AutoCloner

Multiple sequence alignment - TraesCS7A01G366300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G366300	chr7A	100.000	3382	0	0	1	3382	539928207	539931588	0.000000e+00	6246
1	TraesCS7A01G366300	chr7A	92.308	1261	95	2	427	1686	539848162	539849421	0.000000e+00	1790
2	TraesCS7A01G366300	chr7A	82.344	1920	320	18	1	1911	539324847	539322938	0.000000e+00	1650
3	TraesCS7A01G366300	chr7A	92.407	777	52	6	1800	2570	539849421	539850196	0.000000e+00	1101
4	TraesCS7A01G366300	chr7A	79.646	452	82	8	1953	2399	539446518	539446072	1.960000e-82	316
5	TraesCS7A01G366300	chr7A	79.279	444	85	5	1952	2389	539322828	539322386	1.520000e-78	303
6	TraesCS7A01G366300	chr7B	94.892	2878	132	8	1	2866	481855928	481853054	0.000000e+00	4486
7	TraesCS7A01G366300	chr7B	91.509	3074	231	17	2	3057	482077336	482074275	0.000000e+00	4204
8	TraesCS7A01G366300	chr7B	82.793	1912	317	12	8	1913	482685499	482687404	0.000000e+00	1698
9	TraesCS7A01G366300	chr7B	85.086	523	45	14	2864	3374	481853020	481852519	1.400000e-138	503
10	TraesCS7A01G366300	chr7B	86.809	235	17	6	3120	3340	482074243	482074009	2.010000e-62	250
11	TraesCS7A01G366300	chr7D	95.242	2606	107	12	1	2598	459751676	459749080	0.000000e+00	4109
12	TraesCS7A01G366300	chr7D	90.739	2721	227	13	2	2718	459789096	459786397	0.000000e+00	3605
13	TraesCS7A01G366300	chr7D	82.821	1921	314	15	1	1913	460280846	460282758	0.000000e+00	1705
14	TraesCS7A01G366300	chr7D	85.147	680	56	21	2720	3374	459786333	459785674	0.000000e+00	654
15	TraesCS7A01G366300	chr7D	84.483	406	35	12	2984	3374	459749022	459748630	3.190000e-100	375
16	TraesCS7A01G366300	chr7D	80.963	436	78	4	1958	2389	460110166	460110600	1.160000e-89	340
17	TraesCS7A01G366300	chr7D	80.137	438	80	5	1952	2383	460282865	460283301	1.510000e-83	320
18	TraesCS7A01G366300	chr2B	79.773	1938	360	20	1	1913	798129389	798131319	0.000000e+00	1378
19	TraesCS7A01G366300	chr2D	79.657	1927	358	25	13	1913	638725298	638727216	0.000000e+00	1356
20	TraesCS7A01G366300	chr2D	79.587	1935	353	30	9	1913	638805438	638807360	0.000000e+00	1347
21	TraesCS7A01G366300	chr2A	78.387	1934	375	30	9	1913	764257310	764259229	0.000000e+00	1216

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G366300	chr7A	539928207	539931588	3381	False	6246.0	6246	100.0000	1	3382	1	chr7A.!!$F1	3381
1	TraesCS7A01G366300	chr7A	539848162	539850196	2034	False	1445.5	1790	92.3575	427	2570	2	chr7A.!!$F2	2143
2	TraesCS7A01G366300	chr7A	539322386	539324847	2461	True	976.5	1650	80.8115	1	2389	2	chr7A.!!$R2	2388
3	TraesCS7A01G366300	chr7B	481852519	481855928	3409	True	2494.5	4486	89.9890	1	3374	2	chr7B.!!$R1	3373
4	TraesCS7A01G366300	chr7B	482074009	482077336	3327	True	2227.0	4204	89.1590	2	3340	2	chr7B.!!$R2	3338
5	TraesCS7A01G366300	chr7B	482685499	482687404	1905	False	1698.0	1698	82.7930	8	1913	1	chr7B.!!$F1	1905
6	TraesCS7A01G366300	chr7D	459748630	459751676	3046	True	2242.0	4109	89.8625	1	3374	2	chr7D.!!$R1	3373
7	TraesCS7A01G366300	chr7D	459785674	459789096	3422	True	2129.5	3605	87.9430	2	3374	2	chr7D.!!$R2	3372
8	TraesCS7A01G366300	chr7D	460280846	460283301	2455	False	1012.5	1705	81.4790	1	2383	2	chr7D.!!$F2	2382
9	TraesCS7A01G366300	chr2B	798129389	798131319	1930	False	1378.0	1378	79.7730	1	1913	1	chr2B.!!$F1	1912
10	TraesCS7A01G366300	chr2D	638725298	638727216	1918	False	1356.0	1356	79.6570	13	1913	1	chr2D.!!$F1	1900
11	TraesCS7A01G366300	chr2D	638805438	638807360	1922	False	1347.0	1347	79.5870	9	1913	1	chr2D.!!$F2	1904
12	TraesCS7A01G366300	chr2A	764257310	764259229	1919	False	1216.0	1216	78.3870	9	1913	1	chr2A.!!$F1	1904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
143	144	1.032794	CTTCCGATGATCGACCTCCA	58.967	55.0	17.52	0.0	43.74	3.86	F
1491	1501	0.809385	CTGAGTGCAAGGCATTGAGG	59.191	55.0	16.56	0.0	41.91	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1596	1606	0.110486	GGAGCCAACTTTCCAGGTCA	59.890	55.0	0.00	0.0	33.55	4.02	R
2748	2927	0.176219	GCATGCCTGGCAATAGCAAA	59.824	50.0	27.24	0.0	43.62	3.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	129	1.963515	AGCCAACACAACCAATCTTCC	59.036	47.619	0.00	0.00	0.00	3.46
143	144	1.032794	CTTCCGATGATCGACCTCCA	58.967	55.000	17.52	0.00	43.74	3.86
246	247	4.104383	TGAAGCAGGAGATTGGTCTTTT	57.896	40.909	0.00	0.00	33.97	2.27
331	332	1.963515	GTGTCTTGCCCAAGTCCATTT	59.036	47.619	7.80	0.00	39.38	2.32
424	425	2.841442	ACAGTACTTGACAAGCCTCC	57.159	50.000	15.24	0.99	0.00	4.30
435	436	4.985538	TGACAAGCCTCCAACTTCTTTAT	58.014	39.130	0.00	0.00	0.00	1.40
742	743	3.136443	TCTGGACTTGTCTCACAACCAAT	59.864	43.478	0.61	0.00	34.94	3.16
914	915	3.615155	GGAAAATCCCTCACTCCTTCAG	58.385	50.000	0.00	0.00	0.00	3.02
923	924	3.071602	CCTCACTCCTTCAGAAGTTTGGA	59.928	47.826	9.41	0.00	0.00	3.53
994	995	8.768501	AATCCCTGACTTCTTTAAGTTCTTTT	57.231	30.769	0.00	0.00	46.09	2.27
1037	1038	5.932619	TTGTCCTTCAATAATCTCGAGGA	57.067	39.130	13.56	0.00	0.00	3.71
1095	1096	4.594491	AGCAAGGTTTTCATTCAAGGGAAT	59.406	37.500	0.00	0.00	44.51	3.01
1366	1373	3.605634	CCAGATAACATGGTCGGTTCAA	58.394	45.455	0.00	0.00	32.85	2.69
1377	1384	4.658063	TGGTCGGTTCAAGAAAATATGGT	58.342	39.130	0.00	0.00	0.00	3.55
1491	1501	0.809385	CTGAGTGCAAGGCATTGAGG	59.191	55.000	16.56	0.00	41.91	3.86
1817	1832	2.415491	GCAATTTCGGGTTGGCTAAGTC	60.415	50.000	0.00	0.00	0.00	3.01
2057	2152	9.149225	GTATTTAGCTATGGAGTCATCATCTTG	57.851	37.037	0.00	0.00	34.96	3.02
2068	2163	6.489361	GGAGTCATCATCTTGGAAATGCTAAT	59.511	38.462	0.00	0.00	0.00	1.73
2109	2204	3.696051	TGAGATGTTTAAAGATGGCCTGC	59.304	43.478	3.32	0.00	0.00	4.85
2171	2266	4.733077	TGAGGAGATTCTAGACCCTAGG	57.267	50.000	0.06	0.06	0.00	3.02
2246	2347	2.749621	GGAAACTCATCGAATGGTTGCT	59.250	45.455	0.00	0.00	0.00	3.91
2269	2370	4.952262	TGAACTGCATCATAAAGCTCAC	57.048	40.909	0.00	0.00	0.00	3.51
2296	2397	1.237285	GGATTGTTGTGCTCTGCGGT	61.237	55.000	0.00	0.00	0.00	5.68
2311	2412	1.621317	TGCGGTGACACCTAAAGATCA	59.379	47.619	22.14	5.98	35.66	2.92
2364	2465	7.029563	AGTTACCGCAATCAAAGAATCATTTC	58.970	34.615	0.00	0.00	0.00	2.17
2430	2532	8.568794	GCCTTGAAGAAGACTAGTTTACATTTT	58.431	33.333	0.00	0.00	0.00	1.82
2511	2616	0.839946	CCCTCCCCTGTATCTTGTGG	59.160	60.000	0.00	0.00	0.00	4.17
2539	2646	2.997952	TTACTTTGCCGCACCTCGCA	62.998	55.000	0.00	0.00	42.60	5.10
2570	2677	9.455847	CACTGTAAACCCTACGTATCTTAATAC	57.544	37.037	0.00	0.00	35.39	1.89
2584	2691	3.876914	TCTTAATACAATGAAGCAGCCCG	59.123	43.478	0.00	0.00	0.00	6.13
2627	2740	8.761575	AAAAAGGTCTATTGTGTATGCAAATG	57.238	30.769	0.00	0.00	31.63	2.32
2635	2748	4.502171	TGTGTATGCAAATGTCAACCAG	57.498	40.909	0.00	0.00	0.00	4.00
2744	2923	8.623310	TTTATTCCGTTTCTCTGTTTTTCAAC	57.377	30.769	0.00	0.00	0.00	3.18
2748	2927	5.182380	TCCGTTTCTCTGTTTTTCAACTTGT	59.818	36.000	0.00	0.00	33.58	3.16
2799	2980	5.416013	GCTCTCTGCTTAAAAGGGTGTATTT	59.584	40.000	0.00	0.00	38.95	1.40
2836	3017	8.788325	AAGATTAAGACGGTTAAAAGTAGCAT	57.212	30.769	0.00	0.00	0.00	3.79
2962	3183	3.309556	CCAGGTTAAATTGCCCCTAAGGA	60.310	47.826	0.00	0.00	38.24	3.36
2979	3200	1.003839	GAGGTGTGGCATGGTTCGA	60.004	57.895	0.00	0.00	0.00	3.71
3021	3245	4.026744	TCCAAAACCAGGTTGAATCACAA	58.973	39.130	5.30	0.00	36.02	3.33
3041	3273	0.451783	CCTAAGGTCGTTTGGCATGC	59.548	55.000	9.90	9.90	0.00	4.06
3071	3303	1.545841	GGGGTGGATTCAACTCAACC	58.454	55.000	0.00	0.00	37.53	3.77
3079	3312	3.305608	GGATTCAACTCAACCTGCTTTGG	60.306	47.826	0.00	0.00	0.00	3.28
3095	3328	3.181470	GCTTTGGTGGCTTTCCAAGTTTA	60.181	43.478	8.69	0.00	45.53	2.01
3096	3329	4.368315	CTTTGGTGGCTTTCCAAGTTTAC	58.632	43.478	8.69	0.00	45.53	2.01
3097	3330	1.950909	TGGTGGCTTTCCAAGTTTACG	59.049	47.619	0.00	0.00	45.53	3.18
3098	3331	2.223745	GGTGGCTTTCCAAGTTTACGA	58.776	47.619	0.00	0.00	45.53	3.43
3100	3333	3.119955	GGTGGCTTTCCAAGTTTACGATC	60.120	47.826	0.00	0.00	45.53	3.69
3102	3335	4.215613	GTGGCTTTCCAAGTTTACGATCTT	59.784	41.667	0.00	0.00	45.53	2.40
3103	3336	5.410439	GTGGCTTTCCAAGTTTACGATCTTA	59.590	40.000	0.00	0.00	45.53	2.10
3104	3337	6.093633	GTGGCTTTCCAAGTTTACGATCTTAT	59.906	38.462	0.00	0.00	45.53	1.73
3106	3339	7.990886	TGGCTTTCCAAGTTTACGATCTTATAT	59.009	33.333	0.00	0.00	39.99	0.86
3107	3340	8.837389	GGCTTTCCAAGTTTACGATCTTATATT	58.163	33.333	0.00	0.00	0.00	1.28
3111	3344	8.583810	TCCAAGTTTACGATCTTATATTTCGG	57.416	34.615	0.00	0.00	37.20	4.30
3112	3345	8.415553	TCCAAGTTTACGATCTTATATTTCGGA	58.584	33.333	0.00	0.00	37.20	4.55
3113	3346	8.700644	CCAAGTTTACGATCTTATATTTCGGAG	58.299	37.037	0.00	0.00	37.20	4.63
3114	3347	8.700644	CAAGTTTACGATCTTATATTTCGGAGG	58.299	37.037	0.00	0.00	37.20	4.30
3115	3348	7.376615	AGTTTACGATCTTATATTTCGGAGGG	58.623	38.462	0.00	0.00	37.20	4.30
3116	3349	7.232127	AGTTTACGATCTTATATTTCGGAGGGA	59.768	37.037	0.00	0.00	37.20	4.20
3117	3350	5.646577	ACGATCTTATATTTCGGAGGGAG	57.353	43.478	0.00	0.00	37.20	4.30
3118	3351	5.078256	ACGATCTTATATTTCGGAGGGAGT	58.922	41.667	0.00	0.00	37.20	3.85
3190	3427	2.814336	GCTCTGAAACCTTTGGTCGAAT	59.186	45.455	0.00	0.00	33.12	3.34
3208	3446	1.209621	ATAGGTGGTGGGCGTTATGT	58.790	50.000	0.00	0.00	0.00	2.29
3215	3453	1.066752	TGGGCGTTATGTCGATCCG	59.933	57.895	0.00	0.00	0.00	4.18
3216	3454	1.361271	GGGCGTTATGTCGATCCGA	59.639	57.895	0.00	0.00	0.00	4.55
3300	3538	2.097791	GTCGTCCGCTAGTCTTTCTCAT	59.902	50.000	0.00	0.00	0.00	2.90
3347	3594	4.211920	TCCTCAAAATCGGGTTCAAAGTT	58.788	39.130	0.00	0.00	0.00	2.66
3349	3596	5.828859	TCCTCAAAATCGGGTTCAAAGTTAA	59.171	36.000	0.00	0.00	0.00	2.01
3370	3617	2.235898	AGACTCAGGATTGAAGACAGCC	59.764	50.000	0.00	0.00	31.69	4.85
3374	3621	2.027745	TCAGGATTGAAGACAGCCAGAC	60.028	50.000	0.00	0.00	0.00	3.51
3375	3622	2.027377	CAGGATTGAAGACAGCCAGACT	60.027	50.000	0.00	0.00	0.00	3.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	129	1.950216	TCTCTTGGAGGTCGATCATCG	59.050	52.381	0.00	0.00	42.10	3.84
143	144	8.599624	AACAATACCATGGAATTGATTCTCTT	57.400	30.769	21.47	0.00	36.73	2.85
246	247	5.479724	TGTGCAATTGGTCAATGAGGATAAA	59.520	36.000	7.72	0.00	0.00	1.40
424	425	9.793252	CAAATTCTGGTCCATATAAAGAAGTTG	57.207	33.333	12.29	12.29	42.67	3.16
435	436	5.045213	TCCAGTAAGCAAATTCTGGTCCATA	60.045	40.000	8.11	0.00	45.18	2.74
619	620	2.028748	CCAACTTTTTGCAGCCTGCTAT	60.029	45.455	18.96	0.00	45.31	2.97
779	780	7.210174	GGAAATATTTAGTGGCCCAAGATTTC	58.790	38.462	17.53	17.53	32.53	2.17
914	915	6.824305	TCTCAATGATTCCTTCCAAACTTC	57.176	37.500	0.00	0.00	0.00	3.01
923	924	8.452138	AGATAGATCCATCTCAATGATTCCTT	57.548	34.615	0.00	0.00	38.32	3.36
994	995	7.766278	GGACAAATTGAGAAGCTTCATAGACTA	59.234	37.037	27.57	10.65	0.00	2.59
1095	1096	4.941263	GGAATGCTGGTACATAACTTCACA	59.059	41.667	0.00	0.00	38.20	3.58
1354	1361	5.261216	ACCATATTTTCTTGAACCGACCAT	58.739	37.500	0.00	0.00	0.00	3.55
1491	1501	3.305398	AGATTCCTGTGACGAGTGTTC	57.695	47.619	0.00	0.00	0.00	3.18
1594	1604	0.846693	AGCCAACTTTCCAGGTCACT	59.153	50.000	0.00	0.00	0.00	3.41
1596	1606	0.110486	GGAGCCAACTTTCCAGGTCA	59.890	55.000	0.00	0.00	33.55	4.02
1798	1813	2.443416	GGACTTAGCCAACCCGAAATT	58.557	47.619	0.00	0.00	0.00	1.82
1817	1832	4.692625	CCGAAGAATTATGACTATGCAGGG	59.307	45.833	0.00	0.00	0.00	4.45
2057	2152	4.023963	GGACGCTTTCCTATTAGCATTTCC	60.024	45.833	0.00	0.00	41.95	3.13
2068	2163	2.565391	TCATCAGTTGGACGCTTTCCTA	59.435	45.455	3.14	0.00	46.10	2.94
2109	2204	8.119226	TGATTTTTCAACAAATTTGTAAAGGCG	58.881	29.630	23.53	8.84	41.31	5.52
2171	2266	8.527810	CCTTCATCTCTATAACCTGGAACTATC	58.472	40.741	0.00	0.00	0.00	2.08
2246	2347	6.259387	CAGTGAGCTTTATGATGCAGTTCATA	59.741	38.462	6.01	6.01	37.51	2.15
2269	2370	1.884579	AGCACAACAATCCAAGCTCAG	59.115	47.619	0.00	0.00	0.00	3.35
2279	2380	0.534877	TCACCGCAGAGCACAACAAT	60.535	50.000	0.00	0.00	0.00	2.71
2296	2397	2.027192	GTGGGCTGATCTTTAGGTGTCA	60.027	50.000	0.00	0.00	0.00	3.58
2311	2412	1.771565	TACGTGCTGTATAGTGGGCT	58.228	50.000	0.00	0.00	0.00	5.19
2430	2532	8.795842	TTGGACAAAGAAGTACTTAGTCAAAA	57.204	30.769	21.43	15.58	37.93	2.44
2433	2535	7.497909	CCTTTTGGACAAAGAAGTACTTAGTCA	59.502	37.037	21.43	11.52	44.07	3.41
2511	2616	4.260051	GGTGCGGCAAAGTAAAAGAAAAAC	60.260	41.667	3.23	0.00	0.00	2.43
2539	2646	1.001633	CGTAGGGTTTACAGTGGTGCT	59.998	52.381	0.00	0.00	0.00	4.40
2570	2677	2.753043	AGCCGGGCTGCTTCATTG	60.753	61.111	23.19	0.00	38.85	2.82
2584	2691	1.531739	TTTTGGGGACGAATGCAGCC	61.532	55.000	0.00	0.00	32.53	4.85
2608	2719	6.747280	GGTTGACATTTGCATACACAATAGAC	59.253	38.462	0.00	0.00	0.00	2.59
2627	2740	3.133003	TCCATAGAGCTAAGCTGGTTGAC	59.867	47.826	1.72	0.00	39.88	3.18
2635	2748	7.360776	GCTGAACATTATTCCATAGAGCTAAGC	60.361	40.741	0.00	0.00	0.00	3.09
2744	2923	1.273048	TGCCTGGCAATAGCAAACAAG	59.727	47.619	21.08	0.00	44.61	3.16
2748	2927	0.176219	GCATGCCTGGCAATAGCAAA	59.824	50.000	27.24	0.00	43.62	3.68
2799	2980	9.715121	AACCGTCTTAATCTTCATGTTAAGTAA	57.285	29.630	11.29	0.80	38.46	2.24
2836	3017	6.323225	GGACTTACTACCTTTATCTACTGCCA	59.677	42.308	0.00	0.00	0.00	4.92
2919	3136	7.597369	ACCTGGTTTTTCAATTATTAAAGACGC	59.403	33.333	0.00	0.00	0.00	5.19
2938	3159	2.713828	AGGGGCAATTTAACCTGGTT	57.286	45.000	17.44	17.44	30.71	3.67
2962	3183	1.302511	GTCGAACCATGCCACACCT	60.303	57.895	0.00	0.00	0.00	4.00
3021	3245	1.821216	CATGCCAAACGACCTTAGGT	58.179	50.000	2.34	2.34	39.44	3.08
3041	3273	2.124507	ATCCACCCCGTCAACACTGG	62.125	60.000	0.00	0.00	0.00	4.00
3071	3303	0.752054	TTGGAAAGCCACCAAAGCAG	59.248	50.000	0.00	0.00	45.94	4.24
3095	3328	5.078256	ACTCCCTCCGAAATATAAGATCGT	58.922	41.667	0.00	0.00	34.90	3.73
3096	3329	5.646577	ACTCCCTCCGAAATATAAGATCG	57.353	43.478	0.00	0.00	36.39	3.69
3097	3330	7.463961	TGTACTCCCTCCGAAATATAAGATC	57.536	40.000	0.00	0.00	0.00	2.75
3098	3331	7.289317	TGTTGTACTCCCTCCGAAATATAAGAT	59.711	37.037	0.00	0.00	0.00	2.40
3100	3333	6.812998	TGTTGTACTCCCTCCGAAATATAAG	58.187	40.000	0.00	0.00	0.00	1.73
3102	3335	6.989155	ATGTTGTACTCCCTCCGAAATATA	57.011	37.500	0.00	0.00	0.00	0.86
3103	3336	5.888982	ATGTTGTACTCCCTCCGAAATAT	57.111	39.130	0.00	0.00	0.00	1.28
3104	3337	6.407299	GGTTATGTTGTACTCCCTCCGAAATA	60.407	42.308	0.00	0.00	0.00	1.40
3106	3339	4.322953	GGTTATGTTGTACTCCCTCCGAAA	60.323	45.833	0.00	0.00	0.00	3.46
3107	3340	3.196254	GGTTATGTTGTACTCCCTCCGAA	59.804	47.826	0.00	0.00	0.00	4.30
3108	3341	2.762327	GGTTATGTTGTACTCCCTCCGA	59.238	50.000	0.00	0.00	0.00	4.55
3109	3342	2.764572	AGGTTATGTTGTACTCCCTCCG	59.235	50.000	0.00	0.00	0.00	4.63
3110	3343	4.838904	AAGGTTATGTTGTACTCCCTCC	57.161	45.455	0.00	0.00	0.00	4.30
3111	3344	8.803397	AAAATAAGGTTATGTTGTACTCCCTC	57.197	34.615	0.00	0.00	0.00	4.30
3112	3345	8.387813	TGAAAATAAGGTTATGTTGTACTCCCT	58.612	33.333	0.00	0.00	0.00	4.20
3113	3346	8.456471	GTGAAAATAAGGTTATGTTGTACTCCC	58.544	37.037	0.00	0.00	0.00	4.30
3114	3347	9.227777	AGTGAAAATAAGGTTATGTTGTACTCC	57.772	33.333	0.00	0.00	0.00	3.85
3116	3349	9.787435	TCAGTGAAAATAAGGTTATGTTGTACT	57.213	29.630	0.00	0.00	0.00	2.73
3117	3350	9.821662	GTCAGTGAAAATAAGGTTATGTTGTAC	57.178	33.333	0.00	0.00	0.00	2.90
3118	3351	9.005777	GGTCAGTGAAAATAAGGTTATGTTGTA	57.994	33.333	0.00	0.00	0.00	2.41
3190	3427	0.538118	GACATAACGCCCACCACCTA	59.462	55.000	0.00	0.00	0.00	3.08
3224	3462	4.373116	GCAGGTCCAACGGCGAGA	62.373	66.667	16.62	4.14	0.00	4.04
3283	3521	2.427453	GACCATGAGAAAGACTAGCGGA	59.573	50.000	0.00	0.00	0.00	5.54
3286	3524	2.427453	TCGGACCATGAGAAAGACTAGC	59.573	50.000	0.00	0.00	0.00	3.42
3289	3527	2.099921	CGATCGGACCATGAGAAAGACT	59.900	50.000	7.38	0.00	0.00	3.24
3300	3538	0.668535	CTAGATGTGCGATCGGACCA	59.331	55.000	32.61	22.02	35.53	4.02
3347	3594	4.081420	GGCTGTCTTCAATCCTGAGTCTTA	60.081	45.833	0.00	0.00	31.69	2.10
3349	3596	2.235898	GGCTGTCTTCAATCCTGAGTCT	59.764	50.000	0.00	0.00	31.69	3.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.