Multiple sequence alignment - TraesCS7A01G365700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G365700 chr7A 100.000 3430 0 0 1 3430 539650800 539654229 0.000000e+00 6335.0
1 TraesCS7A01G365700 chr7A 89.062 128 11 3 121 245 107159703 107159830 4.580000e-34 156.0
2 TraesCS7A01G365700 chr7D 94.286 2485 87 20 352 2809 459874408 459871952 0.000000e+00 3751.0
3 TraesCS7A01G365700 chr7D 78.846 312 36 22 2812 3101 109016491 109016794 2.100000e-42 183.0
4 TraesCS7A01G365700 chr7D 75.137 366 77 11 2071 2429 47910871 47911229 3.540000e-35 159.0
5 TraesCS7A01G365700 chr7B 95.078 2296 76 14 524 2809 482176637 482174369 0.000000e+00 3579.0
6 TraesCS7A01G365700 chr7B 86.476 525 50 12 2920 3427 63627247 63627767 1.080000e-154 556.0
7 TraesCS7A01G365700 chr7B 81.579 152 17 6 2955 3096 63632275 63632425 7.780000e-22 115.0
8 TraesCS7A01G365700 chr7B 93.182 44 1 2 2808 2850 63627136 63627178 2.860000e-06 63.9
9 TraesCS7A01G365700 chr7B 97.059 34 1 0 2817 2850 63632131 63632164 1.330000e-04 58.4
10 TraesCS7A01G365700 chr6B 86.907 527 48 14 2921 3430 716104857 716104335 3.840000e-159 571.0
11 TraesCS7A01G365700 chr6B 75.524 715 154 17 1268 1971 280049695 280048991 7.100000e-87 331.0
12 TraesCS7A01G365700 chr6B 95.349 43 2 0 212 254 124483092 124483050 6.140000e-08 69.4
13 TraesCS7A01G365700 chr1D 88.119 404 42 6 3029 3430 484721588 484721189 3.100000e-130 475.0
14 TraesCS7A01G365700 chr1D 94.393 107 6 0 122 228 466492028 466492134 7.620000e-37 165.0
15 TraesCS7A01G365700 chr1D 80.645 186 36 0 3203 3388 24583860 24583675 9.920000e-31 145.0
16 TraesCS7A01G365700 chr5A 87.624 404 34 6 3029 3430 544456529 544456918 4.040000e-124 455.0
17 TraesCS7A01G365700 chr5A 97.500 40 1 0 212 251 171169197 171169158 6.140000e-08 69.4
18 TraesCS7A01G365700 chr6D 86.650 397 46 7 3037 3430 19623808 19623416 1.890000e-117 433.0
19 TraesCS7A01G365700 chr6D 76.331 714 150 15 1268 1971 157167881 157167177 7.000000e-97 364.0
20 TraesCS7A01G365700 chr6D 92.800 125 9 0 121 245 6557035 6557159 7.560000e-42 182.0
21 TraesCS7A01G365700 chr6D 92.661 109 7 1 121 228 10897202 10897310 4.580000e-34 156.0
22 TraesCS7A01G365700 chr3A 83.210 405 65 3 3027 3430 142956430 142956028 5.410000e-98 368.0
23 TraesCS7A01G365700 chr3A 85.526 304 21 13 2817 3097 31787287 31787590 2.590000e-76 296.0
24 TraesCS7A01G365700 chr6A 75.770 714 154 16 1268 1971 215528185 215528889 3.280000e-90 342.0
25 TraesCS7A01G365700 chr3B 88.382 241 22 5 2863 3097 39140238 39140478 5.600000e-73 285.0
26 TraesCS7A01G365700 chr4D 83.550 231 38 0 3200 3430 76233207 76233437 2.070000e-52 217.0
27 TraesCS7A01G365700 chr4D 82.286 175 27 4 3034 3206 76199495 76199667 7.670000e-32 148.0
28 TraesCS7A01G365700 chr1B 85.075 201 23 4 3237 3430 674871821 674871621 7.510000e-47 198.0
29 TraesCS7A01G365700 chr1B 91.525 118 10 0 121 238 654243909 654243792 2.740000e-36 163.0
30 TraesCS7A01G365700 chr1B 89.344 122 12 1 126 246 508509547 508509668 5.930000e-33 152.0
31 TraesCS7A01G365700 chr3D 90.400 125 12 0 121 245 270462257 270462381 7.620000e-37 165.0
32 TraesCS7A01G365700 chrUn 93.519 108 7 0 121 228 258350269 258350376 9.850000e-36 161.0
33 TraesCS7A01G365700 chr5B 89.600 125 13 0 121 245 681537979 681538103 3.540000e-35 159.0
34 TraesCS7A01G365700 chr5B 88.889 63 5 2 340 401 262058109 262058048 3.670000e-10 76.8
35 TraesCS7A01G365700 chr4A 87.500 120 14 1 1 120 313205163 313205045 1.660000e-28 137.0
36 TraesCS7A01G365700 chr2D 75.000 316 56 14 3073 3370 623445558 623445248 1.290000e-24 124.0
37 TraesCS7A01G365700 chr5D 81.538 130 21 2 294 420 486291775 486291904 1.680000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G365700 chr7A 539650800 539654229 3429 False 6335.00 6335 100.000 1 3430 1 chr7A.!!$F2 3429
1 TraesCS7A01G365700 chr7D 459871952 459874408 2456 True 3751.00 3751 94.286 352 2809 1 chr7D.!!$R1 2457
2 TraesCS7A01G365700 chr7B 482174369 482176637 2268 True 3579.00 3579 95.078 524 2809 1 chr7B.!!$R1 2285
3 TraesCS7A01G365700 chr7B 63627136 63627767 631 False 309.95 556 89.829 2808 3427 2 chr7B.!!$F1 619
4 TraesCS7A01G365700 chr6B 716104335 716104857 522 True 571.00 571 86.907 2921 3430 1 chr6B.!!$R3 509
5 TraesCS7A01G365700 chr6B 280048991 280049695 704 True 331.00 331 75.524 1268 1971 1 chr6B.!!$R2 703
6 TraesCS7A01G365700 chr6D 157167177 157167881 704 True 364.00 364 76.331 1268 1971 1 chr6D.!!$R2 703
7 TraesCS7A01G365700 chr6A 215528185 215528889 704 False 342.00 342 75.770 1268 1971 1 chr6A.!!$F1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.029035 CTGTAGCGCCGTAGTAGTGG 59.971 60.0 2.29 0.00 0.00 4.00 F
292 293 0.042535 CGCGATTTGTTGTCACACGT 60.043 50.0 0.00 0.00 30.32 4.49 F
439 440 0.249741 AAGCCACGTTAGCGACTTGT 60.250 50.0 5.81 0.00 42.00 3.16 F
1953 1978 0.685097 TCAACCACTTCGGAAGAGGG 59.315 55.0 29.55 25.86 42.74 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1882 0.306533 GCATGACGTCGTTGTGGTTT 59.693 50.000 7.76 0.0 0.00 3.27 R
2235 2260 0.471211 ACCCAGTTCTTCCACTCCGA 60.471 55.000 0.00 0.0 0.00 4.55 R
2339 2364 3.740128 CTTGGGCGGGATGAGGTCG 62.740 68.421 0.00 0.0 0.00 4.79 R
2850 2885 0.110688 CACGCCAAGTGTCAATGACG 60.111 55.000 9.00 0.0 45.51 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.492090 AGCAGTCGTCGCTGGATC 59.508 61.111 15.29 0.00 38.60 3.36
18 19 2.049185 AGCAGTCGTCGCTGGATCT 61.049 57.895 15.29 4.85 38.60 2.75
19 20 1.875813 GCAGTCGTCGCTGGATCTG 60.876 63.158 15.29 6.12 37.00 2.90
20 21 1.226802 CAGTCGTCGCTGGATCTGG 60.227 63.158 8.30 0.00 33.11 3.86
21 22 1.679305 AGTCGTCGCTGGATCTGGT 60.679 57.895 0.00 0.00 0.00 4.00
22 23 1.226717 GTCGTCGCTGGATCTGGTC 60.227 63.158 0.00 0.00 0.00 4.02
23 24 1.378646 TCGTCGCTGGATCTGGTCT 60.379 57.895 0.00 0.00 0.00 3.85
24 25 1.226802 CGTCGCTGGATCTGGTCTG 60.227 63.158 0.00 0.00 0.00 3.51
25 26 1.520342 GTCGCTGGATCTGGTCTGC 60.520 63.158 0.00 0.00 0.00 4.26
26 27 2.202987 CGCTGGATCTGGTCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
27 28 2.202987 GCTGGATCTGGTCTGCCG 60.203 66.667 0.00 0.00 37.67 5.69
28 29 2.503061 CTGGATCTGGTCTGCCGG 59.497 66.667 0.00 0.00 42.59 6.13
29 30 2.284625 TGGATCTGGTCTGCCGGT 60.285 61.111 1.90 0.00 41.89 5.28
30 31 2.187946 GGATCTGGTCTGCCGGTG 59.812 66.667 1.90 0.00 41.89 4.94
31 32 2.512515 GATCTGGTCTGCCGGTGC 60.513 66.667 1.90 0.00 41.89 5.01
32 33 4.101448 ATCTGGTCTGCCGGTGCC 62.101 66.667 1.90 0.68 41.89 5.01
36 37 4.660938 GGTCTGCCGGTGCCCTTT 62.661 66.667 1.90 0.00 36.33 3.11
37 38 3.056328 GTCTGCCGGTGCCCTTTC 61.056 66.667 1.90 0.00 36.33 2.62
38 39 4.697756 TCTGCCGGTGCCCTTTCG 62.698 66.667 1.90 0.00 36.33 3.46
46 47 4.697756 TGCCCTTTCGCACCTCCG 62.698 66.667 0.00 0.00 32.62 4.63
64 65 4.778143 GCGACCCCTGCCGTCATT 62.778 66.667 0.00 0.00 0.00 2.57
65 66 2.819595 CGACCCCTGCCGTCATTG 60.820 66.667 0.00 0.00 0.00 2.82
66 67 2.438434 GACCCCTGCCGTCATTGG 60.438 66.667 0.00 0.00 0.00 3.16
67 68 2.933287 ACCCCTGCCGTCATTGGA 60.933 61.111 0.00 0.00 0.00 3.53
68 69 2.270874 GACCCCTGCCGTCATTGGAT 62.271 60.000 0.00 0.00 0.00 3.41
69 70 1.526917 CCCCTGCCGTCATTGGATC 60.527 63.158 0.00 0.00 0.00 3.36
70 71 1.889105 CCCTGCCGTCATTGGATCG 60.889 63.158 0.00 0.00 0.00 3.69
71 72 1.143838 CCTGCCGTCATTGGATCGA 59.856 57.895 0.00 0.00 0.00 3.59
72 73 0.461870 CCTGCCGTCATTGGATCGAA 60.462 55.000 0.00 0.00 0.00 3.71
73 74 0.652592 CTGCCGTCATTGGATCGAAC 59.347 55.000 0.00 0.00 0.00 3.95
74 75 0.036858 TGCCGTCATTGGATCGAACA 60.037 50.000 0.00 0.00 0.00 3.18
75 76 1.083489 GCCGTCATTGGATCGAACAA 58.917 50.000 8.14 8.14 0.00 2.83
76 77 1.670811 GCCGTCATTGGATCGAACAAT 59.329 47.619 11.57 11.57 39.00 2.71
77 78 2.097466 GCCGTCATTGGATCGAACAATT 59.903 45.455 13.95 0.98 36.47 2.32
78 79 3.683989 CCGTCATTGGATCGAACAATTG 58.316 45.455 13.95 3.24 36.47 2.32
79 80 3.100817 CGTCATTGGATCGAACAATTGC 58.899 45.455 13.95 9.81 36.47 3.56
80 81 3.181507 CGTCATTGGATCGAACAATTGCT 60.182 43.478 13.95 0.00 36.47 3.91
81 82 4.100529 GTCATTGGATCGAACAATTGCTG 58.899 43.478 13.95 6.96 36.47 4.41
82 83 2.634982 TTGGATCGAACAATTGCTGC 57.365 45.000 5.05 0.00 0.00 5.25
83 84 0.810648 TGGATCGAACAATTGCTGCC 59.189 50.000 5.05 0.00 0.00 4.85
84 85 0.810648 GGATCGAACAATTGCTGCCA 59.189 50.000 5.05 0.00 0.00 4.92
85 86 1.406539 GGATCGAACAATTGCTGCCAT 59.593 47.619 5.05 0.00 0.00 4.40
86 87 2.159198 GGATCGAACAATTGCTGCCATT 60.159 45.455 5.05 0.00 0.00 3.16
87 88 3.066621 GGATCGAACAATTGCTGCCATTA 59.933 43.478 5.05 0.00 0.00 1.90
88 89 4.439974 GGATCGAACAATTGCTGCCATTAA 60.440 41.667 5.05 0.00 0.00 1.40
89 90 3.832276 TCGAACAATTGCTGCCATTAAC 58.168 40.909 5.05 0.00 0.00 2.01
90 91 3.254411 TCGAACAATTGCTGCCATTAACA 59.746 39.130 5.05 0.00 0.00 2.41
91 92 3.609373 CGAACAATTGCTGCCATTAACAG 59.391 43.478 5.05 0.00 38.22 3.16
98 99 1.917273 CTGCCATTAACAGCATGCAC 58.083 50.000 21.98 0.00 42.53 4.57
99 100 0.170784 TGCCATTAACAGCATGCACG 59.829 50.000 21.98 13.14 42.53 5.34
100 101 0.526096 GCCATTAACAGCATGCACGG 60.526 55.000 21.98 11.43 42.53 4.94
101 102 0.101040 CCATTAACAGCATGCACGGG 59.899 55.000 21.98 8.76 42.53 5.28
102 103 1.093972 CATTAACAGCATGCACGGGA 58.906 50.000 21.98 2.81 42.53 5.14
103 104 1.677576 CATTAACAGCATGCACGGGAT 59.322 47.619 21.98 5.27 42.53 3.85
104 105 1.378531 TTAACAGCATGCACGGGATC 58.621 50.000 21.98 0.00 42.53 3.36
105 106 0.809636 TAACAGCATGCACGGGATCG 60.810 55.000 21.98 0.00 42.53 3.69
106 107 2.202919 CAGCATGCACGGGATCGA 60.203 61.111 21.98 0.00 40.11 3.59
107 108 2.107750 AGCATGCACGGGATCGAG 59.892 61.111 21.98 0.00 40.11 4.04
108 109 2.106938 GCATGCACGGGATCGAGA 59.893 61.111 14.21 0.00 40.11 4.04
109 110 1.521457 GCATGCACGGGATCGAGAA 60.521 57.895 14.21 0.00 40.11 2.87
110 111 0.882042 GCATGCACGGGATCGAGAAT 60.882 55.000 14.21 0.00 40.11 2.40
111 112 1.586422 CATGCACGGGATCGAGAATT 58.414 50.000 0.00 0.00 40.11 2.17
112 113 1.942657 CATGCACGGGATCGAGAATTT 59.057 47.619 0.00 0.00 40.11 1.82
113 114 2.107950 TGCACGGGATCGAGAATTTT 57.892 45.000 0.00 0.00 40.11 1.82
114 115 2.432444 TGCACGGGATCGAGAATTTTT 58.568 42.857 0.00 0.00 40.11 1.94
130 131 3.009612 TTTTTGTTCCCGCGCTACT 57.990 47.368 5.56 0.00 0.00 2.57
131 132 2.166821 TTTTTGTTCCCGCGCTACTA 57.833 45.000 5.56 0.00 0.00 1.82
132 133 1.431496 TTTTGTTCCCGCGCTACTAC 58.569 50.000 5.56 0.00 0.00 2.73
133 134 0.604578 TTTGTTCCCGCGCTACTACT 59.395 50.000 5.56 0.00 0.00 2.57
134 135 1.462616 TTGTTCCCGCGCTACTACTA 58.537 50.000 5.56 0.00 0.00 1.82
135 136 1.462616 TGTTCCCGCGCTACTACTAA 58.537 50.000 5.56 0.00 0.00 2.24
136 137 1.133025 TGTTCCCGCGCTACTACTAAC 59.867 52.381 5.56 0.94 0.00 2.34
137 138 1.133025 GTTCCCGCGCTACTACTAACA 59.867 52.381 5.56 0.00 0.00 2.41
138 139 1.019673 TCCCGCGCTACTACTAACAG 58.980 55.000 5.56 0.00 0.00 3.16
139 140 1.019673 CCCGCGCTACTACTAACAGA 58.980 55.000 5.56 0.00 0.00 3.41
140 141 1.268437 CCCGCGCTACTACTAACAGAC 60.268 57.143 5.56 0.00 0.00 3.51
141 142 1.594034 CCGCGCTACTACTAACAGACG 60.594 57.143 5.56 0.00 0.00 4.18
142 143 1.061711 CGCGCTACTACTAACAGACGT 59.938 52.381 5.56 0.00 0.00 4.34
143 144 2.282555 CGCGCTACTACTAACAGACGTA 59.717 50.000 5.56 0.00 0.00 3.57
144 145 3.601135 CGCGCTACTACTAACAGACGTAG 60.601 52.174 5.56 0.00 39.14 3.51
157 158 3.558674 ACGTAGTAGTAGCACGGGT 57.441 52.632 8.01 0.00 41.94 5.28
158 159 1.089920 ACGTAGTAGTAGCACGGGTG 58.910 55.000 8.01 0.00 41.94 4.61
180 181 4.737855 CACCCATGCTACTACTACAAGT 57.262 45.455 0.00 0.00 0.00 3.16
181 182 5.086104 CACCCATGCTACTACTACAAGTT 57.914 43.478 0.00 0.00 0.00 2.66
182 183 6.216801 CACCCATGCTACTACTACAAGTTA 57.783 41.667 0.00 0.00 0.00 2.24
183 184 6.273825 CACCCATGCTACTACTACAAGTTAG 58.726 44.000 0.00 0.00 0.00 2.34
184 185 5.163437 ACCCATGCTACTACTACAAGTTAGC 60.163 44.000 4.53 4.53 31.94 3.09
185 186 5.069251 CCCATGCTACTACTACAAGTTAGCT 59.931 44.000 10.50 0.00 32.25 3.32
186 187 5.980116 CCATGCTACTACTACAAGTTAGCTG 59.020 44.000 0.00 7.32 32.25 4.24
187 188 6.405953 CCATGCTACTACTACAAGTTAGCTGT 60.406 42.308 0.00 0.00 32.25 4.40
188 189 7.201794 CCATGCTACTACTACAAGTTAGCTGTA 60.202 40.741 0.00 0.00 32.25 2.74
189 190 7.317842 TGCTACTACTACAAGTTAGCTGTAG 57.682 40.000 8.17 8.17 40.75 2.74
190 191 6.183360 TGCTACTACTACAAGTTAGCTGTAGC 60.183 42.308 19.01 19.01 42.75 3.58
200 201 4.610844 GCTGTAGCGCCGTAGTAG 57.389 61.111 2.29 0.00 0.00 2.57
201 202 1.726265 GCTGTAGCGCCGTAGTAGT 59.274 57.895 2.29 0.00 0.00 2.73
202 203 0.591741 GCTGTAGCGCCGTAGTAGTG 60.592 60.000 2.29 0.00 0.00 2.74
203 204 0.029035 CTGTAGCGCCGTAGTAGTGG 59.971 60.000 2.29 0.00 0.00 4.00
209 210 4.564116 CCGTAGTAGTGGCGCGGG 62.564 72.222 8.83 0.00 38.86 6.13
211 212 4.137872 GTAGTAGTGGCGCGGGCA 62.138 66.667 26.61 11.42 42.47 5.36
225 226 3.295800 GGCACCCACGCTACTACT 58.704 61.111 0.00 0.00 0.00 2.57
226 227 2.496942 GGCACCCACGCTACTACTA 58.503 57.895 0.00 0.00 0.00 1.82
227 228 0.384669 GGCACCCACGCTACTACTAG 59.615 60.000 0.00 0.00 0.00 2.57
228 229 0.384669 GCACCCACGCTACTACTAGG 59.615 60.000 0.00 0.00 0.00 3.02
229 230 2.020694 GCACCCACGCTACTACTAGGA 61.021 57.143 0.00 0.00 0.00 2.94
230 231 2.584236 CACCCACGCTACTACTAGGAT 58.416 52.381 0.00 0.00 0.00 3.24
231 232 2.957006 CACCCACGCTACTACTAGGATT 59.043 50.000 0.00 0.00 0.00 3.01
232 233 3.383825 CACCCACGCTACTACTAGGATTT 59.616 47.826 0.00 0.00 0.00 2.17
233 234 4.028825 ACCCACGCTACTACTAGGATTTT 58.971 43.478 0.00 0.00 0.00 1.82
234 235 4.099113 ACCCACGCTACTACTAGGATTTTC 59.901 45.833 0.00 0.00 0.00 2.29
235 236 4.501058 CCCACGCTACTACTAGGATTTTCC 60.501 50.000 0.00 0.00 36.58 3.13
236 237 4.501058 CCACGCTACTACTAGGATTTTCCC 60.501 50.000 0.00 0.00 37.19 3.97
237 238 4.341520 CACGCTACTACTAGGATTTTCCCT 59.658 45.833 0.00 0.00 37.19 4.20
238 239 5.533903 CACGCTACTACTAGGATTTTCCCTA 59.466 44.000 0.00 0.00 37.19 3.53
247 248 6.658188 CTAGGATTTTCCCTAGTAGTGAGG 57.342 45.833 8.44 0.00 46.78 3.86
262 263 2.143129 GAGGGTTTATCCTCCCCCG 58.857 63.158 0.00 0.00 45.75 5.73
263 264 0.693430 GAGGGTTTATCCTCCCCCGT 60.693 60.000 0.00 0.00 45.75 5.28
264 265 0.986550 AGGGTTTATCCTCCCCCGTG 60.987 60.000 0.00 0.00 44.40 4.94
265 266 1.276859 GGGTTTATCCTCCCCCGTGT 61.277 60.000 0.00 0.00 37.89 4.49
266 267 0.107361 GGTTTATCCTCCCCCGTGTG 60.107 60.000 0.00 0.00 0.00 3.82
267 268 0.746923 GTTTATCCTCCCCCGTGTGC 60.747 60.000 0.00 0.00 0.00 4.57
268 269 2.246761 TTTATCCTCCCCCGTGTGCG 62.247 60.000 0.00 0.00 37.95 5.34
285 286 4.398598 GGCGGCGCGATTTGTTGT 62.399 61.111 26.95 0.00 0.00 3.32
286 287 2.869702 GCGGCGCGATTTGTTGTC 60.870 61.111 19.09 0.00 0.00 3.18
287 288 2.553770 CGGCGCGATTTGTTGTCA 59.446 55.556 12.10 0.00 0.00 3.58
288 289 1.792057 CGGCGCGATTTGTTGTCAC 60.792 57.895 12.10 0.00 0.00 3.67
289 290 1.281353 GGCGCGATTTGTTGTCACA 59.719 52.632 12.10 0.00 0.00 3.58
290 291 0.996727 GGCGCGATTTGTTGTCACAC 60.997 55.000 12.10 0.00 30.32 3.82
291 292 1.320382 GCGCGATTTGTTGTCACACG 61.320 55.000 12.10 0.00 30.32 4.49
292 293 0.042535 CGCGATTTGTTGTCACACGT 60.043 50.000 0.00 0.00 30.32 4.49
293 294 1.593551 CGCGATTTGTTGTCACACGTT 60.594 47.619 0.00 0.00 30.32 3.99
294 295 2.446282 GCGATTTGTTGTCACACGTTT 58.554 42.857 0.00 0.00 30.32 3.60
295 296 2.849473 GCGATTTGTTGTCACACGTTTT 59.151 40.909 0.00 0.00 30.32 2.43
296 297 4.029704 GCGATTTGTTGTCACACGTTTTA 58.970 39.130 0.00 0.00 30.32 1.52
297 298 4.144051 GCGATTTGTTGTCACACGTTTTAG 59.856 41.667 0.00 0.00 30.32 1.85
298 299 5.494618 CGATTTGTTGTCACACGTTTTAGA 58.505 37.500 0.00 0.00 30.32 2.10
299 300 6.133392 CGATTTGTTGTCACACGTTTTAGAT 58.867 36.000 0.00 0.00 30.32 1.98
300 301 6.299966 CGATTTGTTGTCACACGTTTTAGATC 59.700 38.462 0.00 0.00 30.32 2.75
301 302 6.671614 TTTGTTGTCACACGTTTTAGATCT 57.328 33.333 0.00 0.00 30.32 2.75
302 303 7.773864 TTTGTTGTCACACGTTTTAGATCTA 57.226 32.000 0.00 0.00 30.32 1.98
303 304 7.956420 TTGTTGTCACACGTTTTAGATCTAT 57.044 32.000 2.58 0.00 30.32 1.98
304 305 7.956420 TGTTGTCACACGTTTTAGATCTATT 57.044 32.000 2.58 0.00 0.00 1.73
305 306 8.373048 TGTTGTCACACGTTTTAGATCTATTT 57.627 30.769 2.58 0.00 0.00 1.40
306 307 9.478768 TGTTGTCACACGTTTTAGATCTATTTA 57.521 29.630 2.58 0.00 0.00 1.40
309 310 9.146984 TGTCACACGTTTTAGATCTATTTAAGG 57.853 33.333 2.58 7.01 0.00 2.69
310 311 8.114905 GTCACACGTTTTAGATCTATTTAAGGC 58.885 37.037 2.58 0.00 0.00 4.35
311 312 8.038944 TCACACGTTTTAGATCTATTTAAGGCT 58.961 33.333 2.58 0.00 0.00 4.58
312 313 8.665685 CACACGTTTTAGATCTATTTAAGGCTT 58.334 33.333 4.58 4.58 0.00 4.35
313 314 8.880750 ACACGTTTTAGATCTATTTAAGGCTTC 58.119 33.333 1.30 0.00 0.00 3.86
314 315 8.879759 CACGTTTTAGATCTATTTAAGGCTTCA 58.120 33.333 1.30 0.00 0.00 3.02
315 316 9.444600 ACGTTTTAGATCTATTTAAGGCTTCAA 57.555 29.630 1.30 0.00 0.00 2.69
322 323 9.466497 AGATCTATTTAAGGCTTCAATGTTGAA 57.534 29.630 15.21 7.84 44.31 2.69
324 325 9.860898 ATCTATTTAAGGCTTCAATGTTGAAAC 57.139 29.630 15.21 5.22 45.61 2.78
325 326 9.077885 TCTATTTAAGGCTTCAATGTTGAAACT 57.922 29.630 15.21 7.75 45.61 2.66
326 327 7.951530 ATTTAAGGCTTCAATGTTGAAACTG 57.048 32.000 1.30 0.44 45.61 3.16
327 328 3.375782 AGGCTTCAATGTTGAAACTGC 57.624 42.857 9.24 8.97 45.61 4.40
328 329 2.407090 GGCTTCAATGTTGAAACTGCC 58.593 47.619 16.48 16.48 45.61 4.85
329 330 2.036346 GGCTTCAATGTTGAAACTGCCT 59.964 45.455 20.92 0.00 45.31 4.75
330 331 3.311966 GCTTCAATGTTGAAACTGCCTC 58.688 45.455 9.24 0.00 45.61 4.70
331 332 3.005155 GCTTCAATGTTGAAACTGCCTCT 59.995 43.478 9.24 0.00 45.61 3.69
332 333 4.216257 GCTTCAATGTTGAAACTGCCTCTA 59.784 41.667 9.24 0.00 45.61 2.43
333 334 5.618640 GCTTCAATGTTGAAACTGCCTCTAG 60.619 44.000 9.24 0.00 45.61 2.43
334 335 4.326826 TCAATGTTGAAACTGCCTCTAGG 58.673 43.478 0.00 0.00 33.55 3.02
335 336 4.041567 TCAATGTTGAAACTGCCTCTAGGA 59.958 41.667 0.00 0.00 33.50 2.94
336 337 3.402628 TGTTGAAACTGCCTCTAGGAC 57.597 47.619 0.00 0.00 37.39 3.85
337 338 2.703536 TGTTGAAACTGCCTCTAGGACA 59.296 45.455 0.00 0.00 37.39 4.02
338 339 3.135712 TGTTGAAACTGCCTCTAGGACAA 59.864 43.478 0.00 0.00 37.39 3.18
339 340 4.202461 TGTTGAAACTGCCTCTAGGACAAT 60.202 41.667 0.00 0.00 37.39 2.71
340 341 3.942829 TGAAACTGCCTCTAGGACAATG 58.057 45.455 0.00 0.00 37.39 2.82
341 342 3.274288 GAAACTGCCTCTAGGACAATGG 58.726 50.000 0.00 0.00 37.39 3.16
342 343 1.958288 ACTGCCTCTAGGACAATGGT 58.042 50.000 0.00 0.00 37.39 3.55
343 344 1.834263 ACTGCCTCTAGGACAATGGTC 59.166 52.381 0.00 0.00 43.55 4.02
369 370 0.869880 GGCACGTGCACAAAGGTTTC 60.870 55.000 38.60 15.88 44.36 2.78
371 372 0.738389 CACGTGCACAAAGGTTTCCT 59.262 50.000 18.64 0.00 33.87 3.36
400 401 1.035139 CAACAAGGTCAAGCTGGCTT 58.965 50.000 1.60 1.60 36.60 4.35
401 402 1.410153 CAACAAGGTCAAGCTGGCTTT 59.590 47.619 4.98 0.00 33.42 3.51
406 407 3.659183 AGGTCAAGCTGGCTTTGATAT 57.341 42.857 4.98 0.00 33.42 1.63
415 416 1.518903 GGCTTTGATATGGGAGCGGC 61.519 60.000 0.00 0.00 36.02 6.53
416 417 0.819259 GCTTTGATATGGGAGCGGCA 60.819 55.000 1.45 0.00 0.00 5.69
418 419 2.233271 CTTTGATATGGGAGCGGCAAT 58.767 47.619 1.45 0.00 0.00 3.56
433 434 1.810197 GCAATAAAGCCACGTTAGCG 58.190 50.000 0.00 0.00 44.93 4.26
437 438 2.443887 TAAAGCCACGTTAGCGACTT 57.556 45.000 5.81 3.54 42.00 3.01
439 440 0.249741 AAGCCACGTTAGCGACTTGT 60.250 50.000 5.81 0.00 42.00 3.16
446 447 2.034305 ACGTTAGCGACTTGTTCTGACT 59.966 45.455 5.81 0.00 42.00 3.41
449 450 2.333389 AGCGACTTGTTCTGACTACG 57.667 50.000 0.00 0.00 0.00 3.51
476 477 2.223340 GGTTGTTCGATGATGCATGGTC 60.223 50.000 2.46 0.27 0.00 4.02
485 486 3.929955 TGATGCATGGTCCTTGATGTA 57.070 42.857 2.46 0.00 0.00 2.29
604 628 7.516198 AATTAAGATGATGCCCTCACATTAC 57.484 36.000 0.00 0.00 36.48 1.89
612 636 1.609580 GCCCTCACATTACGGTGTTCA 60.610 52.381 0.00 0.00 39.76 3.18
657 682 7.118971 GCATAGCAACCCAAGAATAGAAGATAG 59.881 40.741 0.00 0.00 0.00 2.08
814 839 7.070074 ACTCCCTAATTATACACCACTCTCTTG 59.930 40.741 0.00 0.00 0.00 3.02
815 840 5.992217 CCCTAATTATACACCACTCTCTTGC 59.008 44.000 0.00 0.00 0.00 4.01
848 873 2.034812 GCCGAGCTATATATTCCTCCCG 59.965 54.545 0.00 0.00 0.00 5.14
856 881 2.489528 ATATTCCTCCCGGTTCCTCA 57.510 50.000 0.00 0.00 0.00 3.86
914 939 3.568853 CCGTCCTACCTTCATACACCTAG 59.431 52.174 0.00 0.00 0.00 3.02
967 992 0.729816 GCTCGATCGATCCTAACGGC 60.730 60.000 19.78 12.00 0.00 5.68
985 1010 7.427606 CCTAACGGCGAATAATAATCTACTACG 59.572 40.741 16.62 0.00 0.00 3.51
1044 1069 1.115467 CCGTCTCCTTGCTCCTGTAT 58.885 55.000 0.00 0.00 0.00 2.29
1186 1211 3.665675 ATCGAGGTCGCCAACAGCC 62.666 63.158 0.00 0.00 38.78 4.85
1266 1291 1.221414 GACTGCACAAGAAGTTCGCT 58.779 50.000 0.00 0.00 32.18 4.93
1650 1675 2.093306 TCATCCACAACATCCACGTC 57.907 50.000 0.00 0.00 0.00 4.34
1857 1882 1.053835 TCTCCAACTGCCACCTCACA 61.054 55.000 0.00 0.00 0.00 3.58
1953 1978 0.685097 TCAACCACTTCGGAAGAGGG 59.315 55.000 29.55 25.86 42.74 4.30
2028 2053 3.957497 TGGTTGGTTAATTTGTGCTCACT 59.043 39.130 1.47 0.00 0.00 3.41
2029 2054 4.202101 TGGTTGGTTAATTTGTGCTCACTG 60.202 41.667 1.47 0.00 0.00 3.66
2235 2260 3.450115 GGCTGTACGCGGAGGAGT 61.450 66.667 12.47 0.00 40.44 3.85
2339 2364 2.094442 CCAGAGGAAGTTCGAGAAGGAC 60.094 54.545 0.00 0.00 0.00 3.85
2384 2409 1.663739 GTACGTCACCAGGCTCACA 59.336 57.895 0.00 0.00 0.00 3.58
2483 2508 5.297547 CGATCCCTTCCGAATCTTCAATTA 58.702 41.667 0.00 0.00 0.00 1.40
2485 2510 6.428159 CGATCCCTTCCGAATCTTCAATTATT 59.572 38.462 0.00 0.00 0.00 1.40
2530 2561 9.817809 ACTCAAAGATTCGTGTATGTATTATGT 57.182 29.630 0.00 0.00 0.00 2.29
2565 2596 3.159213 TGAGTAGTCTACGGGGTTCAA 57.841 47.619 4.34 0.00 0.00 2.69
2566 2597 3.087031 TGAGTAGTCTACGGGGTTCAAG 58.913 50.000 4.34 0.00 0.00 3.02
2596 2627 3.671716 CCCTGTAGGTTGTTCTTGTACC 58.328 50.000 0.00 0.00 0.00 3.34
2639 2670 3.753434 CGACGCAGAGGCCAGAGT 61.753 66.667 5.01 1.52 36.38 3.24
2642 2673 3.385384 CGCAGAGGCCAGAGTGGA 61.385 66.667 5.01 0.00 40.96 4.02
2643 2674 2.729479 CGCAGAGGCCAGAGTGGAT 61.729 63.158 5.01 0.00 40.96 3.41
2644 2675 1.153208 GCAGAGGCCAGAGTGGATG 60.153 63.158 5.01 0.00 40.96 3.51
2645 2676 1.620739 GCAGAGGCCAGAGTGGATGA 61.621 60.000 5.01 0.00 40.96 2.92
2646 2677 0.177604 CAGAGGCCAGAGTGGATGAC 59.822 60.000 5.01 0.00 40.96 3.06
2647 2678 1.142748 GAGGCCAGAGTGGATGACG 59.857 63.158 5.01 0.00 40.96 4.35
2648 2679 2.187946 GGCCAGAGTGGATGACGG 59.812 66.667 0.00 0.00 40.96 4.79
2649 2680 2.359169 GGCCAGAGTGGATGACGGA 61.359 63.158 0.00 0.00 40.96 4.69
2650 2681 1.153549 GCCAGAGTGGATGACGGAC 60.154 63.158 0.00 0.00 40.96 4.79
2656 2687 1.133407 GAGTGGATGACGGACAGAGAC 59.867 57.143 0.00 0.00 0.00 3.36
2693 2724 3.995636 AGGTCATCCTGCTTACTTAGGA 58.004 45.455 0.00 0.00 46.43 2.94
2715 2746 2.528127 TGGAGGGCCCGACAGAAA 60.528 61.111 18.44 0.00 37.93 2.52
2723 2754 1.503542 CCCGACAGAAAGCATGCAC 59.496 57.895 21.98 10.82 0.00 4.57
2753 2784 3.009143 AGAGGGCCGAGACTAATTTGTTT 59.991 43.478 0.00 0.00 0.00 2.83
2755 2786 4.913784 AGGGCCGAGACTAATTTGTTTAA 58.086 39.130 0.00 0.00 0.00 1.52
2756 2787 4.698780 AGGGCCGAGACTAATTTGTTTAAC 59.301 41.667 0.00 0.00 0.00 2.01
2758 2789 4.389687 GGCCGAGACTAATTTGTTTAACGA 59.610 41.667 0.00 0.00 0.00 3.85
2760 2791 6.402875 GGCCGAGACTAATTTGTTTAACGATT 60.403 38.462 0.00 2.94 0.00 3.34
2761 2792 6.464834 GCCGAGACTAATTTGTTTAACGATTG 59.535 38.462 0.00 0.00 0.00 2.67
2821 2856 6.117911 TCAACTTTCTACATGTGTGTGTTG 57.882 37.500 9.11 15.58 39.39 3.33
2850 2885 4.636249 CAATATGTTACAGAGGAGGAGGC 58.364 47.826 0.00 0.00 0.00 4.70
2852 2887 0.251653 TGTTACAGAGGAGGAGGCGT 60.252 55.000 0.00 0.00 0.00 5.68
2854 2889 0.039180 TTACAGAGGAGGAGGCGTCA 59.961 55.000 8.91 0.00 0.00 4.35
2855 2890 0.259065 TACAGAGGAGGAGGCGTCAT 59.741 55.000 8.91 0.00 0.00 3.06
2856 2891 0.616111 ACAGAGGAGGAGGCGTCATT 60.616 55.000 8.91 0.00 0.00 2.57
2857 2892 0.179089 CAGAGGAGGAGGCGTCATTG 60.179 60.000 8.91 0.00 0.00 2.82
2858 2893 0.324738 AGAGGAGGAGGCGTCATTGA 60.325 55.000 8.91 0.00 0.00 2.57
2859 2894 0.179097 GAGGAGGAGGCGTCATTGAC 60.179 60.000 8.91 6.73 0.00 3.18
2867 2905 1.154413 GCGTCATTGACACTTGGCG 60.154 57.895 16.61 7.11 43.45 5.69
2892 2930 1.941812 CACCCTTGACGTGCTTGAC 59.058 57.895 0.00 0.00 0.00 3.18
2900 2938 2.928361 CGTGCTTGACGTGGTGAC 59.072 61.111 0.00 0.00 43.50 3.67
2903 2941 1.137513 GTGCTTGACGTGGTGACTAC 58.862 55.000 0.00 0.00 0.00 2.73
2904 2942 1.037493 TGCTTGACGTGGTGACTACT 58.963 50.000 0.00 0.00 0.00 2.57
2905 2943 1.000607 TGCTTGACGTGGTGACTACTC 60.001 52.381 0.00 0.00 0.00 2.59
2906 2944 1.269998 GCTTGACGTGGTGACTACTCT 59.730 52.381 0.00 0.00 0.00 3.24
2907 2945 2.486982 GCTTGACGTGGTGACTACTCTA 59.513 50.000 0.00 0.00 0.00 2.43
2908 2946 3.426426 GCTTGACGTGGTGACTACTCTAG 60.426 52.174 0.00 2.46 0.00 2.43
2909 2947 2.082231 TGACGTGGTGACTACTCTAGC 58.918 52.381 0.00 0.00 0.00 3.42
2910 2948 1.062294 GACGTGGTGACTACTCTAGCG 59.938 57.143 0.00 0.00 0.00 4.26
2911 2949 1.085091 CGTGGTGACTACTCTAGCGT 58.915 55.000 0.00 0.00 0.00 5.07
2912 2950 2.274437 CGTGGTGACTACTCTAGCGTA 58.726 52.381 0.00 0.00 0.00 4.42
2913 2951 2.284684 CGTGGTGACTACTCTAGCGTAG 59.715 54.545 16.60 16.60 41.98 3.51
2914 2952 2.613133 GTGGTGACTACTCTAGCGTAGG 59.387 54.545 20.96 6.38 40.87 3.18
2915 2953 1.603326 GGTGACTACTCTAGCGTAGGC 59.397 57.143 20.96 19.26 44.18 3.93
2927 2965 1.079503 GCGTAGGCTTTCTGTTGAGG 58.920 55.000 0.00 0.00 35.83 3.86
2941 2979 7.540474 TTCTGTTGAGGTTGTTAGAGATAGT 57.460 36.000 0.00 0.00 0.00 2.12
3006 3051 1.486726 CCCTCTCGGTTAGGCAATCTT 59.513 52.381 0.00 0.00 32.34 2.40
3014 3059 2.280628 GTTAGGCAATCTTCACCGAGG 58.719 52.381 0.00 0.00 0.00 4.63
3021 3066 3.535561 CAATCTTCACCGAGGCTTGTAT 58.464 45.455 0.12 0.00 0.00 2.29
3023 3068 1.480954 TCTTCACCGAGGCTTGTATCC 59.519 52.381 0.12 0.00 0.00 2.59
3030 3075 2.600731 CGAGGCTTGTATCCATCGATC 58.399 52.381 0.00 0.00 32.13 3.69
3031 3076 2.029918 CGAGGCTTGTATCCATCGATCA 60.030 50.000 0.00 0.00 32.13 2.92
3032 3077 3.367806 CGAGGCTTGTATCCATCGATCAT 60.368 47.826 0.00 0.00 32.13 2.45
3035 3090 3.265791 GCTTGTATCCATCGATCATCCC 58.734 50.000 0.00 0.00 0.00 3.85
3045 3100 7.622502 TCCATCGATCATCCCATCAATATAT 57.377 36.000 0.00 0.00 0.00 0.86
3069 3124 1.360551 CGGGCTCTCGTGTATGAGG 59.639 63.158 1.56 0.00 36.61 3.86
3078 3133 2.492088 CTCGTGTATGAGGGTTGAGACA 59.508 50.000 0.00 0.00 32.18 3.41
3079 3134 3.096852 TCGTGTATGAGGGTTGAGACAT 58.903 45.455 0.00 0.00 0.00 3.06
3088 3143 6.817765 TGAGGGTTGAGACATTTTCATAAC 57.182 37.500 0.00 0.00 0.00 1.89
3141 3196 5.772672 TCCATCTCATCTAGCTAGTTCTTCC 59.227 44.000 20.10 0.00 0.00 3.46
3147 3202 6.191315 TCATCTAGCTAGTTCTTCCTCAACT 58.809 40.000 20.10 0.00 37.80 3.16
3150 3205 6.249951 TCTAGCTAGTTCTTCCTCAACTCTT 58.750 40.000 20.10 0.00 35.63 2.85
3154 3209 5.279256 GCTAGTTCTTCCTCAACTCTTCACT 60.279 44.000 0.00 0.00 35.63 3.41
3161 3216 2.370189 CCTCAACTCTTCACTCAACCCT 59.630 50.000 0.00 0.00 0.00 4.34
3162 3217 3.181450 CCTCAACTCTTCACTCAACCCTT 60.181 47.826 0.00 0.00 0.00 3.95
3163 3218 4.061596 CTCAACTCTTCACTCAACCCTTC 58.938 47.826 0.00 0.00 0.00 3.46
3164 3219 3.711704 TCAACTCTTCACTCAACCCTTCT 59.288 43.478 0.00 0.00 0.00 2.85
3182 3237 2.550175 TCTTCATCATGTCCACCTCCA 58.450 47.619 0.00 0.00 0.00 3.86
3184 3239 0.911769 TCATCATGTCCACCTCCACC 59.088 55.000 0.00 0.00 0.00 4.61
3201 3256 1.379710 CCGCACCCATCCAATCCAA 60.380 57.895 0.00 0.00 0.00 3.53
3218 3273 2.506231 TCCAACCTCAACTACAACACCA 59.494 45.455 0.00 0.00 0.00 4.17
3232 3287 1.424638 ACACCACTGAGCCACTTACT 58.575 50.000 0.00 0.00 0.00 2.24
3235 3290 0.888619 CCACTGAGCCACTTACTCGA 59.111 55.000 0.00 0.00 36.94 4.04
3274 3329 0.114954 AAGCCCAAGCAAGATCCCAA 59.885 50.000 0.00 0.00 43.56 4.12
3296 3351 2.457743 AATGGGCGTCGGCTTGTACA 62.458 55.000 19.00 7.92 39.81 2.90
3297 3352 2.357760 GGGCGTCGGCTTGTACAA 60.358 61.111 19.00 8.28 39.81 2.41
3305 3360 2.597305 GTCGGCTTGTACAACTACATCG 59.403 50.000 3.59 3.18 32.70 3.84
3327 3382 0.036010 AACACCATTGAGGAGCCTCG 60.036 55.000 11.64 0.42 45.48 4.63
3364 3419 1.594331 AAGACAAAGACGGCAAGGAC 58.406 50.000 0.00 0.00 0.00 3.85
3381 3436 1.465188 ACCAGGTCATCCCCAACCA 60.465 57.895 0.00 0.00 38.06 3.67
3415 3470 4.324563 CCCTAGTTTGTCCAGGATCAACAT 60.325 45.833 13.71 5.39 0.00 2.71
3421 3476 3.554934 TGTCCAGGATCAACATATTGCC 58.445 45.455 0.00 0.00 35.63 4.52
3427 3482 4.456911 CAGGATCAACATATTGCCGCTTAT 59.543 41.667 0.00 0.00 35.63 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.049185 AGATCCAGCGACGACTGCT 61.049 57.895 0.00 0.00 45.31 4.24
3 4 1.658686 GACCAGATCCAGCGACGACT 61.659 60.000 0.00 0.00 0.00 4.18
5 6 1.378646 AGACCAGATCCAGCGACGA 60.379 57.895 0.00 0.00 0.00 4.20
6 7 1.226802 CAGACCAGATCCAGCGACG 60.227 63.158 0.00 0.00 0.00 5.12
7 8 1.520342 GCAGACCAGATCCAGCGAC 60.520 63.158 0.00 0.00 0.00 5.19
8 9 2.725312 GGCAGACCAGATCCAGCGA 61.725 63.158 0.00 0.00 35.26 4.93
9 10 2.202987 GGCAGACCAGATCCAGCG 60.203 66.667 0.00 0.00 35.26 5.18
10 11 2.202987 CGGCAGACCAGATCCAGC 60.203 66.667 0.00 0.00 34.57 4.85
11 12 2.362369 ACCGGCAGACCAGATCCAG 61.362 63.158 0.00 0.00 34.57 3.86
12 13 2.284625 ACCGGCAGACCAGATCCA 60.285 61.111 0.00 0.00 34.57 3.41
13 14 2.187946 CACCGGCAGACCAGATCC 59.812 66.667 0.00 0.00 34.57 3.36
14 15 2.512515 GCACCGGCAGACCAGATC 60.513 66.667 0.00 0.00 40.72 2.75
15 16 4.101448 GGCACCGGCAGACCAGAT 62.101 66.667 0.00 0.00 43.71 2.90
29 30 4.697756 CGGAGGTGCGAAAGGGCA 62.698 66.667 0.00 0.00 41.45 5.36
49 50 2.270874 ATCCAATGACGGCAGGGGTC 62.271 60.000 11.54 0.00 34.99 4.46
50 51 2.270874 GATCCAATGACGGCAGGGGT 62.271 60.000 11.54 4.46 0.00 4.95
51 52 1.526917 GATCCAATGACGGCAGGGG 60.527 63.158 11.54 8.23 0.00 4.79
52 53 1.889105 CGATCCAATGACGGCAGGG 60.889 63.158 5.39 5.39 0.00 4.45
53 54 0.461870 TTCGATCCAATGACGGCAGG 60.462 55.000 0.00 0.00 0.00 4.85
54 55 0.652592 GTTCGATCCAATGACGGCAG 59.347 55.000 0.00 0.00 0.00 4.85
55 56 0.036858 TGTTCGATCCAATGACGGCA 60.037 50.000 0.00 0.00 0.00 5.69
56 57 1.083489 TTGTTCGATCCAATGACGGC 58.917 50.000 0.00 0.00 0.00 5.68
57 58 3.683989 CAATTGTTCGATCCAATGACGG 58.316 45.455 10.53 0.78 33.01 4.79
58 59 3.100817 GCAATTGTTCGATCCAATGACG 58.899 45.455 7.40 5.46 33.01 4.35
59 60 4.100529 CAGCAATTGTTCGATCCAATGAC 58.899 43.478 7.40 7.00 33.01 3.06
60 61 3.427909 GCAGCAATTGTTCGATCCAATGA 60.428 43.478 7.40 0.00 33.01 2.57
61 62 2.855963 GCAGCAATTGTTCGATCCAATG 59.144 45.455 7.40 7.21 33.01 2.82
62 63 2.159198 GGCAGCAATTGTTCGATCCAAT 60.159 45.455 7.40 5.30 34.07 3.16
63 64 1.202114 GGCAGCAATTGTTCGATCCAA 59.798 47.619 7.40 1.10 0.00 3.53
64 65 0.810648 GGCAGCAATTGTTCGATCCA 59.189 50.000 7.40 0.00 0.00 3.41
65 66 0.810648 TGGCAGCAATTGTTCGATCC 59.189 50.000 7.40 0.51 0.00 3.36
66 67 2.857592 ATGGCAGCAATTGTTCGATC 57.142 45.000 7.40 0.00 0.00 3.69
67 68 4.082300 TGTTAATGGCAGCAATTGTTCGAT 60.082 37.500 5.13 0.00 0.00 3.59
68 69 3.254411 TGTTAATGGCAGCAATTGTTCGA 59.746 39.130 5.13 0.00 0.00 3.71
69 70 3.573598 TGTTAATGGCAGCAATTGTTCG 58.426 40.909 5.13 0.00 0.00 3.95
79 80 1.796253 CGTGCATGCTGTTAATGGCAG 60.796 52.381 20.33 0.36 41.88 4.85
80 81 0.170784 CGTGCATGCTGTTAATGGCA 59.829 50.000 20.33 7.56 42.80 4.92
81 82 0.526096 CCGTGCATGCTGTTAATGGC 60.526 55.000 20.33 0.00 0.00 4.40
82 83 0.101040 CCCGTGCATGCTGTTAATGG 59.899 55.000 20.33 12.47 0.00 3.16
83 84 1.093972 TCCCGTGCATGCTGTTAATG 58.906 50.000 20.33 3.08 0.00 1.90
84 85 1.949525 GATCCCGTGCATGCTGTTAAT 59.050 47.619 20.33 7.18 0.00 1.40
85 86 1.378531 GATCCCGTGCATGCTGTTAA 58.621 50.000 20.33 2.06 0.00 2.01
86 87 0.809636 CGATCCCGTGCATGCTGTTA 60.810 55.000 20.33 0.87 0.00 2.41
87 88 2.108514 CGATCCCGTGCATGCTGTT 61.109 57.895 20.33 0.05 0.00 3.16
88 89 2.512286 CGATCCCGTGCATGCTGT 60.512 61.111 20.33 0.00 0.00 4.40
89 90 2.202919 TCGATCCCGTGCATGCTG 60.203 61.111 20.33 11.33 37.05 4.41
90 91 1.960040 TTCTCGATCCCGTGCATGCT 61.960 55.000 20.33 0.00 37.05 3.79
91 92 0.882042 ATTCTCGATCCCGTGCATGC 60.882 55.000 11.82 11.82 37.05 4.06
92 93 1.586422 AATTCTCGATCCCGTGCATG 58.414 50.000 0.00 0.00 37.05 4.06
93 94 2.332063 AAATTCTCGATCCCGTGCAT 57.668 45.000 0.00 0.00 37.05 3.96
94 95 2.107950 AAAATTCTCGATCCCGTGCA 57.892 45.000 0.00 0.00 37.05 4.57
112 113 1.799994 GTAGTAGCGCGGGAACAAAAA 59.200 47.619 8.83 0.00 0.00 1.94
113 114 1.001181 AGTAGTAGCGCGGGAACAAAA 59.999 47.619 8.83 0.00 0.00 2.44
114 115 0.604578 AGTAGTAGCGCGGGAACAAA 59.395 50.000 8.83 0.00 0.00 2.83
115 116 1.462616 TAGTAGTAGCGCGGGAACAA 58.537 50.000 8.83 0.00 0.00 2.83
116 117 1.133025 GTTAGTAGTAGCGCGGGAACA 59.867 52.381 8.83 0.00 0.00 3.18
117 118 1.133025 TGTTAGTAGTAGCGCGGGAAC 59.867 52.381 8.83 0.00 0.00 3.62
118 119 1.402968 CTGTTAGTAGTAGCGCGGGAA 59.597 52.381 8.83 0.00 0.00 3.97
119 120 1.019673 CTGTTAGTAGTAGCGCGGGA 58.980 55.000 8.83 0.00 0.00 5.14
120 121 1.019673 TCTGTTAGTAGTAGCGCGGG 58.980 55.000 8.83 0.00 0.00 6.13
121 122 1.594034 CGTCTGTTAGTAGTAGCGCGG 60.594 57.143 8.83 0.00 0.00 6.46
122 123 1.061711 ACGTCTGTTAGTAGTAGCGCG 59.938 52.381 0.00 0.00 0.00 6.86
123 124 2.821307 ACGTCTGTTAGTAGTAGCGC 57.179 50.000 0.00 0.00 0.00 5.92
129 130 6.291532 CGTGCTACTACTACGTCTGTTAGTAG 60.292 46.154 17.10 17.10 45.21 2.57
130 131 5.516696 CGTGCTACTACTACGTCTGTTAGTA 59.483 44.000 0.00 0.00 33.48 1.82
131 132 4.328440 CGTGCTACTACTACGTCTGTTAGT 59.672 45.833 0.00 0.00 33.48 2.24
132 133 4.260132 CCGTGCTACTACTACGTCTGTTAG 60.260 50.000 0.00 0.00 36.17 2.34
133 134 3.618594 CCGTGCTACTACTACGTCTGTTA 59.381 47.826 0.00 0.00 36.17 2.41
134 135 2.417933 CCGTGCTACTACTACGTCTGTT 59.582 50.000 0.00 0.00 36.17 3.16
135 136 2.005451 CCGTGCTACTACTACGTCTGT 58.995 52.381 0.00 0.00 36.17 3.41
136 137 1.329906 CCCGTGCTACTACTACGTCTG 59.670 57.143 0.00 0.00 36.17 3.51
137 138 1.065854 ACCCGTGCTACTACTACGTCT 60.066 52.381 0.00 0.00 36.17 4.18
138 139 1.063174 CACCCGTGCTACTACTACGTC 59.937 57.143 0.00 0.00 36.17 4.34
139 140 1.089920 CACCCGTGCTACTACTACGT 58.910 55.000 0.00 0.00 36.17 3.57
140 141 3.911989 CACCCGTGCTACTACTACG 57.088 57.895 0.00 0.00 37.55 3.51
159 160 4.737855 ACTTGTAGTAGTAGCATGGGTG 57.262 45.455 0.00 0.00 0.00 4.61
160 161 5.163437 GCTAACTTGTAGTAGTAGCATGGGT 60.163 44.000 0.00 0.00 31.21 4.51
161 162 5.069251 AGCTAACTTGTAGTAGTAGCATGGG 59.931 44.000 11.17 0.00 32.25 4.00
162 163 5.980116 CAGCTAACTTGTAGTAGTAGCATGG 59.020 44.000 11.17 0.81 32.25 3.66
163 164 6.565234 ACAGCTAACTTGTAGTAGTAGCATG 58.435 40.000 11.17 0.00 32.25 4.06
164 165 6.777213 ACAGCTAACTTGTAGTAGTAGCAT 57.223 37.500 11.17 0.22 32.25 3.79
165 166 6.183360 GCTACAGCTAACTTGTAGTAGTAGCA 60.183 42.308 21.26 0.00 46.16 3.49
166 167 6.200808 GCTACAGCTAACTTGTAGTAGTAGC 58.799 44.000 16.25 16.25 46.16 3.58
167 168 6.420588 CGCTACAGCTAACTTGTAGTAGTAG 58.579 44.000 12.41 4.16 46.16 2.57
168 169 5.220739 GCGCTACAGCTAACTTGTAGTAGTA 60.221 44.000 0.00 0.00 46.16 1.82
169 170 4.438472 GCGCTACAGCTAACTTGTAGTAGT 60.438 45.833 0.00 0.00 46.16 2.73
170 171 4.036352 GCGCTACAGCTAACTTGTAGTAG 58.964 47.826 0.00 5.79 46.16 2.57
171 172 3.181493 GGCGCTACAGCTAACTTGTAGTA 60.181 47.826 7.64 0.00 46.16 1.82
172 173 2.416972 GGCGCTACAGCTAACTTGTAGT 60.417 50.000 7.64 0.00 46.16 2.73
173 174 2.194271 GGCGCTACAGCTAACTTGTAG 58.806 52.381 7.64 7.80 46.82 2.74
174 175 1.468565 CGGCGCTACAGCTAACTTGTA 60.469 52.381 7.64 0.00 39.32 2.41
175 176 0.736325 CGGCGCTACAGCTAACTTGT 60.736 55.000 7.64 0.00 39.32 3.16
176 177 0.736325 ACGGCGCTACAGCTAACTTG 60.736 55.000 6.90 0.00 39.32 3.16
177 178 0.813184 TACGGCGCTACAGCTAACTT 59.187 50.000 6.90 0.00 39.32 2.66
178 179 0.381089 CTACGGCGCTACAGCTAACT 59.619 55.000 6.90 0.00 39.32 2.24
179 180 0.100146 ACTACGGCGCTACAGCTAAC 59.900 55.000 6.90 0.00 39.32 2.34
180 181 1.600957 CTACTACGGCGCTACAGCTAA 59.399 52.381 6.90 0.00 39.32 3.09
181 182 1.224075 CTACTACGGCGCTACAGCTA 58.776 55.000 6.90 0.00 39.32 3.32
182 183 0.747283 ACTACTACGGCGCTACAGCT 60.747 55.000 6.90 0.00 39.32 4.24
183 184 0.591741 CACTACTACGGCGCTACAGC 60.592 60.000 6.90 0.00 37.78 4.40
184 185 0.029035 CCACTACTACGGCGCTACAG 59.971 60.000 6.90 4.12 0.00 2.74
185 186 1.996786 GCCACTACTACGGCGCTACA 61.997 60.000 6.90 0.00 38.82 2.74
186 187 1.298938 GCCACTACTACGGCGCTAC 60.299 63.158 6.90 0.00 38.82 3.58
187 188 3.113745 GCCACTACTACGGCGCTA 58.886 61.111 6.90 0.00 38.82 4.26
192 193 4.564116 CCCGCGCCACTACTACGG 62.564 72.222 0.00 0.00 43.44 4.02
194 195 4.137872 TGCCCGCGCCACTACTAC 62.138 66.667 0.00 0.00 0.00 2.73
195 196 4.137872 GTGCCCGCGCCACTACTA 62.138 66.667 17.41 0.00 0.00 1.82
206 207 3.454573 TAGTAGCGTGGGTGCCCG 61.455 66.667 2.44 0.00 39.42 6.13
207 208 1.039233 TAGTAGTAGCGTGGGTGCCC 61.039 60.000 0.00 0.00 34.65 5.36
208 209 0.384669 CTAGTAGTAGCGTGGGTGCC 59.615 60.000 0.00 0.00 34.65 5.01
209 210 0.384669 CCTAGTAGTAGCGTGGGTGC 59.615 60.000 0.00 0.00 0.00 5.01
210 211 2.048444 TCCTAGTAGTAGCGTGGGTG 57.952 55.000 0.00 0.00 0.00 4.61
211 212 3.309600 AATCCTAGTAGTAGCGTGGGT 57.690 47.619 0.00 0.00 0.00 4.51
212 213 4.501058 GGAAAATCCTAGTAGTAGCGTGGG 60.501 50.000 0.00 0.00 32.53 4.61
213 214 4.501058 GGGAAAATCCTAGTAGTAGCGTGG 60.501 50.000 0.00 0.00 36.57 4.94
214 215 4.341520 AGGGAAAATCCTAGTAGTAGCGTG 59.658 45.833 0.00 0.00 36.57 5.34
215 216 4.544683 AGGGAAAATCCTAGTAGTAGCGT 58.455 43.478 0.00 0.00 36.57 5.07
216 217 6.256912 CTAGGGAAAATCCTAGTAGTAGCG 57.743 45.833 9.19 0.00 47.00 4.26
245 246 0.986550 CACGGGGGAGGATAAACCCT 60.987 60.000 0.00 0.00 44.97 4.34
246 247 1.276859 ACACGGGGGAGGATAAACCC 61.277 60.000 0.00 0.00 44.89 4.11
247 248 0.107361 CACACGGGGGAGGATAAACC 60.107 60.000 0.00 0.00 39.35 3.27
248 249 0.746923 GCACACGGGGGAGGATAAAC 60.747 60.000 0.00 0.00 0.00 2.01
249 250 1.605453 GCACACGGGGGAGGATAAA 59.395 57.895 0.00 0.00 0.00 1.40
250 251 2.727392 CGCACACGGGGGAGGATAA 61.727 63.158 0.00 0.00 34.97 1.75
251 252 3.151710 CGCACACGGGGGAGGATA 61.152 66.667 0.00 0.00 34.97 2.59
268 269 4.398598 ACAACAAATCGCGCCGCC 62.399 61.111 2.28 0.00 0.00 6.13
269 270 2.869702 GACAACAAATCGCGCCGC 60.870 61.111 0.00 0.00 0.00 6.53
270 271 1.792057 GTGACAACAAATCGCGCCG 60.792 57.895 0.00 0.00 0.00 6.46
271 272 0.996727 GTGTGACAACAAATCGCGCC 60.997 55.000 0.00 0.00 38.27 6.53
272 273 1.320382 CGTGTGACAACAAATCGCGC 61.320 55.000 0.00 0.00 38.27 6.86
273 274 0.042535 ACGTGTGACAACAAATCGCG 60.043 50.000 0.00 0.00 38.27 5.87
274 275 2.099633 AACGTGTGACAACAAATCGC 57.900 45.000 0.00 0.00 38.27 4.58
275 276 5.494618 TCTAAAACGTGTGACAACAAATCG 58.505 37.500 0.00 0.00 38.27 3.34
276 277 7.352739 AGATCTAAAACGTGTGACAACAAATC 58.647 34.615 0.00 0.00 38.27 2.17
277 278 7.259290 AGATCTAAAACGTGTGACAACAAAT 57.741 32.000 0.00 0.00 38.27 2.32
278 279 6.671614 AGATCTAAAACGTGTGACAACAAA 57.328 33.333 0.00 0.00 38.27 2.83
279 280 7.956420 ATAGATCTAAAACGTGTGACAACAA 57.044 32.000 6.52 0.00 38.27 2.83
280 281 7.956420 AATAGATCTAAAACGTGTGACAACA 57.044 32.000 6.52 0.00 0.00 3.33
283 284 9.146984 CCTTAAATAGATCTAAAACGTGTGACA 57.853 33.333 6.52 0.00 0.00 3.58
284 285 8.114905 GCCTTAAATAGATCTAAAACGTGTGAC 58.885 37.037 6.52 0.00 0.00 3.67
285 286 8.038944 AGCCTTAAATAGATCTAAAACGTGTGA 58.961 33.333 6.52 0.00 0.00 3.58
286 287 8.197988 AGCCTTAAATAGATCTAAAACGTGTG 57.802 34.615 6.52 0.00 0.00 3.82
287 288 8.788325 AAGCCTTAAATAGATCTAAAACGTGT 57.212 30.769 6.52 0.00 0.00 4.49
288 289 8.879759 TGAAGCCTTAAATAGATCTAAAACGTG 58.120 33.333 6.52 0.00 0.00 4.49
289 290 9.444600 TTGAAGCCTTAAATAGATCTAAAACGT 57.555 29.630 6.52 0.00 0.00 3.99
296 297 9.466497 TTCAACATTGAAGCCTTAAATAGATCT 57.534 29.630 0.00 0.00 41.88 2.75
298 299 9.860898 GTTTCAACATTGAAGCCTTAAATAGAT 57.139 29.630 9.37 0.00 46.68 1.98
299 300 9.077885 AGTTTCAACATTGAAGCCTTAAATAGA 57.922 29.630 15.11 0.00 45.76 1.98
300 301 9.132521 CAGTTTCAACATTGAAGCCTTAAATAG 57.867 33.333 15.11 0.00 45.76 1.73
301 302 7.598493 GCAGTTTCAACATTGAAGCCTTAAATA 59.402 33.333 15.11 0.00 45.76 1.40
302 303 6.424812 GCAGTTTCAACATTGAAGCCTTAAAT 59.575 34.615 15.11 0.00 45.76 1.40
303 304 5.752955 GCAGTTTCAACATTGAAGCCTTAAA 59.247 36.000 15.11 0.00 45.76 1.52
304 305 5.288804 GCAGTTTCAACATTGAAGCCTTAA 58.711 37.500 15.11 0.00 45.76 1.85
305 306 4.261994 GGCAGTTTCAACATTGAAGCCTTA 60.262 41.667 20.63 1.59 45.31 2.69
306 307 3.493176 GGCAGTTTCAACATTGAAGCCTT 60.493 43.478 20.63 3.93 45.31 4.35
307 308 2.036346 GGCAGTTTCAACATTGAAGCCT 59.964 45.455 20.63 12.77 45.31 4.58
308 309 2.407090 GGCAGTTTCAACATTGAAGCC 58.593 47.619 16.03 16.03 45.76 4.35
309 310 3.005155 AGAGGCAGTTTCAACATTGAAGC 59.995 43.478 11.89 11.89 46.68 3.86
310 311 4.843220 AGAGGCAGTTTCAACATTGAAG 57.157 40.909 7.10 0.00 46.68 3.02
311 312 4.761739 CCTAGAGGCAGTTTCAACATTGAA 59.238 41.667 2.89 2.89 44.78 2.69
312 313 4.041567 TCCTAGAGGCAGTTTCAACATTGA 59.958 41.667 0.00 0.00 33.06 2.57
313 314 4.154918 GTCCTAGAGGCAGTTTCAACATTG 59.845 45.833 0.00 0.00 34.44 2.82
314 315 4.202461 TGTCCTAGAGGCAGTTTCAACATT 60.202 41.667 0.00 0.00 34.44 2.71
315 316 3.327757 TGTCCTAGAGGCAGTTTCAACAT 59.672 43.478 0.00 0.00 34.44 2.71
316 317 2.703536 TGTCCTAGAGGCAGTTTCAACA 59.296 45.455 0.00 0.00 34.44 3.33
317 318 3.402628 TGTCCTAGAGGCAGTTTCAAC 57.597 47.619 0.00 0.00 34.44 3.18
318 319 4.326826 CATTGTCCTAGAGGCAGTTTCAA 58.673 43.478 0.00 0.00 34.44 2.69
319 320 3.307691 CCATTGTCCTAGAGGCAGTTTCA 60.308 47.826 0.00 0.00 34.44 2.69
320 321 3.274288 CCATTGTCCTAGAGGCAGTTTC 58.726 50.000 0.00 0.00 34.44 2.78
321 322 2.644798 ACCATTGTCCTAGAGGCAGTTT 59.355 45.455 0.00 0.00 34.44 2.66
322 323 2.237392 GACCATTGTCCTAGAGGCAGTT 59.763 50.000 0.00 0.00 35.34 3.16
323 324 1.834263 GACCATTGTCCTAGAGGCAGT 59.166 52.381 0.00 0.00 35.34 4.40
324 325 2.611225 GACCATTGTCCTAGAGGCAG 57.389 55.000 0.00 0.00 35.34 4.85
344 345 1.723608 TTTGTGCACGTGCCTGGAAG 61.724 55.000 35.72 0.00 41.18 3.46
345 346 1.723608 CTTTGTGCACGTGCCTGGAA 61.724 55.000 35.72 22.66 41.18 3.53
346 347 2.124529 TTTGTGCACGTGCCTGGA 60.125 55.556 35.72 16.34 41.18 3.86
347 348 2.332514 CTTTGTGCACGTGCCTGG 59.667 61.111 35.72 17.85 41.18 4.45
348 349 2.003658 AACCTTTGTGCACGTGCCTG 62.004 55.000 35.72 20.14 41.18 4.85
349 350 1.319614 AAACCTTTGTGCACGTGCCT 61.320 50.000 35.72 9.62 41.18 4.75
350 351 0.869880 GAAACCTTTGTGCACGTGCC 60.870 55.000 35.72 26.31 41.18 5.01
371 372 4.318332 CTTGACCTTGTTGATGACAGCTA 58.682 43.478 0.00 0.00 39.94 3.32
400 401 3.500448 TTATTGCCGCTCCCATATCAA 57.500 42.857 0.00 0.00 0.00 2.57
401 402 3.411446 CTTTATTGCCGCTCCCATATCA 58.589 45.455 0.00 0.00 0.00 2.15
406 407 1.752694 GGCTTTATTGCCGCTCCCA 60.753 57.895 0.00 0.00 43.74 4.37
415 416 2.671396 AGTCGCTAACGTGGCTTTATTG 59.329 45.455 11.12 0.00 41.18 1.90
416 417 2.968675 AGTCGCTAACGTGGCTTTATT 58.031 42.857 11.12 0.00 41.18 1.40
418 419 2.063266 CAAGTCGCTAACGTGGCTTTA 58.937 47.619 11.12 0.00 42.53 1.85
433 434 5.106237 ACCACTATCGTAGTCAGAACAAGTC 60.106 44.000 0.00 0.00 36.76 3.01
437 438 4.521639 ACAACCACTATCGTAGTCAGAACA 59.478 41.667 0.00 0.00 36.76 3.18
439 440 5.618418 CGAACAACCACTATCGTAGTCAGAA 60.618 44.000 0.00 0.00 36.76 3.02
446 447 4.968812 TCATCGAACAACCACTATCGTA 57.031 40.909 0.00 0.00 36.70 3.43
449 450 3.871006 TGCATCATCGAACAACCACTATC 59.129 43.478 0.00 0.00 0.00 2.08
462 463 1.957668 TCAAGGACCATGCATCATCG 58.042 50.000 0.00 0.00 0.00 3.84
467 468 7.844493 AATAATTACATCAAGGACCATGCAT 57.156 32.000 0.00 0.00 0.00 3.96
497 498 7.833285 ATAACAAGTACAAACCACCTCAAAT 57.167 32.000 0.00 0.00 0.00 2.32
604 628 4.201608 GCATATGCAACATTTTGAACACCG 60.202 41.667 22.84 0.00 41.59 4.94
628 652 5.448654 TCTATTCTTGGGTTGCTATGCATT 58.551 37.500 3.54 0.00 38.76 3.56
657 682 1.135053 GCTCCGGTGTTTAGAGTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
848 873 1.202580 CGATCCAGGTGATGAGGAACC 60.203 57.143 0.00 0.00 34.62 3.62
856 881 1.487976 ACATTGCTCGATCCAGGTGAT 59.512 47.619 0.00 0.00 36.01 3.06
914 939 1.672881 CCTCGTGATGGCCTTGATTTC 59.327 52.381 3.32 0.00 0.00 2.17
985 1010 4.470602 CCCTCCATGGTTCCTTTATTACC 58.529 47.826 12.58 0.00 0.00 2.85
1044 1069 2.347490 GCCAGGAAGAAGACGGCA 59.653 61.111 0.00 0.00 42.50 5.69
1081 1106 1.736645 CGAACTCGCCGATGTTGGT 60.737 57.895 6.66 0.00 0.00 3.67
1149 1174 2.313427 GGGGTTGGGATGGTAGGCA 61.313 63.158 0.00 0.00 0.00 4.75
1537 1562 1.153066 TCTTGTTGCTGCCGACCAA 60.153 52.632 0.00 0.00 0.00 3.67
1617 1642 1.634757 GGATGATCACGTTGTGCGCA 61.635 55.000 5.66 5.66 46.11 6.09
1857 1882 0.306533 GCATGACGTCGTTGTGGTTT 59.693 50.000 7.76 0.00 0.00 3.27
2055 2080 6.183361 CCCCATCGGCACCTGATAATTATATA 60.183 42.308 0.00 0.00 0.00 0.86
2056 2081 5.397899 CCCCATCGGCACCTGATAATTATAT 60.398 44.000 0.00 0.00 0.00 0.86
2057 2082 4.080582 CCCCATCGGCACCTGATAATTATA 60.081 45.833 0.00 0.00 0.00 0.98
2058 2083 3.308402 CCCCATCGGCACCTGATAATTAT 60.308 47.826 0.00 0.00 0.00 1.28
2235 2260 0.471211 ACCCAGTTCTTCCACTCCGA 60.471 55.000 0.00 0.00 0.00 4.55
2339 2364 3.740128 CTTGGGCGGGATGAGGTCG 62.740 68.421 0.00 0.00 0.00 4.79
2483 2508 9.598517 TTGAGTAAAAGAATTGAACAAAGCAAT 57.401 25.926 0.00 0.00 37.56 3.56
2485 2510 8.994429 TTTGAGTAAAAGAATTGAACAAAGCA 57.006 26.923 0.00 0.00 0.00 3.91
2528 2559 9.696572 AGACTACTCAAATGTCCTAGTAATACA 57.303 33.333 0.00 0.00 0.00 2.29
2531 2562 8.838365 CGTAGACTACTCAAATGTCCTAGTAAT 58.162 37.037 10.82 0.00 0.00 1.89
2532 2563 7.281774 CCGTAGACTACTCAAATGTCCTAGTAA 59.718 40.741 10.82 0.00 0.00 2.24
2596 2627 2.780643 CTGACACGGCGAATGCAG 59.219 61.111 16.62 11.46 45.35 4.41
2628 2659 1.326213 CGTCATCCACTCTGGCCTCT 61.326 60.000 3.32 0.00 37.47 3.69
2633 2664 0.174389 CTGTCCGTCATCCACTCTGG 59.826 60.000 0.00 0.00 39.43 3.86
2634 2665 1.133982 CTCTGTCCGTCATCCACTCTG 59.866 57.143 0.00 0.00 0.00 3.35
2636 2667 1.133407 GTCTCTGTCCGTCATCCACTC 59.867 57.143 0.00 0.00 0.00 3.51
2637 2668 1.178276 GTCTCTGTCCGTCATCCACT 58.822 55.000 0.00 0.00 0.00 4.00
2638 2669 0.888619 TGTCTCTGTCCGTCATCCAC 59.111 55.000 0.00 0.00 0.00 4.02
2639 2670 1.272490 GTTGTCTCTGTCCGTCATCCA 59.728 52.381 0.00 0.00 0.00 3.41
2642 2673 2.300152 ACATGTTGTCTCTGTCCGTCAT 59.700 45.455 0.00 0.00 0.00 3.06
2643 2674 1.686587 ACATGTTGTCTCTGTCCGTCA 59.313 47.619 0.00 0.00 0.00 4.35
2644 2675 2.440539 ACATGTTGTCTCTGTCCGTC 57.559 50.000 0.00 0.00 0.00 4.79
2645 2676 2.910688 AACATGTTGTCTCTGTCCGT 57.089 45.000 11.07 0.00 0.00 4.69
2646 2677 3.185188 CAGAAACATGTTGTCTCTGTCCG 59.815 47.826 22.46 5.45 0.00 4.79
2647 2678 4.130118 ACAGAAACATGTTGTCTCTGTCC 58.870 43.478 27.38 6.42 32.31 4.02
2648 2679 5.053145 AGACAGAAACATGTTGTCTCTGTC 58.947 41.667 37.09 37.09 46.24 3.51
2649 2680 5.028549 AGACAGAAACATGTTGTCTCTGT 57.971 39.130 30.76 30.76 46.24 3.41
2650 2681 5.636965 CCTAGACAGAAACATGTTGTCTCTG 59.363 44.000 27.01 26.68 46.24 3.35
2656 2687 5.352569 GGATGACCTAGACAGAAACATGTTG 59.647 44.000 12.82 2.82 32.25 3.33
2715 2746 3.220110 CCCTCTTCAATATGTGCATGCT 58.780 45.455 20.33 0.40 0.00 3.79
2723 2754 2.366916 AGTCTCGGCCCTCTTCAATATG 59.633 50.000 0.00 0.00 0.00 1.78
2753 2784 9.206870 AGACGATAAACCTTAAAACAATCGTTA 57.793 29.630 8.61 0.00 45.46 3.18
2756 2787 7.515643 ACAGACGATAAACCTTAAAACAATCG 58.484 34.615 0.00 0.00 40.28 3.34
2810 2845 3.797451 TTGCATGTTCAACACACACAT 57.203 38.095 0.00 0.00 38.61 3.21
2811 2846 3.797451 ATTGCATGTTCAACACACACA 57.203 38.095 0.00 0.00 38.61 3.72
2812 2847 5.221880 ACATATTGCATGTTCAACACACAC 58.778 37.500 0.00 0.00 38.61 3.82
2821 2856 6.017605 CCTCCTCTGTAACATATTGCATGTTC 60.018 42.308 7.42 1.94 41.81 3.18
2850 2885 0.110688 CACGCCAAGTGTCAATGACG 60.111 55.000 9.00 0.00 45.51 4.35
2874 2912 1.831389 CGTCAAGCACGTCAAGGGTG 61.831 60.000 0.00 0.00 44.07 4.61
2875 2913 1.594293 CGTCAAGCACGTCAAGGGT 60.594 57.895 0.00 0.00 44.07 4.34
2884 2922 1.137513 GTAGTCACCACGTCAAGCAC 58.862 55.000 0.00 0.00 0.00 4.40
2885 2923 1.000607 GAGTAGTCACCACGTCAAGCA 60.001 52.381 0.00 0.00 0.00 3.91
2888 2926 2.486982 GCTAGAGTAGTCACCACGTCAA 59.513 50.000 0.00 0.00 0.00 3.18
2889 2927 2.082231 GCTAGAGTAGTCACCACGTCA 58.918 52.381 0.00 0.00 0.00 4.35
2890 2928 1.062294 CGCTAGAGTAGTCACCACGTC 59.938 57.143 0.00 0.00 0.00 4.34
2892 2930 1.085091 ACGCTAGAGTAGTCACCACG 58.915 55.000 0.00 0.99 0.00 4.94
2893 2931 2.613133 CCTACGCTAGAGTAGTCACCAC 59.387 54.545 25.90 0.00 41.76 4.16
2894 2932 2.915349 CCTACGCTAGAGTAGTCACCA 58.085 52.381 25.90 0.00 41.76 4.17
2895 2933 1.603326 GCCTACGCTAGAGTAGTCACC 59.397 57.143 25.90 11.88 41.76 4.02
2896 2934 2.563702 AGCCTACGCTAGAGTAGTCAC 58.436 52.381 25.90 17.22 46.08 3.67
2908 2946 1.079503 CCTCAACAGAAAGCCTACGC 58.920 55.000 0.00 0.00 0.00 4.42
2909 2947 2.457366 ACCTCAACAGAAAGCCTACG 57.543 50.000 0.00 0.00 0.00 3.51
2910 2948 3.477530 ACAACCTCAACAGAAAGCCTAC 58.522 45.455 0.00 0.00 0.00 3.18
2911 2949 3.857157 ACAACCTCAACAGAAAGCCTA 57.143 42.857 0.00 0.00 0.00 3.93
2912 2950 2.736670 ACAACCTCAACAGAAAGCCT 57.263 45.000 0.00 0.00 0.00 4.58
2913 2951 4.134563 TCTAACAACCTCAACAGAAAGCC 58.865 43.478 0.00 0.00 0.00 4.35
2914 2952 5.057149 TCTCTAACAACCTCAACAGAAAGC 58.943 41.667 0.00 0.00 0.00 3.51
2915 2953 8.091449 ACTATCTCTAACAACCTCAACAGAAAG 58.909 37.037 0.00 0.00 0.00 2.62
2916 2954 7.963532 ACTATCTCTAACAACCTCAACAGAAA 58.036 34.615 0.00 0.00 0.00 2.52
2917 2955 7.540474 ACTATCTCTAACAACCTCAACAGAA 57.460 36.000 0.00 0.00 0.00 3.02
2918 2956 7.451877 AGAACTATCTCTAACAACCTCAACAGA 59.548 37.037 0.00 0.00 0.00 3.41
2965 3010 3.265995 GGGAGGTTACAGGGAGAATCAAA 59.734 47.826 0.00 0.00 36.25 2.69
2967 3012 2.478292 GGGAGGTTACAGGGAGAATCA 58.522 52.381 0.00 0.00 36.25 2.57
2975 3020 2.506065 CGAGAGGGGAGGTTACAGG 58.494 63.158 0.00 0.00 0.00 4.00
3021 3066 5.963214 ATATTGATGGGATGATCGATGGA 57.037 39.130 0.54 0.00 30.39 3.41
3023 3068 9.939802 ATGTATATATTGATGGGATGATCGATG 57.060 33.333 0.54 0.00 30.39 3.84
3030 3075 5.471116 CCCGCATGTATATATTGATGGGATG 59.529 44.000 16.29 8.05 32.35 3.51
3031 3076 5.624159 CCCGCATGTATATATTGATGGGAT 58.376 41.667 16.29 0.00 32.35 3.85
3032 3077 4.685848 GCCCGCATGTATATATTGATGGGA 60.686 45.833 19.63 0.00 32.35 4.37
3035 3090 5.363101 AGAGCCCGCATGTATATATTGATG 58.637 41.667 0.00 0.00 0.00 3.07
3045 3100 1.033202 TACACGAGAGCCCGCATGTA 61.033 55.000 0.00 0.00 0.00 2.29
3069 3124 9.827411 GTAAAGAGTTATGAAAATGTCTCAACC 57.173 33.333 0.00 0.00 0.00 3.77
3088 3143 6.219473 CCTGCTCTGTATACCATGTAAAGAG 58.781 44.000 0.00 5.23 36.84 2.85
3141 3196 3.760580 AGGGTTGAGTGAAGAGTTGAG 57.239 47.619 0.00 0.00 0.00 3.02
3147 3202 4.347876 TGATGAAGAAGGGTTGAGTGAAGA 59.652 41.667 0.00 0.00 0.00 2.87
3150 3205 4.042062 ACATGATGAAGAAGGGTTGAGTGA 59.958 41.667 0.00 0.00 0.00 3.41
3154 3209 3.330405 TGGACATGATGAAGAAGGGTTGA 59.670 43.478 0.00 0.00 0.00 3.18
3161 3216 2.912295 TGGAGGTGGACATGATGAAGAA 59.088 45.455 0.00 0.00 0.00 2.52
3162 3217 2.237143 GTGGAGGTGGACATGATGAAGA 59.763 50.000 0.00 0.00 0.00 2.87
3163 3218 2.636830 GTGGAGGTGGACATGATGAAG 58.363 52.381 0.00 0.00 0.00 3.02
3164 3219 1.281867 GGTGGAGGTGGACATGATGAA 59.718 52.381 0.00 0.00 0.00 2.57
3182 3237 2.148723 TTGGATTGGATGGGTGCGGT 62.149 55.000 0.00 0.00 0.00 5.68
3184 3239 1.666209 GGTTGGATTGGATGGGTGCG 61.666 60.000 0.00 0.00 0.00 5.34
3201 3256 2.769663 TCAGTGGTGTTGTAGTTGAGGT 59.230 45.455 0.00 0.00 0.00 3.85
3218 3273 1.068472 CGTTCGAGTAAGTGGCTCAGT 60.068 52.381 0.00 0.00 33.45 3.41
3232 3287 4.823157 TCCAAAGGACATAATTCGTTCGA 58.177 39.130 0.00 0.00 0.00 3.71
3235 3290 5.336451 GGCTTTCCAAAGGACATAATTCGTT 60.336 40.000 1.32 0.00 36.53 3.85
3274 3329 0.393808 ACAAGCCGACGCCCATTATT 60.394 50.000 0.00 0.00 34.57 1.40
3285 3340 2.488937 TCGATGTAGTTGTACAAGCCGA 59.511 45.455 8.98 8.80 42.54 5.54
3296 3351 4.637276 TCAATGGTGTTGTCGATGTAGTT 58.363 39.130 0.00 0.00 0.00 2.24
3297 3352 4.245660 CTCAATGGTGTTGTCGATGTAGT 58.754 43.478 0.00 0.00 0.00 2.73
3305 3360 1.168714 GGCTCCTCAATGGTGTTGTC 58.831 55.000 0.00 0.00 37.07 3.18
3327 3382 3.084039 TCTTTGGTGGTGATGATCTTGC 58.916 45.455 0.00 0.00 0.00 4.01
3364 3419 0.396139 CATGGTTGGGGATGACCTGG 60.396 60.000 0.00 0.00 40.03 4.45
3391 3446 2.915869 TGATCCTGGACAAACTAGGGT 58.084 47.619 0.00 0.00 45.63 4.34
3396 3451 5.126061 GCAATATGTTGATCCTGGACAAACT 59.874 40.000 18.79 10.47 37.53 2.66
3398 3453 4.402155 GGCAATATGTTGATCCTGGACAAA 59.598 41.667 6.35 0.00 37.53 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.