0.00 3.18
4771 4951 6.918067 ATTTGAAAGGAAAAAGGAGTAGGG 57.082 37.500 0.00 0.00 0.00 3.53
4772 4952 5.397553 TTGAAAGGAAAAAGGAGTAGGGT 57.602 39.130 0.00 0.00 0.00 4.34
4833 5013 6.046593 TCTTGTACAGTTTCAGATGACGTTT 58.953 36.000 0.00 0.00 0.00 3.60
4841 5021 2.863739 TCAGATGACGTTTGTAGCTCG 58.136 47.619 0.00 0.00 0.00 5.03
4850 5031 0.323629 TTTGTAGCTCGTTCTGGGGG 59.676 55.000 0.00 0.00 0.00 5.40
4868 5049 3.587061 GGGGGACTTGAATGGGAAATTTT 59.413 43.478 0.00 0.00 0.00 1.82
4869 5050 4.323485 GGGGGACTTGAATGGGAAATTTTC 60.323 45.833 0.24 0.24 0.00 2.29
4870 5051 4.532126 GGGGACTTGAATGGGAAATTTTCT 59.468 41.667 8.93 0.00 0.00 2.52
4871 5052 5.337571 GGGGACTTGAATGGGAAATTTTCTC 60.338 44.000 8.93 5.59 0.00 2.87
4873 5054 5.391312 ACTTGAATGGGAAATTTTCTCGG 57.609 39.130 8.93 0.24 30.88 4.63
4875 5056 5.304357 ACTTGAATGGGAAATTTTCTCGGTT 59.696 36.000 8.93 4.47 30.88 4.44
4876 5057 6.492087 ACTTGAATGGGAAATTTTCTCGGTTA 59.508 34.615 8.93 0.00 30.88 2.85
4903 5084 1.060937 GCTCTTGCAATACGCCACG 59.939 57.895 0.00 0.00 41.33 4.94
4904 5085 1.060937 CTCTTGCAATACGCCACGC 59.939 57.895 0.00 0.00 41.33 5.34
4907 5088 1.992233 CTTGCAATACGCCACGCCAT 61.992 55.000 0.00 0.00 41.33 4.40
4922 5103 1.598701 GCCATTGTGCCTCCCAGTTC 61.599 60.000 0.00 0.00 0.00 3.01
4934 5115 3.325135 CCTCCCAGTTCACAGTTTACTCT 59.675 47.826 0.00 0.00 0.00 3.24
4935 5116 4.202367 CCTCCCAGTTCACAGTTTACTCTT 60.202 45.833 0.00 0.00 0.00 2.85
4936 5117 4.957296 TCCCAGTTCACAGTTTACTCTTC 58.043 43.478 0.00 0.00 0.00 2.87
4937 5118 4.407621 TCCCAGTTCACAGTTTACTCTTCA 59.592 41.667 0.00 0.00 0.00 3.02
4938 5119 4.511826 CCCAGTTCACAGTTTACTCTTCAC 59.488 45.833 0.00 0.00 0.00 3.18
4939 5120 5.360591 CCAGTTCACAGTTTACTCTTCACT 58.639 41.667 0.00 0.00 0.00 3.41
4950 5131 5.591643 TTACTCTTCACTTCATTTCGCAC 57.408 39.130 0.00 0.00 0.00 5.34
4959 5140 2.679355 TCATTTCGCACTTCGTTTGG 57.321 45.000 0.00 0.00 39.67 3.28
4975 5156 4.392754 TCGTTTGGATGTGATGTGATTCTG 59.607 41.667 0.00 0.00 0.00 3.02
4977 5158 5.446875 CGTTTGGATGTGATGTGATTCTGAG 60.447 44.000 0.00 0.00 0.00 3.35
4978 5159 4.831674 TGGATGTGATGTGATTCTGAGT 57.168 40.909 0.00 0.00 0.00 3.41
4980 5161 5.910614 TGGATGTGATGTGATTCTGAGTAG 58.089 41.667 0.00 0.00 0.00 2.57
4981 5162 5.423290 TGGATGTGATGTGATTCTGAGTAGT 59.577 40.000 0.00 0.00 0.00 2.73
4982 5163 5.752472 GGATGTGATGTGATTCTGAGTAGTG 59.248 44.000 0.00 0.00 0.00 2.74
4983 5164 5.728637 TGTGATGTGATTCTGAGTAGTGT 57.271 39.130 0.00 0.00 0.00 3.55
4985 5166 5.105752 GTGATGTGATTCTGAGTAGTGTCC 58.894 45.833 0.00 0.00 0.00 4.02
4986 5167 4.772100 TGATGTGATTCTGAGTAGTGTCCA 59.228 41.667 0.00 0.00 0.00 4.02
5019 5200 1.867233 CAAGACAAGGACTGAACCACG 59.133 52.381 0.00 0.00 0.00 4.94
5020 5201 1.410004 AGACAAGGACTGAACCACGA 58.590 50.000 0.00 0.00 0.00 4.35
5024 5205 2.696707 ACAAGGACTGAACCACGAGTTA 59.303 45.455 0.00 0.00 39.40 2.24
5025 5206 3.323979 ACAAGGACTGAACCACGAGTTAT 59.676 43.478 0.00 0.00 39.40 1.89
5026 5207 4.202326 ACAAGGACTGAACCACGAGTTATT 60.202 41.667 0.00 0.00 39.40 1.40
5027 5208 3.926616 AGGACTGAACCACGAGTTATTG 58.073 45.455 0.00 0.00 39.40 1.90
5029 5210 2.415512 GACTGAACCACGAGTTATTGCC 59.584 50.000 0.00 0.00 39.40 4.52
5031 5212 2.811431 CTGAACCACGAGTTATTGCCAA 59.189 45.455 0.00 0.00 39.40 4.52
5032 5213 3.417101 TGAACCACGAGTTATTGCCAAT 58.583 40.909 0.00 0.00 39.40 3.16
5033 5214 3.438781 TGAACCACGAGTTATTGCCAATC 59.561 43.478 0.00 0.00 39.40 2.67
5034 5215 3.066291 ACCACGAGTTATTGCCAATCA 57.934 42.857 0.00 0.00 0.00 2.57
5035 5216 3.009723 ACCACGAGTTATTGCCAATCAG 58.990 45.455 0.00 0.00 0.00 2.90
5036 5217 2.223340 CCACGAGTTATTGCCAATCAGC 60.223 50.000 0.00 0.00 0.00 4.26
5037 5218 2.017049 ACGAGTTATTGCCAATCAGCC 58.983 47.619 0.00 0.00 0.00 4.85
5038 5219 2.292267 CGAGTTATTGCCAATCAGCCT 58.708 47.619 0.00 0.00 0.00 4.58
5039 5220 2.032550 CGAGTTATTGCCAATCAGCCTG 59.967 50.000 0.00 0.00 0.00 4.85
5040 5221 3.282021 GAGTTATTGCCAATCAGCCTGA 58.718 45.455 0.00 0.00 0.00 3.86
5041 5222 3.696051 GAGTTATTGCCAATCAGCCTGAA 59.304 43.478 0.00 0.00 0.00 3.02
5042 5223 3.445096 AGTTATTGCCAATCAGCCTGAAC 59.555 43.478 0.00 0.00 0.00 3.18
5043 5224 1.188863 ATTGCCAATCAGCCTGAACC 58.811 50.000 0.00 0.00 0.00 3.62
5073 5254 1.625315 TGCCAATCAGCAGACTGTAGT 59.375 47.619 3.99 0.00 44.77 2.73
5227 5409 7.167136 CGGTAACTGGTTTAAATAGAGATCGAC 59.833 40.741 8.80 0.00 0.00 4.20
5244 5426 9.810153 AGAGATCGACCTCTTCCTGTAATAGGG 62.810 48.148 2.46 0.00 40.46 3.53
5320 5503 2.590092 GGTGGCCAGCTACCGAAT 59.410 61.111 27.63 0.00 37.81 3.34
5378 5564 3.322254 CCCCGATCTAGTGAGTTGCTTAT 59.678 47.826 0.00 0.00 0.00 1.73
5388 5574 8.978472 TCTAGTGAGTTGCTTATAGTTGGTATT 58.022 33.333 0.00 0.00 0.00 1.89
5398 5584 6.872020 GCTTATAGTTGGTATTAGATTCGGCA 59.128 38.462 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.406780 CGTAGATTTCACCTAATGCCAGATC 59.593 44.000 0.00 0.00 0.00 2.75
1 2 5.070446 TCGTAGATTTCACCTAATGCCAGAT 59.930 40.000 0.00 0.00 0.00 2.90
2 3 4.404394 TCGTAGATTTCACCTAATGCCAGA 59.596 41.667 0.00 0.00 0.00 3.86
4 5 4.404394 TCTCGTAGATTTCACCTAATGCCA 59.596 41.667 0.00 0.00 33.89 4.92
6 7 6.216569 TGATCTCGTAGATTTCACCTAATGC 58.783 40.000 0.00 0.00 34.53 3.56
7 8 8.824159 ATTGATCTCGTAGATTTCACCTAATG 57.176 34.615 0.00 0.00 34.53 1.90
11 12 9.838339 AAAATATTGATCTCGTAGATTTCACCT 57.162 29.630 0.00 0.00 34.53 4.00
22 23 9.757227 TTTGTTTTCCAAAAATATTGATCTCGT 57.243 25.926 0.00 0.00 40.05 4.18
36 37 9.219603 TGTTTGAACATGTATTTGTTTTCCAAA 57.780 25.926 0.00 0.00 39.85 3.28
37 38 8.777865 TGTTTGAACATGTATTTGTTTTCCAA 57.222 26.923 0.00 0.00 39.85 3.53
53 54 8.600449 ACAAAAGTTTTGAGAATGTTTGAACA 57.400 26.923 30.20 0.00 44.06 3.18
56 57 9.567848 GTCTACAAAAGTTTTGAGAATGTTTGA 57.432 29.630 30.20 12.41 0.00 2.69
57 58 9.352784 TGTCTACAAAAGTTTTGAGAATGTTTG 57.647 29.630 30.20 10.57 0.00 2.93
58 59 9.353999 GTGTCTACAAAAGTTTTGAGAATGTTT 57.646 29.630 30.20 11.23 0.00 2.83
59 60 8.519526 TGTGTCTACAAAAGTTTTGAGAATGTT 58.480 29.630 30.20 11.87 32.88 2.71
60 61 7.968405 GTGTGTCTACAAAAGTTTTGAGAATGT 59.032 33.333 30.20 13.29 38.82 2.71
61 62 7.967854 TGTGTGTCTACAAAAGTTTTGAGAATG 59.032 33.333 30.20 15.97 38.82 2.67
62 63 8.050778 TGTGTGTCTACAAAAGTTTTGAGAAT 57.949 30.769 30.20 13.49 38.82 2.40
63 64 7.441890 TGTGTGTCTACAAAAGTTTTGAGAA 57.558 32.000 30.20 15.87 38.82 2.87
64 65 7.335673 TGATGTGTGTCTACAAAAGTTTTGAGA 59.664 33.333 30.20 23.46 38.82 3.27
65 66 7.471721 TGATGTGTGTCTACAAAAGTTTTGAG 58.528 34.615 30.20 21.97 38.82 3.02
66 67 7.384439 TGATGTGTGTCTACAAAAGTTTTGA 57.616 32.000 30.20 15.20 38.82 2.69
67 68 8.533965 CATTGATGTGTGTCTACAAAAGTTTTG 58.466 33.333 23.65 23.65 38.82 2.44
68 69 8.250332 ACATTGATGTGTGTCTACAAAAGTTTT 58.750 29.630 0.00 0.00 40.03 2.43
69 70 7.771183 ACATTGATGTGTGTCTACAAAAGTTT 58.229 30.769 0.00 0.00 40.03 2.66
70 71 7.333528 ACATTGATGTGTGTCTACAAAAGTT 57.666 32.000 0.00 0.00 40.03 2.66
71 72 6.942532 ACATTGATGTGTGTCTACAAAAGT 57.057 33.333 0.00 0.00 40.03 2.66
72 73 6.574832 CGAACATTGATGTGTGTCTACAAAAG 59.425 38.462 0.00 0.00 41.61 2.27
73 74 6.258947 TCGAACATTGATGTGTGTCTACAAAA 59.741 34.615 0.00 0.00 41.61 2.44
74 75 5.755861 TCGAACATTGATGTGTGTCTACAAA 59.244 36.000 0.00 0.00 41.61 2.83
75 76 5.293560 TCGAACATTGATGTGTGTCTACAA 58.706 37.500 0.00 0.00 41.61 2.41
76 77 4.877282 TCGAACATTGATGTGTGTCTACA 58.123 39.130 0.00 0.00 41.61 2.74
77 78 7.558991 CATATCGAACATTGATGTGTGTCTAC 58.441 38.462 0.00 0.00 41.61 2.59
78 79 6.200854 GCATATCGAACATTGATGTGTGTCTA 59.799 38.462 0.00 0.00 41.61 2.59
79 80 5.007039 GCATATCGAACATTGATGTGTGTCT 59.993 40.000 0.00 0.00 41.61 3.41
80 81 5.200454 GCATATCGAACATTGATGTGTGTC 58.800 41.667 0.00 0.00 41.61 3.67
81 82 4.635324 TGCATATCGAACATTGATGTGTGT 59.365 37.500 0.00 0.00 41.61 3.72
82 83 5.159399 TGCATATCGAACATTGATGTGTG 57.841 39.130 0.00 0.00 41.61 3.82
83 84 5.449041 GGTTGCATATCGAACATTGATGTGT 60.449 40.000 0.00 0.00 41.61 3.72
84 85 4.971830 GGTTGCATATCGAACATTGATGTG 59.028 41.667 0.00 1.23 41.61 3.21
85 86 4.883585 AGGTTGCATATCGAACATTGATGT 59.116 37.500 0.00 0.00 44.20 3.06
86 87 5.007921 TGAGGTTGCATATCGAACATTGATG 59.992 40.000 0.00 0.00 0.00 3.07
87 88 5.125356 TGAGGTTGCATATCGAACATTGAT 58.875 37.500 0.00 0.00 0.00 2.57
88 89 4.512484 TGAGGTTGCATATCGAACATTGA 58.488 39.130 0.00 0.00 0.00 2.57
89 90 4.880886 TGAGGTTGCATATCGAACATTG 57.119 40.909 0.00 0.00 0.00 2.82
90 91 5.895636 TTTGAGGTTGCATATCGAACATT 57.104 34.783 0.00 0.00 0.00 2.71
91 92 5.895636 TTTTGAGGTTGCATATCGAACAT 57.104 34.783 0.00 0.00 0.00 2.71
92 93 5.240623 ACTTTTTGAGGTTGCATATCGAACA 59.759 36.000 0.00 0.00 0.00 3.18
93 94 5.699839 ACTTTTTGAGGTTGCATATCGAAC 58.300 37.500 0.00 0.00 0.00 3.95
94 95 5.957842 ACTTTTTGAGGTTGCATATCGAA 57.042 34.783 0.00 0.00 0.00 3.71
95 96 5.705441 AGAACTTTTTGAGGTTGCATATCGA 59.295 36.000 0.00 0.00 0.00 3.59
96 97 5.942872 AGAACTTTTTGAGGTTGCATATCG 58.057 37.500 0.00 0.00 0.00 2.92
97 98 7.867403 TGAAAGAACTTTTTGAGGTTGCATATC 59.133 33.333 1.33 0.00 32.11 1.63
98 99 7.725251 TGAAAGAACTTTTTGAGGTTGCATAT 58.275 30.769 1.33 0.00 32.11 1.78
99 100 7.106439 TGAAAGAACTTTTTGAGGTTGCATA 57.894 32.000 1.33 0.00 32.11 3.14
100 101 5.976458 TGAAAGAACTTTTTGAGGTTGCAT 58.024 33.333 1.33 0.00 32.11 3.96
101 102 5.398603 TGAAAGAACTTTTTGAGGTTGCA 57.601 34.783 1.33 0.00 32.11 4.08
102 103 5.869344 AGTTGAAAGAACTTTTTGAGGTTGC 59.131 36.000 1.33 0.00 32.11 4.17
103 104 7.889589 AAGTTGAAAGAACTTTTTGAGGTTG 57.110 32.000 1.33 0.00 37.18 3.77
104 105 8.581578 TGTAAGTTGAAAGAACTTTTTGAGGTT 58.418 29.630 5.20 0.00 40.58 3.50
105 106 8.117813 TGTAAGTTGAAAGAACTTTTTGAGGT 57.882 30.769 5.20 0.00 40.58 3.85
106 107 9.586435 AATGTAAGTTGAAAGAACTTTTTGAGG 57.414 29.630 5.20 0.00 40.58 3.86
136 137 9.965824 ACATCTGATTTTATCGTTTTTGTTTCT 57.034 25.926 0.00 0.00 0.00 2.52
137 138 9.993881 CACATCTGATTTTATCGTTTTTGTTTC 57.006 29.630 0.00 0.00 0.00 2.78
138 139 9.743057 TCACATCTGATTTTATCGTTTTTGTTT 57.257 25.926 0.00 0.00 0.00 2.83
139 140 9.743057 TTCACATCTGATTTTATCGTTTTTGTT 57.257 25.926 0.00 0.00 0.00 2.83
140 141 9.912634 ATTCACATCTGATTTTATCGTTTTTGT 57.087 25.926 0.00 0.00 0.00 2.83
145 146 9.383519 ACACTATTCACATCTGATTTTATCGTT 57.616 29.630 0.00 0.00 0.00 3.85
146 147 8.948631 ACACTATTCACATCTGATTTTATCGT 57.051 30.769 0.00 0.00 0.00 3.73
147 148 9.034544 TGACACTATTCACATCTGATTTTATCG 57.965 33.333 0.00 0.00 0.00 2.92
151 152 9.017509 ACATTGACACTATTCACATCTGATTTT 57.982 29.630 0.00 0.00 0.00 1.82
152 153 8.571461 ACATTGACACTATTCACATCTGATTT 57.429 30.769 0.00 0.00 0.00 2.17
153 154 9.102757 GTACATTGACACTATTCACATCTGATT 57.897 33.333 0.00 0.00 0.00 2.57
154 155 8.481314 AGTACATTGACACTATTCACATCTGAT 58.519 33.333 0.00 0.00 0.00 2.90
155 156 7.840931 AGTACATTGACACTATTCACATCTGA 58.159 34.615 0.00 0.00 0.00 3.27
156 157 9.755804 ATAGTACATTGACACTATTCACATCTG 57.244 33.333 0.00 0.00 34.98 2.90
164 165 6.984474 CGGGTGAATAGTACATTGACACTATT 59.016 38.462 19.24 19.24 45.92 1.73
165 166 6.322969 TCGGGTGAATAGTACATTGACACTAT 59.677 38.462 0.00 8.79 39.17 2.12
166 167 5.653330 TCGGGTGAATAGTACATTGACACTA 59.347 40.000 0.00 0.00 0.00 2.74
167 168 4.464951 TCGGGTGAATAGTACATTGACACT 59.535 41.667 0.00 0.00 0.00 3.55
168 169 4.751060 TCGGGTGAATAGTACATTGACAC 58.249 43.478 0.00 0.00 0.00 3.67
169 170 5.408880 TTCGGGTGAATAGTACATTGACA 57.591 39.130 0.00 0.00 0.00 3.58
170 171 4.270325 GCTTCGGGTGAATAGTACATTGAC 59.730 45.833 0.00 0.00 32.61 3.18
171 172 4.161565 AGCTTCGGGTGAATAGTACATTGA 59.838 41.667 0.00 0.00 32.61 2.57
172 173 4.271049 CAGCTTCGGGTGAATAGTACATTG 59.729 45.833 0.00 0.00 45.32 2.82
173 174 4.442706 CAGCTTCGGGTGAATAGTACATT 58.557 43.478 0.00 0.00 45.32 2.71
174 175 3.741388 GCAGCTTCGGGTGAATAGTACAT 60.741 47.826 0.00 0.00 45.32 2.29
175 176 2.418197 GCAGCTTCGGGTGAATAGTACA 60.418 50.000 0.00 0.00 45.32 2.90
176 177 2.159085 AGCAGCTTCGGGTGAATAGTAC 60.159 50.000 0.00 0.00 45.32 2.73
177 178 2.108168 AGCAGCTTCGGGTGAATAGTA 58.892 47.619 0.00 0.00 45.32 1.82
178 179 0.905357 AGCAGCTTCGGGTGAATAGT 59.095 50.000 0.00 0.00 45.32 2.12
179 180 2.474816 GTAGCAGCTTCGGGTGAATAG 58.525 52.381 0.00 0.00 45.32 1.73
180 181 1.138266 GGTAGCAGCTTCGGGTGAATA 59.862 52.381 0.00 0.00 45.32 1.75
181 182 0.107654 GGTAGCAGCTTCGGGTGAAT 60.108 55.000 0.00 0.00 45.32 2.57
182 183 1.295423 GGTAGCAGCTTCGGGTGAA 59.705 57.895 0.00 0.00 45.32 3.18
183 184 1.264749 ATGGTAGCAGCTTCGGGTGA 61.265 55.000 0.00 0.00 45.32 4.02
184 185 0.392998 AATGGTAGCAGCTTCGGGTG 60.393 55.000 0.00 0.00 45.27 4.61
185 186 0.107654 GAATGGTAGCAGCTTCGGGT 60.108 55.000 0.00 0.00 0.00 5.28
186 187 0.107703 TGAATGGTAGCAGCTTCGGG 60.108 55.000 0.00 0.00 0.00 5.14
187 188 1.009829 GTGAATGGTAGCAGCTTCGG 58.990 55.000 0.00 0.00 0.00 4.30
188 189 1.725641 TGTGAATGGTAGCAGCTTCG 58.274 50.000 0.00 0.00 0.00 3.79
189 190 3.242543 CGAATGTGAATGGTAGCAGCTTC 60.243 47.826 0.00 0.00 0.00 3.86
190 191 2.679837 CGAATGTGAATGGTAGCAGCTT 59.320 45.455 0.00 0.00 0.00 3.74
191 192 2.093500 TCGAATGTGAATGGTAGCAGCT 60.093 45.455 0.00 0.00 0.00 4.24
192 193 2.279741 TCGAATGTGAATGGTAGCAGC 58.720 47.619 0.00 0.00 0.00 5.25
219 220 7.815641 TCGATGCACATTTAGAGATTCAAAAA 58.184 30.769 0.00 0.00 0.00 1.94
220 221 7.119699 ACTCGATGCACATTTAGAGATTCAAAA 59.880 33.333 14.39 0.00 0.00 2.44
221 222 6.595326 ACTCGATGCACATTTAGAGATTCAAA 59.405 34.615 14.39 0.00 0.00 2.69
222 223 6.108687 ACTCGATGCACATTTAGAGATTCAA 58.891 36.000 14.39 0.00 0.00 2.69
223 224 5.664457 ACTCGATGCACATTTAGAGATTCA 58.336 37.500 14.39 0.00 0.00 2.57
224 225 6.595772 AACTCGATGCACATTTAGAGATTC 57.404 37.500 14.39 0.00 0.00 2.52
225 226 6.992063 AAACTCGATGCACATTTAGAGATT 57.008 33.333 14.39 8.80 0.00 2.40
226 227 6.595326 TCAAAACTCGATGCACATTTAGAGAT 59.405 34.615 14.39 4.63 0.00 2.75
227 228 5.931724 TCAAAACTCGATGCACATTTAGAGA 59.068 36.000 14.39 0.00 0.00 3.10
228 229 6.128445 ACTCAAAACTCGATGCACATTTAGAG 60.128 38.462 0.00 0.00 0.00 2.43
229 230 5.700832 ACTCAAAACTCGATGCACATTTAGA 59.299 36.000 0.00 0.00 0.00 2.10
230 231 5.931532 ACTCAAAACTCGATGCACATTTAG 58.068 37.500 0.00 0.00 0.00 1.85
231 232 5.940192 ACTCAAAACTCGATGCACATTTA 57.060 34.783 0.00 0.00 0.00 1.40
232 233 4.836125 ACTCAAAACTCGATGCACATTT 57.164 36.364 0.00 0.00 0.00 2.32
233 234 4.275689 TCAACTCAAAACTCGATGCACATT 59.724 37.500 0.00 0.00 0.00 2.71
234 235 3.814842 TCAACTCAAAACTCGATGCACAT 59.185 39.130 0.00 0.00 0.00 3.21
235 236 3.202097 TCAACTCAAAACTCGATGCACA 58.798 40.909 0.00 0.00 0.00 4.57
236 237 3.878086 TCAACTCAAAACTCGATGCAC 57.122 42.857 0.00 0.00 0.00 4.57
237 238 3.814842 ACATCAACTCAAAACTCGATGCA 59.185 39.130 0.00 0.00 34.89 3.96
238 239 4.410492 ACATCAACTCAAAACTCGATGC 57.590 40.909 0.00 0.00 34.89 3.91
239 240 5.626543 CCAAACATCAACTCAAAACTCGATG 59.373 40.000 0.00 0.00 37.01 3.84
240 241 5.278463 CCCAAACATCAACTCAAAACTCGAT 60.278 40.000 0.00 0.00 0.00 3.59
241 242 4.036262 CCCAAACATCAACTCAAAACTCGA 59.964 41.667 0.00 0.00 0.00 4.04
242 243 4.290155 CCCAAACATCAACTCAAAACTCG 58.710 43.478 0.00 0.00 0.00 4.18
243 244 4.099419 ACCCCAAACATCAACTCAAAACTC 59.901 41.667 0.00 0.00 0.00 3.01
244 245 4.030216 ACCCCAAACATCAACTCAAAACT 58.970 39.130 0.00 0.00 0.00 2.66
245 246 4.400529 ACCCCAAACATCAACTCAAAAC 57.599 40.909 0.00 0.00 0.00 2.43
246 247 4.223923 ACAACCCCAAACATCAACTCAAAA 59.776 37.500 0.00 0.00 0.00 2.44
247 248 3.772025 ACAACCCCAAACATCAACTCAAA 59.228 39.130 0.00 0.00 0.00 2.69
248 249 3.370104 ACAACCCCAAACATCAACTCAA 58.630 40.909 0.00 0.00 0.00 3.02
249 250 3.025322 ACAACCCCAAACATCAACTCA 57.975 42.857 0.00 0.00 0.00 3.41
250 251 8.567948 CATATATACAACCCCAAACATCAACTC 58.432 37.037 0.00 0.00 0.00 3.01
251 252 7.014230 GCATATATACAACCCCAAACATCAACT 59.986 37.037 0.00 0.00 0.00 3.16
252 253 7.145323 GCATATATACAACCCCAAACATCAAC 58.855 38.462 0.00 0.00 0.00 3.18
253 254 6.266558 GGCATATATACAACCCCAAACATCAA 59.733 38.462 0.00 0.00 0.00 2.57
254 255 5.772672 GGCATATATACAACCCCAAACATCA 59.227 40.000 0.00 0.00 0.00 3.07
255 256 5.185056 GGGCATATATACAACCCCAAACATC 59.815 44.000 5.56 0.00 34.23 3.06
256 257 5.083821 GGGCATATATACAACCCCAAACAT 58.916 41.667 5.56 0.00 34.23 2.71
257 258 4.475345 GGGCATATATACAACCCCAAACA 58.525 43.478 5.56 0.00 34.23 2.83
258 259 3.504520 CGGGCATATATACAACCCCAAAC 59.495 47.826 9.81 0.00 37.25 2.93
259 260 3.394940 TCGGGCATATATACAACCCCAAA 59.605 43.478 9.81 0.00 37.25 3.28
260 261 2.980379 TCGGGCATATATACAACCCCAA 59.020 45.455 9.81 0.00 37.25 4.12
261 262 2.303600 GTCGGGCATATATACAACCCCA 59.696 50.000 9.81 0.00 37.25 4.96
262 263 2.303600 TGTCGGGCATATATACAACCCC 59.696 50.000 9.81 5.33 37.25 4.95
263 264 3.688694 TGTCGGGCATATATACAACCC 57.311 47.619 6.51 6.51 37.19 4.11
264 265 4.827692 TCATGTCGGGCATATATACAACC 58.172 43.478 0.00 0.00 35.74 3.77
265 266 6.371548 ACATTCATGTCGGGCATATATACAAC 59.628 38.462 0.00 0.00 35.87 3.32
266 267 6.472016 ACATTCATGTCGGGCATATATACAA 58.528 36.000 0.00 0.00 35.87 2.41
267 268 6.048732 ACATTCATGTCGGGCATATATACA 57.951 37.500 0.00 0.00 35.87 2.29
268 269 6.371548 ACAACATTCATGTCGGGCATATATAC 59.628 38.462 0.00 0.00 40.80 1.47
269 270 6.472016 ACAACATTCATGTCGGGCATATATA 58.528 36.000 0.00 0.00 40.80 0.86
270 271 5.316167 ACAACATTCATGTCGGGCATATAT 58.684 37.500 0.00 0.00 40.80 0.86
271 272 4.713553 ACAACATTCATGTCGGGCATATA 58.286 39.130 0.00 0.00 40.80 0.86
272 273 3.554934 ACAACATTCATGTCGGGCATAT 58.445 40.909 0.00 0.00 40.80 1.78
273 274 2.942376 GACAACATTCATGTCGGGCATA 59.058 45.455 0.00 0.00 40.80 3.14
274 275 1.745087 GACAACATTCATGTCGGGCAT 59.255 47.619 0.00 0.00 40.80 4.40
275 276 1.164411 GACAACATTCATGTCGGGCA 58.836 50.000 0.00 0.00 40.80 5.36
276 277 3.996825 GACAACATTCATGTCGGGC 57.003 52.632 0.00 0.00 40.80 6.13
329 330 8.567948 ACGTGAGATCAACAAAAAGTTAATCAT 58.432 29.630 0.00 0.00 37.34 2.45
330 331 7.925993 ACGTGAGATCAACAAAAAGTTAATCA 58.074 30.769 0.00 0.00 37.34 2.57
331 332 9.872757 TTACGTGAGATCAACAAAAAGTTAATC 57.127 29.630 0.00 0.00 38.74 1.75
336 337 9.659830 GTAATTTACGTGAGATCAACAAAAAGT 57.340 29.630 0.00 0.00 0.00 2.66
337 338 9.113876 GGTAATTTACGTGAGATCAACAAAAAG 57.886 33.333 0.00 0.00 0.00 2.27
338 339 8.622157 TGGTAATTTACGTGAGATCAACAAAAA 58.378 29.630 0.00 0.00 0.00 1.94
339 340 8.155821 TGGTAATTTACGTGAGATCAACAAAA 57.844 30.769 0.00 0.00 0.00 2.44
340 341 7.572353 GCTGGTAATTTACGTGAGATCAACAAA 60.572 37.037 0.00 0.00 0.00 2.83
341 342 6.128391 GCTGGTAATTTACGTGAGATCAACAA 60.128 38.462 0.00 0.00 0.00 2.83
342 343 5.350365 GCTGGTAATTTACGTGAGATCAACA 59.650 40.000 0.00 0.00 0.00 3.33
343 344 5.581085 AGCTGGTAATTTACGTGAGATCAAC 59.419 40.000 0.00 0.00 0.00 3.18
344 345 5.730550 AGCTGGTAATTTACGTGAGATCAA 58.269 37.500 0.00 0.00 0.00 2.57
345 346 5.339008 AGCTGGTAATTTACGTGAGATCA 57.661 39.130 0.00 0.00 0.00 2.92
346 347 6.736123 TCTAGCTGGTAATTTACGTGAGATC 58.264 40.000 0.00 0.00 0.00 2.75
347 348 6.239064 CCTCTAGCTGGTAATTTACGTGAGAT 60.239 42.308 0.00 0.00 0.00 2.75
348 349 5.067413 CCTCTAGCTGGTAATTTACGTGAGA 59.933 44.000 0.00 0.00 0.00 3.27
349 350 5.282510 CCTCTAGCTGGTAATTTACGTGAG 58.717 45.833 0.00 0.00 0.00 3.51
350 351 4.441079 GCCTCTAGCTGGTAATTTACGTGA 60.441 45.833 0.00 0.00 38.99 4.35
351 352 3.802685 GCCTCTAGCTGGTAATTTACGTG 59.197 47.826 0.00 0.00 38.99 4.49
352 353 3.449737 TGCCTCTAGCTGGTAATTTACGT 59.550 43.478 0.00 0.00 44.23 3.57
353 354 4.054780 TGCCTCTAGCTGGTAATTTACG 57.945 45.455 0.00 0.00 44.23 3.18
354 355 4.273724 GCTTGCCTCTAGCTGGTAATTTAC 59.726 45.833 0.00 0.00 44.23 2.01
355 356 4.080582 TGCTTGCCTCTAGCTGGTAATTTA 60.081 41.667 0.00 0.00 44.23 1.40
356 357 3.282885 GCTTGCCTCTAGCTGGTAATTT 58.717 45.455 0.00 0.00 44.23 1.82
357 358 2.239654 TGCTTGCCTCTAGCTGGTAATT 59.760 45.455 0.00 0.00 44.23 1.40
358 359 1.839994 TGCTTGCCTCTAGCTGGTAAT 59.160 47.619 0.00 0.00 44.23 1.89
359 360 1.275666 TGCTTGCCTCTAGCTGGTAA 58.724 50.000 0.00 0.00 44.23 2.85
360 361 1.066143 GTTGCTTGCCTCTAGCTGGTA 60.066 52.381 0.00 0.00 44.23 3.25
361 362 0.322008 GTTGCTTGCCTCTAGCTGGT 60.322 55.000 0.00 0.00 44.23 4.00
362 363 0.321919 TGTTGCTTGCCTCTAGCTGG 60.322 55.000 0.00 0.00 44.23 4.85
363 364 0.801251 GTGTTGCTTGCCTCTAGCTG 59.199 55.000 0.00 0.00 44.23 4.24
364 365 0.671781 CGTGTTGCTTGCCTCTAGCT 60.672 55.000 0.00 0.00 44.23 3.32
380 381 0.591170 ACTGCAATTTTCGTCCCGTG 59.409 50.000 0.00 0.00 0.00 4.94
384 385 5.746721 ACTTGTTTAACTGCAATTTTCGTCC 59.253 36.000 0.00 0.00 0.00 4.79
388 389 6.035975 AGTGCACTTGTTTAACTGCAATTTTC 59.964 34.615 15.25 1.15 37.36 2.29
446 451 1.833049 CCACTAGGTCGGGGGCTAG 60.833 68.421 0.00 0.00 0.00 3.42
511 516 2.435586 CCTCGCTTGTCCTGGCAG 60.436 66.667 7.75 7.75 0.00 4.85
512 517 2.337879 AAACCTCGCTTGTCCTGGCA 62.338 55.000 0.00 0.00 0.00 4.92
535 549 2.167662 GAATTGGGGTTAGTGGTGGTG 58.832 52.381 0.00 0.00 0.00 4.17
536 550 1.783979 TGAATTGGGGTTAGTGGTGGT 59.216 47.619 0.00 0.00 0.00 4.16
537 551 2.595750 TGAATTGGGGTTAGTGGTGG 57.404 50.000 0.00 0.00 0.00 4.61
538 552 2.825532 CCTTGAATTGGGGTTAGTGGTG 59.174 50.000 0.00 0.00 0.00 4.17
580 595 9.674824 CGGGTGTAGAGTAGTACTATTTTTATG 57.325 37.037 5.75 0.00 0.00 1.90
582 597 7.339212 TGCGGGTGTAGAGTAGTACTATTTTTA 59.661 37.037 5.75 0.00 0.00 1.52
585 600 5.067023 GTGCGGGTGTAGAGTAGTACTATTT 59.933 44.000 5.75 0.00 0.00 1.40
587 602 4.133078 GTGCGGGTGTAGAGTAGTACTAT 58.867 47.826 5.75 2.22 0.00 2.12
588 603 3.055167 TGTGCGGGTGTAGAGTAGTACTA 60.055 47.826 1.88 0.00 0.00 1.82
591 606 2.086869 GTGTGCGGGTGTAGAGTAGTA 58.913 52.381 0.00 0.00 0.00 1.82
594 609 0.885879 CTGTGTGCGGGTGTAGAGTA 59.114 55.000 0.00 0.00 0.00 2.59
595 610 1.666011 CTGTGTGCGGGTGTAGAGT 59.334 57.895 0.00 0.00 0.00 3.24
597 612 2.342279 GCTGTGTGCGGGTGTAGA 59.658 61.111 0.00 0.00 0.00 2.59
598 613 2.742372 GGCTGTGTGCGGGTGTAG 60.742 66.667 0.00 0.00 44.05 2.74
599 614 4.673298 CGGCTGTGTGCGGGTGTA 62.673 66.667 0.00 0.00 44.05 2.90
605 620 4.662961 TGTCCTCGGCTGTGTGCG 62.663 66.667 0.00 0.00 44.05 5.34
606 621 2.740055 CTGTCCTCGGCTGTGTGC 60.740 66.667 0.00 0.00 41.94 4.57
607 622 1.080230 CTCTGTCCTCGGCTGTGTG 60.080 63.158 0.00 0.00 0.00 3.82
608 623 1.228583 TCTCTGTCCTCGGCTGTGT 60.229 57.895 0.00 0.00 0.00 3.72
621 636 4.186926 CACACTCTCTCTCTCTCTCTCTG 58.813 52.174 0.00 0.00 0.00 3.35
634 649 4.647615 AACGCGCGCACACTCTCT 62.648 61.111 32.58 3.21 0.00 3.10
636 651 4.942481 TGAACGCGCGCACACTCT 62.942 61.111 32.58 5.07 0.00 3.24
638 653 2.964924 CTTTTGAACGCGCGCACACT 62.965 55.000 32.58 11.70 0.00 3.55
663 686 3.086600 CCTGTCTGGCTCCCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
664 687 3.086600 CCCTGTCTGGCTCCCTCC 61.087 72.222 0.00 0.00 0.00 4.30
667 690 3.791586 GCTCCCTGTCTGGCTCCC 61.792 72.222 0.00 0.00 0.00 4.30
668 691 3.005539 TGCTCCCTGTCTGGCTCC 61.006 66.667 0.00 0.00 0.00 4.70
716 741 0.886490 CCCAAGACGCATATGGAGGC 60.886 60.000 4.56 0.00 36.27 4.70
717 742 0.469917 ACCCAAGACGCATATGGAGG 59.530 55.000 4.56 0.00 36.27 4.30
718 743 1.586422 CACCCAAGACGCATATGGAG 58.414 55.000 4.56 0.00 36.27 3.86
719 744 0.463654 GCACCCAAGACGCATATGGA 60.464 55.000 4.56 0.00 36.27 3.41
720 745 1.775039 CGCACCCAAGACGCATATGG 61.775 60.000 4.56 0.00 0.00 2.74
760 785 2.436824 GAGGGGGAGCTTTGCGTC 60.437 66.667 0.00 0.00 0.00 5.19
762 787 4.803908 GGGAGGGGGAGCTTTGCG 62.804 72.222 0.00 0.00 0.00 4.85
833 879 3.090532 GGTGGCTAGTGGGAGGGG 61.091 72.222 0.00 0.00 0.00 4.79
836 882 1.379977 TCTCGGTGGCTAGTGGGAG 60.380 63.158 0.00 0.00 0.00 4.30
837 883 1.379977 CTCTCGGTGGCTAGTGGGA 60.380 63.158 0.00 0.00 0.00 4.37
839 885 2.427245 CCCTCTCGGTGGCTAGTGG 61.427 68.421 0.00 0.00 0.00 4.00
841 887 2.760385 GCCCTCTCGGTGGCTAGT 60.760 66.667 0.00 0.00 44.46 2.57
905 951 3.558099 TATCCGATCAGCAGCGGCG 62.558 63.158 0.51 0.51 46.79 6.46
932 978 2.744741 CGCTTCTTTCCTTCCTTCCTTC 59.255 50.000 0.00 0.00 0.00 3.46
933 979 2.784347 CGCTTCTTTCCTTCCTTCCTT 58.216 47.619 0.00 0.00 0.00 3.36
934 980 1.611936 GCGCTTCTTTCCTTCCTTCCT 60.612 52.381 0.00 0.00 0.00 3.36
936 982 1.735018 GAGCGCTTCTTTCCTTCCTTC 59.265 52.381 13.26 0.00 0.00 3.46
938 984 0.390472 CGAGCGCTTCTTTCCTTCCT 60.390 55.000 13.26 0.00 0.00 3.36
940 986 1.149148 AACGAGCGCTTCTTTCCTTC 58.851 50.000 13.26 0.00 0.00 3.46
941 987 1.531578 GAAACGAGCGCTTCTTTCCTT 59.468 47.619 21.59 7.28 0.00 3.36
942 988 1.149148 GAAACGAGCGCTTCTTTCCT 58.851 50.000 21.59 2.64 0.00 3.36
944 990 1.792949 TCTGAAACGAGCGCTTCTTTC 59.207 47.619 23.81 23.81 0.00 2.62
945 991 1.527311 GTCTGAAACGAGCGCTTCTTT 59.473 47.619 13.26 12.33 0.00 2.52
946 992 1.140816 GTCTGAAACGAGCGCTTCTT 58.859 50.000 13.26 5.18 0.00 2.52
947 993 0.315568 AGTCTGAAACGAGCGCTTCT 59.684 50.000 13.26 0.00 0.00 2.85
948 994 1.140816 AAGTCTGAAACGAGCGCTTC 58.859 50.000 13.26 5.45 0.00 3.86
949 995 1.583054 AAAGTCTGAAACGAGCGCTT 58.417 45.000 13.26 0.00 0.00 4.68
950 996 1.583054 AAAAGTCTGAAACGAGCGCT 58.417 45.000 11.27 11.27 0.00 5.92
951 997 2.384899 AAAAAGTCTGAAACGAGCGC 57.615 45.000 0.00 0.00 0.00 5.92
1218 1264 1.303643 GAGGAAGGTGTTGGGCAGG 60.304 63.158 0.00 0.00 0.00 4.85
1320 1366 2.599578 GCGTAGGAGGGCGGGATA 60.600 66.667 0.00 0.00 0.00 2.59
1329 1375 3.597728 GCGAGGGAGGCGTAGGAG 61.598 72.222 0.00 0.00 0.00 3.69
1510 1556 2.495084 GTTGAAGAGGTTGTCCTGGAC 58.505 52.381 19.96 19.96 45.24 4.02
1671 1717 2.692368 GGGATGGGGCCAGACAGA 60.692 66.667 4.39 0.00 0.00 3.41
1674 1720 2.692368 TCAGGGATGGGGCCAGAC 60.692 66.667 4.39 0.00 0.00 3.51
1689 1735 2.604686 AGGTTGCCGAGCTCCTCA 60.605 61.111 8.47 3.10 31.10 3.86
1710 1756 2.507324 GCGAGCGTCTGGAGGTTC 60.507 66.667 0.00 0.00 0.00 3.62
1725 1771 3.077705 CCGGTGTCGTACAATGCG 58.922 61.111 0.00 0.00 33.95 4.73
2013 2059 1.301716 CTGGTTGTCCGACAGGTGG 60.302 63.158 0.64 0.00 39.05 4.61
2019 2065 2.022129 CGTGAGCTGGTTGTCCGAC 61.022 63.158 0.00 0.00 36.30 4.79
2058 2104 2.979197 GAGGCTGCTGCAGTTGCTG 61.979 63.158 28.50 13.83 42.66 4.41
2155 2201 1.318158 GCATTGCCCCAGAGGAACAG 61.318 60.000 0.00 0.00 38.24 3.16
2434 2480 1.628846 GTACAGGTCCAGGAACACCAT 59.371 52.381 7.43 0.00 34.80 3.55
2704 2750 1.534595 CAGCTTCTGCAGGTTCTGAAC 59.465 52.381 15.13 12.05 42.74 3.18
2751 2797 2.657620 GGTATCGCGCCGGAGAAC 60.658 66.667 10.31 0.36 0.00 3.01
2902 2948 3.190849 CACCGAGATGCTGCCGTG 61.191 66.667 0.00 0.00 0.00 4.94
2964 3010 1.143183 GATGGCGCCGGAGAAGTTA 59.857 57.895 23.90 0.00 0.00 2.24
3066 3112 1.959899 GAACCATGTCTGACGCGCAG 61.960 60.000 19.99 19.99 46.31 5.18
3069 3115 3.071459 GCGAACCATGTCTGACGCG 62.071 63.158 3.53 3.53 37.06 6.01
3087 3133 1.004918 GGTCTTGAGTGTGGTCCGG 60.005 63.158 0.00 0.00 0.00 5.14
3114 3160 2.492090 GCGCAGACGAGGATCACT 59.508 61.111 0.30 0.00 43.93 3.41
3123 3169 1.062525 GCCTAAAATGGCGCAGACG 59.937 57.895 10.83 0.00 41.59 4.18
3133 3179 3.133721 AGCAGAGTGATCGAGCCTAAAAT 59.866 43.478 0.00 0.00 0.00 1.82
3162 3208 0.984230 TGAACAGGATCCAGACCACC 59.016 55.000 15.82 0.00 0.00 4.61
3348 3394 2.669240 GCTCTGTACACCACCCCC 59.331 66.667 0.00 0.00 0.00 5.40
3351 3397 1.215647 CTCCGCTCTGTACACCACC 59.784 63.158 0.00 0.00 0.00 4.61
3354 3400 0.528684 GCATCTCCGCTCTGTACACC 60.529 60.000 0.00 0.00 0.00 4.16
3393 3439 2.333014 GTCTTCCAGAGCTTCTTCACG 58.667 52.381 0.00 0.00 0.00 4.35
3460 3506 1.377725 GGTGCCTGATGTGACCCAG 60.378 63.158 0.00 0.00 0.00 4.45
3498 3544 1.719780 GACTTGTTCGAGCAGTAACCG 59.280 52.381 1.23 0.00 0.00 4.44
3639 3686 2.806019 GCAGTCATGGTGCAGATAGGAG 60.806 54.545 14.08 0.00 40.86 3.69
3684 3731 3.544651 CAGTATGTTGTTGCACTTGACG 58.455 45.455 0.00 0.00 0.00 4.35
3708 3755 4.215908 AGTAGGCCTCATACTTCGAATCA 58.784 43.478 9.68 0.00 29.01 2.57
3711 3758 3.132289 CCAAGTAGGCCTCATACTTCGAA 59.868 47.826 9.68 0.00 40.61 3.71
3855 3918 6.842437 AATGCTGAAGAGAGTAACAGTAGA 57.158 37.500 0.00 0.00 33.57 2.59
3858 3921 7.233389 TCTAAATGCTGAAGAGAGTAACAGT 57.767 36.000 0.00 0.00 33.57 3.55
3859 3922 7.816995 AGTTCTAAATGCTGAAGAGAGTAACAG 59.183 37.037 0.00 0.00 0.00 3.16
3861 3924 7.600752 ACAGTTCTAAATGCTGAAGAGAGTAAC 59.399 37.037 0.00 0.00 34.60 2.50
3867 3967 6.646653 TGTGTACAGTTCTAAATGCTGAAGAG 59.353 38.462 0.00 0.00 34.60 2.85
3900 4000 3.755378 GCTGTGAGATCAATTGGTGAACT 59.245 43.478 5.42 0.00 41.77 3.01
3916 4024 3.306989 CCCAATAAGTGACAGAGCTGTGA 60.307 47.826 19.13 0.00 45.05 3.58
3925 4033 1.886222 GCACTGCCCCAATAAGTGACA 60.886 52.381 6.24 0.00 43.22 3.58
3928 4036 0.813184 CAGCACTGCCCCAATAAGTG 59.187 55.000 0.00 0.00 43.37 3.16
3940 4048 2.632643 TGCTTAGGCAACAGCACTG 58.367 52.632 0.00 0.00 46.36 3.66
3950 4058 4.013050 AGGTCAAAGATTCTTGCTTAGGC 58.987 43.478 0.00 0.00 39.26 3.93
3992 4103 8.573035 GGATGAAGAACCATGTTAACTTGTTAA 58.427 33.333 17.43 2.22 0.00 2.01
3993 4104 7.721842 TGGATGAAGAACCATGTTAACTTGTTA 59.278 33.333 17.43 0.02 0.00 2.41
3994 4105 6.549364 TGGATGAAGAACCATGTTAACTTGTT 59.451 34.615 17.43 12.36 0.00 2.83
3995 4106 6.068010 TGGATGAAGAACCATGTTAACTTGT 58.932 36.000 17.43 5.35 0.00 3.16
3996 4107 6.573664 TGGATGAAGAACCATGTTAACTTG 57.426 37.500 13.22 13.22 0.00 3.16
4044 4156 0.523072 CAATCCAACTCACCGGCTTG 59.477 55.000 0.00 0.00 0.00 4.01
4049 4161 2.233922 ACCTAGTCAATCCAACTCACCG 59.766 50.000 0.00 0.00 0.00 4.94
4052 4164 8.258007 CAGTTAATACCTAGTCAATCCAACTCA 58.742 37.037 0.00 0.00 0.00 3.41
4053 4165 8.475639 TCAGTTAATACCTAGTCAATCCAACTC 58.524 37.037 0.00 0.00 0.00 3.01
4054 4166 8.258708 GTCAGTTAATACCTAGTCAATCCAACT 58.741 37.037 0.00 0.00 0.00 3.16
4055 4167 8.038944 TGTCAGTTAATACCTAGTCAATCCAAC 58.961 37.037 0.00 0.00 0.00 3.77
4056 4168 8.141298 TGTCAGTTAATACCTAGTCAATCCAA 57.859 34.615 0.00 0.00 0.00 3.53
4057 4169 7.727578 TGTCAGTTAATACCTAGTCAATCCA 57.272 36.000 0.00 0.00 0.00 3.41
4058 4170 9.046296 CAATGTCAGTTAATACCTAGTCAATCC 57.954 37.037 0.00 0.00 0.00 3.01
4059 4171 9.601217 ACAATGTCAGTTAATACCTAGTCAATC 57.399 33.333 0.00 0.00 0.00 2.67
4060 4172 9.601217 GACAATGTCAGTTAATACCTAGTCAAT 57.399 33.333 8.74 0.00 32.09 2.57
4061 4173 8.038944 GGACAATGTCAGTTAATACCTAGTCAA 58.961 37.037 15.86 0.00 33.68 3.18
4101 4213 8.568794 TCTAGCAGCTACTGTATATTGTTGTAG 58.431 37.037 0.00 0.00 33.43 2.74
4107 4219 8.356657 AGAAACTCTAGCAGCTACTGTATATTG 58.643 37.037 0.00 0.00 33.43 1.90
4109 4221 7.721842 TGAGAAACTCTAGCAGCTACTGTATAT 59.278 37.037 0.00 0.00 33.43 0.86
4110 4222 7.012515 GTGAGAAACTCTAGCAGCTACTGTATA 59.987 40.741 0.00 0.00 33.43 1.47
4111 4223 5.888724 TGAGAAACTCTAGCAGCTACTGTAT 59.111 40.000 0.00 0.00 33.43 2.29
4112 4224 5.124138 GTGAGAAACTCTAGCAGCTACTGTA 59.876 44.000 0.00 0.00 33.43 2.74
4113 4225 4.082463 GTGAGAAACTCTAGCAGCTACTGT 60.082 45.833 0.00 0.00 33.43 3.55
4114 4226 4.082517 TGTGAGAAACTCTAGCAGCTACTG 60.083 45.833 0.00 0.00 34.12 2.74
4115 4227 4.082845 TGTGAGAAACTCTAGCAGCTACT 58.917 43.478 0.00 0.00 0.00 2.57
4116 4228 4.442375 TGTGAGAAACTCTAGCAGCTAC 57.558 45.455 0.00 0.00 0.00 3.58
4176 4288 2.642139 AAGCATTGGAATCAACAGCG 57.358 45.000 0.00 0.00 40.20 5.18
4209 4322 9.425893 CACTTCAGTATAATTACGCAAATCAAG 57.574 33.333 0.00 0.00 33.32 3.02
4281 4445 3.062774 GCCGTACTCTGAAATGAAGAAGC 59.937 47.826 0.00 0.00 0.00 3.86
4309 4473 0.108804 TCTTCTCCGTGATGTTCGCC 60.109 55.000 0.00 0.00 0.00 5.54
4321 4485 0.520404 TGTACACGTCGCTCTTCTCC 59.480 55.000 0.00 0.00 0.00 3.71
4682 4854 2.048784 GCTGCGACACTGCTCTCA 60.049 61.111 0.00 0.00 39.94 3.27
4690 4862 0.441533 CACTGAATCAGCTGCGACAC 59.558 55.000 9.47 0.00 34.37 3.67
4697 4869 2.816958 CGCGCCACTGAATCAGCT 60.817 61.111 10.62 0.00 34.37 4.24
4699 4871 1.016130 AAGACGCGCCACTGAATCAG 61.016 55.000 5.73 8.98 37.52 2.90
4700 4872 1.005037 AAGACGCGCCACTGAATCA 60.005 52.632 5.73 0.00 0.00 2.57
4714 4886 4.516698 TCCATTTCTCTTGTTGCAGAAGAC 59.483 41.667 6.23 0.00 30.32 3.01
4725 4897 4.767578 TCATCTCCCTCCATTTCTCTTG 57.232 45.455 0.00 0.00 0.00 3.02
4750 4930 5.397553 ACCCTACTCCTTTTTCCTTTCAA 57.602 39.130 0.00 0.00 0.00 2.69
4762 4942 5.656859 GGCAATTATCAAAAACCCTACTCCT 59.343 40.000 0.00 0.00 0.00 3.69
4764 4944 6.775594 AGGCAATTATCAAAAACCCTACTC 57.224 37.500 0.00 0.00 0.00 2.59
4765 4945 6.321435 GCTAGGCAATTATCAAAAACCCTACT 59.679 38.462 0.00 0.00 0.00 2.57
4766 4946 6.321435 AGCTAGGCAATTATCAAAAACCCTAC 59.679 38.462 0.00 0.00 0.00 3.18
4767 4947 6.431722 AGCTAGGCAATTATCAAAAACCCTA 58.568 36.000 0.00 0.00 0.00 3.53
4768 4948 5.272402 AGCTAGGCAATTATCAAAAACCCT 58.728 37.500 0.00 0.00 0.00 4.34
4770 4950 6.039829 AGCTAGCTAGGCAATTATCAAAAACC 59.960 38.462 17.69 0.00 0.00 3.27
4771 4951 7.032377 AGCTAGCTAGGCAATTATCAAAAAC 57.968 36.000 17.69 0.00 0.00 2.43
4772 4952 7.645058 AAGCTAGCTAGGCAATTATCAAAAA 57.355 32.000 19.70 0.00 0.00 1.94
4833 5013 1.077805 TCCCCCAGAACGAGCTACA 59.922 57.895 0.00 0.00 0.00 2.74
4841 5021 1.616994 CCCATTCAAGTCCCCCAGAAC 60.617 57.143 0.00 0.00 0.00 3.01
4850 5031 5.048013 ACCGAGAAAATTTCCCATTCAAGTC 60.048 40.000 1.57 0.00 0.00 3.01
4868 5049 5.121768 GCAAGAGCAAACTAAATAACCGAGA 59.878 40.000 0.00 0.00 41.58 4.04
4869 5050 5.324697 GCAAGAGCAAACTAAATAACCGAG 58.675 41.667 0.00 0.00 41.58 4.63
4870 5051 5.291293 GCAAGAGCAAACTAAATAACCGA 57.709 39.130 0.00 0.00 41.58 4.69
4895 5076 3.427425 GCACAATGGCGTGGCGTA 61.427 61.111 0.00 0.00 37.37 4.42
4903 5084 1.598701 GAACTGGGAGGCACAATGGC 61.599 60.000 0.00 0.00 44.10 4.40
4904 5085 0.251297 TGAACTGGGAGGCACAATGG 60.251 55.000 0.00 0.00 0.00 3.16
4907 5088 0.179020 CTGTGAACTGGGAGGCACAA 60.179 55.000 0.00 0.00 40.34 3.33
4922 5103 7.065894 CGAAATGAAGTGAAGAGTAAACTGTG 58.934 38.462 0.00 0.00 0.00 3.66
4934 5115 2.869801 ACGAAGTGCGAAATGAAGTGAA 59.130 40.909 0.00 0.00 42.51 3.18
4935 5116 2.479837 ACGAAGTGCGAAATGAAGTGA 58.520 42.857 0.00 0.00 42.51 3.41
4936 5117 2.949714 ACGAAGTGCGAAATGAAGTG 57.050 45.000 0.00 0.00 42.51 3.16
4937 5118 3.548014 CCAAACGAAGTGCGAAATGAAGT 60.548 43.478 0.00 0.00 45.00 3.01
4938 5119 2.973224 CCAAACGAAGTGCGAAATGAAG 59.027 45.455 0.00 0.00 45.00 3.02
4939 5120 2.614520 TCCAAACGAAGTGCGAAATGAA 59.385 40.909 0.00 0.00 45.00 2.57
4950 5131 4.952262 ATCACATCACATCCAAACGAAG 57.048 40.909 0.00 0.00 0.00 3.79
4959 5140 6.336566 ACACTACTCAGAATCACATCACATC 58.663 40.000 0.00 0.00 0.00 3.06
4975 5156 3.452474 GATGCTGACATGGACACTACTC 58.548 50.000 0.00 0.00 36.35 2.59
4977 5158 2.196749 CGATGCTGACATGGACACTAC 58.803 52.381 0.00 0.00 36.35 2.73
4978 5159 1.471501 GCGATGCTGACATGGACACTA 60.472 52.381 0.00 0.00 36.35 2.74
4980 5161 1.709147 GGCGATGCTGACATGGACAC 61.709 60.000 0.00 0.00 39.69 3.67
4981 5162 1.450134 GGCGATGCTGACATGGACA 60.450 57.895 0.00 0.00 39.69 4.02
4982 5163 1.026182 TTGGCGATGCTGACATGGAC 61.026 55.000 0.00 0.00 40.30 4.02
4983 5164 0.745486 CTTGGCGATGCTGACATGGA 60.745 55.000 0.00 0.00 36.35 3.41
4985 5166 0.376152 GTCTTGGCGATGCTGACATG 59.624 55.000 0.00 0.00 36.35 3.21
4986 5167 0.036105 TGTCTTGGCGATGCTGACAT 60.036 50.000 0.00 0.00 39.98 3.06
5019 5200 3.282021 TCAGGCTGATTGGCAATAACTC 58.718 45.455 14.43 1.82 44.55 3.01
5020 5201 3.370840 TCAGGCTGATTGGCAATAACT 57.629 42.857 14.43 6.19 44.55 2.24
5024 5205 1.188863 GGTTCAGGCTGATTGGCAAT 58.811 50.000 19.50 13.54 44.55 3.56
5025 5206 0.178967 TGGTTCAGGCTGATTGGCAA 60.179 50.000 19.50 0.68 44.55 4.52
5026 5207 0.895100 GTGGTTCAGGCTGATTGGCA 60.895 55.000 19.50 0.00 44.55 4.92
5027 5208 1.885871 GTGGTTCAGGCTGATTGGC 59.114 57.895 19.50 8.95 42.15 4.52
5029 5210 1.081892 CTCGTGGTTCAGGCTGATTG 58.918 55.000 19.50 6.81 0.00 2.67
5031 5212 0.687354 AACTCGTGGTTCAGGCTGAT 59.313 50.000 19.50 0.00 31.69 2.90
5032 5213 1.334160 TAACTCGTGGTTCAGGCTGA 58.666 50.000 14.43 14.43 39.17 4.26
5033 5214 2.386661 ATAACTCGTGGTTCAGGCTG 57.613 50.000 8.58 8.58 39.17 4.85
5034 5215 2.699954 CAATAACTCGTGGTTCAGGCT 58.300 47.619 0.47 0.00 39.17 4.58
5035 5216 1.130561 GCAATAACTCGTGGTTCAGGC 59.869 52.381 0.47 0.00 39.17 4.85
5036 5217 1.737793 GGCAATAACTCGTGGTTCAGG 59.262 52.381 0.47 0.00 39.17 3.86
5037 5218 2.422597 TGGCAATAACTCGTGGTTCAG 58.577 47.619 0.00 0.00 39.17 3.02
5038 5219 2.552599 TGGCAATAACTCGTGGTTCA 57.447 45.000 0.00 0.00 39.17 3.18
5039 5220 3.438781 TGATTGGCAATAACTCGTGGTTC 59.561 43.478 13.65 0.00 39.17 3.62
5040 5221 3.417101 TGATTGGCAATAACTCGTGGTT 58.583 40.909 13.65 2.69 41.54 3.67
5041 5222 3.009723 CTGATTGGCAATAACTCGTGGT 58.990 45.455 13.65 0.00 0.00 4.16
5042 5223 2.223340 GCTGATTGGCAATAACTCGTGG 60.223 50.000 13.65 0.00 0.00 4.94
5043 5224 2.419673 TGCTGATTGGCAATAACTCGTG 59.580 45.455 13.65 0.42 39.43 4.35
5073 5254 0.911769 ATCTTCTGTTGCCGGATCCA 59.088 50.000 13.41 0.00 0.00 3.41
5174 5355 1.376609 GATTAACGGGCCAGGCTGTG 61.377 60.000 12.43 6.19 0.00 3.66
5244 5426 1.543429 CCGTCATTCCAATCCTAGCCC 60.543 57.143 0.00 0.00 0.00 5.19
5378 5564 5.221382 GGACTGCCGAATCTAATACCAACTA 60.221 44.000 0.00 0.00 0.00 2.24
5388 5574 1.403814 CTCCAGGACTGCCGAATCTA 58.596 55.000 0.00 0.00 39.96 1.98
5490 5676 2.048503 GCAACAGGGCGTAGACGT 60.049 61.111 3.73 0.00 42.22 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.