Multiple sequence alignment - TraesCS7A01G367600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G367600 chr7A 100.000 3161 0 0 1 3161 540881768 540878608 0.000000e+00 5838.0
1 TraesCS7A01G367600 chr7A 100.000 28 0 0 2865 2892 722870909 722870882 6.000000e-03 52.8
2 TraesCS7A01G367600 chr7D 92.794 2165 125 11 230 2391 459397061 459399197 0.000000e+00 3105.0
3 TraesCS7A01G367600 chr7D 94.366 213 10 2 3 214 459396327 459396538 3.040000e-85 326.0
4 TraesCS7A01G367600 chr7D 90.164 61 3 1 2465 2525 123053445 123053388 3.380000e-10 76.8
5 TraesCS7A01G367600 chr7B 93.193 1998 113 11 368 2363 481308873 481310849 0.000000e+00 2915.0
6 TraesCS7A01G367600 chr7B 94.366 213 10 2 3 214 481308045 481308256 3.040000e-85 326.0
7 TraesCS7A01G367600 chr7B 81.735 219 20 15 2961 3161 481312077 481312293 7.010000e-37 165.0
8 TraesCS7A01G367600 chr7B 89.908 109 8 2 230 338 481308773 481308878 1.530000e-28 137.0
9 TraesCS7A01G367600 chr7B 100.000 28 0 0 2865 2892 728008513 728008486 6.000000e-03 52.8
10 TraesCS7A01G367600 chr3B 87.884 1593 160 26 781 2361 606657793 606656222 0.000000e+00 1842.0
11 TraesCS7A01G367600 chr3A 87.554 1615 164 24 764 2361 601412852 601411258 0.000000e+00 1834.0
12 TraesCS7A01G367600 chr3D 87.320 1601 169 23 781 2367 459224286 459222706 0.000000e+00 1801.0
13 TraesCS7A01G367600 chr3D 83.696 92 11 1 319 410 459224780 459224693 2.020000e-12 84.2
14 TraesCS7A01G367600 chr6B 88.182 110 12 1 1455 1564 211960823 211960715 2.560000e-26 130.0
15 TraesCS7A01G367600 chr1D 88.182 110 12 1 1455 1564 176954337 176954445 2.560000e-26 130.0
16 TraesCS7A01G367600 chr5B 91.667 60 5 0 2462 2521 69548109 69548050 2.020000e-12 84.2
17 TraesCS7A01G367600 chr6A 90.323 62 6 0 2463 2524 454654060 454653999 7.270000e-12 82.4
18 TraesCS7A01G367600 chr6A 90.000 60 5 1 2462 2521 569805 569863 3.380000e-10 76.8
19 TraesCS7A01G367600 chr2B 88.571 70 4 2 2452 2521 408191256 408191321 7.270000e-12 82.4
20 TraesCS7A01G367600 chr2B 88.889 63 5 2 2465 2525 38218230 38218292 3.380000e-10 76.8
21 TraesCS7A01G367600 chr4D 95.745 47 2 0 2747 2793 501160767 501160721 3.380000e-10 76.8
22 TraesCS7A01G367600 chr2A 94.000 50 3 0 2456 2505 199101204 199101253 3.380000e-10 76.8
23 TraesCS7A01G367600 chr2A 85.915 71 9 1 2451 2521 755928722 755928653 1.220000e-09 75.0
24 TraesCS7A01G367600 chr5D 88.525 61 7 0 2465 2525 174010659 174010599 1.220000e-09 75.0
25 TraesCS7A01G367600 chr1A 89.362 47 1 2 2846 2892 451571757 451571715 4.400000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G367600 chr7A 540878608 540881768 3160 True 5838.00 5838 100.0000 1 3161 1 chr7A.!!$R1 3160
1 TraesCS7A01G367600 chr7D 459396327 459399197 2870 False 1715.50 3105 93.5800 3 2391 2 chr7D.!!$F1 2388
2 TraesCS7A01G367600 chr7B 481308045 481312293 4248 False 885.75 2915 89.8005 3 3161 4 chr7B.!!$F1 3158
3 TraesCS7A01G367600 chr3B 606656222 606657793 1571 True 1842.00 1842 87.8840 781 2361 1 chr3B.!!$R1 1580
4 TraesCS7A01G367600 chr3A 601411258 601412852 1594 True 1834.00 1834 87.5540 764 2361 1 chr3A.!!$R1 1597
5 TraesCS7A01G367600 chr3D 459222706 459224780 2074 True 942.60 1801 85.5080 319 2367 2 chr3D.!!$R1 2048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 150 0.167470 CTCGCATGACTGCTGTTTGG 59.833 55.0 0.00 0.00 46.65 3.28 F
971 1582 0.172578 CATGGACATGCAGTGCCAAG 59.827 55.0 13.72 4.78 37.86 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2495 0.037590 TCTTGGCAGCCATTACCGTT 59.962 50.0 17.09 0.00 31.53 4.44 R
2939 4487 0.179015 TTTTGGTGCTCGGGCTACAA 60.179 50.0 9.62 11.18 39.59 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.696707 CTGTTGGATTTGATGGATGGGG 59.303 50.000 0.00 0.00 0.00 4.96
132 134 2.271800 GATACACTTTCCTGTGGCTCG 58.728 52.381 0.00 0.00 41.84 5.03
140 142 2.104859 CCTGTGGCTCGCATGACTG 61.105 63.158 0.00 0.00 0.00 3.51
148 150 0.167470 CTCGCATGACTGCTGTTTGG 59.833 55.000 0.00 0.00 46.65 3.28
173 175 1.898574 CTTGCCGTGGCCTCTGTTT 60.899 57.895 8.69 0.00 41.09 2.83
201 203 0.458543 TCCATTTCTCAGCTCGACGC 60.459 55.000 0.00 0.00 39.57 5.19
214 216 0.787787 TCGACGCGAAGAATGGTTTG 59.212 50.000 15.93 0.00 31.06 2.93
215 217 0.511221 CGACGCGAAGAATGGTTTGT 59.489 50.000 15.93 0.00 0.00 2.83
216 218 1.461888 CGACGCGAAGAATGGTTTGTC 60.462 52.381 15.93 0.00 0.00 3.18
217 219 0.511221 ACGCGAAGAATGGTTTGTCG 59.489 50.000 15.93 0.00 0.00 4.35
218 220 0.511221 CGCGAAGAATGGTTTGTCGT 59.489 50.000 0.00 0.00 0.00 4.34
219 221 1.461888 CGCGAAGAATGGTTTGTCGTC 60.462 52.381 0.00 0.00 0.00 4.20
220 222 1.529438 GCGAAGAATGGTTTGTCGTCA 59.471 47.619 0.00 0.00 0.00 4.35
221 223 2.159627 GCGAAGAATGGTTTGTCGTCAT 59.840 45.455 0.00 0.00 0.00 3.06
223 225 3.431912 CGAAGAATGGTTTGTCGTCATGA 59.568 43.478 0.00 0.00 0.00 3.07
224 226 4.093408 CGAAGAATGGTTTGTCGTCATGAT 59.907 41.667 0.00 0.00 0.00 2.45
225 227 4.952262 AGAATGGTTTGTCGTCATGATG 57.048 40.909 8.74 8.74 0.00 3.07
227 229 5.487433 AGAATGGTTTGTCGTCATGATGTA 58.513 37.500 14.52 3.00 0.00 2.29
228 230 5.582269 AGAATGGTTTGTCGTCATGATGTAG 59.418 40.000 14.52 0.00 0.00 2.74
249 759 1.419762 TGATGTACCAGCACAGGTTGT 59.580 47.619 0.69 0.00 43.08 3.32
298 808 4.965119 CCCACTTGGTAATAAAGCTCAC 57.035 45.455 0.00 0.00 0.00 3.51
299 809 4.331968 CCCACTTGGTAATAAAGCTCACA 58.668 43.478 0.00 0.00 0.00 3.58
308 818 6.826741 TGGTAATAAAGCTCACACTTTATCCC 59.173 38.462 9.32 11.76 46.93 3.85
334 844 0.752054 AGGTGTGTTTGCAACCATGG 59.248 50.000 11.19 11.19 0.00 3.66
336 846 0.879839 GTGTGTTTGCAACCATGGCC 60.880 55.000 13.04 0.00 0.00 5.36
343 853 0.178967 TGCAACCATGGCCTCAAGAA 60.179 50.000 13.04 0.00 0.00 2.52
347 857 0.706433 ACCATGGCCTCAAGAACCAT 59.294 50.000 13.04 0.00 45.08 3.55
349 859 2.892025 ATGGCCTCAAGAACCATGC 58.108 52.632 3.32 0.00 42.59 4.06
358 868 4.403432 CCTCAAGAACCATGCCATACATTT 59.597 41.667 0.00 0.00 36.64 2.32
359 869 5.105228 CCTCAAGAACCATGCCATACATTTT 60.105 40.000 0.00 0.00 36.64 1.82
360 870 6.357579 TCAAGAACCATGCCATACATTTTT 57.642 33.333 0.00 0.00 36.64 1.94
412 922 0.541764 TTTCATGGAACCCACTGGCC 60.542 55.000 0.00 0.00 35.80 5.36
414 924 1.077265 CATGGAACCCACTGGCCTT 59.923 57.895 3.32 0.00 35.80 4.35
430 940 1.672737 GCCTTTTGTGGCCAACATAGC 60.673 52.381 7.24 2.56 46.82 2.97
434 944 4.887071 CCTTTTGTGGCCAACATAGCTATA 59.113 41.667 7.24 0.00 38.99 1.31
448 958 9.023967 CAACATAGCTATAAAGTTTTGAATGGC 57.976 33.333 5.77 0.00 0.00 4.40
491 1001 1.609783 GCTGCCCTGAGGTGGTAAT 59.390 57.895 0.00 0.00 34.57 1.89
501 1011 0.846693 AGGTGGTAATCCCAGGCATC 59.153 55.000 0.00 0.00 46.45 3.91
506 1016 3.117663 GTGGTAATCCCAGGCATCCTTAA 60.118 47.826 0.00 0.00 46.45 1.85
520 1031 5.063817 GGCATCCTTAATGTTTGTGAATTGC 59.936 40.000 0.00 0.00 37.71 3.56
522 1033 4.804108 TCCTTAATGTTTGTGAATTGCGG 58.196 39.130 0.00 0.00 0.00 5.69
534 1045 1.471287 GAATTGCGGGAACAGGGTTAC 59.529 52.381 0.00 0.00 0.00 2.50
536 1047 2.435410 GCGGGAACAGGGTTACGG 60.435 66.667 7.47 2.19 0.00 4.02
541 1052 1.003928 GGGAACAGGGTTACGGTGATT 59.996 52.381 0.00 0.00 0.00 2.57
629 1140 5.420725 AGCAACATATTCTGTAGGTGTCA 57.579 39.130 0.00 0.00 36.98 3.58
637 1148 7.766278 ACATATTCTGTAGGTGTCATTTCAGAC 59.234 37.037 0.00 0.00 35.91 3.51
649 1160 8.251721 GGTGTCATTTCAGACTAGTACTATGTT 58.748 37.037 2.33 0.00 39.27 2.71
703 1223 7.768807 AGTATTTGGCCAACATTTTACACTA 57.231 32.000 20.35 0.00 0.00 2.74
774 1373 6.088824 GTCTTCAATGTTTTAGTGATGCTGG 58.911 40.000 0.00 0.00 32.79 4.85
807 1415 7.275183 TCTTGTATCTTGTTGATCACCATAGG 58.725 38.462 0.00 0.00 36.65 2.57
886 1495 9.502091 TTTATCAGCAGTTAGACATTGTTAGTT 57.498 29.630 0.00 0.00 0.00 2.24
920 1531 5.247110 TCTTTGCTTCATGGTAGTTCTCTCT 59.753 40.000 0.00 0.00 0.00 3.10
971 1582 0.172578 CATGGACATGCAGTGCCAAG 59.827 55.000 13.72 4.78 37.86 3.61
979 1590 3.357079 CAGTGCCAAGACCGTGCC 61.357 66.667 0.00 0.00 0.00 5.01
980 1591 3.872603 AGTGCCAAGACCGTGCCA 61.873 61.111 0.00 0.00 0.00 4.92
994 1605 1.235724 GTGCCACTTAGTTGGGTGTC 58.764 55.000 0.00 0.00 37.10 3.67
1006 1617 2.038863 TGGGTGTCCTACAATGGAGT 57.961 50.000 0.00 0.00 36.69 3.85
1011 1622 4.003648 GGTGTCCTACAATGGAGTTTGAG 58.996 47.826 0.00 0.00 36.69 3.02
1023 1634 7.015682 ACAATGGAGTTTGAGAGTCTAAGAGAA 59.984 37.037 0.00 0.00 0.00 2.87
1065 1676 7.773864 TGAAAAACGTGTGTTATCTTCTACA 57.226 32.000 0.00 0.00 37.31 2.74
1079 1690 9.274206 GTTATCTTCTACAAAAGTTCAGGAAGT 57.726 33.333 0.00 0.00 33.00 3.01
1173 1784 3.760151 ACAGTTGTGACCATTCATCCATG 59.240 43.478 0.00 0.00 33.11 3.66
1243 1854 2.878406 CTCGAAGGCTGTCAAAAGGAAA 59.122 45.455 0.00 0.00 0.00 3.13
1292 1903 6.214399 TCAAGGTTCTCGAGAAGTCTTTTAC 58.786 40.000 27.70 13.97 34.27 2.01
1400 2011 3.269178 GCCTCTTTGATCTTGGAGACTG 58.731 50.000 9.71 0.00 0.00 3.51
1436 2047 2.606725 GCGGTGAATCAGATGAGACTTG 59.393 50.000 0.00 0.00 0.00 3.16
1446 2057 4.698780 TCAGATGAGACTTGCCTGAAATTG 59.301 41.667 0.00 0.00 31.72 2.32
1542 2153 4.264253 CCAAGAACCATGATCAGCTGTTA 58.736 43.478 14.67 1.52 0.00 2.41
1619 2230 2.373169 TCACCAAAGGAAGCAGAGATGT 59.627 45.455 0.00 0.00 0.00 3.06
1635 2246 5.905733 CAGAGATGTTGCTTTACAATATGCG 59.094 40.000 0.00 0.00 39.89 4.73
1746 2357 1.134220 TCCCCATATGCCGAGTTTGTC 60.134 52.381 0.00 0.00 0.00 3.18
1819 2430 2.024846 AGCCTCTTAGGTCAGTCTAGCA 60.025 50.000 0.00 0.00 37.80 3.49
1833 2444 1.414181 TCTAGCAATAGCCCACTGAGC 59.586 52.381 0.00 0.00 43.56 4.26
1863 2474 0.316204 CAGCTGGTTTTCAAGGGCTG 59.684 55.000 5.57 0.00 40.52 4.85
1884 2495 2.360801 GCCAACCTTGTTGAAGCTAACA 59.639 45.455 8.47 0.00 38.69 2.41
1908 2519 1.545582 GTAATGGCTGCCAAGAAGCAA 59.454 47.619 27.24 0.00 43.52 3.91
2160 2771 3.439476 AGTGCAAGCAGCTTCATTTCTAG 59.561 43.478 4.07 0.00 45.94 2.43
2169 2780 6.026513 GCAGCTTCATTTCTAGATGTTTCAC 58.973 40.000 0.00 0.00 30.75 3.18
2205 2821 7.826690 TCAAATTCTGTTTATACAAGCCCTTC 58.173 34.615 0.00 0.00 32.92 3.46
2229 2845 4.074627 TCGTGTTTCTGTTTCACCCATA 57.925 40.909 0.00 0.00 0.00 2.74
2363 3063 6.986904 AATAAGTTTCACTACTGGCTTAGC 57.013 37.500 0.00 0.00 0.00 3.09
2375 3075 0.802607 GGCTTAGCCTGTCGTTCGAG 60.803 60.000 17.16 0.00 46.69 4.04
2385 3085 1.135489 TGTCGTTCGAGTCCTGTATGC 60.135 52.381 0.00 0.00 0.00 3.14
2391 3091 2.654863 TCGAGTCCTGTATGCTCATGA 58.345 47.619 0.00 0.00 0.00 3.07
2401 3101 7.279536 GTCCTGTATGCTCATGATATATTGGTG 59.720 40.741 0.00 0.00 0.00 4.17
2404 3104 8.726870 TGTATGCTCATGATATATTGGTGATG 57.273 34.615 0.00 0.00 0.00 3.07
2417 3117 5.698741 ATTGGTGATGAAGTCATGTAGGA 57.301 39.130 0.00 0.00 39.48 2.94
2425 3125 7.716998 GTGATGAAGTCATGTAGGATGGTAAAT 59.283 37.037 0.00 0.00 39.48 1.40
2426 3126 8.274322 TGATGAAGTCATGTAGGATGGTAAATT 58.726 33.333 0.00 0.00 36.57 1.82
2427 3127 9.125026 GATGAAGTCATGTAGGATGGTAAATTT 57.875 33.333 0.00 0.00 36.57 1.82
2428 3128 8.279970 TGAAGTCATGTAGGATGGTAAATTTG 57.720 34.615 0.00 0.00 0.00 2.32
2429 3129 6.699575 AGTCATGTAGGATGGTAAATTTGC 57.300 37.500 0.00 0.00 0.00 3.68
2430 3130 6.426587 AGTCATGTAGGATGGTAAATTTGCT 58.573 36.000 6.23 0.00 0.00 3.91
2431 3131 7.573710 AGTCATGTAGGATGGTAAATTTGCTA 58.426 34.615 6.23 0.09 0.00 3.49
2435 3135 5.883673 TGTAGGATGGTAAATTTGCTACACC 59.116 40.000 6.23 7.67 38.74 4.16
2469 3169 6.036517 CCAGATTGTGCTTAGTCATGTACTTC 59.963 42.308 0.00 0.00 39.80 3.01
2472 3172 5.073311 TGTGCTTAGTCATGTACTTCCTC 57.927 43.478 0.00 0.00 39.80 3.71
2473 3173 4.081642 TGTGCTTAGTCATGTACTTCCTCC 60.082 45.833 0.00 0.00 39.80 4.30
2474 3174 3.130516 TGCTTAGTCATGTACTTCCTCCG 59.869 47.826 0.00 0.00 39.80 4.63
2475 3175 3.380637 GCTTAGTCATGTACTTCCTCCGA 59.619 47.826 0.00 0.00 39.80 4.55
2477 3177 5.623824 GCTTAGTCATGTACTTCCTCCGAAA 60.624 44.000 0.00 0.00 39.80 3.46
2478 3178 4.884668 AGTCATGTACTTCCTCCGAAAA 57.115 40.909 0.00 0.00 33.35 2.29
2479 3179 4.822026 AGTCATGTACTTCCTCCGAAAAG 58.178 43.478 0.00 0.00 33.35 2.27
2480 3180 4.527038 AGTCATGTACTTCCTCCGAAAAGA 59.473 41.667 0.00 0.00 33.35 2.52
2481 3181 5.011738 AGTCATGTACTTCCTCCGAAAAGAA 59.988 40.000 0.00 0.00 33.35 2.52
2482 3182 5.699458 GTCATGTACTTCCTCCGAAAAGAAA 59.301 40.000 0.00 0.00 0.00 2.52
2484 3184 7.548075 GTCATGTACTTCCTCCGAAAAGAAATA 59.452 37.037 0.00 0.00 0.00 1.40
2485 3185 8.265055 TCATGTACTTCCTCCGAAAAGAAATAT 58.735 33.333 0.00 0.00 0.00 1.28
2486 3186 9.542462 CATGTACTTCCTCCGAAAAGAAATATA 57.458 33.333 0.00 0.00 0.00 0.86
2488 3188 9.595823 TGTACTTCCTCCGAAAAGAAATATAAG 57.404 33.333 0.00 0.00 0.00 1.73
2489 3189 9.813446 GTACTTCCTCCGAAAAGAAATATAAGA 57.187 33.333 0.00 0.00 0.00 2.10
2490 3190 8.950208 ACTTCCTCCGAAAAGAAATATAAGAG 57.050 34.615 0.00 0.00 0.00 2.85
2491 3191 7.496263 ACTTCCTCCGAAAAGAAATATAAGAGC 59.504 37.037 0.00 0.00 0.00 4.09
2492 3192 5.983720 TCCTCCGAAAAGAAATATAAGAGCG 59.016 40.000 0.00 0.00 0.00 5.03
2495 3195 7.201617 CCTCCGAAAAGAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
2496 3196 8.706492 TCCGAAAAGAAATATAAGAGCGTTTA 57.294 30.769 0.00 0.00 0.00 2.01
2497 3197 8.814235 TCCGAAAAGAAATATAAGAGCGTTTAG 58.186 33.333 0.00 0.00 0.00 1.85
2506 3206 8.951954 AATATAAGAGCGTTTAGATCACTACG 57.048 34.615 8.56 8.56 37.82 3.51
2507 3207 3.067721 AGAGCGTTTAGATCACTACGC 57.932 47.619 22.66 22.66 41.29 4.42
2511 3237 2.777494 CGTTTAGATCACTACGCGACA 58.223 47.619 15.93 0.00 32.07 4.35
2521 3247 1.339438 ACTACGCGACAGAGGGAGTAA 60.339 52.381 15.93 0.00 0.00 2.24
2522 3248 1.948145 CTACGCGACAGAGGGAGTAAT 59.052 52.381 15.93 0.00 0.00 1.89
2526 3252 3.114065 CGCGACAGAGGGAGTAATAAAC 58.886 50.000 0.00 0.00 0.00 2.01
2527 3253 3.428452 CGCGACAGAGGGAGTAATAAACA 60.428 47.826 0.00 0.00 0.00 2.83
2528 3254 3.864003 GCGACAGAGGGAGTAATAAACAC 59.136 47.826 0.00 0.00 0.00 3.32
2529 3255 4.619863 GCGACAGAGGGAGTAATAAACACA 60.620 45.833 0.00 0.00 0.00 3.72
2530 3256 5.475719 CGACAGAGGGAGTAATAAACACAA 58.524 41.667 0.00 0.00 0.00 3.33
2531 3257 5.929992 CGACAGAGGGAGTAATAAACACAAA 59.070 40.000 0.00 0.00 0.00 2.83
2532 3258 6.425721 CGACAGAGGGAGTAATAAACACAAAA 59.574 38.462 0.00 0.00 0.00 2.44
2574 3300 8.914328 CATGTTAATCATGTATGCAAGACAAA 57.086 30.769 8.69 1.92 46.18 2.83
2575 3301 9.524106 CATGTTAATCATGTATGCAAGACAAAT 57.476 29.630 8.69 3.92 46.18 2.32
2581 3307 9.961265 AATCATGTATGCAAGACAAATTAGATG 57.039 29.630 8.69 0.56 0.00 2.90
2582 3308 7.933396 TCATGTATGCAAGACAAATTAGATGG 58.067 34.615 8.69 0.00 0.00 3.51
2583 3309 7.774625 TCATGTATGCAAGACAAATTAGATGGA 59.225 33.333 8.69 0.00 0.00 3.41
2584 3310 7.558161 TGTATGCAAGACAAATTAGATGGAG 57.442 36.000 2.48 0.00 0.00 3.86
2589 4137 9.851686 ATGCAAGACAAATTAGATGGAGTATTA 57.148 29.630 0.00 0.00 0.00 0.98
2597 4145 6.591750 ATTAGATGGAGTATTAGACACGGG 57.408 41.667 0.00 0.00 0.00 5.28
2600 4148 1.754803 TGGAGTATTAGACACGGGCTG 59.245 52.381 0.00 0.00 0.00 4.85
2606 4154 5.797051 AGTATTAGACACGGGCTGTTTTTA 58.203 37.500 0.00 0.00 31.03 1.52
2608 4156 6.882678 AGTATTAGACACGGGCTGTTTTTAAT 59.117 34.615 11.65 11.65 31.03 1.40
2615 4163 3.506067 ACGGGCTGTTTTTAATCTTGAGG 59.494 43.478 0.00 0.00 0.00 3.86
2623 4171 6.738114 TGTTTTTAATCTTGAGGCTTGAGTG 58.262 36.000 0.00 0.00 0.00 3.51
2649 4197 5.858581 GGTATGTTTTGTGAGCATGAACTTC 59.141 40.000 0.00 0.00 0.00 3.01
2657 4205 4.572795 TGTGAGCATGAACTTCGTTAACAA 59.427 37.500 6.39 0.00 0.00 2.83
2661 4209 4.819630 AGCATGAACTTCGTTAACAAGGAA 59.180 37.500 16.79 7.97 34.48 3.36
2663 4211 5.398416 GCATGAACTTCGTTAACAAGGAAAC 59.602 40.000 16.79 9.01 35.17 2.78
2667 4215 5.432885 ACTTCGTTAACAAGGAAACCATG 57.567 39.130 16.79 0.00 35.17 3.66
2668 4216 5.127491 ACTTCGTTAACAAGGAAACCATGA 58.873 37.500 16.79 0.00 35.17 3.07
2669 4217 5.238650 ACTTCGTTAACAAGGAAACCATGAG 59.761 40.000 16.79 0.00 35.17 2.90
2670 4218 4.710324 TCGTTAACAAGGAAACCATGAGT 58.290 39.130 6.39 0.00 0.00 3.41
2671 4219 4.513692 TCGTTAACAAGGAAACCATGAGTG 59.486 41.667 6.39 0.00 0.00 3.51
2672 4220 4.546570 GTTAACAAGGAAACCATGAGTGC 58.453 43.478 0.00 0.00 0.00 4.40
2673 4221 2.363306 ACAAGGAAACCATGAGTGCA 57.637 45.000 0.00 0.00 0.00 4.57
2674 4222 2.665165 ACAAGGAAACCATGAGTGCAA 58.335 42.857 0.00 0.00 0.00 4.08
2675 4223 3.030291 ACAAGGAAACCATGAGTGCAAA 58.970 40.909 0.00 0.00 0.00 3.68
2676 4224 3.068590 ACAAGGAAACCATGAGTGCAAAG 59.931 43.478 0.00 0.00 0.00 2.77
2677 4225 2.949447 AGGAAACCATGAGTGCAAAGT 58.051 42.857 0.00 0.00 0.00 2.66
2678 4226 3.299503 AGGAAACCATGAGTGCAAAGTT 58.700 40.909 0.00 0.00 0.00 2.66
2679 4227 3.706086 AGGAAACCATGAGTGCAAAGTTT 59.294 39.130 0.00 0.00 36.56 2.66
2680 4228 4.051237 GGAAACCATGAGTGCAAAGTTTC 58.949 43.478 9.92 9.92 42.90 2.78
2681 4229 4.441356 GGAAACCATGAGTGCAAAGTTTCA 60.441 41.667 16.49 7.36 44.06 2.69
2682 4230 4.942761 AACCATGAGTGCAAAGTTTCAT 57.057 36.364 0.00 0.00 0.00 2.57
2683 4231 6.403866 AAACCATGAGTGCAAAGTTTCATA 57.596 33.333 0.00 0.00 31.54 2.15
2684 4232 6.403866 AACCATGAGTGCAAAGTTTCATAA 57.596 33.333 0.00 0.00 0.00 1.90
2685 4233 6.403866 ACCATGAGTGCAAAGTTTCATAAA 57.596 33.333 0.00 0.00 0.00 1.40
2686 4234 6.815089 ACCATGAGTGCAAAGTTTCATAAAA 58.185 32.000 0.00 0.00 0.00 1.52
2687 4235 7.444299 ACCATGAGTGCAAAGTTTCATAAAAT 58.556 30.769 0.00 0.00 0.00 1.82
2688 4236 7.599998 ACCATGAGTGCAAAGTTTCATAAAATC 59.400 33.333 0.00 0.00 0.00 2.17
2689 4237 7.599621 CCATGAGTGCAAAGTTTCATAAAATCA 59.400 33.333 0.00 0.00 0.00 2.57
2690 4238 7.928908 TGAGTGCAAAGTTTCATAAAATCAC 57.071 32.000 0.00 0.00 0.00 3.06
2691 4239 7.487484 TGAGTGCAAAGTTTCATAAAATCACA 58.513 30.769 0.00 0.00 0.00 3.58
2692 4240 8.143193 TGAGTGCAAAGTTTCATAAAATCACAT 58.857 29.630 0.00 0.00 0.00 3.21
2693 4241 8.891671 AGTGCAAAGTTTCATAAAATCACATT 57.108 26.923 0.00 0.00 0.00 2.71
2694 4242 9.328845 AGTGCAAAGTTTCATAAAATCACATTT 57.671 25.926 0.00 0.00 0.00 2.32
2695 4243 9.934190 GTGCAAAGTTTCATAAAATCACATTTT 57.066 25.926 0.00 0.23 44.13 1.82
2744 4292 7.581213 TTTTTCCAAACATACAGAGACATGT 57.419 32.000 0.00 0.00 36.96 3.21
2745 4293 6.801539 TTTCCAAACATACAGAGACATGTC 57.198 37.500 18.47 18.47 34.32 3.06
2746 4294 5.745312 TCCAAACATACAGAGACATGTCT 57.255 39.130 28.23 28.23 43.78 3.41
2759 4307 8.891367 CAGAGACATGTCTGTAAAATTTCATG 57.109 34.615 32.50 8.96 40.61 3.07
2760 4308 8.724229 CAGAGACATGTCTGTAAAATTTCATGA 58.276 33.333 32.50 0.00 40.61 3.07
2761 4309 8.944029 AGAGACATGTCTGTAAAATTTCATGAG 58.056 33.333 32.50 2.45 40.61 2.90
2762 4310 8.853077 AGACATGTCTGTAAAATTTCATGAGA 57.147 30.769 27.37 0.00 38.75 3.27
2763 4311 9.288576 AGACATGTCTGTAAAATTTCATGAGAA 57.711 29.630 27.37 0.00 38.75 2.87
2764 4312 9.897744 GACATGTCTGTAAAATTTCATGAGAAA 57.102 29.630 18.83 3.19 40.87 2.52
2830 4378 9.999660 TGGTTTTTATATAGTGAACAGTACACA 57.000 29.630 0.00 0.00 40.25 3.72
2845 4393 6.422776 CAGTACACACTGTTCAGAACTTTT 57.577 37.500 14.51 0.00 46.03 2.27
2846 4394 6.842163 CAGTACACACTGTTCAGAACTTTTT 58.158 36.000 14.51 0.00 46.03 1.94
2866 4414 6.978343 TTTTTGTGTAGCTCGCTAATGTAT 57.022 33.333 0.00 0.00 0.00 2.29
2867 4415 6.978343 TTTTGTGTAGCTCGCTAATGTATT 57.022 33.333 0.00 0.00 0.00 1.89
2868 4416 6.978343 TTTGTGTAGCTCGCTAATGTATTT 57.022 33.333 0.00 0.00 0.00 1.40
2869 4417 6.583912 TTGTGTAGCTCGCTAATGTATTTC 57.416 37.500 0.00 0.00 0.00 2.17
2870 4418 5.656480 TGTGTAGCTCGCTAATGTATTTCA 58.344 37.500 0.00 0.00 0.00 2.69
2871 4419 6.280643 TGTGTAGCTCGCTAATGTATTTCAT 58.719 36.000 0.00 0.00 38.57 2.57
2872 4420 6.420903 TGTGTAGCTCGCTAATGTATTTCATC 59.579 38.462 0.00 0.00 35.48 2.92
2873 4421 6.420903 GTGTAGCTCGCTAATGTATTTCATCA 59.579 38.462 0.00 0.00 35.48 3.07
2874 4422 7.116948 GTGTAGCTCGCTAATGTATTTCATCAT 59.883 37.037 0.00 0.00 35.48 2.45
2875 4423 6.477669 AGCTCGCTAATGTATTTCATCATG 57.522 37.500 0.00 0.00 35.48 3.07
2876 4424 6.226052 AGCTCGCTAATGTATTTCATCATGA 58.774 36.000 0.00 0.00 35.48 3.07
2877 4425 6.707608 AGCTCGCTAATGTATTTCATCATGAA 59.292 34.615 0.00 0.00 35.48 2.57
2890 4438 7.731882 TTTCATCATGAAAATTTGCACACAT 57.268 28.000 10.55 0.00 42.72 3.21
2891 4439 6.713792 TCATCATGAAAATTTGCACACATG 57.286 33.333 0.00 4.47 37.18 3.21
2892 4440 6.456501 TCATCATGAAAATTTGCACACATGA 58.543 32.000 18.17 18.17 44.67 3.07
2893 4441 6.588373 TCATCATGAAAATTTGCACACATGAG 59.412 34.615 19.41 0.00 44.12 2.90
2894 4442 5.231702 TCATGAAAATTTGCACACATGAGG 58.768 37.500 0.00 0.00 38.99 3.86
2895 4443 4.669206 TGAAAATTTGCACACATGAGGT 57.331 36.364 0.00 0.00 0.00 3.85
2896 4444 5.781210 TGAAAATTTGCACACATGAGGTA 57.219 34.783 0.00 0.00 0.00 3.08
2897 4445 6.343716 TGAAAATTTGCACACATGAGGTAT 57.656 33.333 0.00 0.00 0.00 2.73
2898 4446 7.459795 TGAAAATTTGCACACATGAGGTATA 57.540 32.000 0.00 0.00 0.00 1.47
2899 4447 7.312154 TGAAAATTTGCACACATGAGGTATAC 58.688 34.615 0.00 0.00 0.00 1.47
2900 4448 5.484173 AATTTGCACACATGAGGTATACG 57.516 39.130 0.00 0.00 0.00 3.06
2901 4449 3.603158 TTGCACACATGAGGTATACGT 57.397 42.857 0.00 0.00 0.00 3.57
2902 4450 3.159353 TGCACACATGAGGTATACGTC 57.841 47.619 16.84 16.84 0.00 4.34
2903 4451 2.159156 TGCACACATGAGGTATACGTCC 60.159 50.000 19.95 6.09 0.00 4.79
2904 4452 2.727777 CACACATGAGGTATACGTCCG 58.272 52.381 19.95 14.30 0.00 4.79
2905 4453 2.098607 CACACATGAGGTATACGTCCGT 59.901 50.000 19.95 14.84 0.00 4.69
2906 4454 3.313249 CACACATGAGGTATACGTCCGTA 59.687 47.826 19.95 1.60 34.87 4.02
2907 4455 4.023450 CACACATGAGGTATACGTCCGTAT 60.023 45.833 19.95 15.73 43.04 3.06
2908 4456 4.023450 ACACATGAGGTATACGTCCGTATG 60.023 45.833 19.95 18.10 40.98 2.39
2909 4457 3.504906 ACATGAGGTATACGTCCGTATGG 59.495 47.826 19.95 0.00 40.98 2.74
2910 4458 3.213206 TGAGGTATACGTCCGTATGGT 57.787 47.619 19.95 6.41 40.98 3.55
2911 4459 4.350368 TGAGGTATACGTCCGTATGGTA 57.650 45.455 19.95 0.39 40.98 3.25
2912 4460 4.065088 TGAGGTATACGTCCGTATGGTAC 58.935 47.826 19.95 11.28 40.98 3.34
2913 4461 4.202357 TGAGGTATACGTCCGTATGGTACT 60.202 45.833 19.95 12.52 40.98 2.73
2914 4462 4.067896 AGGTATACGTCCGTATGGTACTG 58.932 47.826 19.58 0.00 40.98 2.74
2915 4463 3.815401 GGTATACGTCCGTATGGTACTGT 59.185 47.826 19.58 4.27 40.98 3.55
2916 4464 3.976793 ATACGTCCGTATGGTACTGTG 57.023 47.619 11.25 0.00 39.56 3.66
2917 4465 0.813184 ACGTCCGTATGGTACTGTGG 59.187 55.000 0.00 0.00 36.30 4.17
2918 4466 1.097232 CGTCCGTATGGTACTGTGGA 58.903 55.000 0.00 0.00 36.30 4.02
2919 4467 1.679680 CGTCCGTATGGTACTGTGGAT 59.320 52.381 0.00 0.00 36.30 3.41
2920 4468 2.880268 CGTCCGTATGGTACTGTGGATA 59.120 50.000 0.00 0.00 36.30 2.59
2921 4469 3.304257 CGTCCGTATGGTACTGTGGATAC 60.304 52.174 0.00 0.00 36.30 2.24
2922 4470 3.887716 GTCCGTATGGTACTGTGGATACT 59.112 47.826 0.00 0.00 36.30 2.12
2923 4471 4.340381 GTCCGTATGGTACTGTGGATACTT 59.660 45.833 0.00 0.00 36.30 2.24
2924 4472 4.957954 TCCGTATGGTACTGTGGATACTTT 59.042 41.667 0.00 0.00 36.30 2.66
2925 4473 5.422970 TCCGTATGGTACTGTGGATACTTTT 59.577 40.000 0.00 0.00 36.30 2.27
2926 4474 5.522460 CCGTATGGTACTGTGGATACTTTTG 59.478 44.000 0.00 0.00 37.61 2.44
2927 4475 6.334989 CGTATGGTACTGTGGATACTTTTGA 58.665 40.000 0.00 0.00 37.61 2.69
2928 4476 6.814644 CGTATGGTACTGTGGATACTTTTGAA 59.185 38.462 0.00 0.00 37.61 2.69
2929 4477 7.494625 CGTATGGTACTGTGGATACTTTTGAAT 59.505 37.037 0.00 0.00 37.61 2.57
2930 4478 7.865706 ATGGTACTGTGGATACTTTTGAATC 57.134 36.000 0.00 0.00 37.61 2.52
2931 4479 6.774673 TGGTACTGTGGATACTTTTGAATCA 58.225 36.000 0.00 0.00 37.61 2.57
2932 4480 6.653320 TGGTACTGTGGATACTTTTGAATCAC 59.347 38.462 0.00 0.00 37.61 3.06
2933 4481 6.879458 GGTACTGTGGATACTTTTGAATCACT 59.121 38.462 0.00 0.00 37.61 3.41
2934 4482 6.808008 ACTGTGGATACTTTTGAATCACTG 57.192 37.500 0.00 0.00 37.61 3.66
2935 4483 6.533730 ACTGTGGATACTTTTGAATCACTGA 58.466 36.000 0.00 0.00 37.61 3.41
2936 4484 6.998074 ACTGTGGATACTTTTGAATCACTGAA 59.002 34.615 0.00 0.00 37.61 3.02
2937 4485 7.502226 ACTGTGGATACTTTTGAATCACTGAAA 59.498 33.333 0.00 0.00 37.61 2.69
2938 4486 7.648142 TGTGGATACTTTTGAATCACTGAAAC 58.352 34.615 0.00 0.00 37.61 2.78
2939 4487 7.502226 TGTGGATACTTTTGAATCACTGAAACT 59.498 33.333 0.00 0.00 37.61 2.66
2940 4488 8.352942 GTGGATACTTTTGAATCACTGAAACTT 58.647 33.333 0.00 0.00 37.61 2.66
2941 4489 8.352201 TGGATACTTTTGAATCACTGAAACTTG 58.648 33.333 0.00 0.00 37.61 3.16
2942 4490 8.352942 GGATACTTTTGAATCACTGAAACTTGT 58.647 33.333 0.00 0.00 0.00 3.16
2945 4493 7.196331 ACTTTTGAATCACTGAAACTTGTAGC 58.804 34.615 0.00 0.00 0.00 3.58
2946 4494 5.689383 TTGAATCACTGAAACTTGTAGCC 57.311 39.130 0.00 0.00 0.00 3.93
2947 4495 4.072131 TGAATCACTGAAACTTGTAGCCC 58.928 43.478 0.00 0.00 0.00 5.19
2948 4496 2.163818 TCACTGAAACTTGTAGCCCG 57.836 50.000 0.00 0.00 0.00 6.13
2949 4497 1.689813 TCACTGAAACTTGTAGCCCGA 59.310 47.619 0.00 0.00 0.00 5.14
2950 4498 2.069273 CACTGAAACTTGTAGCCCGAG 58.931 52.381 0.00 0.00 0.00 4.63
2951 4499 1.079503 CTGAAACTTGTAGCCCGAGC 58.920 55.000 0.00 0.00 40.32 5.03
2952 4500 0.394938 TGAAACTTGTAGCCCGAGCA 59.605 50.000 0.00 0.00 43.56 4.26
2953 4501 0.796927 GAAACTTGTAGCCCGAGCAC 59.203 55.000 0.00 0.00 43.56 4.40
2954 4502 0.605589 AAACTTGTAGCCCGAGCACC 60.606 55.000 0.00 0.00 43.56 5.01
2955 4503 1.764571 AACTTGTAGCCCGAGCACCA 61.765 55.000 0.00 0.00 43.56 4.17
2956 4504 1.003839 CTTGTAGCCCGAGCACCAA 60.004 57.895 0.00 0.00 43.56 3.67
2957 4505 0.605319 CTTGTAGCCCGAGCACCAAA 60.605 55.000 0.00 0.00 43.56 3.28
2958 4506 0.179015 TTGTAGCCCGAGCACCAAAA 60.179 50.000 0.00 0.00 43.56 2.44
2959 4507 0.605319 TGTAGCCCGAGCACCAAAAG 60.605 55.000 0.00 0.00 43.56 2.27
2970 4518 1.798223 GCACCAAAAGGCGAAAATTCC 59.202 47.619 0.00 0.00 0.00 3.01
2979 4527 4.465632 AGGCGAAAATTCCCAAATAACC 57.534 40.909 0.00 0.00 0.00 2.85
3029 4580 7.493320 TCGTACAAAATCATGGACCTAATACAC 59.507 37.037 0.00 0.00 29.81 2.90
3030 4581 7.279090 CGTACAAAATCATGGACCTAATACACA 59.721 37.037 0.00 0.00 29.81 3.72
3031 4582 7.630242 ACAAAATCATGGACCTAATACACAG 57.370 36.000 0.00 0.00 0.00 3.66
3036 4587 6.806668 TCATGGACCTAATACACAGATGAA 57.193 37.500 0.00 0.00 0.00 2.57
3038 4589 7.445121 TCATGGACCTAATACACAGATGAATC 58.555 38.462 0.00 0.00 0.00 2.52
3042 4593 7.147497 TGGACCTAATACACAGATGAATCATGT 60.147 37.037 0.00 0.00 34.24 3.21
3049 4600 9.630098 AATACACAGATGAATCATGTGAAAAAC 57.370 29.630 24.40 0.00 45.67 2.43
3050 4601 7.281040 ACACAGATGAATCATGTGAAAAACT 57.719 32.000 24.40 0.66 45.67 2.66
3051 4602 7.143340 ACACAGATGAATCATGTGAAAAACTG 58.857 34.615 24.40 14.09 45.67 3.16
3052 4603 6.089016 CACAGATGAATCATGTGAAAAACTGC 59.911 38.462 24.40 0.00 45.67 4.40
3058 4609 6.766944 TGAATCATGTGAAAAACTGCCAAATT 59.233 30.769 0.00 0.00 0.00 1.82
3059 4610 6.790285 ATCATGTGAAAAACTGCCAAATTC 57.210 33.333 0.00 0.00 0.00 2.17
3061 4612 4.478206 TGTGAAAAACTGCCAAATTCCA 57.522 36.364 0.00 0.00 0.00 3.53
3063 4614 4.633565 TGTGAAAAACTGCCAAATTCCAAC 59.366 37.500 0.00 0.00 0.00 3.77
3064 4615 4.875536 GTGAAAAACTGCCAAATTCCAACT 59.124 37.500 0.00 0.00 0.00 3.16
3065 4616 5.006649 GTGAAAAACTGCCAAATTCCAACTC 59.993 40.000 0.00 0.00 0.00 3.01
3066 4617 3.369546 AAACTGCCAAATTCCAACTCG 57.630 42.857 0.00 0.00 0.00 4.18
3067 4618 2.270352 ACTGCCAAATTCCAACTCGA 57.730 45.000 0.00 0.00 0.00 4.04
3068 4619 2.795329 ACTGCCAAATTCCAACTCGAT 58.205 42.857 0.00 0.00 0.00 3.59
3069 4620 3.157087 ACTGCCAAATTCCAACTCGATT 58.843 40.909 0.00 0.00 0.00 3.34
3070 4621 3.191371 ACTGCCAAATTCCAACTCGATTC 59.809 43.478 0.00 0.00 0.00 2.52
3072 4623 4.584874 TGCCAAATTCCAACTCGATTCTA 58.415 39.130 0.00 0.00 0.00 2.10
3073 4624 5.007034 TGCCAAATTCCAACTCGATTCTAA 58.993 37.500 0.00 0.00 0.00 2.10
3075 4626 5.354234 GCCAAATTCCAACTCGATTCTAAGA 59.646 40.000 0.00 0.00 0.00 2.10
3078 4629 9.277783 CCAAATTCCAACTCGATTCTAAGATAT 57.722 33.333 0.00 0.00 0.00 1.63
3115 4676 2.812011 ACGGAACTACCACTGCATTTTC 59.188 45.455 0.00 0.00 38.90 2.29
3152 4716 1.339535 GCTTTCTTCCTCCTGGACCTG 60.340 57.143 0.00 0.00 43.06 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.696707 CCCCATCCATCAAATCCAACAG 59.303 50.000 0.00 0.00 0.00 3.16
1 2 2.314247 TCCCCATCCATCAAATCCAACA 59.686 45.455 0.00 0.00 0.00 3.33
71 73 1.113788 TGCTCCTAAATGGGCATTGC 58.886 50.000 0.00 0.00 37.19 3.56
116 118 0.957395 ATGCGAGCCACAGGAAAGTG 60.957 55.000 0.00 0.00 39.21 3.16
140 142 0.038801 GCAAGAAGAGCCCAAACAGC 60.039 55.000 0.00 0.00 0.00 4.40
173 175 4.922206 AGCTGAGAAATGGACCATAAACA 58.078 39.130 7.59 5.54 0.00 2.83
201 203 3.431912 TCATGACGACAAACCATTCTTCG 59.568 43.478 0.00 0.00 35.80 3.79
214 216 4.976731 GGTACATCACTACATCATGACGAC 59.023 45.833 0.00 0.00 0.00 4.34
215 217 4.642885 TGGTACATCACTACATCATGACGA 59.357 41.667 0.00 0.00 0.00 4.20
216 218 4.932146 TGGTACATCACTACATCATGACG 58.068 43.478 0.00 0.00 0.00 4.35
217 219 4.747108 GCTGGTACATCACTACATCATGAC 59.253 45.833 0.00 0.00 38.20 3.06
218 220 4.405358 TGCTGGTACATCACTACATCATGA 59.595 41.667 0.00 0.00 38.20 3.07
219 221 4.696455 TGCTGGTACATCACTACATCATG 58.304 43.478 0.00 0.00 38.20 3.07
249 759 5.368145 GCATATCACTCTTTACATGGTCCA 58.632 41.667 0.00 0.00 0.00 4.02
250 760 4.757149 GGCATATCACTCTTTACATGGTCC 59.243 45.833 0.00 0.00 0.00 4.46
263 773 1.298953 AGTGGGTTGGGCATATCACT 58.701 50.000 0.00 0.00 0.00 3.41
334 844 1.678101 GTATGGCATGGTTCTTGAGGC 59.322 52.381 10.98 0.00 0.00 4.70
336 846 5.587388 AAATGTATGGCATGGTTCTTGAG 57.413 39.130 10.98 0.00 37.96 3.02
371 881 5.895636 ATCAATTTGTTAAGATGCCACGA 57.104 34.783 0.00 0.00 0.00 4.35
372 882 6.585702 TGAAATCAATTTGTTAAGATGCCACG 59.414 34.615 0.00 0.00 0.00 4.94
412 922 4.989279 ATAGCTATGTTGGCCACAAAAG 57.011 40.909 3.88 10.27 39.50 2.27
414 924 5.949354 ACTTTATAGCTATGTTGGCCACAAA 59.051 36.000 16.77 4.66 39.50 2.83
470 980 4.106925 CCACCTCAGGGCAGCCTC 62.107 72.222 12.43 1.02 35.63 4.70
491 1001 3.245586 ACAAACATTAAGGATGCCTGGGA 60.246 43.478 0.00 0.00 39.47 4.37
501 1011 3.925913 CCCGCAATTCACAAACATTAAGG 59.074 43.478 0.00 0.00 0.00 2.69
506 1016 2.363680 TGTTCCCGCAATTCACAAACAT 59.636 40.909 0.00 0.00 0.00 2.71
520 1031 1.375013 CACCGTAACCCTGTTCCCG 60.375 63.158 0.00 0.00 0.00 5.14
522 1033 2.484742 AATCACCGTAACCCTGTTCC 57.515 50.000 0.00 0.00 0.00 3.62
534 1045 2.487762 AGGCAACAACATGTAATCACCG 59.512 45.455 0.00 0.00 41.41 4.94
536 1047 5.376854 AGAAGGCAACAACATGTAATCAC 57.623 39.130 0.00 0.00 41.41 3.06
629 1140 9.372369 GCAAGAAACATAGTACTAGTCTGAAAT 57.628 33.333 8.85 0.00 0.00 2.17
637 1148 8.204836 ACCCATTAGCAAGAAACATAGTACTAG 58.795 37.037 8.85 3.62 0.00 2.57
649 1160 5.772393 TCTTAGGAACCCATTAGCAAGAA 57.228 39.130 0.00 0.00 0.00 2.52
703 1223 2.561419 ACTCGTGCTACACCACACTAAT 59.439 45.455 0.00 0.00 35.47 1.73
720 1240 9.907576 GTCTAACATTCAATTTTATCTCACTCG 57.092 33.333 0.00 0.00 0.00 4.18
774 1373 8.128582 TGATCAACAAGATACAAGAAACACAAC 58.871 33.333 0.00 0.00 37.00 3.32
816 1425 9.435688 AAGCATGGGTTTAAAACTTCAATATTC 57.564 29.630 2.72 0.00 0.00 1.75
836 1445 8.752766 AATCAGAACACAGAAATTAAAGCATG 57.247 30.769 0.00 0.00 0.00 4.06
953 1564 0.038599 TCTTGGCACTGCATGTCCAT 59.961 50.000 2.82 0.00 35.34 3.41
971 1582 0.953960 CCCAACTAAGTGGCACGGTC 60.954 60.000 12.71 0.00 37.34 4.79
979 1590 4.345859 TTGTAGGACACCCAACTAAGTG 57.654 45.455 0.00 0.00 39.93 3.16
980 1591 4.263331 CCATTGTAGGACACCCAACTAAGT 60.263 45.833 0.00 0.00 33.88 2.24
994 1605 5.413309 AGACTCTCAAACTCCATTGTAGG 57.587 43.478 0.00 0.00 0.00 3.18
1006 1617 6.042093 TCAAAGGCTTCTCTTAGACTCTCAAA 59.958 38.462 0.00 0.00 30.23 2.69
1011 1622 4.500127 GGTCAAAGGCTTCTCTTAGACTC 58.500 47.826 0.00 0.00 30.23 3.36
1023 1634 1.134220 TCAACAACTCGGTCAAAGGCT 60.134 47.619 0.00 0.00 0.00 4.58
1065 1676 8.924511 TCTGATCAATAACTTCCTGAACTTTT 57.075 30.769 0.00 0.00 0.00 2.27
1173 1784 0.604578 TGGCCTTCAATTCTGCAAGC 59.395 50.000 3.32 0.00 0.00 4.01
1400 2011 1.237285 ACCGCACTCATGGACAAAGC 61.237 55.000 0.00 0.00 0.00 3.51
1446 2057 4.090761 TCCATACATCTCCTGAAATGGC 57.909 45.455 0.00 0.00 39.61 4.40
1619 2230 4.513442 AGTCCTCGCATATTGTAAAGCAA 58.487 39.130 0.00 0.00 41.89 3.91
1635 2246 4.703703 GGCACCAAGTGAGTCCTC 57.296 61.111 0.00 0.00 35.23 3.71
1746 2357 0.103026 TCTCCCAATGCGTCGATGAG 59.897 55.000 9.31 0.00 0.00 2.90
1788 2399 1.406614 CCTAAGAGGCTGCAGAACTGG 60.407 57.143 20.43 8.10 0.00 4.00
1819 2430 0.105039 GCTACGCTCAGTGGGCTATT 59.895 55.000 14.31 0.00 32.80 1.73
1863 2474 2.360801 TGTTAGCTTCAACAAGGTTGGC 59.639 45.455 9.03 5.89 40.85 4.52
1884 2495 0.037590 TCTTGGCAGCCATTACCGTT 59.962 50.000 17.09 0.00 31.53 4.44
2160 2771 8.822652 ATTTGATCTGGAAAAAGTGAAACATC 57.177 30.769 0.00 0.00 41.43 3.06
2205 2821 2.032924 GGGTGAAACAGAAACACGAAGG 59.967 50.000 0.00 0.00 39.98 3.46
2229 2845 9.695155 AGGTTATAATACAGGCAAAGTTATTGT 57.305 29.630 0.00 0.00 0.00 2.71
2363 3063 1.162698 TACAGGACTCGAACGACAGG 58.837 55.000 0.00 0.00 0.00 4.00
2372 3072 3.657015 ATCATGAGCATACAGGACTCG 57.343 47.619 0.09 0.00 33.58 4.18
2375 3075 7.279536 CACCAATATATCATGAGCATACAGGAC 59.720 40.741 17.73 0.00 33.58 3.85
2385 3085 9.668497 ATGACTTCATCACCAATATATCATGAG 57.332 33.333 0.09 0.00 41.24 2.90
2391 3091 9.104713 TCCTACATGACTTCATCACCAATATAT 57.895 33.333 0.00 0.00 41.24 0.86
2401 3101 8.682936 AATTTACCATCCTACATGACTTCATC 57.317 34.615 0.00 0.00 33.61 2.92
2404 3104 7.067494 AGCAAATTTACCATCCTACATGACTTC 59.933 37.037 0.00 0.00 0.00 3.01
2441 3141 3.138884 TGACTAAGCACAATCTGGCAA 57.861 42.857 0.00 0.00 0.00 4.52
2451 3151 4.434520 GGAGGAAGTACATGACTAAGCAC 58.565 47.826 0.00 0.00 37.44 4.40
2454 3154 5.578005 TTCGGAGGAAGTACATGACTAAG 57.422 43.478 0.00 0.00 37.44 2.18
2469 3169 5.753921 ACGCTCTTATATTTCTTTTCGGAGG 59.246 40.000 0.00 0.00 0.00 4.30
2472 3172 8.814235 TCTAAACGCTCTTATATTTCTTTTCGG 58.186 33.333 0.00 0.00 0.00 4.30
2480 3180 9.395707 CGTAGTGATCTAAACGCTCTTATATTT 57.604 33.333 0.00 0.00 0.00 1.40
2481 3181 7.537991 GCGTAGTGATCTAAACGCTCTTATATT 59.462 37.037 22.97 0.00 38.08 1.28
2482 3182 7.022384 GCGTAGTGATCTAAACGCTCTTATAT 58.978 38.462 22.97 0.00 38.08 0.86
2484 3184 5.213675 GCGTAGTGATCTAAACGCTCTTAT 58.786 41.667 22.97 0.00 38.08 1.73
2485 3185 4.595116 GCGTAGTGATCTAAACGCTCTTA 58.405 43.478 22.97 0.00 38.08 2.10
2486 3186 3.436496 GCGTAGTGATCTAAACGCTCTT 58.564 45.455 22.97 0.00 38.08 2.85
2488 3188 1.774085 CGCGTAGTGATCTAAACGCTC 59.226 52.381 25.41 8.69 43.07 5.03
2489 3189 1.399440 TCGCGTAGTGATCTAAACGCT 59.601 47.619 25.41 4.23 44.70 5.07
2490 3190 1.818850 TCGCGTAGTGATCTAAACGC 58.181 50.000 21.40 21.40 44.70 4.84
2501 3201 0.251354 TACTCCCTCTGTCGCGTAGT 59.749 55.000 5.77 1.13 0.00 2.73
2502 3202 1.376543 TTACTCCCTCTGTCGCGTAG 58.623 55.000 5.77 6.39 0.00 3.51
2503 3203 2.048444 ATTACTCCCTCTGTCGCGTA 57.952 50.000 5.77 0.00 0.00 4.42
2505 3205 3.114065 GTTTATTACTCCCTCTGTCGCG 58.886 50.000 0.00 0.00 0.00 5.87
2506 3206 3.864003 GTGTTTATTACTCCCTCTGTCGC 59.136 47.826 0.00 0.00 0.00 5.19
2507 3207 5.068234 TGTGTTTATTACTCCCTCTGTCG 57.932 43.478 0.00 0.00 0.00 4.35
2526 3252 9.730146 CATGATTTCAACGACAATTATTTTGTG 57.270 29.630 0.00 0.00 31.96 3.33
2527 3253 9.474920 ACATGATTTCAACGACAATTATTTTGT 57.525 25.926 0.00 0.00 34.97 2.83
2573 3299 6.518537 GCCCGTGTCTAATACTCCATCTAATT 60.519 42.308 0.00 0.00 0.00 1.40
2574 3300 5.047235 GCCCGTGTCTAATACTCCATCTAAT 60.047 44.000 0.00 0.00 0.00 1.73
2575 3301 4.280174 GCCCGTGTCTAATACTCCATCTAA 59.720 45.833 0.00 0.00 0.00 2.10
2578 3304 2.628657 AGCCCGTGTCTAATACTCCATC 59.371 50.000 0.00 0.00 0.00 3.51
2580 3306 1.754803 CAGCCCGTGTCTAATACTCCA 59.245 52.381 0.00 0.00 0.00 3.86
2581 3307 1.755380 ACAGCCCGTGTCTAATACTCC 59.245 52.381 0.00 0.00 31.90 3.85
2582 3308 3.521947 AACAGCCCGTGTCTAATACTC 57.478 47.619 0.00 0.00 39.03 2.59
2583 3309 3.975168 AAACAGCCCGTGTCTAATACT 57.025 42.857 0.00 0.00 39.03 2.12
2584 3310 6.484818 TTAAAAACAGCCCGTGTCTAATAC 57.515 37.500 0.00 0.00 39.03 1.89
2589 4137 3.751518 AGATTAAAAACAGCCCGTGTCT 58.248 40.909 0.00 0.00 39.03 3.41
2594 4142 3.673323 GCCTCAAGATTAAAAACAGCCCG 60.673 47.826 0.00 0.00 0.00 6.13
2597 4145 5.772521 TCAAGCCTCAAGATTAAAAACAGC 58.227 37.500 0.00 0.00 0.00 4.40
2600 4148 6.152379 CCACTCAAGCCTCAAGATTAAAAAC 58.848 40.000 0.00 0.00 0.00 2.43
2606 4154 1.005215 CCCCACTCAAGCCTCAAGATT 59.995 52.381 0.00 0.00 0.00 2.40
2608 4156 0.768221 ACCCCACTCAAGCCTCAAGA 60.768 55.000 0.00 0.00 0.00 3.02
2615 4163 2.890945 ACAAAACATACCCCACTCAAGC 59.109 45.455 0.00 0.00 0.00 4.01
2623 4171 3.088532 TCATGCTCACAAAACATACCCC 58.911 45.455 0.00 0.00 0.00 4.95
2649 4197 4.783242 CACTCATGGTTTCCTTGTTAACG 58.217 43.478 0.26 0.00 31.64 3.18
2657 4205 2.949447 ACTTTGCACTCATGGTTTCCT 58.051 42.857 0.00 0.00 0.00 3.36
2661 4209 4.942761 ATGAAACTTTGCACTCATGGTT 57.057 36.364 0.00 0.00 0.00 3.67
2663 4211 7.599621 TGATTTTATGAAACTTTGCACTCATGG 59.400 33.333 0.00 0.00 31.20 3.66
2667 4215 7.928908 TGTGATTTTATGAAACTTTGCACTC 57.071 32.000 0.00 0.00 0.00 3.51
2668 4216 8.891671 AATGTGATTTTATGAAACTTTGCACT 57.108 26.923 0.00 0.00 0.00 4.40
2669 4217 9.934190 AAAATGTGATTTTATGAAACTTTGCAC 57.066 25.926 0.00 0.00 40.44 4.57
2720 4268 7.502226 AGACATGTCTCTGTATGTTTGGAAAAA 59.498 33.333 22.89 0.00 37.63 1.94
2721 4269 6.998074 AGACATGTCTCTGTATGTTTGGAAAA 59.002 34.615 22.89 0.00 37.63 2.29
2722 4270 6.427853 CAGACATGTCTCTGTATGTTTGGAAA 59.572 38.462 25.58 0.00 37.63 3.13
2723 4271 5.934043 CAGACATGTCTCTGTATGTTTGGAA 59.066 40.000 25.58 0.00 37.63 3.53
2724 4272 5.012046 ACAGACATGTCTCTGTATGTTTGGA 59.988 40.000 25.58 0.00 46.38 3.53
2725 4273 5.240891 ACAGACATGTCTCTGTATGTTTGG 58.759 41.667 25.58 11.98 46.38 3.28
2726 4274 7.889589 TTACAGACATGTCTCTGTATGTTTG 57.110 36.000 25.58 13.29 46.38 2.93
2727 4275 8.902540 TTTTACAGACATGTCTCTGTATGTTT 57.097 30.769 25.58 0.00 46.38 2.83
2728 4276 9.507329 AATTTTACAGACATGTCTCTGTATGTT 57.493 29.630 25.58 15.98 46.38 2.71
2734 4282 8.724229 TCATGAAATTTTACAGACATGTCTCTG 58.276 33.333 25.58 18.23 43.06 3.35
2735 4283 8.853077 TCATGAAATTTTACAGACATGTCTCT 57.147 30.769 25.58 16.91 41.01 3.10
2736 4284 8.939929 TCTCATGAAATTTTACAGACATGTCTC 58.060 33.333 25.58 11.66 41.01 3.36
2737 4285 8.853077 TCTCATGAAATTTTACAGACATGTCT 57.147 30.769 22.89 22.89 41.01 3.41
2738 4286 9.897744 TTTCTCATGAAATTTTACAGACATGTC 57.102 29.630 18.47 18.47 37.75 3.06
2804 4352 9.999660 TGTGTACTGTTCACTATATAAAAACCA 57.000 29.630 16.72 0.00 36.83 3.67
2843 4391 6.978343 ATACATTAGCGAGCTACACAAAAA 57.022 33.333 4.05 0.00 0.00 1.94
2844 4392 6.978343 AATACATTAGCGAGCTACACAAAA 57.022 33.333 4.05 0.00 0.00 2.44
2845 4393 6.592220 TGAAATACATTAGCGAGCTACACAAA 59.408 34.615 4.05 0.00 0.00 2.83
2846 4394 6.103330 TGAAATACATTAGCGAGCTACACAA 58.897 36.000 4.05 0.00 0.00 3.33
2847 4395 5.656480 TGAAATACATTAGCGAGCTACACA 58.344 37.500 4.05 0.00 0.00 3.72
2848 4396 6.420903 TGATGAAATACATTAGCGAGCTACAC 59.579 38.462 4.05 0.00 39.56 2.90
2849 4397 6.512297 TGATGAAATACATTAGCGAGCTACA 58.488 36.000 4.05 0.00 39.56 2.74
2850 4398 7.329471 TCATGATGAAATACATTAGCGAGCTAC 59.671 37.037 4.05 0.00 39.56 3.58
2851 4399 7.378181 TCATGATGAAATACATTAGCGAGCTA 58.622 34.615 0.00 0.00 39.56 3.32
2852 4400 6.226052 TCATGATGAAATACATTAGCGAGCT 58.774 36.000 2.25 2.25 39.56 4.09
2853 4401 6.471976 TCATGATGAAATACATTAGCGAGC 57.528 37.500 0.00 0.00 39.56 5.03
2854 4402 9.888878 ATTTTCATGATGAAATACATTAGCGAG 57.111 29.630 20.04 0.00 44.75 5.03
2861 4409 9.438228 TGTGCAAATTTTCATGATGAAATACAT 57.562 25.926 20.04 9.20 44.75 2.29
2862 4410 8.710551 GTGTGCAAATTTTCATGATGAAATACA 58.289 29.630 20.04 14.55 44.75 2.29
2863 4411 8.710551 TGTGTGCAAATTTTCATGATGAAATAC 58.289 29.630 20.04 12.66 44.75 1.89
2864 4412 8.828688 TGTGTGCAAATTTTCATGATGAAATA 57.171 26.923 20.04 11.95 44.75 1.40
2865 4413 7.731882 TGTGTGCAAATTTTCATGATGAAAT 57.268 28.000 20.04 4.92 44.75 2.17
2866 4414 7.441458 TCATGTGTGCAAATTTTCATGATGAAA 59.559 29.630 16.04 16.04 43.84 2.69
2867 4415 6.929606 TCATGTGTGCAAATTTTCATGATGAA 59.070 30.769 3.29 3.29 37.38 2.57
2868 4416 6.456501 TCATGTGTGCAAATTTTCATGATGA 58.543 32.000 4.24 0.00 37.38 2.92
2869 4417 6.183360 CCTCATGTGTGCAAATTTTCATGATG 60.183 38.462 8.01 3.21 40.08 3.07
2870 4418 5.872617 CCTCATGTGTGCAAATTTTCATGAT 59.127 36.000 8.01 0.00 40.08 2.45
2871 4419 5.221481 ACCTCATGTGTGCAAATTTTCATGA 60.221 36.000 7.47 7.47 39.10 3.07
2872 4420 4.992319 ACCTCATGTGTGCAAATTTTCATG 59.008 37.500 0.00 0.00 35.47 3.07
2873 4421 5.217978 ACCTCATGTGTGCAAATTTTCAT 57.782 34.783 0.00 0.00 0.00 2.57
2874 4422 4.669206 ACCTCATGTGTGCAAATTTTCA 57.331 36.364 0.00 0.00 0.00 2.69
2875 4423 6.468956 CGTATACCTCATGTGTGCAAATTTTC 59.531 38.462 0.00 0.00 0.00 2.29
2876 4424 6.072175 ACGTATACCTCATGTGTGCAAATTTT 60.072 34.615 0.00 0.00 0.00 1.82
2877 4425 5.414454 ACGTATACCTCATGTGTGCAAATTT 59.586 36.000 0.00 0.00 0.00 1.82
2878 4426 4.941263 ACGTATACCTCATGTGTGCAAATT 59.059 37.500 0.00 0.00 0.00 1.82
2879 4427 4.513442 ACGTATACCTCATGTGTGCAAAT 58.487 39.130 0.00 0.00 0.00 2.32
2880 4428 3.930229 GACGTATACCTCATGTGTGCAAA 59.070 43.478 0.00 0.00 0.00 3.68
2881 4429 3.517602 GACGTATACCTCATGTGTGCAA 58.482 45.455 0.00 0.00 0.00 4.08
2882 4430 2.159156 GGACGTATACCTCATGTGTGCA 60.159 50.000 0.00 0.00 0.00 4.57
2883 4431 2.470821 GGACGTATACCTCATGTGTGC 58.529 52.381 0.00 0.00 0.00 4.57
2884 4432 2.098607 ACGGACGTATACCTCATGTGTG 59.901 50.000 0.00 0.00 0.00 3.82
2885 4433 2.372264 ACGGACGTATACCTCATGTGT 58.628 47.619 0.00 0.00 0.00 3.72
2886 4434 4.473199 CATACGGACGTATACCTCATGTG 58.527 47.826 15.98 0.30 39.07 3.21
2887 4435 3.504906 CCATACGGACGTATACCTCATGT 59.495 47.826 15.98 1.57 39.07 3.21
2888 4436 3.504906 ACCATACGGACGTATACCTCATG 59.495 47.826 15.98 5.91 39.07 3.07
2889 4437 3.759581 ACCATACGGACGTATACCTCAT 58.240 45.455 15.98 0.00 39.07 2.90
2890 4438 3.213206 ACCATACGGACGTATACCTCA 57.787 47.619 15.98 0.00 39.07 3.86
2891 4439 4.153117 CAGTACCATACGGACGTATACCTC 59.847 50.000 15.98 8.47 39.07 3.85
2892 4440 4.067896 CAGTACCATACGGACGTATACCT 58.932 47.826 15.98 7.67 39.07 3.08
2893 4441 3.815401 ACAGTACCATACGGACGTATACC 59.185 47.826 15.98 5.82 39.07 2.73
2894 4442 4.319766 CCACAGTACCATACGGACGTATAC 60.320 50.000 15.98 11.42 39.07 1.47
2895 4443 3.814842 CCACAGTACCATACGGACGTATA 59.185 47.826 15.98 0.00 39.07 1.47
2896 4444 2.620115 CCACAGTACCATACGGACGTAT 59.380 50.000 11.25 11.25 41.49 3.06
2897 4445 2.016318 CCACAGTACCATACGGACGTA 58.984 52.381 7.05 7.05 35.59 3.57
2898 4446 0.813184 CCACAGTACCATACGGACGT 59.187 55.000 1.98 1.98 35.59 4.34
2899 4447 1.097232 TCCACAGTACCATACGGACG 58.903 55.000 0.00 0.00 35.59 4.79
2900 4448 3.887716 AGTATCCACAGTACCATACGGAC 59.112 47.826 0.00 0.00 35.59 4.79
2901 4449 4.174704 AGTATCCACAGTACCATACGGA 57.825 45.455 0.00 0.00 35.59 4.69
2902 4450 4.931661 AAGTATCCACAGTACCATACGG 57.068 45.455 0.00 0.00 38.77 4.02
2903 4451 6.334989 TCAAAAGTATCCACAGTACCATACG 58.665 40.000 0.00 0.00 0.00 3.06
2904 4452 8.732746 ATTCAAAAGTATCCACAGTACCATAC 57.267 34.615 0.00 0.00 0.00 2.39
2905 4453 8.544622 TGATTCAAAAGTATCCACAGTACCATA 58.455 33.333 0.00 0.00 0.00 2.74
2906 4454 7.336931 GTGATTCAAAAGTATCCACAGTACCAT 59.663 37.037 0.00 0.00 0.00 3.55
2907 4455 6.653320 GTGATTCAAAAGTATCCACAGTACCA 59.347 38.462 0.00 0.00 0.00 3.25
2908 4456 6.879458 AGTGATTCAAAAGTATCCACAGTACC 59.121 38.462 0.00 0.00 0.00 3.34
2909 4457 7.602644 TCAGTGATTCAAAAGTATCCACAGTAC 59.397 37.037 0.00 0.00 0.00 2.73
2910 4458 7.676004 TCAGTGATTCAAAAGTATCCACAGTA 58.324 34.615 0.00 0.00 0.00 2.74
2911 4459 6.533730 TCAGTGATTCAAAAGTATCCACAGT 58.466 36.000 0.00 0.00 0.00 3.55
2912 4460 7.439157 TTCAGTGATTCAAAAGTATCCACAG 57.561 36.000 0.00 0.00 0.00 3.66
2913 4461 7.502226 AGTTTCAGTGATTCAAAAGTATCCACA 59.498 33.333 0.00 0.00 0.00 4.17
2914 4462 7.875971 AGTTTCAGTGATTCAAAAGTATCCAC 58.124 34.615 0.00 0.00 0.00 4.02
2915 4463 8.352201 CAAGTTTCAGTGATTCAAAAGTATCCA 58.648 33.333 0.00 0.00 0.00 3.41
2916 4464 8.352942 ACAAGTTTCAGTGATTCAAAAGTATCC 58.647 33.333 0.00 0.00 0.00 2.59
2919 4467 8.342634 GCTACAAGTTTCAGTGATTCAAAAGTA 58.657 33.333 0.00 0.00 0.00 2.24
2920 4468 7.196331 GCTACAAGTTTCAGTGATTCAAAAGT 58.804 34.615 0.00 0.00 0.00 2.66
2921 4469 6.638468 GGCTACAAGTTTCAGTGATTCAAAAG 59.362 38.462 0.00 0.00 0.00 2.27
2922 4470 6.460953 GGGCTACAAGTTTCAGTGATTCAAAA 60.461 38.462 0.00 0.00 0.00 2.44
2923 4471 5.009610 GGGCTACAAGTTTCAGTGATTCAAA 59.990 40.000 0.00 0.00 0.00 2.69
2924 4472 4.518970 GGGCTACAAGTTTCAGTGATTCAA 59.481 41.667 0.00 0.00 0.00 2.69
2925 4473 4.072131 GGGCTACAAGTTTCAGTGATTCA 58.928 43.478 0.00 0.00 0.00 2.57
2926 4474 3.125316 CGGGCTACAAGTTTCAGTGATTC 59.875 47.826 0.00 0.00 0.00 2.52
2927 4475 3.074412 CGGGCTACAAGTTTCAGTGATT 58.926 45.455 0.00 0.00 0.00 2.57
2928 4476 2.301870 TCGGGCTACAAGTTTCAGTGAT 59.698 45.455 0.00 0.00 0.00 3.06
2929 4477 1.689813 TCGGGCTACAAGTTTCAGTGA 59.310 47.619 0.00 0.00 0.00 3.41
2930 4478 2.069273 CTCGGGCTACAAGTTTCAGTG 58.931 52.381 0.00 0.00 0.00 3.66
2931 4479 1.608283 GCTCGGGCTACAAGTTTCAGT 60.608 52.381 0.00 0.00 35.22 3.41
2932 4480 1.079503 GCTCGGGCTACAAGTTTCAG 58.920 55.000 0.00 0.00 35.22 3.02
2933 4481 0.394938 TGCTCGGGCTACAAGTTTCA 59.605 50.000 9.62 0.00 39.59 2.69
2934 4482 0.796927 GTGCTCGGGCTACAAGTTTC 59.203 55.000 9.62 0.00 39.59 2.78
2935 4483 0.605589 GGTGCTCGGGCTACAAGTTT 60.606 55.000 9.62 0.00 39.59 2.66
2936 4484 1.003718 GGTGCTCGGGCTACAAGTT 60.004 57.895 9.62 0.00 39.59 2.66
2937 4485 1.764571 TTGGTGCTCGGGCTACAAGT 61.765 55.000 9.62 0.00 39.59 3.16
2938 4486 0.605319 TTTGGTGCTCGGGCTACAAG 60.605 55.000 9.62 0.00 39.59 3.16
2939 4487 0.179015 TTTTGGTGCTCGGGCTACAA 60.179 50.000 9.62 11.18 39.59 2.41
2940 4488 0.605319 CTTTTGGTGCTCGGGCTACA 60.605 55.000 9.62 4.27 39.59 2.74
2941 4489 1.305930 CCTTTTGGTGCTCGGGCTAC 61.306 60.000 9.62 4.92 39.59 3.58
2942 4490 1.002624 CCTTTTGGTGCTCGGGCTA 60.003 57.895 9.62 0.00 39.59 3.93
2943 4491 2.282462 CCTTTTGGTGCTCGGGCT 60.282 61.111 9.62 0.00 39.59 5.19
2944 4492 4.056125 GCCTTTTGGTGCTCGGGC 62.056 66.667 0.00 0.00 42.99 6.13
2945 4493 3.737172 CGCCTTTTGGTGCTCGGG 61.737 66.667 0.00 0.00 43.81 5.14
2952 4500 2.043227 TGGGAATTTTCGCCTTTTGGT 58.957 42.857 5.09 0.00 42.99 3.67
2953 4501 2.829741 TGGGAATTTTCGCCTTTTGG 57.170 45.000 5.09 0.00 44.18 3.28
2954 4502 6.348132 GGTTATTTGGGAATTTTCGCCTTTTG 60.348 38.462 5.09 0.00 39.17 2.44
2955 4503 5.703592 GGTTATTTGGGAATTTTCGCCTTTT 59.296 36.000 5.09 0.00 39.17 2.27
2956 4504 5.242434 GGTTATTTGGGAATTTTCGCCTTT 58.758 37.500 5.09 0.00 39.17 3.11
2957 4505 4.619628 CGGTTATTTGGGAATTTTCGCCTT 60.620 41.667 5.09 0.00 39.17 4.35
2958 4506 3.119280 CGGTTATTTGGGAATTTTCGCCT 60.119 43.478 5.09 0.00 39.17 5.52
2959 4507 3.119424 TCGGTTATTTGGGAATTTTCGCC 60.119 43.478 5.09 0.00 39.17 5.54
2997 4548 6.033966 GGTCCATGATTTTGTACGAAATTCC 58.966 40.000 19.81 10.41 29.75 3.01
3003 4554 7.493320 GTGTATTAGGTCCATGATTTTGTACGA 59.507 37.037 0.00 0.00 0.00 3.43
3004 4555 7.279090 TGTGTATTAGGTCCATGATTTTGTACG 59.721 37.037 0.00 0.00 0.00 3.67
3007 4558 7.402054 TCTGTGTATTAGGTCCATGATTTTGT 58.598 34.615 0.00 0.00 0.00 2.83
3029 4580 5.575606 GGCAGTTTTTCACATGATTCATCTG 59.424 40.000 0.00 0.00 0.00 2.90
3030 4581 5.244402 TGGCAGTTTTTCACATGATTCATCT 59.756 36.000 0.00 0.00 0.00 2.90
3031 4582 5.472148 TGGCAGTTTTTCACATGATTCATC 58.528 37.500 0.00 0.00 0.00 2.92
3036 4587 5.702209 GGAATTTGGCAGTTTTTCACATGAT 59.298 36.000 0.00 0.00 0.00 2.45
3038 4589 4.815308 TGGAATTTGGCAGTTTTTCACATG 59.185 37.500 0.00 0.00 0.00 3.21
3042 4593 5.096443 AGTTGGAATTTGGCAGTTTTTCA 57.904 34.783 0.00 0.00 0.00 2.69
3043 4594 4.209080 CGAGTTGGAATTTGGCAGTTTTTC 59.791 41.667 0.00 0.00 0.00 2.29
3049 4600 3.441572 AGAATCGAGTTGGAATTTGGCAG 59.558 43.478 0.00 0.00 0.00 4.85
3050 4601 3.420893 AGAATCGAGTTGGAATTTGGCA 58.579 40.909 0.00 0.00 0.00 4.92
3051 4602 5.354234 TCTTAGAATCGAGTTGGAATTTGGC 59.646 40.000 0.00 0.00 0.00 4.52
3052 4603 6.985188 TCTTAGAATCGAGTTGGAATTTGG 57.015 37.500 0.00 0.00 0.00 3.28
3058 4609 8.516234 GCTAGAATATCTTAGAATCGAGTTGGA 58.484 37.037 0.00 0.00 0.00 3.53
3059 4610 8.519526 AGCTAGAATATCTTAGAATCGAGTTGG 58.480 37.037 0.00 0.00 0.00 3.77
3063 4614 9.109393 AGCTAGCTAGAATATCTTAGAATCGAG 57.891 37.037 25.15 0.00 0.00 4.04
3083 4634 4.302548 TGGTAGTTCCGTAGCTAGCTAGC 61.303 52.174 33.96 33.96 43.66 3.42
3097 4658 2.492088 GGGGAAAATGCAGTGGTAGTTC 59.508 50.000 0.00 0.00 0.00 3.01
3115 4676 1.192428 AGCGTTCTGTTACTAGGGGG 58.808 55.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.