Multiple sequence alignment - TraesCS7A01G367900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G367900 chr7A 100.000 3489 0 0 695 4183 540950644 540954132 0.000000e+00 6444.0
1 TraesCS7A01G367900 chr7A 100.000 334 0 0 1 334 540949950 540950283 5.940000e-173 617.0
2 TraesCS7A01G367900 chr7D 91.644 1843 121 18 1664 3485 459080774 459078944 0.000000e+00 2519.0
3 TraesCS7A01G367900 chr7D 87.383 642 61 15 3548 4183 459078948 459078321 0.000000e+00 719.0
4 TraesCS7A01G367900 chr7D 80.483 953 99 47 695 1617 459081755 459080860 0.000000e+00 649.0
5 TraesCS7A01G367900 chr7D 83.333 222 12 8 116 334 459082041 459081842 9.240000e-42 182.0
6 TraesCS7A01G367900 chr7D 97.619 42 1 0 3507 3548 553264113 553264154 5.800000e-09 73.1
7 TraesCS7A01G367900 chr7B 91.006 1868 142 18 1653 3507 481070565 481068711 0.000000e+00 2495.0
8 TraesCS7A01G367900 chr7B 89.455 550 42 12 3550 4096 481068620 481068084 0.000000e+00 680.0
9 TraesCS7A01G367900 chr7B 83.363 571 57 20 785 1332 481071725 481071170 1.040000e-135 494.0
10 TraesCS7A01G367900 chr7B 85.000 220 10 6 116 333 481072257 481072059 7.090000e-48 202.0
11 TraesCS7A01G367900 chr1D 93.846 65 4 0 3484 3548 18989184 18989248 9.570000e-17 99.0
12 TraesCS7A01G367900 chr1D 97.959 49 1 0 3504 3552 10183744 10183792 7.450000e-13 86.1
13 TraesCS7A01G367900 chr1D 95.918 49 2 0 3504 3552 487892706 487892658 3.470000e-11 80.5
14 TraesCS7A01G367900 chr3B 89.189 74 3 1 3484 3552 745473410 745473337 2.070000e-13 87.9
15 TraesCS7A01G367900 chr1A 96.078 51 2 0 3506 3556 96040592 96040642 2.680000e-12 84.2
16 TraesCS7A01G367900 chr1A 96.078 51 2 0 3506 3556 96040750 96040800 2.680000e-12 84.2
17 TraesCS7A01G367900 chr3D 89.062 64 7 0 3483 3546 567408737 567408800 3.470000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G367900 chr7A 540949950 540954132 4182 False 3530.50 6444 100.00000 1 4183 2 chr7A.!!$F1 4182
1 TraesCS7A01G367900 chr7D 459078321 459082041 3720 True 1017.25 2519 85.71075 116 4183 4 chr7D.!!$R1 4067
2 TraesCS7A01G367900 chr7B 481068084 481072257 4173 True 967.75 2495 87.20600 116 4096 4 chr7B.!!$R1 3980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 164 0.035152 GGCCCAGATCACATCACACA 60.035 55.0 0.00 0.00 0.00 3.72 F
1918 2445 0.036022 AACTTGCACTGAGGCCTCTC 59.964 55.0 32.28 18.57 40.36 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 2670 0.033405 TCCTAGACCGAACCCCTGAG 60.033 60.0 0.0 0.0 0.00 3.35 R
3747 4352 0.179073 CCGACATCCATGTGACCTCC 60.179 60.0 0.0 0.0 41.95 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.884900 CGGAGTAAAACCGGCAGG 58.115 61.111 0.00 0.00 45.65 4.85
24 25 1.294138 CGGAGTAAAACCGGCAGGA 59.706 57.895 10.86 0.00 45.65 3.86
25 26 0.320946 CGGAGTAAAACCGGCAGGAA 60.321 55.000 10.86 0.00 45.65 3.36
26 27 1.878948 CGGAGTAAAACCGGCAGGAAA 60.879 52.381 10.86 0.00 45.65 3.13
27 28 2.232399 GGAGTAAAACCGGCAGGAAAA 58.768 47.619 10.86 0.00 41.02 2.29
28 29 2.030540 GGAGTAAAACCGGCAGGAAAAC 60.031 50.000 10.86 2.17 41.02 2.43
29 30 2.619646 GAGTAAAACCGGCAGGAAAACA 59.380 45.455 10.86 0.00 41.02 2.83
30 31 2.621526 AGTAAAACCGGCAGGAAAACAG 59.378 45.455 10.86 0.00 41.02 3.16
31 32 0.750249 AAAACCGGCAGGAAAACAGG 59.250 50.000 10.86 0.00 41.02 4.00
32 33 0.106419 AAACCGGCAGGAAAACAGGA 60.106 50.000 10.86 0.00 41.02 3.86
33 34 0.106419 AACCGGCAGGAAAACAGGAA 60.106 50.000 10.86 0.00 41.02 3.36
34 35 0.106419 ACCGGCAGGAAAACAGGAAA 60.106 50.000 10.86 0.00 41.02 3.13
35 36 1.256812 CCGGCAGGAAAACAGGAAAT 58.743 50.000 0.00 0.00 41.02 2.17
36 37 1.067635 CCGGCAGGAAAACAGGAAATG 60.068 52.381 0.00 0.00 41.02 2.32
37 38 1.613437 CGGCAGGAAAACAGGAAATGT 59.387 47.619 0.00 0.00 46.97 2.71
38 39 2.817258 CGGCAGGAAAACAGGAAATGTA 59.183 45.455 0.00 0.00 43.00 2.29
39 40 3.254657 CGGCAGGAAAACAGGAAATGTAA 59.745 43.478 0.00 0.00 43.00 2.41
40 41 4.261825 CGGCAGGAAAACAGGAAATGTAAA 60.262 41.667 0.00 0.00 43.00 2.01
41 42 5.230182 GGCAGGAAAACAGGAAATGTAAAG 58.770 41.667 0.00 0.00 43.00 1.85
42 43 5.230182 GCAGGAAAACAGGAAATGTAAAGG 58.770 41.667 0.00 0.00 43.00 3.11
43 44 5.010617 GCAGGAAAACAGGAAATGTAAAGGA 59.989 40.000 0.00 0.00 43.00 3.36
44 45 6.462347 GCAGGAAAACAGGAAATGTAAAGGAA 60.462 38.462 0.00 0.00 43.00 3.36
45 46 7.496747 CAGGAAAACAGGAAATGTAAAGGAAA 58.503 34.615 0.00 0.00 43.00 3.13
46 47 7.984617 CAGGAAAACAGGAAATGTAAAGGAAAA 59.015 33.333 0.00 0.00 43.00 2.29
47 48 8.544622 AGGAAAACAGGAAATGTAAAGGAAAAA 58.455 29.630 0.00 0.00 43.00 1.94
64 65 2.281539 AAAAATCCCGTCGGAAGGTT 57.718 45.000 14.39 0.00 43.10 3.50
65 66 2.281539 AAAATCCCGTCGGAAGGTTT 57.718 45.000 14.39 2.63 43.10 3.27
66 67 1.817357 AAATCCCGTCGGAAGGTTTC 58.183 50.000 14.39 0.00 43.10 2.78
67 68 0.981943 AATCCCGTCGGAAGGTTTCT 59.018 50.000 14.39 0.00 43.10 2.52
68 69 0.535797 ATCCCGTCGGAAGGTTTCTC 59.464 55.000 14.39 0.00 43.10 2.87
69 70 1.445582 CCCGTCGGAAGGTTTCTCG 60.446 63.158 14.39 0.00 0.00 4.04
70 71 1.445582 CCGTCGGAAGGTTTCTCGG 60.446 63.158 4.91 0.00 34.50 4.63
71 72 1.582968 CGTCGGAAGGTTTCTCGGA 59.417 57.895 0.00 0.00 0.00 4.55
72 73 0.731855 CGTCGGAAGGTTTCTCGGAC 60.732 60.000 0.00 0.00 0.00 4.79
73 74 0.389556 GTCGGAAGGTTTCTCGGACC 60.390 60.000 0.00 0.00 37.44 4.46
74 75 0.828762 TCGGAAGGTTTCTCGGACCA 60.829 55.000 0.00 0.00 39.71 4.02
75 76 0.389948 CGGAAGGTTTCTCGGACCAG 60.390 60.000 0.00 0.00 39.71 4.00
76 77 0.036294 GGAAGGTTTCTCGGACCAGG 60.036 60.000 0.00 0.00 39.71 4.45
77 78 0.974383 GAAGGTTTCTCGGACCAGGA 59.026 55.000 0.00 0.00 39.71 3.86
78 79 0.977395 AAGGTTTCTCGGACCAGGAG 59.023 55.000 0.00 0.00 39.71 3.69
79 80 0.114560 AGGTTTCTCGGACCAGGAGA 59.885 55.000 0.00 0.00 39.71 3.71
80 81 0.246910 GGTTTCTCGGACCAGGAGAC 59.753 60.000 0.00 0.00 40.09 3.36
81 82 0.109226 GTTTCTCGGACCAGGAGACG 60.109 60.000 0.00 0.00 40.09 4.18
82 83 1.874345 TTTCTCGGACCAGGAGACGC 61.874 60.000 0.00 0.00 40.09 5.19
83 84 3.062466 CTCGGACCAGGAGACGCA 61.062 66.667 0.00 0.00 33.27 5.24
84 85 2.599281 TCGGACCAGGAGACGCAA 60.599 61.111 0.00 0.00 0.00 4.85
85 86 1.949847 CTCGGACCAGGAGACGCAAT 61.950 60.000 0.00 0.00 33.27 3.56
86 87 1.519455 CGGACCAGGAGACGCAATC 60.519 63.158 0.00 0.00 0.00 2.67
87 88 1.901085 GGACCAGGAGACGCAATCT 59.099 57.895 0.00 0.00 41.91 2.40
88 89 0.460987 GGACCAGGAGACGCAATCTG 60.461 60.000 0.00 0.00 38.00 2.90
89 90 1.078848 ACCAGGAGACGCAATCTGC 60.079 57.895 0.00 0.00 45.93 4.26
90 91 1.817099 CCAGGAGACGCAATCTGCC 60.817 63.158 3.21 0.63 46.75 4.85
91 92 1.817099 CAGGAGACGCAATCTGCCC 60.817 63.158 3.21 0.00 46.75 5.36
92 93 2.892425 GGAGACGCAATCTGCCCG 60.892 66.667 0.00 0.00 41.12 6.13
93 94 3.567797 GAGACGCAATCTGCCCGC 61.568 66.667 0.00 0.00 41.12 6.13
94 95 4.087892 AGACGCAATCTGCCCGCT 62.088 61.111 0.00 0.00 41.12 5.52
95 96 3.869272 GACGCAATCTGCCCGCTG 61.869 66.667 0.00 0.00 41.12 5.18
96 97 4.704833 ACGCAATCTGCCCGCTGT 62.705 61.111 0.00 0.00 41.12 4.40
97 98 3.869272 CGCAATCTGCCCGCTGTC 61.869 66.667 0.00 0.00 41.12 3.51
98 99 3.512516 GCAATCTGCCCGCTGTCC 61.513 66.667 0.00 0.00 37.42 4.02
99 100 3.197790 CAATCTGCCCGCTGTCCG 61.198 66.667 0.00 0.00 0.00 4.79
100 101 3.706373 AATCTGCCCGCTGTCCGT 61.706 61.111 0.00 0.00 34.38 4.69
101 102 2.355986 AATCTGCCCGCTGTCCGTA 61.356 57.895 0.00 0.00 34.38 4.02
102 103 2.573609 AATCTGCCCGCTGTCCGTAC 62.574 60.000 0.00 0.00 34.38 3.67
103 104 4.063967 CTGCCCGCTGTCCGTACA 62.064 66.667 0.00 0.00 34.38 2.90
104 105 3.371097 CTGCCCGCTGTCCGTACAT 62.371 63.158 0.00 0.00 34.37 2.29
105 106 2.890474 GCCCGCTGTCCGTACATG 60.890 66.667 0.00 0.00 34.37 3.21
106 107 2.202878 CCCGCTGTCCGTACATGG 60.203 66.667 0.00 0.00 34.37 3.66
107 108 2.202878 CCGCTGTCCGTACATGGG 60.203 66.667 0.00 0.00 34.37 4.00
108 109 2.890474 CGCTGTCCGTACATGGGC 60.890 66.667 0.00 0.00 34.37 5.36
109 110 2.513897 GCTGTCCGTACATGGGCC 60.514 66.667 0.00 0.00 34.37 5.80
110 111 2.202878 CTGTCCGTACATGGGCCG 60.203 66.667 0.00 0.00 34.37 6.13
111 112 3.733344 CTGTCCGTACATGGGCCGG 62.733 68.421 12.21 12.21 43.03 6.13
141 142 4.683334 GCCAGACCGCGCAACAAC 62.683 66.667 8.75 0.00 0.00 3.32
157 160 0.392863 CAACGGCCCAGATCACATCA 60.393 55.000 0.00 0.00 0.00 3.07
159 162 1.221566 CGGCCCAGATCACATCACA 59.778 57.895 0.00 0.00 0.00 3.58
160 163 1.091771 CGGCCCAGATCACATCACAC 61.092 60.000 0.00 0.00 0.00 3.82
161 164 0.035152 GGCCCAGATCACATCACACA 60.035 55.000 0.00 0.00 0.00 3.72
162 165 1.614051 GGCCCAGATCACATCACACAA 60.614 52.381 0.00 0.00 0.00 3.33
163 166 2.161855 GCCCAGATCACATCACACAAA 58.838 47.619 0.00 0.00 0.00 2.83
167 170 4.520111 CCCAGATCACATCACACAAAAGAA 59.480 41.667 0.00 0.00 0.00 2.52
176 179 7.014702 CACATCACACAAAAGAAAAACCAAAC 58.985 34.615 0.00 0.00 0.00 2.93
234 237 2.594592 GCCCACCACTTCAACGCT 60.595 61.111 0.00 0.00 0.00 5.07
237 240 1.821216 CCCACCACTTCAACGCTATT 58.179 50.000 0.00 0.00 0.00 1.73
238 241 1.737793 CCCACCACTTCAACGCTATTC 59.262 52.381 0.00 0.00 0.00 1.75
239 242 2.422597 CCACCACTTCAACGCTATTCA 58.577 47.619 0.00 0.00 0.00 2.57
240 243 2.159627 CCACCACTTCAACGCTATTCAC 59.840 50.000 0.00 0.00 0.00 3.18
241 244 3.067106 CACCACTTCAACGCTATTCACT 58.933 45.455 0.00 0.00 0.00 3.41
242 245 3.123621 CACCACTTCAACGCTATTCACTC 59.876 47.826 0.00 0.00 0.00 3.51
243 246 3.244078 ACCACTTCAACGCTATTCACTCA 60.244 43.478 0.00 0.00 0.00 3.41
244 247 3.123621 CCACTTCAACGCTATTCACTCAC 59.876 47.826 0.00 0.00 0.00 3.51
267 270 1.136774 GCGCCCCAGTTCGAAATTC 59.863 57.895 0.00 0.00 0.00 2.17
823 990 3.393800 CAGGCCAACGTTATCATAGGAG 58.606 50.000 5.01 0.00 0.00 3.69
824 991 3.069586 CAGGCCAACGTTATCATAGGAGA 59.930 47.826 5.01 0.00 0.00 3.71
826 993 3.060602 GCCAACGTTATCATAGGAGAGC 58.939 50.000 0.00 0.00 0.00 4.09
872 1039 0.325390 AAAACCGAACCCAAACCCCA 60.325 50.000 0.00 0.00 0.00 4.96
873 1040 0.105401 AAACCGAACCCAAACCCCAT 60.105 50.000 0.00 0.00 0.00 4.00
879 1048 4.457181 CCCAAACCCCATCCCCCG 62.457 72.222 0.00 0.00 0.00 5.73
912 1084 1.819632 CGAAGGCTTCCATTCCCCG 60.820 63.158 20.97 4.03 0.00 5.73
930 1102 1.349259 CGTCGCCGGTTTCGAATTCT 61.349 55.000 1.90 0.00 37.73 2.40
931 1103 0.794473 GTCGCCGGTTTCGAATTCTT 59.206 50.000 1.90 0.00 37.73 2.52
932 1104 1.196127 GTCGCCGGTTTCGAATTCTTT 59.804 47.619 1.90 0.00 37.73 2.52
933 1105 1.195900 TCGCCGGTTTCGAATTCTTTG 59.804 47.619 1.90 0.00 39.00 2.77
934 1106 1.727857 CGCCGGTTTCGAATTCTTTGG 60.728 52.381 1.90 0.00 39.00 3.28
935 1107 1.538075 GCCGGTTTCGAATTCTTTGGA 59.462 47.619 1.90 0.00 39.00 3.53
936 1108 2.414161 GCCGGTTTCGAATTCTTTGGAG 60.414 50.000 1.90 0.00 39.00 3.86
937 1109 2.161609 CCGGTTTCGAATTCTTTGGAGG 59.838 50.000 0.00 0.00 39.00 4.30
938 1110 2.414161 CGGTTTCGAATTCTTTGGAGGC 60.414 50.000 0.00 0.00 39.00 4.70
939 1111 2.094700 GGTTTCGAATTCTTTGGAGGCC 60.095 50.000 0.00 0.00 0.00 5.19
940 1112 2.556622 GTTTCGAATTCTTTGGAGGCCA 59.443 45.455 5.01 0.00 0.00 5.36
941 1113 2.113860 TCGAATTCTTTGGAGGCCAG 57.886 50.000 5.01 0.00 33.81 4.85
942 1114 1.098050 CGAATTCTTTGGAGGCCAGG 58.902 55.000 5.01 0.00 33.81 4.45
943 1115 1.478631 GAATTCTTTGGAGGCCAGGG 58.521 55.000 5.01 0.00 33.81 4.45
944 1116 0.786435 AATTCTTTGGAGGCCAGGGT 59.214 50.000 5.01 0.00 33.81 4.34
945 1117 0.786435 ATTCTTTGGAGGCCAGGGTT 59.214 50.000 5.01 0.00 33.81 4.11
946 1118 0.178964 TTCTTTGGAGGCCAGGGTTG 60.179 55.000 5.01 0.00 33.81 3.77
948 1120 3.159104 TTTGGAGGCCAGGGTTGGG 62.159 63.158 5.01 0.00 45.16 4.12
951 1123 3.023735 GAGGCCAGGGTTGGGGAT 61.024 66.667 5.01 0.00 45.16 3.85
953 1125 2.042944 GGCCAGGGTTGGGGATTC 60.043 66.667 0.00 0.00 45.16 2.52
955 1127 3.087065 CCAGGGTTGGGGATTCGT 58.913 61.111 0.00 0.00 41.05 3.85
964 1144 1.367840 GGGGATTCGTGGGAGATCG 59.632 63.158 0.00 0.00 0.00 3.69
965 1145 1.113517 GGGGATTCGTGGGAGATCGA 61.114 60.000 0.00 0.00 0.00 3.59
970 1150 1.100510 TTCGTGGGAGATCGAATCGT 58.899 50.000 1.52 0.00 40.34 3.73
971 1151 0.661552 TCGTGGGAGATCGAATCGTC 59.338 55.000 1.52 0.00 33.13 4.20
983 1167 4.501285 ATCGTCTCCTCGGGCGGA 62.501 66.667 0.00 0.00 0.00 5.54
986 1170 2.519780 GTCTCCTCGGGCGGATCT 60.520 66.667 0.00 0.00 31.43 2.75
1011 1195 2.592308 GAGTCCATGGCCACCTCC 59.408 66.667 8.16 0.00 0.00 4.30
1120 1318 3.017442 GGTTCTGATCTAGGGTTTTGGC 58.983 50.000 0.00 0.00 0.00 4.52
1123 1321 3.454858 TCTGATCTAGGGTTTTGGCTCT 58.545 45.455 0.00 0.00 0.00 4.09
1124 1322 3.452627 TCTGATCTAGGGTTTTGGCTCTC 59.547 47.826 0.00 0.00 0.00 3.20
1203 1410 4.388499 GGAAGTTGGAGCCGGCGA 62.388 66.667 23.20 6.22 0.00 5.54
1222 1429 3.902086 GGCGGACGCTCCTCCTAC 61.902 72.222 16.72 0.00 38.38 3.18
1225 1432 3.902086 GGACGCTCCTCCTACCGC 61.902 72.222 0.00 0.00 32.53 5.68
1263 1471 4.141551 GGTACCCCTTTTCGACCATCTTAT 60.142 45.833 0.00 0.00 0.00 1.73
1264 1472 4.586306 ACCCCTTTTCGACCATCTTATT 57.414 40.909 0.00 0.00 0.00 1.40
1273 1481 3.196039 TCGACCATCTTATTTCCCGTTCA 59.804 43.478 0.00 0.00 0.00 3.18
1277 1485 4.881850 ACCATCTTATTTCCCGTTCATGTC 59.118 41.667 0.00 0.00 0.00 3.06
1280 1488 3.521937 TCTTATTTCCCGTTCATGTCCCT 59.478 43.478 0.00 0.00 0.00 4.20
1326 1537 7.993183 TCCTACCTGATATGTGATTCCTTTTTC 59.007 37.037 0.00 0.00 0.00 2.29
1328 1539 9.401058 CTACCTGATATGTGATTCCTTTTTCTT 57.599 33.333 0.00 0.00 0.00 2.52
1330 1541 9.753674 ACCTGATATGTGATTCCTTTTTCTTAA 57.246 29.630 0.00 0.00 0.00 1.85
1368 1584 7.486802 TTAAAAACCAGGAGTAGTTCTTTCG 57.513 36.000 0.00 0.00 0.00 3.46
1369 1585 2.745515 ACCAGGAGTAGTTCTTTCGC 57.254 50.000 0.00 0.00 0.00 4.70
1383 1600 8.968242 GTAGTTCTTTCGCTTTCAATTTTCAAT 58.032 29.630 0.00 0.00 0.00 2.57
1387 1604 8.864069 TCTTTCGCTTTCAATTTTCAATTACA 57.136 26.923 0.00 0.00 0.00 2.41
1388 1605 9.307121 TCTTTCGCTTTCAATTTTCAATTACAA 57.693 25.926 0.00 0.00 0.00 2.41
1389 1606 9.571804 CTTTCGCTTTCAATTTTCAATTACAAG 57.428 29.630 0.00 0.00 0.00 3.16
1390 1607 8.641499 TTCGCTTTCAATTTTCAATTACAAGT 57.359 26.923 0.00 0.00 0.00 3.16
1403 1620 6.692486 TCAATTACAAGTTCTCAGAGAGGAC 58.308 40.000 0.00 0.00 38.39 3.85
1405 1622 2.865079 ACAAGTTCTCAGAGAGGACGA 58.135 47.619 0.00 0.00 42.61 4.20
1406 1623 2.554893 ACAAGTTCTCAGAGAGGACGAC 59.445 50.000 0.00 0.00 42.61 4.34
1408 1625 2.432444 AGTTCTCAGAGAGGACGACAG 58.568 52.381 0.00 0.00 42.61 3.51
1409 1626 2.156098 GTTCTCAGAGAGGACGACAGT 58.844 52.381 0.00 0.00 27.75 3.55
1420 1637 1.865865 GACGACAGTCCACAACATGT 58.134 50.000 0.00 0.00 41.41 3.21
1421 1638 3.021269 GACGACAGTCCACAACATGTA 57.979 47.619 0.00 0.00 41.41 2.29
1422 1639 2.729882 GACGACAGTCCACAACATGTAC 59.270 50.000 0.00 0.00 41.41 2.90
1426 1800 4.243270 GACAGTCCACAACATGTACTACC 58.757 47.826 0.00 0.00 0.00 3.18
1449 1823 3.209410 AGCATGCCACTGTTTAGATAGC 58.791 45.455 15.66 0.00 0.00 2.97
1450 1824 2.032549 GCATGCCACTGTTTAGATAGCG 60.033 50.000 6.36 0.00 0.00 4.26
1451 1825 3.457234 CATGCCACTGTTTAGATAGCGA 58.543 45.455 0.00 0.00 0.00 4.93
1452 1826 3.165058 TGCCACTGTTTAGATAGCGAG 57.835 47.619 0.00 0.00 0.00 5.03
1453 1827 2.496070 TGCCACTGTTTAGATAGCGAGT 59.504 45.455 0.00 0.00 0.00 4.18
1456 1830 4.033014 GCCACTGTTTAGATAGCGAGTTTC 59.967 45.833 0.00 0.00 0.00 2.78
1458 1832 6.561614 CCACTGTTTAGATAGCGAGTTTCTA 58.438 40.000 0.00 0.00 0.00 2.10
1460 1834 7.380065 CCACTGTTTAGATAGCGAGTTTCTATC 59.620 40.741 0.00 0.00 41.53 2.08
1492 1866 1.648116 ACTGCCAAGGCCAATGATTT 58.352 45.000 5.01 0.00 41.09 2.17
1493 1867 1.551883 ACTGCCAAGGCCAATGATTTC 59.448 47.619 5.01 0.00 41.09 2.17
1494 1868 1.551430 CTGCCAAGGCCAATGATTTCA 59.449 47.619 5.01 0.00 41.09 2.69
1495 1869 2.169769 CTGCCAAGGCCAATGATTTCAT 59.830 45.455 5.01 0.00 41.09 2.57
1496 1870 2.093394 TGCCAAGGCCAATGATTTCATG 60.093 45.455 5.01 0.00 41.09 3.07
1497 1871 2.093341 GCCAAGGCCAATGATTTCATGT 60.093 45.455 5.01 0.00 34.09 3.21
1498 1872 3.620472 GCCAAGGCCAATGATTTCATGTT 60.620 43.478 5.01 0.00 34.09 2.71
1499 1873 4.581868 CCAAGGCCAATGATTTCATGTTT 58.418 39.130 5.01 0.00 36.56 2.83
1500 1874 5.005094 CCAAGGCCAATGATTTCATGTTTT 58.995 37.500 5.01 0.00 36.56 2.43
1501 1875 5.474189 CCAAGGCCAATGATTTCATGTTTTT 59.526 36.000 5.01 0.00 36.56 1.94
1541 1915 3.322211 ACGAATTGACCCGTCACATTA 57.678 42.857 0.00 0.00 39.66 1.90
1545 1919 5.292589 ACGAATTGACCCGTCACATTAATAC 59.707 40.000 0.00 0.00 39.66 1.89
1558 1933 7.224753 CGTCACATTAATACCTGCTAGACATTT 59.775 37.037 0.00 0.00 0.00 2.32
1559 1934 9.542462 GTCACATTAATACCTGCTAGACATTTA 57.458 33.333 0.00 0.00 0.00 1.40
1573 1948 9.265901 TGCTAGACATTTATCTTCTCAAATAGC 57.734 33.333 0.00 0.00 0.00 2.97
1574 1949 8.716909 GCTAGACATTTATCTTCTCAAATAGCC 58.283 37.037 0.00 0.00 0.00 3.93
1575 1950 9.770097 CTAGACATTTATCTTCTCAAATAGCCA 57.230 33.333 0.00 0.00 0.00 4.75
1596 1971 4.400251 CCATTGGATCTGCAAACTGTACAT 59.600 41.667 0.00 0.00 0.00 2.29
1607 1982 5.012251 TGCAAACTGTACATAACCAGACCTA 59.988 40.000 0.00 0.00 32.93 3.08
1609 1984 6.698380 CAAACTGTACATAACCAGACCTACT 58.302 40.000 0.00 0.00 32.93 2.57
1673 2196 5.936372 TGAAATCATCTCTTGTCCTGTGAAG 59.064 40.000 0.00 0.00 0.00 3.02
1694 2217 1.742308 TAGGAACAGGAAAGCCCAGT 58.258 50.000 0.00 0.00 36.05 4.00
1699 2222 1.742308 ACAGGAAAGCCCAGTAAGGA 58.258 50.000 0.00 0.00 41.22 3.36
1700 2223 1.351350 ACAGGAAAGCCCAGTAAGGAC 59.649 52.381 0.00 0.00 41.22 3.85
1707 2230 6.159751 AGGAAAGCCCAGTAAGGACATTAATA 59.840 38.462 0.00 0.00 41.22 0.98
1718 2241 2.143925 GACATTAATAGAGGCCCGTGC 58.856 52.381 0.00 0.00 0.00 5.34
1737 2260 1.884926 GCGCACAGATGTCCCTAGC 60.885 63.158 0.30 0.00 0.00 3.42
1748 2272 6.127196 ACAGATGTCCCTAGCTTTTTCTAGAG 60.127 42.308 0.00 0.00 38.61 2.43
1801 2328 3.911661 AACAATTCAGCAAGTCTCTGC 57.088 42.857 0.00 0.00 42.97 4.26
1847 2374 2.236766 GCTGATGCCCAGATTATTGCT 58.763 47.619 7.32 0.00 45.78 3.91
1865 2392 3.013276 GCTTCAAAACTAAGCACACCC 57.987 47.619 3.07 0.00 46.85 4.61
1882 2409 1.529226 CCCGTTTGGTGCTATGTCAA 58.471 50.000 0.00 0.00 0.00 3.18
1885 2412 2.518949 CGTTTGGTGCTATGTCAATGC 58.481 47.619 0.00 0.00 0.00 3.56
1900 2427 4.069300 TCAATGCAAAATTGACCAGCAA 57.931 36.364 0.00 0.00 41.53 3.91
1904 2431 3.196463 TGCAAAATTGACCAGCAACTTG 58.804 40.909 0.00 0.00 39.78 3.16
1917 2444 0.250640 CAACTTGCACTGAGGCCTCT 60.251 55.000 32.28 11.81 0.00 3.69
1918 2445 0.036022 AACTTGCACTGAGGCCTCTC 59.964 55.000 32.28 18.57 40.36 3.20
1926 2453 1.229209 TGAGGCCTCTCGGTTTCCT 60.229 57.895 32.28 0.00 42.79 3.36
1946 2473 3.989817 CCTACTTTGAAATTGCTGCCAAC 59.010 43.478 0.00 0.00 32.95 3.77
1950 2477 5.857268 ACTTTGAAATTGCTGCCAACTAAT 58.143 33.333 0.00 0.00 32.95 1.73
1954 2481 7.565323 TTGAAATTGCTGCCAACTAATTTTT 57.435 28.000 8.44 0.00 34.07 1.94
1999 2526 3.776969 TGCTCTCCATATATAGGGCCAAG 59.223 47.826 6.18 6.82 38.51 3.61
2155 2682 1.608717 CTCCAGTCTCAGGGGTTCGG 61.609 65.000 0.00 0.00 0.00 4.30
2158 2685 0.900647 CAGTCTCAGGGGTTCGGTCT 60.901 60.000 0.00 0.00 0.00 3.85
2200 2727 0.828022 GGTGTGATACCCCGACATCA 59.172 55.000 0.00 0.00 44.15 3.07
2215 2742 2.877168 GACATCAGAAGCATCCATGTCC 59.123 50.000 15.80 4.12 38.90 4.02
2218 2745 1.911357 TCAGAAGCATCCATGTCCACT 59.089 47.619 0.00 0.00 0.00 4.00
2248 2775 3.005897 GCAAGTTCAGTACACTCTCCTCA 59.994 47.826 0.00 0.00 0.00 3.86
2312 2839 3.974719 TCCAAGCACTCTATCTCTCTGT 58.025 45.455 0.00 0.00 0.00 3.41
2360 2888 5.294306 TCAGAATGCGAGGTAACATCAATTC 59.706 40.000 0.00 0.00 34.99 2.17
2370 2898 7.011763 CGAGGTAACATCAATTCATCATCTGTT 59.988 37.037 0.00 0.00 41.41 3.16
2619 3149 1.801178 GACAAGTCTGCTGTTAGTGCC 59.199 52.381 0.00 0.00 0.00 5.01
2652 3182 4.354087 ACTCCAAAGGGTAATCTGAAACCT 59.646 41.667 11.09 0.00 35.97 3.50
2718 3248 7.512992 AGAAAGAGAACATTCAGAAGGAGAAA 58.487 34.615 0.81 0.00 0.00 2.52
2749 3279 6.070251 TGCAAAGATCAGAGGTTCCTATAACA 60.070 38.462 0.00 0.00 0.00 2.41
2750 3280 6.823689 GCAAAGATCAGAGGTTCCTATAACAA 59.176 38.462 0.00 0.00 0.00 2.83
2796 3326 5.056480 GCAAAAGAAGGTGCCAAAAATACT 58.944 37.500 0.00 0.00 34.58 2.12
2865 3395 2.281484 GGCAGTGAGGTTTCGCCA 60.281 61.111 0.00 0.00 42.50 5.69
2871 3401 0.868406 GTGAGGTTTCGCCAGTTGAG 59.132 55.000 0.00 0.00 40.61 3.02
2897 3427 2.555199 CCAAGAATCTGGTAAGCTCCG 58.445 52.381 0.00 0.00 0.00 4.63
2901 3431 2.567615 AGAATCTGGTAAGCTCCGTTGT 59.432 45.455 0.00 0.00 0.00 3.32
2920 3450 6.128363 CCGTTGTTTTCCTGAGTTCCTAATAC 60.128 42.308 0.00 0.00 0.00 1.89
2921 3451 6.425721 CGTTGTTTTCCTGAGTTCCTAATACA 59.574 38.462 0.00 0.00 0.00 2.29
2950 3484 6.757897 TCACCTGTTTCTGCAATTTATAGG 57.242 37.500 0.00 0.00 0.00 2.57
3031 3565 7.764443 CGAAGATAAGGAGAACATGGTAAGAAA 59.236 37.037 0.00 0.00 0.00 2.52
3032 3566 8.794335 AAGATAAGGAGAACATGGTAAGAAAC 57.206 34.615 0.00 0.00 0.00 2.78
3033 3567 8.152023 AGATAAGGAGAACATGGTAAGAAACT 57.848 34.615 0.00 0.00 0.00 2.66
3034 3568 9.268282 AGATAAGGAGAACATGGTAAGAAACTA 57.732 33.333 0.00 0.00 0.00 2.24
3035 3569 9.315525 GATAAGGAGAACATGGTAAGAAACTAC 57.684 37.037 0.00 0.00 0.00 2.73
3036 3570 5.721232 AGGAGAACATGGTAAGAAACTACG 58.279 41.667 0.00 0.00 0.00 3.51
3037 3571 5.479375 AGGAGAACATGGTAAGAAACTACGA 59.521 40.000 0.00 0.00 0.00 3.43
3038 3572 6.014840 AGGAGAACATGGTAAGAAACTACGAA 60.015 38.462 0.00 0.00 0.00 3.85
3043 3577 7.972832 ACATGGTAAGAAACTACGAATTTCA 57.027 32.000 0.00 0.00 38.32 2.69
3054 3588 7.787725 AACTACGAATTTCAACTGTCTTCTT 57.212 32.000 0.00 0.00 0.00 2.52
3059 3593 5.916883 CGAATTTCAACTGTCTTCTTGCAAT 59.083 36.000 0.00 0.00 0.00 3.56
3066 3613 3.501445 ACTGTCTTCTTGCAATTGAGAGC 59.499 43.478 10.34 0.00 0.00 4.09
3073 3620 4.582869 TCTTGCAATTGAGAGCACACTAT 58.417 39.130 10.34 0.00 41.05 2.12
3079 3626 5.333952 GCAATTGAGAGCACACTATATCTGC 60.334 44.000 10.34 0.00 0.00 4.26
3082 3629 3.701040 TGAGAGCACACTATATCTGCACA 59.299 43.478 0.00 0.00 33.06 4.57
3088 3635 4.396166 GCACACTATATCTGCACAAGGTTT 59.604 41.667 0.00 0.00 0.00 3.27
3095 3642 3.781079 TCTGCACAAGGTTTCTGTTTG 57.219 42.857 0.00 0.00 0.00 2.93
3111 3662 4.338118 TCTGTTTGGTTCTTGCTTAACTGG 59.662 41.667 0.00 0.00 0.00 4.00
3117 3668 5.626142 TGGTTCTTGCTTAACTGGAACATA 58.374 37.500 0.00 0.00 38.20 2.29
3123 3674 7.282585 TCTTGCTTAACTGGAACATATATGCT 58.717 34.615 12.79 0.00 38.20 3.79
3176 3727 2.100631 CAACGCCGTAGCCCAAGAG 61.101 63.158 0.00 0.00 34.57 2.85
3186 3737 2.327325 AGCCCAAGAGGTCTAGAACA 57.673 50.000 11.14 0.00 38.26 3.18
3189 3740 2.769095 GCCCAAGAGGTCTAGAACAGAT 59.231 50.000 11.14 0.00 38.26 2.90
3280 3831 1.996898 TCGCCGTTGTTGATATGTCAC 59.003 47.619 0.00 0.00 33.11 3.67
3293 3844 7.093945 TGTTGATATGTCACTAGCACTTGTCTA 60.094 37.037 0.00 0.00 33.11 2.59
3306 3857 4.062293 CACTTGTCTATCCGGTTGTCAAA 58.938 43.478 0.00 0.00 0.00 2.69
3369 3921 2.493675 TGAGACTGCTCGCTTGTATTCT 59.506 45.455 0.00 0.00 44.33 2.40
3376 3928 4.065088 TGCTCGCTTGTATTCTCTTTGTT 58.935 39.130 0.00 0.00 0.00 2.83
3389 3941 5.751243 TCTCTTTGTTAAGTCAGTTTGCC 57.249 39.130 0.00 0.00 32.98 4.52
3439 3991 7.542025 AGCTGAATTCTTTATTTGTGTGATCC 58.458 34.615 7.05 0.00 0.00 3.36
3446 3998 4.666412 TTATTTGTGTGATCCCCCTTGA 57.334 40.909 0.00 0.00 0.00 3.02
3452 4004 0.620556 GTGATCCCCCTTGAGCAGAA 59.379 55.000 0.00 0.00 30.08 3.02
3477 4030 5.772825 TTCTCCCTGATTTTGTGTTCTTG 57.227 39.130 0.00 0.00 0.00 3.02
3489 4042 4.955811 TGTGTTCTTGTCATGTACTCCT 57.044 40.909 0.00 0.00 0.00 3.69
3495 4048 3.576982 TCTTGTCATGTACTCCTTCCGTT 59.423 43.478 0.00 0.00 0.00 4.44
3497 4050 2.232941 TGTCATGTACTCCTTCCGTTCC 59.767 50.000 0.00 0.00 0.00 3.62
3498 4051 2.232941 GTCATGTACTCCTTCCGTTCCA 59.767 50.000 0.00 0.00 0.00 3.53
3499 4052 3.104512 TCATGTACTCCTTCCGTTCCAT 58.895 45.455 0.00 0.00 0.00 3.41
3507 4060 6.309389 ACTCCTTCCGTTCCATATTACTTT 57.691 37.500 0.00 0.00 0.00 2.66
3508 4061 6.113411 ACTCCTTCCGTTCCATATTACTTTG 58.887 40.000 0.00 0.00 0.00 2.77
3509 4062 6.057321 TCCTTCCGTTCCATATTACTTTGT 57.943 37.500 0.00 0.00 0.00 2.83
3510 4063 7.093201 ACTCCTTCCGTTCCATATTACTTTGTA 60.093 37.037 0.00 0.00 0.00 2.41
3511 4064 7.043565 TCCTTCCGTTCCATATTACTTTGTAC 58.956 38.462 0.00 0.00 0.00 2.90
3512 4065 7.046033 CCTTCCGTTCCATATTACTTTGTACT 58.954 38.462 0.00 0.00 0.00 2.73
3529 4134 8.033038 ACTTTGTACTAAATCAGCGATGAGTAA 58.967 33.333 10.08 0.00 29.28 2.24
3533 4138 9.626045 TGTACTAAATCAGCGATGAGTAATATG 57.374 33.333 10.08 0.00 29.28 1.78
3534 4139 9.077674 GTACTAAATCAGCGATGAGTAATATGG 57.922 37.037 10.08 0.00 29.28 2.74
3535 4140 7.896811 ACTAAATCAGCGATGAGTAATATGGA 58.103 34.615 10.08 0.00 0.00 3.41
3537 4142 7.426929 AAATCAGCGATGAGTAATATGGAAC 57.573 36.000 10.08 0.00 0.00 3.62
3549 4154 4.891992 AATATGGAACGGAGGGAGTATG 57.108 45.455 0.00 0.00 0.00 2.39
3553 4158 4.458256 TGGAACGGAGGGAGTATGTATA 57.542 45.455 0.00 0.00 0.00 1.47
3554 4159 5.006896 TGGAACGGAGGGAGTATGTATAT 57.993 43.478 0.00 0.00 0.00 0.86
3555 4160 6.143551 TGGAACGGAGGGAGTATGTATATA 57.856 41.667 0.00 0.00 0.00 0.86
3557 4162 6.186234 GGAACGGAGGGAGTATGTATATAGT 58.814 44.000 0.00 0.00 0.00 2.12
3559 4164 7.997803 GGAACGGAGGGAGTATGTATATAGTAT 59.002 40.741 0.00 0.00 0.00 2.12
3591 4196 7.253883 GCAACTGCATGTTATAATTCTTCTTGC 60.254 37.037 0.00 0.00 41.59 4.01
3615 4220 3.355270 CGTGCTTAGTAGTCTGTGATCG 58.645 50.000 0.00 0.00 0.00 3.69
3631 4236 7.116090 GTCTGTGATCGGATCTTCAATTCTATG 59.884 40.741 18.16 5.48 0.00 2.23
3635 4240 5.022282 TCGGATCTTCAATTCTATGCACA 57.978 39.130 0.00 0.00 0.00 4.57
3638 4243 5.458891 GGATCTTCAATTCTATGCACATGC 58.541 41.667 0.00 0.00 42.50 4.06
3643 4248 0.949397 ATTCTATGCACATGCCTGCG 59.051 50.000 0.49 0.00 40.31 5.18
3644 4249 1.717791 TTCTATGCACATGCCTGCGC 61.718 55.000 0.00 0.00 40.31 6.09
3664 4269 3.045533 CGCTCTATGCTGCATCAGTGC 62.046 57.143 19.90 21.38 42.96 4.40
3683 4288 1.774639 CAGTACGTTTACTGCGTGGT 58.225 50.000 5.58 0.00 46.80 4.16
3684 4289 1.717645 CAGTACGTTTACTGCGTGGTC 59.282 52.381 5.58 0.00 46.80 4.02
3685 4290 1.337703 AGTACGTTTACTGCGTGGTCA 59.662 47.619 0.00 0.00 42.87 4.02
3722 4327 9.190317 GTTTATCCTTTCATTCTTGGATACCTT 57.810 33.333 0.00 0.00 40.14 3.50
3728 4333 7.013083 CCTTTCATTCTTGGATACCTTGATCTG 59.987 40.741 0.00 0.00 0.00 2.90
3747 4352 1.202348 TGTCACAGTATCCAGAGCACG 59.798 52.381 0.00 0.00 0.00 5.34
3764 4369 0.537188 ACGGAGGTCACATGGATGTC 59.463 55.000 0.00 0.00 39.39 3.06
3767 4372 0.537188 GAGGTCACATGGATGTCGGT 59.463 55.000 0.00 0.00 39.39 4.69
3772 4377 2.095263 GTCACATGGATGTCGGTTTTGG 60.095 50.000 0.00 0.00 39.39 3.28
3803 4408 6.639563 ACAACTTGTAAGCCACATTTCTTTT 58.360 32.000 0.00 0.00 36.90 2.27
3824 4429 7.927629 TCTTTTGCTCTGTAATCATTTTGCTTT 59.072 29.630 0.00 0.00 0.00 3.51
3853 4458 1.337118 TTTCCCATGGTCAAGTTGCC 58.663 50.000 11.73 3.73 0.00 4.52
3860 4465 3.131046 CCATGGTCAAGTTGCCTTTATCC 59.869 47.826 2.57 3.39 0.00 2.59
3905 4511 9.102757 TCTGCATTCTCTGTTCTATATTGTTTC 57.897 33.333 0.00 0.00 0.00 2.78
3990 4596 3.704566 AGATGCCATCACTTCATGCAATT 59.295 39.130 7.56 0.00 0.00 2.32
4000 4606 3.255725 CTTCATGCAATTCCAAATGCGT 58.744 40.909 0.00 0.00 45.47 5.24
4001 4607 3.316071 TCATGCAATTCCAAATGCGTT 57.684 38.095 0.00 0.00 45.47 4.84
4033 4639 0.388907 AATTGGTTGCAGCGTCATGC 60.389 50.000 0.00 2.93 46.68 4.06
4051 4659 3.775654 CCGAGAGACCCACAGGCC 61.776 72.222 0.00 0.00 36.11 5.19
4055 4663 4.416738 GAGACCCACAGGCCTGGC 62.417 72.222 35.42 18.60 36.11 4.85
4069 4677 2.559440 GCCTGGCAGAGAATAGACTTG 58.441 52.381 17.94 0.00 0.00 3.16
4103 4711 7.957002 ACATGATAGGAACACATAAGGTAGAG 58.043 38.462 0.00 0.00 0.00 2.43
4104 4712 7.785028 ACATGATAGGAACACATAAGGTAGAGA 59.215 37.037 0.00 0.00 0.00 3.10
4108 4716 9.352191 GATAGGAACACATAAGGTAGAGAACTA 57.648 37.037 0.00 0.00 0.00 2.24
4110 4718 8.431910 AGGAACACATAAGGTAGAGAACTAAA 57.568 34.615 0.00 0.00 0.00 1.85
4160 4768 6.645790 AACTAAATACGATCGTATCTGGGT 57.354 37.500 34.14 22.74 40.08 4.51
4161 4769 6.010294 ACTAAATACGATCGTATCTGGGTG 57.990 41.667 34.14 23.17 40.08 4.61
4162 4770 3.299340 AATACGATCGTATCTGGGTGC 57.701 47.619 34.14 0.00 40.08 5.01
4165 4776 1.067416 GATCGTATCTGGGTGCGCA 59.933 57.895 5.66 5.66 0.00 6.09
4179 4790 1.008538 GCGCACACCTGGTTTTGAG 60.009 57.895 0.30 6.92 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.320946 TTCCTGCCGGTTTTACTCCG 60.321 55.000 1.90 0.00 46.49 4.63
7 8 1.900245 TTTCCTGCCGGTTTTACTCC 58.100 50.000 1.90 0.00 0.00 3.85
8 9 2.619646 TGTTTTCCTGCCGGTTTTACTC 59.380 45.455 1.90 0.00 0.00 2.59
9 10 2.621526 CTGTTTTCCTGCCGGTTTTACT 59.378 45.455 1.90 0.00 0.00 2.24
10 11 2.287970 CCTGTTTTCCTGCCGGTTTTAC 60.288 50.000 1.90 0.00 0.00 2.01
11 12 1.957877 CCTGTTTTCCTGCCGGTTTTA 59.042 47.619 1.90 0.00 0.00 1.52
12 13 0.750249 CCTGTTTTCCTGCCGGTTTT 59.250 50.000 1.90 0.00 0.00 2.43
13 14 0.106419 TCCTGTTTTCCTGCCGGTTT 60.106 50.000 1.90 0.00 0.00 3.27
14 15 0.106419 TTCCTGTTTTCCTGCCGGTT 60.106 50.000 1.90 0.00 0.00 4.44
15 16 0.106419 TTTCCTGTTTTCCTGCCGGT 60.106 50.000 1.90 0.00 0.00 5.28
16 17 1.067635 CATTTCCTGTTTTCCTGCCGG 60.068 52.381 0.00 0.00 0.00 6.13
17 18 1.613437 ACATTTCCTGTTTTCCTGCCG 59.387 47.619 0.00 0.00 32.90 5.69
18 19 4.864704 TTACATTTCCTGTTTTCCTGCC 57.135 40.909 0.00 0.00 39.39 4.85
19 20 5.010617 TCCTTTACATTTCCTGTTTTCCTGC 59.989 40.000 0.00 0.00 39.39 4.85
20 21 6.648879 TCCTTTACATTTCCTGTTTTCCTG 57.351 37.500 0.00 0.00 39.39 3.86
21 22 7.669089 TTTCCTTTACATTTCCTGTTTTCCT 57.331 32.000 0.00 0.00 39.39 3.36
22 23 8.725405 TTTTTCCTTTACATTTCCTGTTTTCC 57.275 30.769 0.00 0.00 39.39 3.13
45 46 2.281539 AACCTTCCGACGGGATTTTT 57.718 45.000 15.25 0.00 43.41 1.94
46 47 2.156917 GAAACCTTCCGACGGGATTTT 58.843 47.619 15.25 7.83 43.41 1.82
47 48 1.350019 AGAAACCTTCCGACGGGATTT 59.650 47.619 15.25 3.45 43.41 2.17
48 49 0.981943 AGAAACCTTCCGACGGGATT 59.018 50.000 15.25 0.00 43.41 3.01
49 50 0.535797 GAGAAACCTTCCGACGGGAT 59.464 55.000 15.25 0.00 43.41 3.85
50 51 1.870055 CGAGAAACCTTCCGACGGGA 61.870 60.000 15.25 3.72 41.83 5.14
51 52 1.445582 CGAGAAACCTTCCGACGGG 60.446 63.158 15.25 0.00 0.00 5.28
52 53 1.445582 CCGAGAAACCTTCCGACGG 60.446 63.158 7.84 7.84 36.00 4.79
53 54 0.731855 GTCCGAGAAACCTTCCGACG 60.732 60.000 0.00 0.00 0.00 5.12
54 55 0.389556 GGTCCGAGAAACCTTCCGAC 60.390 60.000 0.00 0.00 33.78 4.79
55 56 0.828762 TGGTCCGAGAAACCTTCCGA 60.829 55.000 0.00 0.00 37.69 4.55
56 57 0.389948 CTGGTCCGAGAAACCTTCCG 60.390 60.000 0.00 0.00 37.69 4.30
57 58 0.036294 CCTGGTCCGAGAAACCTTCC 60.036 60.000 0.00 0.00 37.69 3.46
58 59 0.974383 TCCTGGTCCGAGAAACCTTC 59.026 55.000 0.00 0.00 37.69 3.46
59 60 0.977395 CTCCTGGTCCGAGAAACCTT 59.023 55.000 0.00 0.00 37.69 3.50
60 61 0.114560 TCTCCTGGTCCGAGAAACCT 59.885 55.000 0.00 0.00 37.69 3.50
61 62 0.246910 GTCTCCTGGTCCGAGAAACC 59.753 60.000 0.00 0.00 38.09 3.27
62 63 0.109226 CGTCTCCTGGTCCGAGAAAC 60.109 60.000 0.00 0.00 38.09 2.78
63 64 1.874345 GCGTCTCCTGGTCCGAGAAA 61.874 60.000 0.00 0.00 38.09 2.52
64 65 2.341101 GCGTCTCCTGGTCCGAGAA 61.341 63.158 0.00 0.00 38.09 2.87
65 66 2.750637 GCGTCTCCTGGTCCGAGA 60.751 66.667 0.00 0.00 33.97 4.04
66 67 1.949847 ATTGCGTCTCCTGGTCCGAG 61.950 60.000 0.00 0.00 0.00 4.63
67 68 1.945354 GATTGCGTCTCCTGGTCCGA 61.945 60.000 0.00 0.00 0.00 4.55
68 69 1.519455 GATTGCGTCTCCTGGTCCG 60.519 63.158 0.00 0.00 0.00 4.79
69 70 0.460987 CAGATTGCGTCTCCTGGTCC 60.461 60.000 0.00 0.00 34.00 4.46
70 71 1.086634 GCAGATTGCGTCTCCTGGTC 61.087 60.000 0.00 0.00 34.00 4.02
71 72 1.078848 GCAGATTGCGTCTCCTGGT 60.079 57.895 0.00 0.00 34.00 4.00
72 73 1.817099 GGCAGATTGCGTCTCCTGG 60.817 63.158 0.00 0.00 46.21 4.45
73 74 1.817099 GGGCAGATTGCGTCTCCTG 60.817 63.158 0.00 0.00 46.21 3.86
74 75 2.586792 GGGCAGATTGCGTCTCCT 59.413 61.111 0.00 0.00 46.21 3.69
75 76 2.892425 CGGGCAGATTGCGTCTCC 60.892 66.667 0.00 0.00 46.21 3.71
76 77 3.567797 GCGGGCAGATTGCGTCTC 61.568 66.667 0.00 0.00 46.21 3.36
77 78 4.087892 AGCGGGCAGATTGCGTCT 62.088 61.111 0.00 0.00 46.21 4.18
78 79 3.869272 CAGCGGGCAGATTGCGTC 61.869 66.667 0.00 0.00 46.21 5.19
79 80 4.704833 ACAGCGGGCAGATTGCGT 62.705 61.111 0.00 0.00 46.21 5.24
80 81 3.869272 GACAGCGGGCAGATTGCG 61.869 66.667 0.00 0.00 46.21 4.85
81 82 3.512516 GGACAGCGGGCAGATTGC 61.513 66.667 0.00 0.00 44.08 3.56
82 83 2.572095 TACGGACAGCGGGCAGATTG 62.572 60.000 0.00 0.00 0.00 2.67
83 84 2.355986 TACGGACAGCGGGCAGATT 61.356 57.895 0.00 0.00 0.00 2.40
84 85 2.758327 TACGGACAGCGGGCAGAT 60.758 61.111 0.00 0.00 0.00 2.90
85 86 3.755628 GTACGGACAGCGGGCAGA 61.756 66.667 0.00 0.00 0.00 4.26
86 87 3.371097 ATGTACGGACAGCGGGCAG 62.371 63.158 6.62 0.00 39.50 4.85
87 88 3.387091 ATGTACGGACAGCGGGCA 61.387 61.111 6.62 0.00 39.50 5.36
88 89 2.890474 CATGTACGGACAGCGGGC 60.890 66.667 6.62 0.00 39.50 6.13
89 90 2.202878 CCATGTACGGACAGCGGG 60.203 66.667 6.62 3.89 39.50 6.13
90 91 2.202878 CCCATGTACGGACAGCGG 60.203 66.667 6.62 9.44 39.50 5.52
91 92 2.890474 GCCCATGTACGGACAGCG 60.890 66.667 6.62 0.00 39.50 5.18
92 93 2.513897 GGCCCATGTACGGACAGC 60.514 66.667 6.62 3.99 39.50 4.40
93 94 2.202878 CGGCCCATGTACGGACAG 60.203 66.667 6.62 0.00 39.50 3.51
98 99 2.668185 TATTGGCCGGCCCATGTACG 62.668 60.000 41.75 0.00 44.89 3.67
99 100 0.251165 ATATTGGCCGGCCCATGTAC 60.251 55.000 41.75 16.63 44.89 2.90
100 101 0.251121 CATATTGGCCGGCCCATGTA 60.251 55.000 41.75 27.03 44.89 2.29
101 102 1.531365 CATATTGGCCGGCCCATGT 60.531 57.895 41.75 31.26 44.89 3.21
102 103 2.934570 GCATATTGGCCGGCCCATG 61.935 63.158 41.75 36.03 44.89 3.66
103 104 2.601367 GCATATTGGCCGGCCCAT 60.601 61.111 41.75 36.83 44.89 4.00
104 105 4.912395 GGCATATTGGCCGGCCCA 62.912 66.667 41.75 33.21 45.40 5.36
111 112 1.152694 TCTGGCCTGGCATATTGGC 60.153 57.895 22.05 6.93 45.42 4.52
112 113 0.825010 GGTCTGGCCTGGCATATTGG 60.825 60.000 22.05 3.44 0.00 3.16
113 114 1.168407 CGGTCTGGCCTGGCATATTG 61.168 60.000 22.05 5.22 34.25 1.90
114 115 1.149174 CGGTCTGGCCTGGCATATT 59.851 57.895 22.05 0.00 34.25 1.28
141 142 1.091771 GTGTGATGTGATCTGGGCCG 61.092 60.000 0.00 0.00 0.00 6.13
157 160 4.687018 GTCCGTTTGGTTTTTCTTTTGTGT 59.313 37.500 0.00 0.00 36.30 3.72
159 162 4.247258 GGTCCGTTTGGTTTTTCTTTTGT 58.753 39.130 0.00 0.00 36.30 2.83
160 163 3.619483 GGGTCCGTTTGGTTTTTCTTTTG 59.381 43.478 0.00 0.00 36.30 2.44
161 164 3.369681 GGGGTCCGTTTGGTTTTTCTTTT 60.370 43.478 0.00 0.00 36.30 2.27
162 165 2.168936 GGGGTCCGTTTGGTTTTTCTTT 59.831 45.455 0.00 0.00 36.30 2.52
163 166 1.758280 GGGGTCCGTTTGGTTTTTCTT 59.242 47.619 0.00 0.00 36.30 2.52
167 170 1.385756 CGTGGGGTCCGTTTGGTTTT 61.386 55.000 0.00 0.00 36.30 2.43
234 237 0.457853 GGCGCGTGAGTGAGTGAATA 60.458 55.000 8.43 0.00 46.66 1.75
237 240 4.357947 GGGCGCGTGAGTGAGTGA 62.358 66.667 8.43 0.00 46.66 3.41
242 245 4.988598 AACTGGGGCGCGTGAGTG 62.989 66.667 8.43 0.00 46.39 3.51
243 246 4.681978 GAACTGGGGCGCGTGAGT 62.682 66.667 8.43 0.00 0.00 3.41
824 991 1.341531 AGGAGCGCGTGATAAATAGCT 59.658 47.619 8.43 0.00 37.69 3.32
826 993 2.731976 GGAAGGAGCGCGTGATAAATAG 59.268 50.000 8.43 0.00 0.00 1.73
834 1001 2.464459 GGAATGGAAGGAGCGCGTG 61.464 63.158 8.43 0.00 0.00 5.34
872 1039 0.186386 AGAATCGAGAGACGGGGGAT 59.814 55.000 0.00 0.00 46.97 3.85
873 1040 0.033405 AAGAATCGAGAGACGGGGGA 60.033 55.000 0.00 0.00 46.97 4.81
900 1072 2.513897 GGCGACGGGGAATGGAAG 60.514 66.667 0.00 0.00 0.00 3.46
912 1084 0.794473 AAGAATTCGAAACCGGCGAC 59.206 50.000 9.30 0.00 37.52 5.19
922 1094 1.340017 CCTGGCCTCCAAAGAATTCGA 60.340 52.381 3.32 0.00 30.80 3.71
924 1096 1.272704 ACCCTGGCCTCCAAAGAATTC 60.273 52.381 3.32 0.00 30.80 2.17
926 1098 0.786435 AACCCTGGCCTCCAAAGAAT 59.214 50.000 3.32 0.00 30.80 2.40
930 1102 2.525592 CCAACCCTGGCCTCCAAA 59.474 61.111 3.32 0.00 35.39 3.28
931 1103 3.589542 CCCAACCCTGGCCTCCAA 61.590 66.667 3.32 0.00 41.99 3.53
934 1106 2.573893 GAATCCCCAACCCTGGCCTC 62.574 65.000 3.32 0.00 41.99 4.70
935 1107 2.537959 AATCCCCAACCCTGGCCT 60.538 61.111 3.32 0.00 41.99 5.19
936 1108 2.042944 GAATCCCCAACCCTGGCC 60.043 66.667 0.00 0.00 41.99 5.36
937 1109 2.440247 CGAATCCCCAACCCTGGC 60.440 66.667 0.00 0.00 41.99 4.85
938 1110 1.378514 CACGAATCCCCAACCCTGG 60.379 63.158 0.00 0.00 43.10 4.45
939 1111 1.378514 CCACGAATCCCCAACCCTG 60.379 63.158 0.00 0.00 0.00 4.45
940 1112 2.612493 CCCACGAATCCCCAACCCT 61.612 63.158 0.00 0.00 0.00 4.34
941 1113 2.044352 CCCACGAATCCCCAACCC 60.044 66.667 0.00 0.00 0.00 4.11
942 1114 1.077716 CTCCCACGAATCCCCAACC 60.078 63.158 0.00 0.00 0.00 3.77
943 1115 0.546598 ATCTCCCACGAATCCCCAAC 59.453 55.000 0.00 0.00 0.00 3.77
944 1116 0.837272 GATCTCCCACGAATCCCCAA 59.163 55.000 0.00 0.00 0.00 4.12
945 1117 1.399744 CGATCTCCCACGAATCCCCA 61.400 60.000 0.00 0.00 0.00 4.96
946 1118 1.113517 TCGATCTCCCACGAATCCCC 61.114 60.000 0.00 0.00 35.62 4.81
947 1119 0.750850 TTCGATCTCCCACGAATCCC 59.249 55.000 0.00 0.00 42.21 3.85
953 1125 0.663688 AGACGATTCGATCTCCCACG 59.336 55.000 13.95 0.00 0.00 4.94
964 1144 2.026301 CGCCCGAGGAGACGATTC 59.974 66.667 0.00 0.00 35.09 2.52
965 1145 3.528370 CCGCCCGAGGAGACGATT 61.528 66.667 0.00 0.00 35.09 3.34
970 1150 2.519541 CAGATCCGCCCGAGGAGA 60.520 66.667 0.00 0.00 44.55 3.71
971 1151 2.835431 ACAGATCCGCCCGAGGAG 60.835 66.667 0.00 0.00 44.55 3.69
983 1167 1.135139 CCATGGACTCGAACGACAGAT 59.865 52.381 5.56 0.00 0.00 2.90
986 1170 1.080093 GCCATGGACTCGAACGACA 60.080 57.895 18.40 0.00 0.00 4.35
1056 1241 2.355197 CAAAATCCCCCAAAAATCGCC 58.645 47.619 0.00 0.00 0.00 5.54
1057 1242 2.355197 CCAAAATCCCCCAAAAATCGC 58.645 47.619 0.00 0.00 0.00 4.58
1059 1244 3.561097 CCACCCAAAATCCCCCAAAAATC 60.561 47.826 0.00 0.00 0.00 2.17
1060 1245 2.378208 CCACCCAAAATCCCCCAAAAAT 59.622 45.455 0.00 0.00 0.00 1.82
1064 1254 0.116143 CTCCACCCAAAATCCCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
1066 1256 1.001631 CCTCCACCCAAAATCCCCC 59.998 63.158 0.00 0.00 0.00 5.40
1263 1471 1.979308 TGTAGGGACATGAACGGGAAA 59.021 47.619 0.00 0.00 0.00 3.13
1264 1472 1.646912 TGTAGGGACATGAACGGGAA 58.353 50.000 0.00 0.00 0.00 3.97
1297 1505 6.831976 AGGAATCACATATCAGGTAGGAAAC 58.168 40.000 0.00 0.00 0.00 2.78
1332 1543 9.197306 ACTCCTGGTTTTTAATAAGAAACAGTT 57.803 29.630 16.73 2.46 37.46 3.16
1333 1544 8.762481 ACTCCTGGTTTTTAATAAGAAACAGT 57.238 30.769 16.73 1.16 37.46 3.55
1335 1546 9.856162 ACTACTCCTGGTTTTTAATAAGAAACA 57.144 29.630 0.00 4.29 37.46 2.83
1344 1555 6.017687 GCGAAAGAACTACTCCTGGTTTTTAA 60.018 38.462 0.00 0.00 0.00 1.52
1345 1556 5.467735 GCGAAAGAACTACTCCTGGTTTTTA 59.532 40.000 0.00 0.00 0.00 1.52
1349 1560 2.633481 AGCGAAAGAACTACTCCTGGTT 59.367 45.455 0.00 0.00 0.00 3.67
1351 1562 3.320673 AAGCGAAAGAACTACTCCTGG 57.679 47.619 0.00 0.00 0.00 4.45
1355 1571 7.855904 TGAAAATTGAAAGCGAAAGAACTACTC 59.144 33.333 0.00 0.00 0.00 2.59
1357 1573 7.908193 TGAAAATTGAAAGCGAAAGAACTAC 57.092 32.000 0.00 0.00 0.00 2.73
1367 1583 8.755018 AGAACTTGTAATTGAAAATTGAAAGCG 58.245 29.630 0.00 0.00 0.00 4.68
1383 1600 4.215827 GTCGTCCTCTCTGAGAACTTGTAA 59.784 45.833 8.95 0.00 0.00 2.41
1387 1604 2.817258 CTGTCGTCCTCTCTGAGAACTT 59.183 50.000 8.95 0.00 0.00 2.66
1388 1605 2.224670 ACTGTCGTCCTCTCTGAGAACT 60.225 50.000 8.95 0.00 0.00 3.01
1389 1606 2.156098 ACTGTCGTCCTCTCTGAGAAC 58.844 52.381 8.95 4.24 0.00 3.01
1390 1607 2.428491 GACTGTCGTCCTCTCTGAGAA 58.572 52.381 8.95 0.00 33.98 2.87
1408 1625 4.081862 TGCTAGGTAGTACATGTTGTGGAC 60.082 45.833 2.30 0.00 42.40 4.02
1409 1626 4.090819 TGCTAGGTAGTACATGTTGTGGA 58.909 43.478 2.30 0.00 0.00 4.02
1411 1628 4.271049 GCATGCTAGGTAGTACATGTTGTG 59.729 45.833 11.37 0.00 41.51 3.33
1412 1629 4.442706 GCATGCTAGGTAGTACATGTTGT 58.557 43.478 11.37 0.00 41.51 3.32
1413 1630 3.809832 GGCATGCTAGGTAGTACATGTTG 59.190 47.826 18.92 0.00 41.51 3.33
1415 1632 3.038280 TGGCATGCTAGGTAGTACATGT 58.962 45.455 18.92 2.69 41.51 3.21
1416 1633 3.070159 AGTGGCATGCTAGGTAGTACATG 59.930 47.826 18.92 0.00 42.20 3.21
1418 1635 2.430694 CAGTGGCATGCTAGGTAGTACA 59.569 50.000 18.92 0.00 0.00 2.90
1419 1636 2.431057 ACAGTGGCATGCTAGGTAGTAC 59.569 50.000 18.92 0.00 0.00 2.73
1420 1637 2.747177 ACAGTGGCATGCTAGGTAGTA 58.253 47.619 18.92 0.00 0.00 1.82
1421 1638 1.573108 ACAGTGGCATGCTAGGTAGT 58.427 50.000 18.92 4.76 0.00 2.73
1422 1639 2.698855 AACAGTGGCATGCTAGGTAG 57.301 50.000 18.92 4.11 0.00 3.18
1426 1800 4.450419 GCTATCTAAACAGTGGCATGCTAG 59.550 45.833 18.92 9.48 0.00 3.42
1467 1841 0.476338 TTGGCCTTGGCAGTTCTACA 59.524 50.000 14.04 0.00 39.75 2.74
1474 1848 1.551430 TGAAATCATTGGCCTTGGCAG 59.449 47.619 14.04 0.60 39.75 4.85
1477 1851 3.899052 ACATGAAATCATTGGCCTTGG 57.101 42.857 3.32 0.00 33.61 3.61
1502 1876 9.619316 CAATTCGTCCATTGTAAATAGTCAAAA 57.381 29.630 0.00 0.00 30.60 2.44
1503 1877 9.004717 TCAATTCGTCCATTGTAAATAGTCAAA 57.995 29.630 5.17 0.00 35.86 2.69
1504 1878 8.447833 GTCAATTCGTCCATTGTAAATAGTCAA 58.552 33.333 5.17 0.00 35.86 3.18
1505 1879 7.065324 GGTCAATTCGTCCATTGTAAATAGTCA 59.935 37.037 5.17 0.00 35.86 3.41
1506 1880 7.407337 GGTCAATTCGTCCATTGTAAATAGTC 58.593 38.462 5.17 0.00 35.86 2.59
1507 1881 6.317893 GGGTCAATTCGTCCATTGTAAATAGT 59.682 38.462 5.17 0.00 35.86 2.12
1508 1882 6.511121 CGGGTCAATTCGTCCATTGTAAATAG 60.511 42.308 5.17 0.00 35.86 1.73
1522 1896 4.875544 ATTAATGTGACGGGTCAATTCG 57.124 40.909 2.58 0.00 41.85 3.34
1524 1898 5.588648 CAGGTATTAATGTGACGGGTCAATT 59.411 40.000 2.58 8.30 41.85 2.32
1541 1915 8.928448 TGAGAAGATAAATGTCTAGCAGGTATT 58.072 33.333 0.00 0.00 0.00 1.89
1545 1919 8.674263 ATTTGAGAAGATAAATGTCTAGCAGG 57.326 34.615 0.00 0.00 0.00 4.85
1558 1933 7.881751 CAGATCCAATGGCTATTTGAGAAGATA 59.118 37.037 3.05 0.00 0.00 1.98
1559 1934 6.715718 CAGATCCAATGGCTATTTGAGAAGAT 59.284 38.462 3.05 0.00 0.00 2.40
1564 1939 3.887110 TGCAGATCCAATGGCTATTTGAG 59.113 43.478 3.05 0.00 0.00 3.02
1572 1947 1.547372 ACAGTTTGCAGATCCAATGGC 59.453 47.619 0.00 0.00 0.00 4.40
1573 1948 3.758023 TGTACAGTTTGCAGATCCAATGG 59.242 43.478 0.00 0.00 0.00 3.16
1574 1949 5.571784 ATGTACAGTTTGCAGATCCAATG 57.428 39.130 0.33 0.00 0.00 2.82
1575 1950 6.095440 GGTTATGTACAGTTTGCAGATCCAAT 59.905 38.462 0.33 0.00 0.00 3.16
1617 1992 6.409524 TCCTTCGGTACTTTCTTGTCTTTA 57.590 37.500 0.00 0.00 0.00 1.85
1618 1993 5.286267 TCCTTCGGTACTTTCTTGTCTTT 57.714 39.130 0.00 0.00 0.00 2.52
1620 1995 4.950205 TTCCTTCGGTACTTTCTTGTCT 57.050 40.909 0.00 0.00 0.00 3.41
1621 1996 5.055144 AGTTTCCTTCGGTACTTTCTTGTC 58.945 41.667 0.00 0.00 0.00 3.18
1622 1997 5.032327 AGTTTCCTTCGGTACTTTCTTGT 57.968 39.130 0.00 0.00 0.00 3.16
1623 1998 7.668525 ATAAGTTTCCTTCGGTACTTTCTTG 57.331 36.000 0.00 0.00 33.48 3.02
1624 1999 9.379791 CATATAAGTTTCCTTCGGTACTTTCTT 57.620 33.333 0.00 0.00 33.48 2.52
1626 2001 8.937634 TCATATAAGTTTCCTTCGGTACTTTC 57.062 34.615 0.00 0.00 33.48 2.62
1628 2003 9.901172 ATTTCATATAAGTTTCCTTCGGTACTT 57.099 29.630 0.00 0.00 34.80 2.24
1648 2027 6.058553 TCACAGGACAAGAGATGATTTCAT 57.941 37.500 0.00 0.00 39.70 2.57
1649 2028 5.488262 TCACAGGACAAGAGATGATTTCA 57.512 39.130 0.00 0.00 0.00 2.69
1650 2029 5.936956 ACTTCACAGGACAAGAGATGATTTC 59.063 40.000 0.00 0.00 0.00 2.17
1651 2030 5.874093 ACTTCACAGGACAAGAGATGATTT 58.126 37.500 0.00 0.00 0.00 2.17
1662 2185 4.336889 CTGTTCCTAACTTCACAGGACA 57.663 45.455 0.00 0.00 40.70 4.02
1673 2196 2.224793 ACTGGGCTTTCCTGTTCCTAAC 60.225 50.000 0.00 0.00 43.99 2.34
1694 2217 4.039973 CACGGGCCTCTATTAATGTCCTTA 59.960 45.833 0.84 0.00 0.00 2.69
1699 2222 1.540363 CGCACGGGCCTCTATTAATGT 60.540 52.381 2.82 0.00 36.38 2.71
1700 2223 1.148310 CGCACGGGCCTCTATTAATG 58.852 55.000 2.82 0.00 36.38 1.90
1718 2241 1.589993 CTAGGGACATCTGTGCGCG 60.590 63.158 0.00 0.00 37.24 6.86
1722 2245 4.583871 AGAAAAAGCTAGGGACATCTGTG 58.416 43.478 0.00 0.00 0.00 3.66
1731 2254 5.818336 GCTAAACCTCTAGAAAAAGCTAGGG 59.182 44.000 0.00 0.00 38.45 3.53
1737 2260 6.655003 TGTGATGGCTAAACCTCTAGAAAAAG 59.345 38.462 0.00 0.00 40.22 2.27
1748 2272 2.493547 GCCCTGTGATGGCTAAACC 58.506 57.895 0.00 0.00 45.70 3.27
1801 2328 2.735126 GCATGGTGGCCTATTGTTTTCG 60.735 50.000 3.32 0.00 0.00 3.46
1847 2374 2.645802 ACGGGTGTGCTTAGTTTTGAA 58.354 42.857 0.00 0.00 0.00 2.69
1865 2392 2.095314 TGCATTGACATAGCACCAAACG 60.095 45.455 0.00 0.00 32.55 3.60
1882 2409 3.756933 AGTTGCTGGTCAATTTTGCAT 57.243 38.095 0.00 0.00 36.99 3.96
1885 2412 3.001533 GTGCAAGTTGCTGGTCAATTTTG 59.998 43.478 27.17 0.00 45.31 2.44
1895 2422 1.285023 GCCTCAGTGCAAGTTGCTG 59.715 57.895 27.17 18.37 45.31 4.41
1897 2424 1.860484 GAGGCCTCAGTGCAAGTTGC 61.860 60.000 28.43 21.17 45.29 4.17
1900 2427 1.676384 GAGAGGCCTCAGTGCAAGT 59.324 57.895 33.90 11.28 39.24 3.16
1917 2444 4.825085 AGCAATTTCAAAGTAGGAAACCGA 59.175 37.500 0.00 0.00 37.10 4.69
1918 2445 4.917415 CAGCAATTTCAAAGTAGGAAACCG 59.083 41.667 0.00 0.00 37.10 4.44
1921 2448 4.343526 TGGCAGCAATTTCAAAGTAGGAAA 59.656 37.500 0.00 0.00 38.49 3.13
1926 2453 4.935352 AGTTGGCAGCAATTTCAAAGTA 57.065 36.364 3.63 0.00 0.00 2.24
1963 2490 5.276461 TGGAGAGCAATTAGAAGCGATTA 57.724 39.130 0.00 0.00 35.48 1.75
1968 2495 7.930865 CCCTATATATGGAGAGCAATTAGAAGC 59.069 40.741 0.00 0.00 0.00 3.86
1980 2507 3.115390 GGCTTGGCCCTATATATGGAGA 58.885 50.000 8.15 0.00 44.06 3.71
2143 2670 0.033405 TCCTAGACCGAACCCCTGAG 60.033 60.000 0.00 0.00 0.00 3.35
2155 2682 1.107945 GGCTGTCTGACCTCCTAGAC 58.892 60.000 5.17 0.00 42.77 2.59
2158 2685 3.598273 GAGGCTGTCTGACCTCCTA 57.402 57.895 15.13 0.00 45.71 2.94
2176 2703 2.792947 CGGGGTATCACACCTCCCG 61.793 68.421 4.67 4.67 46.35 5.14
2184 2711 2.803492 GCTTCTGATGTCGGGGTATCAC 60.803 54.545 0.00 0.00 30.66 3.06
2185 2712 1.412710 GCTTCTGATGTCGGGGTATCA 59.587 52.381 0.00 0.00 32.75 2.15
2200 2727 1.681166 GCAGTGGACATGGATGCTTCT 60.681 52.381 0.00 0.00 34.10 2.85
2248 2775 6.744175 ATCTGTGTCATCCAATATGAGACT 57.256 37.500 14.09 0.00 41.27 3.24
2326 2853 1.699656 CGCATTCTGACTCAAGGGCG 61.700 60.000 0.00 0.00 37.17 6.13
2375 2903 9.443283 CAATGAAAGAAACTGAACAGTCTAAAG 57.557 33.333 7.93 0.00 41.58 1.85
2377 2905 8.731275 TCAATGAAAGAAACTGAACAGTCTAA 57.269 30.769 7.93 0.00 41.58 2.10
2464 2994 1.737816 CATGCCTGGCCACATAAGC 59.262 57.895 17.53 0.00 0.00 3.09
2598 3128 2.548920 GGCACTAACAGCAGACTTGTCT 60.549 50.000 0.00 0.00 0.00 3.41
2605 3135 2.047274 GGCGGCACTAACAGCAGA 60.047 61.111 3.07 0.00 0.00 4.26
2611 3141 0.168128 GTCACATTGGCGGCACTAAC 59.832 55.000 12.92 2.08 0.00 2.34
2619 3149 0.523072 CCTTTGGAGTCACATTGGCG 59.477 55.000 0.00 0.00 0.00 5.69
2652 3182 3.230976 TGCAACAGAGTTCAGAGACCTA 58.769 45.455 0.00 0.00 0.00 3.08
2718 3248 2.575279 ACCTCTGATCTTTGCATCAGGT 59.425 45.455 13.65 4.58 46.88 4.00
2727 3257 8.380742 TCTTGTTATAGGAACCTCTGATCTTT 57.619 34.615 0.00 0.00 0.00 2.52
2749 3279 3.055602 GGAGCATTTTTGGCTGGATTCTT 60.056 43.478 0.00 0.00 42.78 2.52
2750 3280 2.498885 GGAGCATTTTTGGCTGGATTCT 59.501 45.455 0.00 0.00 42.78 2.40
2783 3313 6.019075 GGTTTTCTTGACAGTATTTTTGGCAC 60.019 38.462 0.00 0.00 32.13 5.01
2796 3326 3.381272 CCTGCTTCTTGGTTTTCTTGACA 59.619 43.478 0.00 0.00 0.00 3.58
2865 3395 2.641815 AGATTCTTGGTCTGCCTCAACT 59.358 45.455 0.00 0.00 35.27 3.16
2877 3407 2.093447 ACGGAGCTTACCAGATTCTTGG 60.093 50.000 0.00 1.90 44.09 3.61
2897 3427 7.739498 TGTATTAGGAACTCAGGAAAACAAC 57.261 36.000 0.00 0.00 41.75 3.32
2920 3450 7.894376 AATTGCAGAAACAGGTGATATTTTG 57.106 32.000 0.00 0.00 0.00 2.44
2971 3505 5.043248 CCTTCACCACATCAACTGAAAAAC 58.957 41.667 0.00 0.00 0.00 2.43
2972 3506 4.952957 TCCTTCACCACATCAACTGAAAAA 59.047 37.500 0.00 0.00 0.00 1.94
3005 3539 6.806751 TCTTACCATGTTCTCCTTATCTTCG 58.193 40.000 0.00 0.00 0.00 3.79
3031 3565 6.292919 GCAAGAAGACAGTTGAAATTCGTAGT 60.293 38.462 0.00 0.00 0.00 2.73
3032 3566 6.074005 GCAAGAAGACAGTTGAAATTCGTAG 58.926 40.000 0.00 0.00 0.00 3.51
3033 3567 5.525745 TGCAAGAAGACAGTTGAAATTCGTA 59.474 36.000 0.00 0.00 0.00 3.43
3034 3568 4.335315 TGCAAGAAGACAGTTGAAATTCGT 59.665 37.500 0.00 0.00 0.00 3.85
3035 3569 4.847633 TGCAAGAAGACAGTTGAAATTCG 58.152 39.130 0.00 0.00 0.00 3.34
3036 3570 7.436080 TCAATTGCAAGAAGACAGTTGAAATTC 59.564 33.333 4.94 0.00 39.09 2.17
3037 3571 7.267128 TCAATTGCAAGAAGACAGTTGAAATT 58.733 30.769 4.94 0.00 40.94 1.82
3038 3572 6.808829 TCAATTGCAAGAAGACAGTTGAAAT 58.191 32.000 4.94 0.00 38.90 2.17
3043 3577 4.023365 GCTCTCAATTGCAAGAAGACAGTT 60.023 41.667 4.94 0.00 0.00 3.16
3054 3588 5.756833 CAGATATAGTGTGCTCTCAATTGCA 59.243 40.000 0.00 0.00 36.79 4.08
3059 3593 4.160252 TGTGCAGATATAGTGTGCTCTCAA 59.840 41.667 0.00 0.00 46.63 3.02
3066 3613 5.877012 AGAAACCTTGTGCAGATATAGTGTG 59.123 40.000 0.00 0.00 0.00 3.82
3073 3620 4.278170 CCAAACAGAAACCTTGTGCAGATA 59.722 41.667 0.00 0.00 0.00 1.98
3079 3626 4.718940 AGAACCAAACAGAAACCTTGTG 57.281 40.909 0.00 0.00 0.00 3.33
3082 3629 3.769300 AGCAAGAACCAAACAGAAACCTT 59.231 39.130 0.00 0.00 0.00 3.50
3088 3635 4.338118 CCAGTTAAGCAAGAACCAAACAGA 59.662 41.667 0.00 0.00 0.00 3.41
3095 3642 6.759497 ATATGTTCCAGTTAAGCAAGAACC 57.241 37.500 0.00 0.00 36.78 3.62
3111 3662 5.499004 TCCCCCTACAAGCATATATGTTC 57.501 43.478 14.14 0.00 0.00 3.18
3117 3668 2.040813 CAGCATCCCCCTACAAGCATAT 59.959 50.000 0.00 0.00 0.00 1.78
3123 3674 1.770658 CATCTCAGCATCCCCCTACAA 59.229 52.381 0.00 0.00 0.00 2.41
3176 3727 2.099427 GTCGGTCCATCTGTTCTAGACC 59.901 54.545 0.00 0.00 42.94 3.85
3186 3737 3.099905 TGAATCTGAAGTCGGTCCATCT 58.900 45.455 0.00 0.00 0.00 2.90
3189 3740 3.399330 GTTTGAATCTGAAGTCGGTCCA 58.601 45.455 0.00 0.00 0.00 4.02
3280 3831 3.119101 ACAACCGGATAGACAAGTGCTAG 60.119 47.826 9.46 0.00 0.00 3.42
3306 3857 5.694910 CACACTCTTAAAGACATGTTACGGT 59.305 40.000 0.00 0.00 0.00 4.83
3389 3941 0.668706 CAGAAGCTGGACACGGACAG 60.669 60.000 0.00 0.00 37.76 3.51
3438 3990 2.757314 GAGAATTTTCTGCTCAAGGGGG 59.243 50.000 0.00 0.00 37.73 5.40
3439 3991 2.757314 GGAGAATTTTCTGCTCAAGGGG 59.243 50.000 4.74 0.00 41.74 4.79
3446 3998 5.541484 ACAAAATCAGGGAGAATTTTCTGCT 59.459 36.000 10.98 0.00 44.07 4.24
3452 4004 6.983906 AGAACACAAAATCAGGGAGAATTT 57.016 33.333 0.00 0.00 29.46 1.82
3477 4030 2.232941 TGGAACGGAAGGAGTACATGAC 59.767 50.000 0.00 0.00 0.00 3.06
3489 4042 9.941325 TTTAGTACAAAGTAATATGGAACGGAA 57.059 29.630 0.00 0.00 0.00 4.30
3495 4048 9.256477 CGCTGATTTAGTACAAAGTAATATGGA 57.744 33.333 0.00 0.00 0.00 3.41
3507 4060 9.626045 CATATTACTCATCGCTGATTTAGTACA 57.374 33.333 0.00 0.00 0.00 2.90
3508 4061 9.077674 CCATATTACTCATCGCTGATTTAGTAC 57.922 37.037 0.00 0.00 0.00 2.73
3509 4062 9.020731 TCCATATTACTCATCGCTGATTTAGTA 57.979 33.333 0.00 6.50 0.00 1.82
3510 4063 7.896811 TCCATATTACTCATCGCTGATTTAGT 58.103 34.615 0.00 7.78 0.00 2.24
3511 4064 8.651588 GTTCCATATTACTCATCGCTGATTTAG 58.348 37.037 0.00 0.00 0.00 1.85
3512 4065 7.328493 CGTTCCATATTACTCATCGCTGATTTA 59.672 37.037 0.00 0.00 0.00 1.40
3516 4069 4.546570 CGTTCCATATTACTCATCGCTGA 58.453 43.478 0.00 0.00 0.00 4.26
3517 4070 3.675225 CCGTTCCATATTACTCATCGCTG 59.325 47.826 0.00 0.00 0.00 5.18
3518 4071 3.572682 TCCGTTCCATATTACTCATCGCT 59.427 43.478 0.00 0.00 0.00 4.93
3523 4128 3.895656 CTCCCTCCGTTCCATATTACTCA 59.104 47.826 0.00 0.00 0.00 3.41
3524 4129 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
3529 4134 3.858135 ACATACTCCCTCCGTTCCATAT 58.142 45.455 0.00 0.00 0.00 1.78
3531 4136 2.176247 ACATACTCCCTCCGTTCCAT 57.824 50.000 0.00 0.00 0.00 3.41
3532 4137 2.832643 TACATACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
3533 4138 6.186234 ACTATATACATACTCCCTCCGTTCC 58.814 44.000 0.00 0.00 0.00 3.62
3534 4139 8.977267 ATACTATATACATACTCCCTCCGTTC 57.023 38.462 0.00 0.00 0.00 3.95
3565 4170 7.253883 GCAAGAAGAATTATAACATGCAGTTGC 60.254 37.037 10.59 0.00 41.50 4.17
3566 4171 7.972277 AGCAAGAAGAATTATAACATGCAGTTG 59.028 33.333 10.59 0.00 41.50 3.16
3567 4172 7.972277 CAGCAAGAAGAATTATAACATGCAGTT 59.028 33.333 0.00 0.00 44.27 3.16
3568 4173 7.478322 CAGCAAGAAGAATTATAACATGCAGT 58.522 34.615 0.00 0.00 33.89 4.40
3569 4174 6.417044 GCAGCAAGAAGAATTATAACATGCAG 59.583 38.462 0.00 4.02 33.89 4.41
3570 4175 6.267817 GCAGCAAGAAGAATTATAACATGCA 58.732 36.000 0.00 0.00 33.89 3.96
3571 4176 5.397534 CGCAGCAAGAAGAATTATAACATGC 59.602 40.000 0.00 0.00 0.00 4.06
3591 4196 2.095212 TCACAGACTACTAAGCACGCAG 60.095 50.000 0.00 0.00 0.00 5.18
3615 4220 5.458891 GCATGTGCATAGAATTGAAGATCC 58.541 41.667 0.00 0.00 41.59 3.36
3635 4240 2.664185 CATAGAGCGCGCAGGCAT 60.664 61.111 35.10 17.29 39.92 4.40
3669 4274 1.424403 TCATGACCACGCAGTAAACG 58.576 50.000 0.00 0.00 41.61 3.60
3671 4276 3.326836 TGATCATGACCACGCAGTAAA 57.673 42.857 0.00 0.00 41.61 2.01
3678 4283 2.028420 ACCACATGATCATGACCACG 57.972 50.000 36.37 21.05 41.20 4.94
3680 4285 5.103982 AGGATAAACCACATGATCATGACCA 60.104 40.000 36.37 17.56 40.10 4.02
3681 4286 5.380043 AGGATAAACCACATGATCATGACC 58.620 41.667 36.37 23.24 40.10 4.02
3682 4287 6.949352 AAGGATAAACCACATGATCATGAC 57.051 37.500 36.37 17.52 40.10 3.06
3683 4288 7.118060 TGAAAGGATAAACCACATGATCATGA 58.882 34.615 36.37 17.26 40.10 3.07
3684 4289 7.337480 TGAAAGGATAAACCACATGATCATG 57.663 36.000 29.95 29.95 42.04 3.07
3685 4290 8.543293 AATGAAAGGATAAACCACATGATCAT 57.457 30.769 1.18 1.18 42.04 2.45
3722 4327 3.382865 GCTCTGGATACTGTGACAGATCA 59.617 47.826 20.97 10.07 39.06 2.92
3728 4333 1.469940 CCGTGCTCTGGATACTGTGAC 60.470 57.143 0.00 0.00 36.78 3.67
3747 4352 0.179073 CCGACATCCATGTGACCTCC 60.179 60.000 0.00 0.00 41.95 4.30
3764 4369 5.882553 ACAAGTTGTAGTTAACCAAAACCG 58.117 37.500 6.75 0.00 0.00 4.44
3767 4372 7.122353 TGGCTTACAAGTTGTAGTTAACCAAAA 59.878 33.333 15.06 0.00 33.92 2.44
3772 4377 6.607735 TGTGGCTTACAAGTTGTAGTTAAC 57.392 37.500 15.06 12.78 36.06 2.01
3803 4408 7.686438 TCTAAAGCAAAATGATTACAGAGCA 57.314 32.000 0.00 0.00 0.00 4.26
3853 4458 3.740321 GCGAAGAGATGCAGAGGATAAAG 59.260 47.826 0.00 0.00 0.00 1.85
3860 4465 1.925847 GACAAGCGAAGAGATGCAGAG 59.074 52.381 0.00 0.00 0.00 3.35
3905 4511 3.499918 CCAGTCTTTGGCTGTAAACTCAG 59.500 47.826 0.00 0.00 40.87 3.35
3929 4535 4.459606 TGTTGAAACACATTAATCGACGC 58.540 39.130 0.00 0.00 33.17 5.19
3930 4536 4.549599 GCTGTTGAAACACATTAATCGACG 59.450 41.667 0.00 0.00 34.70 5.12
3933 4539 5.211454 TGTGCTGTTGAAACACATTAATCG 58.789 37.500 0.00 0.00 39.29 3.34
4000 4606 8.167487 CTGCAACCAATTGGCTAATTGCAAAA 62.167 38.462 34.39 21.93 46.08 2.44
4001 4607 6.767536 CTGCAACCAATTGGCTAATTGCAAA 61.768 40.000 34.39 22.42 46.08 3.68
4023 4629 2.584418 CTCTCGGGCATGACGCTG 60.584 66.667 0.00 0.00 41.91 5.18
4033 4639 3.775654 GCCTGTGGGTCTCTCGGG 61.776 72.222 0.00 0.00 38.19 5.14
4051 4659 3.196469 TCCACAAGTCTATTCTCTGCCAG 59.804 47.826 0.00 0.00 0.00 4.85
4055 4663 5.413309 ACCTTCCACAAGTCTATTCTCTG 57.587 43.478 0.00 0.00 0.00 3.35
4069 4677 5.116882 GTGTTCCTATCATGTACCTTCCAC 58.883 45.833 0.00 0.00 0.00 4.02
4137 4745 6.444633 CACCCAGATACGATCGTATTTAGTT 58.555 40.000 34.41 17.71 40.93 2.24
4146 4754 2.016704 GCGCACCCAGATACGATCG 61.017 63.158 14.88 14.88 0.00 3.69
4148 4756 1.227263 GTGCGCACCCAGATACGAT 60.227 57.895 30.12 0.00 0.00 3.73
4150 4758 2.125713 TGTGCGCACCCAGATACG 60.126 61.111 35.72 0.00 0.00 3.06
4151 4759 3.486263 GTGTGCGCACCCAGATAC 58.514 61.111 35.72 22.61 39.61 2.24
4160 4768 1.723608 CTCAAAACCAGGTGTGCGCA 61.724 55.000 5.66 5.66 0.00 6.09
4161 4769 1.008538 CTCAAAACCAGGTGTGCGC 60.009 57.895 0.00 0.00 0.00 6.09
4162 4770 1.238439 ATCTCAAAACCAGGTGTGCG 58.762 50.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.