Multiple sequence alignment - TraesCS7A01G363900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G363900 chr7A 100.000 3102 0 0 1 3102 538364699 538361598 0.000000e+00 5729.0
1 TraesCS7A01G363900 chr7A 97.468 158 4 0 2818 2975 83784837 83784994 1.420000e-68 270.0
2 TraesCS7A01G363900 chr7D 92.926 2587 142 24 239 2799 461773401 461775972 0.000000e+00 3725.0
3 TraesCS7A01G363900 chr7D 90.698 129 12 0 1 129 461773207 461773335 4.110000e-39 172.0
4 TraesCS7A01G363900 chr7D 89.691 97 9 1 2982 3077 461775976 461776072 4.200000e-24 122.0
5 TraesCS7A01G363900 chr7B 93.111 2192 105 19 317 2467 484589982 484592168 0.000000e+00 3169.0
6 TraesCS7A01G363900 chr7B 84.000 450 43 15 2385 2815 484592168 484592607 3.720000e-109 405.0
7 TraesCS7A01G363900 chr7B 89.313 131 12 1 1 129 484589575 484589705 2.480000e-36 163.0
8 TraesCS7A01G363900 chr7B 91.579 95 6 2 239 332 484589771 484589864 2.510000e-26 130.0
9 TraesCS7A01G363900 chr7B 95.161 62 2 1 3017 3077 484592644 484592705 2.550000e-16 97.1
10 TraesCS7A01G363900 chr7B 84.286 70 5 5 2162 2225 741645570 741645501 2.580000e-06 63.9
11 TraesCS7A01G363900 chr5A 79.295 454 59 16 2162 2580 53455355 53455808 5.060000e-73 285.0
12 TraesCS7A01G363900 chr5A 78.681 455 60 18 2162 2580 53374303 53374756 5.100000e-68 268.0
13 TraesCS7A01G363900 chr4D 98.137 161 3 0 2818 2978 23322723 23322883 6.550000e-72 281.0
14 TraesCS7A01G363900 chr5D 97.516 161 4 0 2818 2978 62177276 62177116 3.050000e-70 276.0
15 TraesCS7A01G363900 chr2D 97.484 159 4 0 2817 2975 459298701 459298859 3.940000e-69 272.0
16 TraesCS7A01G363900 chr5B 97.468 158 4 0 2818 2975 574956448 574956605 1.420000e-68 270.0
17 TraesCS7A01G363900 chr3D 96.894 161 5 0 2818 2978 376923640 376923800 1.420000e-68 270.0
18 TraesCS7A01G363900 chr3D 96.894 161 5 0 2818 2978 422517791 422517631 1.420000e-68 270.0
19 TraesCS7A01G363900 chr1D 96.894 161 5 0 2818 2978 86918683 86918523 1.420000e-68 270.0
20 TraesCS7A01G363900 chr3A 94.706 170 9 0 2809 2978 77542616 77542447 6.600000e-67 265.0
21 TraesCS7A01G363900 chr4B 83.516 182 22 7 2162 2335 251469295 251469114 2.480000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G363900 chr7A 538361598 538364699 3101 True 5729.000000 5729 100.0000 1 3102 1 chr7A.!!$R1 3101
1 TraesCS7A01G363900 chr7D 461773207 461776072 2865 False 1339.666667 3725 91.1050 1 3077 3 chr7D.!!$F1 3076
2 TraesCS7A01G363900 chr7B 484589575 484592705 3130 False 792.820000 3169 90.6328 1 3077 5 chr7B.!!$F1 3076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 165 0.108585 ACGACCCATGTCAACTTGCT 59.891 50.000 0.0 0.0 41.85 3.91 F
163 166 1.238439 CGACCCATGTCAACTTGCTT 58.762 50.000 0.0 0.0 41.85 3.91 F
248 268 1.461127 CAACTTGTAACGAGAGGCAGC 59.539 52.381 0.0 0.0 0.00 5.25 F
1463 1637 0.811281 GCCATAAGCCACAGTTCACC 59.189 55.000 0.0 0.0 34.35 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1443 1615 0.447801 GTGAACTGTGGCTTATGGCG 59.552 55.000 0.0 0.0 42.94 5.69 R
1444 1616 0.811281 GGTGAACTGTGGCTTATGGC 59.189 55.000 0.0 0.0 40.90 4.40 R
1729 1903 1.349026 AGTATGATTCCCCCAGCATCG 59.651 52.381 0.0 0.0 0.00 3.84 R
2949 3241 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.257039 ATCACATGAGCCTCAACCCC 59.743 55.000 0.00 0.00 0.00 4.95
48 49 2.440409 CTCAACCCCTCAACAGGAATG 58.560 52.381 0.00 0.00 43.65 2.67
88 91 9.217278 GTGTTCAGATATCAGATGCATCTTATT 57.783 33.333 26.70 15.76 34.22 1.40
97 100 8.773033 ATCAGATGCATCTTATTTTTAGGGTT 57.227 30.769 26.70 4.05 34.22 4.11
115 118 3.057734 GGTTATTGATCGGCGGTCTTAG 58.942 50.000 22.09 0.00 0.00 2.18
117 120 4.365723 GTTATTGATCGGCGGTCTTAGAA 58.634 43.478 22.09 9.96 0.00 2.10
129 132 3.997021 CGGTCTTAGAAACACAGCAGATT 59.003 43.478 0.00 0.00 0.00 2.40
132 135 6.398918 GGTCTTAGAAACACAGCAGATTCTA 58.601 40.000 0.00 0.00 34.24 2.10
133 136 6.533367 GGTCTTAGAAACACAGCAGATTCTAG 59.467 42.308 0.00 0.00 36.18 2.43
134 137 6.035542 GTCTTAGAAACACAGCAGATTCTAGC 59.964 42.308 0.00 0.00 36.18 3.42
135 138 3.604582 AGAAACACAGCAGATTCTAGCC 58.395 45.455 4.99 0.00 30.69 3.93
136 139 2.409948 AACACAGCAGATTCTAGCCC 57.590 50.000 4.99 0.00 0.00 5.19
137 140 0.543749 ACACAGCAGATTCTAGCCCC 59.456 55.000 4.99 0.00 0.00 5.80
138 141 0.531532 CACAGCAGATTCTAGCCCCG 60.532 60.000 4.99 0.00 0.00 5.73
139 142 1.596477 CAGCAGATTCTAGCCCCGC 60.596 63.158 4.99 0.00 0.00 6.13
140 143 2.281139 GCAGATTCTAGCCCCGCC 60.281 66.667 0.00 0.00 0.00 6.13
141 144 2.812619 GCAGATTCTAGCCCCGCCT 61.813 63.158 0.00 0.00 0.00 5.52
142 145 1.472662 GCAGATTCTAGCCCCGCCTA 61.473 60.000 0.00 0.00 0.00 3.93
143 146 1.048601 CAGATTCTAGCCCCGCCTAA 58.951 55.000 0.00 0.00 0.00 2.69
144 147 1.049402 AGATTCTAGCCCCGCCTAAC 58.951 55.000 0.00 0.00 0.00 2.34
145 148 0.319641 GATTCTAGCCCCGCCTAACG 60.320 60.000 0.00 0.00 43.15 3.18
156 159 3.543884 GCCTAACGACCCATGTCAA 57.456 52.632 0.00 0.00 41.85 3.18
157 160 1.084289 GCCTAACGACCCATGTCAAC 58.916 55.000 0.00 0.00 41.85 3.18
158 161 1.338769 GCCTAACGACCCATGTCAACT 60.339 52.381 0.00 0.00 41.85 3.16
159 162 2.874457 GCCTAACGACCCATGTCAACTT 60.874 50.000 0.00 0.00 41.85 2.66
160 163 2.742053 CCTAACGACCCATGTCAACTTG 59.258 50.000 0.00 0.00 41.85 3.16
161 164 0.951558 AACGACCCATGTCAACTTGC 59.048 50.000 0.00 0.00 41.85 4.01
162 165 0.108585 ACGACCCATGTCAACTTGCT 59.891 50.000 0.00 0.00 41.85 3.91
163 166 1.238439 CGACCCATGTCAACTTGCTT 58.762 50.000 0.00 0.00 41.85 3.91
164 167 1.608590 CGACCCATGTCAACTTGCTTT 59.391 47.619 0.00 0.00 41.85 3.51
165 168 2.350772 CGACCCATGTCAACTTGCTTTC 60.351 50.000 0.00 0.00 41.85 2.62
166 169 2.887152 GACCCATGTCAACTTGCTTTCT 59.113 45.455 0.00 0.00 41.37 2.52
167 170 2.624838 ACCCATGTCAACTTGCTTTCTG 59.375 45.455 0.00 0.00 0.00 3.02
168 171 2.624838 CCCATGTCAACTTGCTTTCTGT 59.375 45.455 0.00 0.00 0.00 3.41
169 172 3.551454 CCCATGTCAACTTGCTTTCTGTG 60.551 47.826 0.00 0.00 0.00 3.66
170 173 3.551454 CCATGTCAACTTGCTTTCTGTGG 60.551 47.826 0.00 0.00 0.00 4.17
171 174 2.023673 TGTCAACTTGCTTTCTGTGGG 58.976 47.619 0.00 0.00 0.00 4.61
172 175 2.024414 GTCAACTTGCTTTCTGTGGGT 58.976 47.619 0.00 0.00 0.00 4.51
173 176 3.211045 GTCAACTTGCTTTCTGTGGGTA 58.789 45.455 0.00 0.00 0.00 3.69
174 177 3.003378 GTCAACTTGCTTTCTGTGGGTAC 59.997 47.826 0.00 0.00 0.00 3.34
175 178 2.948979 CAACTTGCTTTCTGTGGGTACA 59.051 45.455 0.00 0.00 35.08 2.90
176 179 3.290948 ACTTGCTTTCTGTGGGTACAA 57.709 42.857 0.00 0.00 36.14 2.41
177 180 3.626930 ACTTGCTTTCTGTGGGTACAAA 58.373 40.909 0.00 0.00 36.14 2.83
178 181 4.020543 ACTTGCTTTCTGTGGGTACAAAA 58.979 39.130 0.00 0.00 36.14 2.44
179 182 4.097892 ACTTGCTTTCTGTGGGTACAAAAG 59.902 41.667 0.00 0.00 37.63 2.27
180 183 2.955660 TGCTTTCTGTGGGTACAAAAGG 59.044 45.455 0.00 0.00 36.51 3.11
181 184 2.956333 GCTTTCTGTGGGTACAAAAGGT 59.044 45.455 0.00 0.00 36.51 3.50
182 185 3.383505 GCTTTCTGTGGGTACAAAAGGTT 59.616 43.478 0.00 0.00 36.51 3.50
183 186 4.581409 GCTTTCTGTGGGTACAAAAGGTTA 59.419 41.667 0.00 0.00 36.51 2.85
184 187 5.068067 GCTTTCTGTGGGTACAAAAGGTTAA 59.932 40.000 0.00 0.00 36.51 2.01
185 188 6.453926 TTTCTGTGGGTACAAAAGGTTAAC 57.546 37.500 0.00 0.00 36.14 2.01
186 189 5.113446 TCTGTGGGTACAAAAGGTTAACA 57.887 39.130 8.10 0.00 36.14 2.41
187 190 5.507637 TCTGTGGGTACAAAAGGTTAACAA 58.492 37.500 8.10 0.00 36.14 2.83
188 191 5.950549 TCTGTGGGTACAAAAGGTTAACAAA 59.049 36.000 8.10 0.00 36.14 2.83
189 192 6.436532 TCTGTGGGTACAAAAGGTTAACAAAA 59.563 34.615 8.10 0.00 36.14 2.44
190 193 6.396450 TGTGGGTACAAAAGGTTAACAAAAC 58.604 36.000 8.10 0.00 32.88 2.43
191 194 6.210984 TGTGGGTACAAAAGGTTAACAAAACT 59.789 34.615 8.10 0.00 32.88 2.66
192 195 7.395489 TGTGGGTACAAAAGGTTAACAAAACTA 59.605 33.333 8.10 0.00 32.88 2.24
193 196 8.249638 GTGGGTACAAAAGGTTAACAAAACTAA 58.750 33.333 8.10 0.00 0.00 2.24
194 197 8.810041 TGGGTACAAAAGGTTAACAAAACTAAA 58.190 29.630 8.10 0.00 0.00 1.85
227 230 7.741554 AAGGCTATCTAATCTATTAGTGGGG 57.258 40.000 9.06 1.97 40.41 4.96
228 231 5.663556 AGGCTATCTAATCTATTAGTGGGGC 59.336 44.000 9.06 10.98 40.41 5.80
230 233 6.070194 GGCTATCTAATCTATTAGTGGGGCAA 60.070 42.308 9.06 0.00 40.41 4.52
231 234 6.819146 GCTATCTAATCTATTAGTGGGGCAAC 59.181 42.308 9.06 0.00 40.41 4.17
232 235 7.310734 GCTATCTAATCTATTAGTGGGGCAACT 60.311 40.741 9.06 0.00 40.41 3.16
233 236 6.824958 TCTAATCTATTAGTGGGGCAACTT 57.175 37.500 9.06 0.00 40.41 2.66
234 237 6.591935 TCTAATCTATTAGTGGGGCAACTTG 58.408 40.000 9.06 0.00 40.41 3.16
236 239 5.968676 ATCTATTAGTGGGGCAACTTGTA 57.031 39.130 0.00 0.00 0.00 2.41
237 240 5.765576 TCTATTAGTGGGGCAACTTGTAA 57.234 39.130 0.00 0.00 0.00 2.41
248 268 1.461127 CAACTTGTAACGAGAGGCAGC 59.539 52.381 0.00 0.00 0.00 5.25
274 294 1.768870 GCTAACCATTAGGAGCTGGGA 59.231 52.381 0.00 0.00 36.82 4.37
318 339 3.008485 CCAGAGGGGCTCAATAGTAATCC 59.992 52.174 0.00 0.00 32.06 3.01
319 472 2.900546 AGAGGGGCTCAATAGTAATCCG 59.099 50.000 0.00 0.00 32.06 4.18
565 719 3.002583 TCCCTGATCTGTGCCGCA 61.003 61.111 0.00 0.00 0.00 5.69
663 817 6.427441 TGCCACCACCATTCACTTTTATATA 58.573 36.000 0.00 0.00 0.00 0.86
702 856 3.873910 GTGAATAGGCACCATGTGTAGT 58.126 45.455 0.00 0.00 35.75 2.73
741 895 8.152898 CACCATGATGATTAGTTCTGAAGGATA 58.847 37.037 0.00 0.00 0.00 2.59
810 981 7.402054 AGTGAAATGTACCTGGACATGATTTA 58.598 34.615 0.00 0.00 39.99 1.40
812 983 8.519526 GTGAAATGTACCTGGACATGATTTAAA 58.480 33.333 0.00 0.00 39.99 1.52
818 989 9.693739 TGTACCTGGACATGATTTAAAATATGT 57.306 29.630 16.16 16.16 36.54 2.29
819 990 9.950680 GTACCTGGACATGATTTAAAATATGTG 57.049 33.333 19.37 11.03 34.18 3.21
822 993 7.857389 CCTGGACATGATTTAAAATATGTGTCG 59.143 37.037 19.37 10.36 36.49 4.35
825 996 8.181573 GGACATGATTTAAAATATGTGTCGTGT 58.818 33.333 19.37 14.52 37.14 4.49
827 998 7.967854 ACATGATTTAAAATATGTGTCGTGTGG 59.032 33.333 15.70 0.00 34.23 4.17
854 1025 6.820152 AGCAAGCTTTCTTTCATTTTCAAACT 59.180 30.769 0.00 0.00 0.00 2.66
874 1045 6.668541 AACTACATCATGTTCTGAAATCCG 57.331 37.500 0.00 0.00 37.44 4.18
876 1047 4.220693 ACATCATGTTCTGAAATCCGGA 57.779 40.909 6.61 6.61 37.44 5.14
881 1052 6.588719 TCATGTTCTGAAATCCGGAAAAAT 57.411 33.333 9.01 0.00 41.49 1.82
882 1053 7.695480 TCATGTTCTGAAATCCGGAAAAATA 57.305 32.000 9.01 0.00 41.49 1.40
905 1076 3.953712 TTTCCTAGCATTCGTGTCTCA 57.046 42.857 0.00 0.00 0.00 3.27
958 1129 3.347077 AGCAGATCAACTTGAGAAGGG 57.653 47.619 0.00 0.00 0.00 3.95
985 1156 5.741425 CACATTTTGCTAGACATCCATACG 58.259 41.667 0.00 0.00 0.00 3.06
993 1164 2.893637 AGACATCCATACGCAGTGTTC 58.106 47.619 0.00 0.00 45.73 3.18
1032 1203 4.755629 CCAGTGATAAAGATGGATGAGCTG 59.244 45.833 0.00 0.00 34.60 4.24
1060 1231 4.661125 CGAGAAGAGATCAGAGACACTTG 58.339 47.826 0.00 0.00 0.00 3.16
1181 1352 3.038017 CACTGTTGTCATTTGTTCTGCG 58.962 45.455 0.00 0.00 0.00 5.18
1243 1415 2.303022 GACCTCATGGACAGAACCAAGA 59.697 50.000 0.00 0.00 43.47 3.02
1320 1492 3.769300 AGATAGCAAAAACCATTGGTCCC 59.231 43.478 9.22 0.00 41.04 4.46
1350 1522 3.117701 TCACCTCAAATGTTGACTGGGAA 60.118 43.478 2.72 0.00 35.46 3.97
1371 1543 5.434352 AATGCAGCTTCATGTATCATCAC 57.566 39.130 0.00 0.00 0.00 3.06
1463 1637 0.811281 GCCATAAGCCACAGTTCACC 59.189 55.000 0.00 0.00 34.35 4.02
1473 1647 1.003580 CACAGTTCACCTGCCCAGTAT 59.996 52.381 0.00 0.00 45.68 2.12
1475 1649 2.910319 ACAGTTCACCTGCCCAGTATAA 59.090 45.455 0.00 0.00 45.68 0.98
1487 1661 6.321821 TGCCCAGTATAACAGGAAATTAGT 57.678 37.500 0.00 0.00 0.00 2.24
1693 1867 1.749063 GCAAAATACCCCAGGTGTAGC 59.251 52.381 0.00 0.00 36.19 3.58
1729 1903 2.342648 GGACTCCGTGGACACACC 59.657 66.667 3.12 0.00 44.86 4.16
1921 2095 4.553330 TCAGGTACTTCCCAATCAGAAC 57.447 45.455 0.00 0.00 34.60 3.01
1963 2137 3.431626 CGACATTCTATAACCCAGGTGCA 60.432 47.826 0.00 0.00 0.00 4.57
2083 2257 4.828829 AGGTATCAAGGTTCCAAACTACG 58.171 43.478 0.00 0.00 0.00 3.51
2106 2280 6.655003 ACGAAGATGGTATTCAAATGACTTGT 59.345 34.615 0.00 0.00 36.34 3.16
2130 2304 4.214758 GTCAAAAGCCACTTTATGTACCGT 59.785 41.667 0.00 0.00 31.99 4.83
2132 2306 2.685850 AGCCACTTTATGTACCGTCC 57.314 50.000 0.00 0.00 0.00 4.79
2133 2307 2.185387 AGCCACTTTATGTACCGTCCT 58.815 47.619 0.00 0.00 0.00 3.85
2139 2313 3.259876 ACTTTATGTACCGTCCTTGAGCA 59.740 43.478 0.00 0.00 0.00 4.26
2140 2314 3.965379 TTATGTACCGTCCTTGAGCAA 57.035 42.857 0.00 0.00 0.00 3.91
2151 2325 3.627577 GTCCTTGAGCAAAAGACAAGTGA 59.372 43.478 0.00 0.00 39.19 3.41
2180 2355 8.547967 TCCTCAAACTCTGTATTGTGTATTTC 57.452 34.615 0.00 0.00 0.00 2.17
2198 2373 9.813080 GTGTATTTCTGTTGTCAGTCTTATTTC 57.187 33.333 0.00 0.00 41.91 2.17
2199 2374 8.999431 TGTATTTCTGTTGTCAGTCTTATTTCC 58.001 33.333 0.00 0.00 41.91 3.13
2200 2375 6.539649 TTTCTGTTGTCAGTCTTATTTCCG 57.460 37.500 0.00 0.00 41.91 4.30
2201 2376 5.209818 TCTGTTGTCAGTCTTATTTCCGT 57.790 39.130 0.00 0.00 41.91 4.69
2204 2379 7.211573 TCTGTTGTCAGTCTTATTTCCGTTAA 58.788 34.615 0.00 0.00 41.91 2.01
2205 2380 7.876068 TCTGTTGTCAGTCTTATTTCCGTTAAT 59.124 33.333 0.00 0.00 41.91 1.40
2206 2381 9.146984 CTGTTGTCAGTCTTATTTCCGTTAATA 57.853 33.333 0.00 0.00 36.97 0.98
2207 2382 9.491675 TGTTGTCAGTCTTATTTCCGTTAATAA 57.508 29.630 0.00 0.00 0.00 1.40
2211 2386 9.968743 GTCAGTCTTATTTCCGTTAATAAACTG 57.031 33.333 19.36 19.36 38.46 3.16
2212 2387 8.662141 TCAGTCTTATTTCCGTTAATAAACTGC 58.338 33.333 19.87 0.00 37.94 4.40
2213 2388 8.665685 CAGTCTTATTTCCGTTAATAAACTGCT 58.334 33.333 16.86 7.03 35.47 4.24
2214 2389 8.880750 AGTCTTATTTCCGTTAATAAACTGCTC 58.119 33.333 0.00 0.00 31.53 4.26
2215 2390 8.662141 GTCTTATTTCCGTTAATAAACTGCTCA 58.338 33.333 0.00 0.00 31.53 4.26
2216 2391 9.221933 TCTTATTTCCGTTAATAAACTGCTCAA 57.778 29.630 0.00 0.00 31.53 3.02
2245 2425 8.686334 ACCTGTATATTTGCTTTTCTGTAATGG 58.314 33.333 0.00 0.00 0.00 3.16
2253 2433 5.830912 TGCTTTTCTGTAATGGAAGTGTTG 58.169 37.500 0.00 0.00 0.00 3.33
2263 2443 5.841957 AATGGAAGTGTTGAATGATAGCC 57.158 39.130 0.00 0.00 0.00 3.93
2265 2445 3.055458 TGGAAGTGTTGAATGATAGCCGA 60.055 43.478 0.00 0.00 0.00 5.54
2266 2446 3.557595 GGAAGTGTTGAATGATAGCCGAG 59.442 47.826 0.00 0.00 0.00 4.63
2295 2476 3.344904 GCTGCAGGCTATACAATGTTG 57.655 47.619 17.12 0.00 38.06 3.33
2298 2479 2.423185 TGCAGGCTATACAATGTTGCAC 59.577 45.455 4.29 0.00 35.41 4.57
2322 2503 8.019669 CACTCATGCTATGGAAATATACAAAGC 58.980 37.037 0.00 0.00 0.00 3.51
2324 2505 9.440773 CTCATGCTATGGAAATATACAAAGCTA 57.559 33.333 0.00 0.00 0.00 3.32
2325 2506 9.219603 TCATGCTATGGAAATATACAAAGCTAC 57.780 33.333 0.00 0.00 0.00 3.58
2326 2507 9.002600 CATGCTATGGAAATATACAAAGCTACA 57.997 33.333 0.00 0.00 0.00 2.74
2327 2508 8.972458 TGCTATGGAAATATACAAAGCTACAA 57.028 30.769 0.00 0.00 0.00 2.41
2359 2551 6.640518 TGTATCCCAGAGCTTAGTAAAGTTG 58.359 40.000 0.00 0.00 34.99 3.16
2401 2675 2.162809 TCACGCTGACTACGCTAATGAA 59.837 45.455 0.00 0.00 0.00 2.57
2403 2677 3.366724 CACGCTGACTACGCTAATGAAAA 59.633 43.478 0.00 0.00 0.00 2.29
2409 2683 5.666462 TGACTACGCTAATGAAAAGCCATA 58.334 37.500 0.00 0.00 36.60 2.74
2411 2685 6.423905 TGACTACGCTAATGAAAAGCCATATC 59.576 38.462 0.00 0.00 36.60 1.63
2467 2741 7.817418 AAACAGTAACAGGAAACATGTATGT 57.183 32.000 0.00 0.00 44.20 2.29
2468 2742 6.801539 ACAGTAACAGGAAACATGTATGTG 57.198 37.500 0.00 0.00 41.61 3.21
2477 2751 7.394359 ACAGGAAACATGTATGTGCTAGAAAAT 59.606 33.333 0.00 0.00 41.61 1.82
2484 2758 8.432013 ACATGTATGTGCTAGAAAATATCTCCA 58.568 33.333 0.00 0.00 40.03 3.86
2487 2761 9.494271 TGTATGTGCTAGAAAATATCTCCAATC 57.506 33.333 0.00 0.00 39.71 2.67
2488 2762 7.992754 ATGTGCTAGAAAATATCTCCAATCC 57.007 36.000 0.00 0.00 39.71 3.01
2489 2763 6.899089 TGTGCTAGAAAATATCTCCAATCCA 58.101 36.000 0.00 0.00 39.71 3.41
2490 2764 6.767902 TGTGCTAGAAAATATCTCCAATCCAC 59.232 38.462 0.00 0.00 39.71 4.02
2491 2765 5.991606 TGCTAGAAAATATCTCCAATCCACG 59.008 40.000 0.00 0.00 39.71 4.94
2492 2766 6.183360 TGCTAGAAAATATCTCCAATCCACGA 60.183 38.462 0.00 0.00 39.71 4.35
2493 2767 6.367422 GCTAGAAAATATCTCCAATCCACGAG 59.633 42.308 0.00 0.00 39.71 4.18
2494 2768 6.485830 AGAAAATATCTCCAATCCACGAGA 57.514 37.500 0.00 0.00 39.38 4.04
2497 2771 1.866015 ATCTCCAATCCACGAGACCA 58.134 50.000 0.00 0.00 37.94 4.02
2500 2774 1.447838 CCAATCCACGAGACCACGG 60.448 63.158 0.00 0.00 37.61 4.94
2503 2777 2.507110 AATCCACGAGACCACGGCTG 62.507 60.000 0.00 0.00 37.61 4.85
2519 2793 3.002791 CGGCTGATTAGTTCAAGAGCAA 58.997 45.455 0.00 0.00 32.78 3.91
2533 2807 4.879545 TCAAGAGCAAAAACTACTCGGTTT 59.120 37.500 0.00 0.00 40.59 3.27
2549 2825 0.881796 GTTTGAGGGGGAAAGAAGCG 59.118 55.000 0.00 0.00 0.00 4.68
2581 2857 7.164122 ACTCATGAGCTAACTGAATCTGAAAA 58.836 34.615 22.83 0.00 0.00 2.29
2589 2865 4.410492 ACTGAATCTGAAAACGCATGAC 57.590 40.909 0.00 0.00 0.00 3.06
2623 2899 5.555017 GGAACATATCTGTGTGCCTATGAT 58.445 41.667 0.00 0.00 43.43 2.45
2647 2923 6.161855 AGAGAATCATGGTTAACAGCGATA 57.838 37.500 8.10 0.00 37.82 2.92
2679 2955 9.520515 ACAAATCCTACACTGATAGAAAAACAT 57.479 29.630 0.00 0.00 0.00 2.71
2721 3000 8.410673 TTTAACAAACTACCATTAAGGCATCA 57.589 30.769 0.00 0.00 43.14 3.07
2743 3022 5.928264 TCAAATGCATAGATACCACATCGAG 59.072 40.000 0.00 0.00 0.00 4.04
2745 3024 5.728637 ATGCATAGATACCACATCGAGAA 57.271 39.130 0.00 0.00 0.00 2.87
2765 3057 5.209659 AGAACTATGGTCTTGGGTAGGTAG 58.790 45.833 0.00 0.00 0.00 3.18
2781 3073 6.415573 GGTAGGTAGAACTGAAATTGACCAT 58.584 40.000 0.00 0.00 0.00 3.55
2798 3090 9.479549 AATTGACCATTGGATAATTGTTAGACT 57.520 29.630 10.37 0.00 0.00 3.24
2800 3092 9.967451 TTGACCATTGGATAATTGTTAGACTTA 57.033 29.630 10.37 0.00 0.00 2.24
2808 3100 9.667107 TGGATAATTGTTAGACTTAAACTCCAG 57.333 33.333 0.00 0.00 28.58 3.86
2809 3101 9.668497 GGATAATTGTTAGACTTAAACTCCAGT 57.332 33.333 0.00 0.00 0.00 4.00
2820 3112 8.541234 AGACTTAAACTCCAGTTAAGATTAGGG 58.459 37.037 10.13 0.00 37.25 3.53
2821 3113 7.110810 ACTTAAACTCCAGTTAAGATTAGGGC 58.889 38.462 10.13 0.00 37.25 5.19
2822 3114 5.514500 AAACTCCAGTTAAGATTAGGGCA 57.486 39.130 0.00 0.00 37.25 5.36
2823 3115 4.762289 ACTCCAGTTAAGATTAGGGCAG 57.238 45.455 0.00 0.00 0.00 4.85
2824 3116 3.118223 ACTCCAGTTAAGATTAGGGCAGC 60.118 47.826 0.00 0.00 0.00 5.25
2825 3117 2.172717 TCCAGTTAAGATTAGGGCAGCC 59.827 50.000 1.26 1.26 0.00 4.85
2826 3118 2.576615 CAGTTAAGATTAGGGCAGCCC 58.423 52.381 24.90 24.90 45.90 5.19
2836 3128 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2837 3129 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2838 3130 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2839 3131 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2840 3132 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2846 3138 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2847 3139 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2848 3140 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2849 3141 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2852 3144 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2868 3160 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2875 3167 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2876 3168 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2877 3169 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2878 3170 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2879 3171 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2880 3172 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2881 3173 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2882 3174 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2892 3184 2.946990 ACCACTTTGGGTCTTTTGTACG 59.053 45.455 0.00 0.00 43.37 3.67
2893 3185 2.287368 CCACTTTGGGTCTTTTGTACGC 60.287 50.000 0.00 0.00 32.67 4.42
2894 3186 2.356382 CACTTTGGGTCTTTTGTACGCA 59.644 45.455 0.00 0.00 37.94 5.24
2895 3187 2.616842 ACTTTGGGTCTTTTGTACGCAG 59.383 45.455 0.00 0.00 40.36 5.18
2896 3188 0.948678 TTGGGTCTTTTGTACGCAGC 59.051 50.000 0.00 0.00 40.36 5.25
2897 3189 0.887387 TGGGTCTTTTGTACGCAGCC 60.887 55.000 0.00 0.00 35.18 4.85
2898 3190 0.605589 GGGTCTTTTGTACGCAGCCT 60.606 55.000 0.00 0.00 0.00 4.58
2899 3191 1.235724 GGTCTTTTGTACGCAGCCTT 58.764 50.000 0.00 0.00 0.00 4.35
2900 3192 1.607148 GGTCTTTTGTACGCAGCCTTT 59.393 47.619 0.00 0.00 0.00 3.11
2901 3193 2.350484 GGTCTTTTGTACGCAGCCTTTC 60.350 50.000 0.00 0.00 0.00 2.62
2902 3194 1.877443 TCTTTTGTACGCAGCCTTTCC 59.123 47.619 0.00 0.00 0.00 3.13
2903 3195 0.955905 TTTTGTACGCAGCCTTTCCC 59.044 50.000 0.00 0.00 0.00 3.97
2904 3196 0.109723 TTTGTACGCAGCCTTTCCCT 59.890 50.000 0.00 0.00 0.00 4.20
2905 3197 0.605319 TTGTACGCAGCCTTTCCCTG 60.605 55.000 0.00 0.00 0.00 4.45
2912 3204 1.553706 CAGCCTTTCCCTGCATTTCT 58.446 50.000 0.00 0.00 0.00 2.52
2913 3205 1.203994 CAGCCTTTCCCTGCATTTCTG 59.796 52.381 0.00 0.00 0.00 3.02
2928 3220 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
2929 3221 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
2930 3222 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
2931 3223 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
2932 3224 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
2933 3225 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
2934 3226 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
2935 3227 0.980423 AGAGGCTGTTTCCAGGACTC 59.020 55.000 0.00 0.00 39.22 3.36
2936 3228 0.390472 GAGGCTGTTTCCAGGACTCG 60.390 60.000 0.00 0.00 39.22 4.18
2937 3229 0.832135 AGGCTGTTTCCAGGACTCGA 60.832 55.000 0.00 0.00 39.22 4.04
2938 3230 0.034896 GGCTGTTTCCAGGACTCGAA 59.965 55.000 0.00 0.00 39.22 3.71
2939 3231 1.149148 GCTGTTTCCAGGACTCGAAC 58.851 55.000 0.00 0.00 39.22 3.95
2940 3232 1.797025 CTGTTTCCAGGACTCGAACC 58.203 55.000 0.00 0.64 34.90 3.62
2941 3233 0.395312 TGTTTCCAGGACTCGAACCC 59.605 55.000 0.00 0.12 0.00 4.11
2942 3234 0.669625 GTTTCCAGGACTCGAACCCG 60.670 60.000 0.00 0.00 37.07 5.28
2943 3235 1.117142 TTTCCAGGACTCGAACCCGT 61.117 55.000 0.00 0.00 37.05 5.28
2944 3236 1.812686 TTCCAGGACTCGAACCCGTG 61.813 60.000 0.00 0.64 37.05 4.94
2945 3237 2.273179 CCAGGACTCGAACCCGTGA 61.273 63.158 4.92 0.00 37.05 4.35
2946 3238 1.080705 CAGGACTCGAACCCGTGAC 60.081 63.158 4.92 0.00 37.05 3.67
2947 3239 2.260743 GGACTCGAACCCGTGACC 59.739 66.667 0.00 0.00 37.08 4.02
2948 3240 2.273912 GGACTCGAACCCGTGACCT 61.274 63.158 0.00 0.00 39.62 3.85
2949 3241 1.212229 GACTCGAACCCGTGACCTC 59.788 63.158 0.00 0.00 37.05 3.85
2950 3242 1.521450 GACTCGAACCCGTGACCTCA 61.521 60.000 0.00 0.00 37.05 3.86
2951 3243 0.898789 ACTCGAACCCGTGACCTCAT 60.899 55.000 0.00 0.00 37.05 2.90
2952 3244 0.458543 CTCGAACCCGTGACCTCATG 60.459 60.000 0.00 0.00 37.05 3.07
2963 3255 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2964 3256 0.478072 ACCTCATGGTCACAAGGCAA 59.522 50.000 0.00 0.00 44.78 4.52
2965 3257 0.883833 CCTCATGGTCACAAGGCAAC 59.116 55.000 0.00 0.00 0.00 4.17
2966 3258 1.608055 CTCATGGTCACAAGGCAACA 58.392 50.000 0.00 0.00 41.41 3.33
2967 3259 1.538512 CTCATGGTCACAAGGCAACAG 59.461 52.381 0.00 0.00 41.41 3.16
2968 3260 0.038892 CATGGTCACAAGGCAACAGC 60.039 55.000 0.00 0.00 41.41 4.40
2969 3261 0.178981 ATGGTCACAAGGCAACAGCT 60.179 50.000 0.00 0.00 41.41 4.24
2970 3262 0.395586 TGGTCACAAGGCAACAGCTT 60.396 50.000 0.00 0.00 41.41 3.74
2971 3263 0.746659 GGTCACAAGGCAACAGCTTT 59.253 50.000 0.00 0.00 41.41 3.51
2972 3264 1.953686 GGTCACAAGGCAACAGCTTTA 59.046 47.619 0.00 0.00 41.41 1.85
2973 3265 2.287608 GGTCACAAGGCAACAGCTTTAC 60.288 50.000 0.00 0.00 41.41 2.01
2974 3266 1.953686 TCACAAGGCAACAGCTTTACC 59.046 47.619 0.00 0.00 41.41 2.85
2975 3267 1.680735 CACAAGGCAACAGCTTTACCA 59.319 47.619 0.00 0.00 41.41 3.25
2976 3268 1.681264 ACAAGGCAACAGCTTTACCAC 59.319 47.619 0.00 0.00 41.41 4.16
2977 3269 1.956477 CAAGGCAACAGCTTTACCACT 59.044 47.619 0.00 0.00 41.41 4.00
2978 3270 1.897560 AGGCAACAGCTTTACCACTC 58.102 50.000 0.00 0.00 41.41 3.51
2979 3271 0.517316 GGCAACAGCTTTACCACTCG 59.483 55.000 0.00 0.00 0.00 4.18
2980 3272 0.517316 GCAACAGCTTTACCACTCGG 59.483 55.000 0.00 0.00 38.77 4.63
3001 3293 7.231115 ACTCGGGTTAAAATTAAACTGGCTTAA 59.769 33.333 9.32 0.00 37.33 1.85
3003 3295 8.245491 TCGGGTTAAAATTAAACTGGCTTAATC 58.755 33.333 9.32 0.00 37.33 1.75
3026 3326 9.607333 AATCATTCTCTTATACTGGACATCCTA 57.393 33.333 0.00 0.00 36.82 2.94
3034 3334 9.607333 TCTTATACTGGACATCCTAGATTTCAT 57.393 33.333 0.00 0.00 36.82 2.57
3077 3378 8.944029 GCTGCATTTGAGTCATATATAACAGAT 58.056 33.333 13.95 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.198650 TCATGTGATTGACTAAAGCCAATG 57.801 37.500 0.00 0.00 33.57 2.82
18 19 0.842030 AGGGGTTGAGGCTCATGTGA 60.842 55.000 19.50 0.00 0.00 3.58
88 91 3.207778 CCGCCGATCAATAACCCTAAAA 58.792 45.455 0.00 0.00 0.00 1.52
92 95 0.106149 GACCGCCGATCAATAACCCT 59.894 55.000 0.00 0.00 0.00 4.34
93 96 0.106149 AGACCGCCGATCAATAACCC 59.894 55.000 0.00 0.00 0.00 4.11
97 100 4.142116 TGTTTCTAAGACCGCCGATCAATA 60.142 41.667 0.00 0.00 0.00 1.90
106 109 1.461127 CTGCTGTGTTTCTAAGACCGC 59.539 52.381 0.00 0.00 35.85 5.68
115 118 2.680339 GGGCTAGAATCTGCTGTGTTTC 59.320 50.000 0.00 0.00 0.00 2.78
117 120 1.065126 GGGGCTAGAATCTGCTGTGTT 60.065 52.381 0.00 0.00 0.00 3.32
129 132 2.123428 GTCGTTAGGCGGGGCTAGA 61.123 63.158 0.00 0.00 41.72 2.43
134 137 3.476419 ATGGGTCGTTAGGCGGGG 61.476 66.667 0.00 0.00 41.72 5.73
135 138 2.203015 CATGGGTCGTTAGGCGGG 60.203 66.667 0.00 0.00 41.72 6.13
136 139 1.520787 GACATGGGTCGTTAGGCGG 60.521 63.158 0.00 0.00 41.72 6.13
137 140 4.104143 GACATGGGTCGTTAGGCG 57.896 61.111 0.00 0.00 43.01 5.52
145 148 2.887152 AGAAAGCAAGTTGACATGGGTC 59.113 45.455 7.16 0.00 44.57 4.46
146 149 2.624838 CAGAAAGCAAGTTGACATGGGT 59.375 45.455 7.16 0.00 0.00 4.51
147 150 2.624838 ACAGAAAGCAAGTTGACATGGG 59.375 45.455 7.16 0.00 0.00 4.00
148 151 3.551454 CCACAGAAAGCAAGTTGACATGG 60.551 47.826 7.16 0.11 0.00 3.66
149 152 3.551454 CCCACAGAAAGCAAGTTGACATG 60.551 47.826 7.16 0.00 0.00 3.21
150 153 2.624838 CCCACAGAAAGCAAGTTGACAT 59.375 45.455 7.16 0.00 0.00 3.06
151 154 2.023673 CCCACAGAAAGCAAGTTGACA 58.976 47.619 7.16 0.00 0.00 3.58
152 155 2.024414 ACCCACAGAAAGCAAGTTGAC 58.976 47.619 7.16 0.00 0.00 3.18
153 156 2.435372 ACCCACAGAAAGCAAGTTGA 57.565 45.000 7.16 0.00 0.00 3.18
154 157 2.948979 TGTACCCACAGAAAGCAAGTTG 59.051 45.455 0.00 0.00 0.00 3.16
155 158 3.290948 TGTACCCACAGAAAGCAAGTT 57.709 42.857 0.00 0.00 0.00 2.66
156 159 3.290948 TTGTACCCACAGAAAGCAAGT 57.709 42.857 0.00 0.00 35.67 3.16
157 160 4.499696 CCTTTTGTACCCACAGAAAGCAAG 60.500 45.833 0.00 0.00 35.67 4.01
158 161 3.383185 CCTTTTGTACCCACAGAAAGCAA 59.617 43.478 0.00 0.00 35.67 3.91
159 162 2.955660 CCTTTTGTACCCACAGAAAGCA 59.044 45.455 0.00 0.00 35.67 3.91
160 163 2.956333 ACCTTTTGTACCCACAGAAAGC 59.044 45.455 0.00 0.00 35.67 3.51
161 164 6.095720 TGTTAACCTTTTGTACCCACAGAAAG 59.904 38.462 2.48 0.00 35.67 2.62
162 165 5.950549 TGTTAACCTTTTGTACCCACAGAAA 59.049 36.000 2.48 0.00 35.67 2.52
163 166 5.507637 TGTTAACCTTTTGTACCCACAGAA 58.492 37.500 2.48 0.00 35.67 3.02
164 167 5.113446 TGTTAACCTTTTGTACCCACAGA 57.887 39.130 2.48 0.00 35.67 3.41
165 168 5.838531 TTGTTAACCTTTTGTACCCACAG 57.161 39.130 2.48 0.00 35.67 3.66
166 169 6.210984 AGTTTTGTTAACCTTTTGTACCCACA 59.789 34.615 2.48 0.00 0.00 4.17
167 170 6.632909 AGTTTTGTTAACCTTTTGTACCCAC 58.367 36.000 2.48 0.00 0.00 4.61
168 171 6.854091 AGTTTTGTTAACCTTTTGTACCCA 57.146 33.333 2.48 0.00 0.00 4.51
169 172 9.304731 CTTTAGTTTTGTTAACCTTTTGTACCC 57.695 33.333 2.48 0.00 0.00 3.69
207 210 8.140112 AGTTGCCCCACTAATAGATTAGATAG 57.860 38.462 14.75 5.59 41.72 2.08
208 211 8.375506 CAAGTTGCCCCACTAATAGATTAGATA 58.624 37.037 14.75 0.00 41.72 1.98
209 212 7.147302 ACAAGTTGCCCCACTAATAGATTAGAT 60.147 37.037 14.75 0.00 41.72 1.98
211 214 6.357367 ACAAGTTGCCCCACTAATAGATTAG 58.643 40.000 1.81 7.59 44.07 1.73
212 215 6.321821 ACAAGTTGCCCCACTAATAGATTA 57.678 37.500 1.81 0.00 0.00 1.75
215 218 5.493809 GTTACAAGTTGCCCCACTAATAGA 58.506 41.667 1.81 0.00 0.00 1.98
217 220 4.020396 TCGTTACAAGTTGCCCCACTAATA 60.020 41.667 1.81 0.00 0.00 0.98
218 221 3.078837 CGTTACAAGTTGCCCCACTAAT 58.921 45.455 1.81 0.00 0.00 1.73
219 222 2.104451 TCGTTACAAGTTGCCCCACTAA 59.896 45.455 1.81 0.00 0.00 2.24
220 223 1.693062 TCGTTACAAGTTGCCCCACTA 59.307 47.619 1.81 0.00 0.00 2.74
221 224 0.470766 TCGTTACAAGTTGCCCCACT 59.529 50.000 1.81 0.00 0.00 4.00
222 225 0.872388 CTCGTTACAAGTTGCCCCAC 59.128 55.000 1.81 0.00 0.00 4.61
223 226 0.759959 TCTCGTTACAAGTTGCCCCA 59.240 50.000 1.81 0.00 0.00 4.96
224 227 1.439679 CTCTCGTTACAAGTTGCCCC 58.560 55.000 1.81 0.00 0.00 5.80
225 228 1.439679 CCTCTCGTTACAAGTTGCCC 58.560 55.000 1.81 0.00 0.00 5.36
226 229 0.796927 GCCTCTCGTTACAAGTTGCC 59.203 55.000 1.81 0.00 0.00 4.52
227 230 1.461127 CTGCCTCTCGTTACAAGTTGC 59.539 52.381 1.81 0.00 0.00 4.17
228 231 1.461127 GCTGCCTCTCGTTACAAGTTG 59.539 52.381 0.00 0.00 0.00 3.16
230 233 0.679505 TGCTGCCTCTCGTTACAAGT 59.320 50.000 0.00 0.00 0.00 3.16
231 234 2.015736 ATGCTGCCTCTCGTTACAAG 57.984 50.000 0.00 0.00 0.00 3.16
232 235 2.289382 TGAATGCTGCCTCTCGTTACAA 60.289 45.455 0.00 0.00 0.00 2.41
233 236 1.275010 TGAATGCTGCCTCTCGTTACA 59.725 47.619 0.00 0.00 0.00 2.41
234 237 1.929836 CTGAATGCTGCCTCTCGTTAC 59.070 52.381 0.00 0.00 0.00 2.50
236 239 1.023513 GCTGAATGCTGCCTCTCGTT 61.024 55.000 0.00 0.00 38.95 3.85
237 240 1.449246 GCTGAATGCTGCCTCTCGT 60.449 57.895 0.00 0.00 38.95 4.18
248 268 4.712476 AGCTCCTAATGGTTAGCTGAATG 58.288 43.478 0.00 0.00 40.64 2.67
267 287 5.954150 ACAAGATGATGTTTAATTCCCAGCT 59.046 36.000 0.00 0.00 0.00 4.24
274 294 9.699410 TCTGGGAATACAAGATGATGTTTAATT 57.301 29.630 0.00 0.00 34.75 1.40
318 339 1.063912 TGCACTTGTCAGTTTTCTGCG 59.936 47.619 0.00 0.00 46.59 5.18
319 472 2.098117 ACTGCACTTGTCAGTTTTCTGC 59.902 45.455 0.00 0.00 46.59 4.26
342 495 5.284660 GCTAGATCGTGTTTGCAATTTTCTG 59.715 40.000 0.00 0.00 0.00 3.02
443 597 3.603532 CTGTATGCAGAGTCAACCACAT 58.396 45.455 4.57 0.00 45.28 3.21
565 719 5.084818 TGAATCGTGGTGATGATGTTACT 57.915 39.130 0.00 0.00 37.39 2.24
663 817 4.447138 TCACCCATCCTGTTTTACTTGT 57.553 40.909 0.00 0.00 0.00 3.16
682 836 4.019771 TGAACTACACATGGTGCCTATTCA 60.020 41.667 0.00 0.14 36.98 2.57
702 856 5.814481 TCATCATGGTGGTTGACTTATGAA 58.186 37.500 6.03 0.00 34.24 2.57
772 926 5.571784 ACATTTCACTATTGCCATGTGAG 57.428 39.130 0.00 0.00 41.01 3.51
810 981 3.818210 TGCTTCCACACGACACATATTTT 59.182 39.130 0.00 0.00 0.00 1.82
812 983 3.052455 TGCTTCCACACGACACATATT 57.948 42.857 0.00 0.00 0.00 1.28
815 986 1.229428 CTTGCTTCCACACGACACAT 58.771 50.000 0.00 0.00 0.00 3.21
818 989 0.463654 AAGCTTGCTTCCACACGACA 60.464 50.000 0.00 0.00 0.00 4.35
819 990 0.663153 AAAGCTTGCTTCCACACGAC 59.337 50.000 8.39 0.00 0.00 4.34
822 993 3.181487 TGAAAGAAAGCTTGCTTCCACAC 60.181 43.478 20.28 9.91 33.79 3.82
825 996 4.942761 AATGAAAGAAAGCTTGCTTCCA 57.057 36.364 20.28 14.78 33.79 3.53
827 998 6.833342 TGAAAATGAAAGAAAGCTTGCTTC 57.167 33.333 20.28 13.53 33.79 3.86
854 1025 5.351948 TCCGGATTTCAGAACATGATGTA 57.648 39.130 0.00 0.00 37.89 2.29
881 1052 7.284919 TGAGACACGAATGCTAGGAAATATA 57.715 36.000 0.00 0.00 0.00 0.86
882 1053 6.161855 TGAGACACGAATGCTAGGAAATAT 57.838 37.500 0.00 0.00 0.00 1.28
890 1061 0.894835 TGGCTGAGACACGAATGCTA 59.105 50.000 0.00 0.00 0.00 3.49
1032 1203 1.068281 TCTGATCTCTTCTCGCCATGC 59.932 52.381 0.00 0.00 0.00 4.06
1060 1231 1.525535 AGGCATCATGGAGAAGCGC 60.526 57.895 0.00 0.00 41.73 5.92
1140 1311 5.578727 CAGTGAGAAGGTAGAGTGTAAATGC 59.421 44.000 0.00 0.00 0.00 3.56
1243 1415 6.714810 TGCTCATAGTGTTTATTCACCAGTTT 59.285 34.615 0.00 0.00 38.91 2.66
1320 1492 4.035091 TCAACATTTGAGGTGACTTTGTCG 59.965 41.667 0.00 0.00 44.43 4.35
1350 1522 3.819337 GGTGATGATACATGAAGCTGCAT 59.181 43.478 0.00 0.00 0.00 3.96
1371 1543 5.121142 GTCATGAATGTTTGATTTTGGCTGG 59.879 40.000 0.00 0.00 0.00 4.85
1443 1615 0.447801 GTGAACTGTGGCTTATGGCG 59.552 55.000 0.00 0.00 42.94 5.69
1444 1616 0.811281 GGTGAACTGTGGCTTATGGC 59.189 55.000 0.00 0.00 40.90 4.40
1463 1637 6.260936 CACTAATTTCCTGTTATACTGGGCAG 59.739 42.308 3.37 0.00 37.74 4.85
1473 1647 7.558444 ACTTCACAAACCACTAATTTCCTGTTA 59.442 33.333 0.00 0.00 0.00 2.41
1475 1649 5.891551 ACTTCACAAACCACTAATTTCCTGT 59.108 36.000 0.00 0.00 0.00 4.00
1487 1661 5.968528 ACACTTACAAACTTCACAAACCA 57.031 34.783 0.00 0.00 0.00 3.67
1729 1903 1.349026 AGTATGATTCCCCCAGCATCG 59.651 52.381 0.00 0.00 0.00 3.84
1963 2137 4.224818 GGAGCTGGGAAGATTATAGCATCT 59.775 45.833 0.00 0.00 36.87 2.90
2041 2215 4.141574 ACCTTGTCTGTAAACTTGGTAGCA 60.142 41.667 0.00 0.00 0.00 3.49
2053 2227 4.841813 TGGAACCTTGATACCTTGTCTGTA 59.158 41.667 0.00 0.00 0.00 2.74
2083 2257 7.820648 ACACAAGTCATTTGAATACCATCTTC 58.179 34.615 0.00 0.00 39.21 2.87
2106 2280 4.214545 CGGTACATAAAGTGGCTTTTGACA 59.785 41.667 0.00 0.00 35.21 3.58
2130 2304 3.884895 TCACTTGTCTTTTGCTCAAGGA 58.115 40.909 8.59 1.80 41.64 3.36
2132 2306 5.644644 AGTTTCACTTGTCTTTTGCTCAAG 58.355 37.500 0.00 0.00 42.60 3.02
2133 2307 5.393027 GGAGTTTCACTTGTCTTTTGCTCAA 60.393 40.000 0.00 0.00 0.00 3.02
2139 2313 6.434340 AGTTTGAGGAGTTTCACTTGTCTTTT 59.566 34.615 0.00 0.00 0.00 2.27
2140 2314 5.946377 AGTTTGAGGAGTTTCACTTGTCTTT 59.054 36.000 0.00 0.00 0.00 2.52
2151 2325 6.357367 ACACAATACAGAGTTTGAGGAGTTT 58.643 36.000 0.00 0.00 0.00 2.66
2159 2333 9.385902 CAACAGAAATACACAATACAGAGTTTG 57.614 33.333 0.00 0.00 0.00 2.93
2165 2340 8.087982 ACTGACAACAGAAATACACAATACAG 57.912 34.615 0.00 0.00 46.03 2.74
2198 2373 7.148306 ACAGGTAATTGAGCAGTTTATTAACGG 60.148 37.037 0.00 0.00 39.31 4.44
2199 2374 7.748847 ACAGGTAATTGAGCAGTTTATTAACG 58.251 34.615 0.00 0.00 39.31 3.18
2206 2381 8.190784 GCAAATATACAGGTAATTGAGCAGTTT 58.809 33.333 0.00 0.00 0.00 2.66
2207 2382 7.557719 AGCAAATATACAGGTAATTGAGCAGTT 59.442 33.333 0.00 0.00 0.00 3.16
2209 2384 7.502120 AGCAAATATACAGGTAATTGAGCAG 57.498 36.000 0.00 0.00 0.00 4.24
2211 2386 9.237846 GAAAAGCAAATATACAGGTAATTGAGC 57.762 33.333 0.00 0.00 0.00 4.26
2243 2423 3.055458 TCGGCTATCATTCAACACTTCCA 60.055 43.478 0.00 0.00 0.00 3.53
2244 2424 3.531538 TCGGCTATCATTCAACACTTCC 58.468 45.455 0.00 0.00 0.00 3.46
2245 2425 4.433615 TCTCGGCTATCATTCAACACTTC 58.566 43.478 0.00 0.00 0.00 3.01
2253 2433 6.090628 CAGCTATTCTTTCTCGGCTATCATTC 59.909 42.308 0.00 0.00 0.00 2.67
2263 2443 1.596727 GCCTGCAGCTATTCTTTCTCG 59.403 52.381 8.66 0.00 38.99 4.04
2298 2479 8.332996 AGCTTTGTATATTTCCATAGCATGAG 57.667 34.615 0.00 0.00 37.88 2.90
2317 2498 7.498900 TGGGATACATTGTCTATTGTAGCTTTG 59.501 37.037 0.00 0.00 35.58 2.77
2318 2499 7.573710 TGGGATACATTGTCTATTGTAGCTTT 58.426 34.615 0.00 0.00 35.58 3.51
2321 2502 6.759272 TCTGGGATACATTGTCTATTGTAGC 58.241 40.000 0.00 0.00 34.75 3.58
2322 2503 6.870965 GCTCTGGGATACATTGTCTATTGTAG 59.129 42.308 0.00 0.00 39.74 2.74
2324 2505 5.367937 AGCTCTGGGATACATTGTCTATTGT 59.632 40.000 0.00 0.00 39.74 2.71
2325 2506 5.862845 AGCTCTGGGATACATTGTCTATTG 58.137 41.667 0.00 0.00 39.74 1.90
2326 2507 6.506538 AAGCTCTGGGATACATTGTCTATT 57.493 37.500 0.00 0.00 39.74 1.73
2327 2508 6.784969 ACTAAGCTCTGGGATACATTGTCTAT 59.215 38.462 0.00 0.00 39.74 1.98
2329 2510 4.965532 ACTAAGCTCTGGGATACATTGTCT 59.034 41.667 0.00 0.00 39.74 3.41
2330 2511 5.283457 ACTAAGCTCTGGGATACATTGTC 57.717 43.478 0.00 0.00 39.74 3.18
2331 2512 6.808321 TTACTAAGCTCTGGGATACATTGT 57.192 37.500 0.00 0.00 39.74 2.71
2332 2513 7.275920 ACTTTACTAAGCTCTGGGATACATTG 58.724 38.462 0.00 0.00 34.60 2.82
2336 2520 6.641474 ACAACTTTACTAAGCTCTGGGATAC 58.359 40.000 0.00 0.00 34.60 2.24
2359 2551 4.808364 TGACTGCCAGTTTAAAATGCAAAC 59.192 37.500 10.10 8.74 36.37 2.93
2391 2583 6.449635 TTTGATATGGCTTTTCATTAGCGT 57.550 33.333 0.00 0.00 39.54 5.07
2429 2703 8.132362 CCTGTTACTGTTTTGTTGCTATACAAA 58.868 33.333 7.84 7.84 44.01 2.83
2434 2708 6.952773 TTCCTGTTACTGTTTTGTTGCTAT 57.047 33.333 0.00 0.00 0.00 2.97
2442 2716 8.134895 CACATACATGTTTCCTGTTACTGTTTT 58.865 33.333 2.30 0.00 39.39 2.43
2467 2741 5.991606 CGTGGATTGGAGATATTTTCTAGCA 59.008 40.000 0.00 0.00 33.74 3.49
2468 2742 6.223852 TCGTGGATTGGAGATATTTTCTAGC 58.776 40.000 0.00 0.00 33.74 3.42
2477 2751 2.693591 GTGGTCTCGTGGATTGGAGATA 59.306 50.000 0.00 0.00 41.04 1.98
2484 2758 2.264794 GCCGTGGTCTCGTGGATT 59.735 61.111 0.00 0.00 0.00 3.01
2487 2761 2.507110 AATCAGCCGTGGTCTCGTGG 62.507 60.000 0.00 0.00 0.00 4.94
2488 2762 0.172578 TAATCAGCCGTGGTCTCGTG 59.827 55.000 0.00 0.00 0.00 4.35
2489 2763 0.456221 CTAATCAGCCGTGGTCTCGT 59.544 55.000 0.00 0.00 0.00 4.18
2490 2764 0.456221 ACTAATCAGCCGTGGTCTCG 59.544 55.000 0.00 0.00 0.00 4.04
2491 2765 2.094182 TGAACTAATCAGCCGTGGTCTC 60.094 50.000 0.00 0.00 33.04 3.36
2492 2766 1.899814 TGAACTAATCAGCCGTGGTCT 59.100 47.619 0.00 0.00 33.04 3.85
2493 2767 2.380084 TGAACTAATCAGCCGTGGTC 57.620 50.000 0.00 0.00 33.04 4.02
2494 2768 2.301870 TCTTGAACTAATCAGCCGTGGT 59.698 45.455 0.00 0.00 39.77 4.16
2497 2771 2.028112 TGCTCTTGAACTAATCAGCCGT 60.028 45.455 0.00 0.00 39.77 5.68
2500 2774 6.442112 AGTTTTTGCTCTTGAACTAATCAGC 58.558 36.000 0.00 0.00 39.77 4.26
2503 2777 7.952637 CGAGTAGTTTTTGCTCTTGAACTAATC 59.047 37.037 10.69 10.69 42.04 1.75
2519 2793 2.224695 CCCCCTCAAACCGAGTAGTTTT 60.225 50.000 0.00 0.00 40.48 2.43
2533 2807 1.131303 TTCCGCTTCTTTCCCCCTCA 61.131 55.000 0.00 0.00 0.00 3.86
2538 2812 1.278413 AGTAGGTTCCGCTTCTTTCCC 59.722 52.381 0.00 0.00 0.00 3.97
2539 2813 2.028385 TGAGTAGGTTCCGCTTCTTTCC 60.028 50.000 0.00 0.00 0.00 3.13
2540 2814 3.314541 TGAGTAGGTTCCGCTTCTTTC 57.685 47.619 0.00 0.00 0.00 2.62
2549 2825 4.402793 TCAGTTAGCTCATGAGTAGGTTCC 59.597 45.833 23.38 5.42 0.00 3.62
2581 2857 4.722700 GGTGCCCAGGTCATGCGT 62.723 66.667 0.00 0.00 0.00 5.24
2623 2899 5.592104 TCGCTGTTAACCATGATTCTCTA 57.408 39.130 2.48 0.00 0.00 2.43
2721 3000 6.101650 TCTCGATGTGGTATCTATGCATTT 57.898 37.500 3.54 0.00 0.00 2.32
2730 3009 5.241949 AGACCATAGTTCTCGATGTGGTATC 59.758 44.000 5.29 0.00 39.86 2.24
2734 3013 4.115516 CAAGACCATAGTTCTCGATGTGG 58.884 47.826 0.00 0.00 0.00 4.17
2740 3019 3.068307 CCTACCCAAGACCATAGTTCTCG 59.932 52.174 0.00 0.00 0.00 4.04
2743 3022 5.206587 TCTACCTACCCAAGACCATAGTTC 58.793 45.833 0.00 0.00 0.00 3.01
2745 3024 4.894252 TCTACCTACCCAAGACCATAGT 57.106 45.455 0.00 0.00 0.00 2.12
2765 3057 9.090692 CAATTATCCAATGGTCAATTTCAGTTC 57.909 33.333 0.00 0.00 0.00 3.01
2795 3087 7.280428 GCCCTAATCTTAACTGGAGTTTAAGTC 59.720 40.741 0.00 0.00 39.31 3.01
2796 3088 7.110810 GCCCTAATCTTAACTGGAGTTTAAGT 58.889 38.462 0.00 0.00 39.31 2.24
2797 3089 7.110155 TGCCCTAATCTTAACTGGAGTTTAAG 58.890 38.462 0.00 1.09 39.31 1.85
2798 3090 7.023171 TGCCCTAATCTTAACTGGAGTTTAA 57.977 36.000 0.00 0.00 39.31 1.52
2800 3092 5.501156 CTGCCCTAATCTTAACTGGAGTTT 58.499 41.667 0.00 0.00 39.31 2.66
2805 3097 2.576615 GGCTGCCCTAATCTTAACTGG 58.423 52.381 7.66 0.00 0.00 4.00
2808 3100 1.594331 CGGGCTGCCCTAATCTTAAC 58.406 55.000 33.39 5.18 42.67 2.01
2809 3101 0.472471 CCGGGCTGCCCTAATCTTAA 59.528 55.000 33.39 0.00 42.67 1.85
2810 3102 0.693092 ACCGGGCTGCCCTAATCTTA 60.693 55.000 33.39 0.00 42.67 2.10
2811 3103 2.001269 ACCGGGCTGCCCTAATCTT 61.001 57.895 33.39 9.66 42.67 2.40
2812 3104 2.366972 ACCGGGCTGCCCTAATCT 60.367 61.111 33.39 9.64 42.67 2.40
2813 3105 2.203209 CACCGGGCTGCCCTAATC 60.203 66.667 33.39 8.98 42.67 1.75
2814 3106 4.506255 GCACCGGGCTGCCCTAAT 62.506 66.667 33.39 16.93 42.67 1.73
2819 3111 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2820 3112 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2821 3113 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2822 3114 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2823 3115 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2824 3116 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2851 3143 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2858 3150 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2859 3151 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2860 3152 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2861 3153 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2862 3154 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2863 3155 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2864 3156 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2865 3157 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2866 3158 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2871 3163 2.946990 CGTACAAAAGACCCAAAGTGGT 59.053 45.455 0.00 0.00 42.79 4.16
2872 3164 2.287368 GCGTACAAAAGACCCAAAGTGG 60.287 50.000 0.00 0.00 37.25 4.00
2873 3165 2.356382 TGCGTACAAAAGACCCAAAGTG 59.644 45.455 0.00 0.00 0.00 3.16
2874 3166 2.616842 CTGCGTACAAAAGACCCAAAGT 59.383 45.455 0.00 0.00 0.00 2.66
2875 3167 2.604614 GCTGCGTACAAAAGACCCAAAG 60.605 50.000 0.00 0.00 0.00 2.77
2876 3168 1.335496 GCTGCGTACAAAAGACCCAAA 59.665 47.619 0.00 0.00 0.00 3.28
2877 3169 0.948678 GCTGCGTACAAAAGACCCAA 59.051 50.000 0.00 0.00 0.00 4.12
2878 3170 0.887387 GGCTGCGTACAAAAGACCCA 60.887 55.000 0.00 0.00 0.00 4.51
2879 3171 0.605589 AGGCTGCGTACAAAAGACCC 60.606 55.000 0.00 0.00 0.00 4.46
2880 3172 1.235724 AAGGCTGCGTACAAAAGACC 58.764 50.000 0.00 0.00 0.00 3.85
2881 3173 2.350484 GGAAAGGCTGCGTACAAAAGAC 60.350 50.000 0.00 0.00 0.00 3.01
2882 3174 1.877443 GGAAAGGCTGCGTACAAAAGA 59.123 47.619 0.00 0.00 0.00 2.52
2883 3175 1.068541 GGGAAAGGCTGCGTACAAAAG 60.069 52.381 0.00 0.00 0.00 2.27
2884 3176 0.955905 GGGAAAGGCTGCGTACAAAA 59.044 50.000 0.00 0.00 0.00 2.44
2885 3177 0.109723 AGGGAAAGGCTGCGTACAAA 59.890 50.000 0.00 0.00 0.00 2.83
2886 3178 0.605319 CAGGGAAAGGCTGCGTACAA 60.605 55.000 0.00 0.00 0.00 2.41
2887 3179 1.003839 CAGGGAAAGGCTGCGTACA 60.004 57.895 0.00 0.00 0.00 2.90
2888 3180 2.399356 GCAGGGAAAGGCTGCGTAC 61.399 63.158 0.00 0.00 34.32 3.67
2889 3181 2.046314 GCAGGGAAAGGCTGCGTA 60.046 61.111 0.00 0.00 34.32 4.42
2890 3182 3.574074 ATGCAGGGAAAGGCTGCGT 62.574 57.895 0.00 0.00 46.05 5.24
2891 3183 1.880819 AAATGCAGGGAAAGGCTGCG 61.881 55.000 0.00 0.00 46.05 5.18
2892 3184 0.108472 GAAATGCAGGGAAAGGCTGC 60.108 55.000 0.00 0.00 43.67 5.25
2893 3185 1.203994 CAGAAATGCAGGGAAAGGCTG 59.796 52.381 0.00 0.00 0.00 4.85
2894 3186 1.553706 CAGAAATGCAGGGAAAGGCT 58.446 50.000 0.00 0.00 0.00 4.58
2895 3187 0.108472 GCAGAAATGCAGGGAAAGGC 60.108 55.000 0.00 0.00 34.41 4.35
2896 3188 1.259609 TGCAGAAATGCAGGGAAAGG 58.740 50.000 0.00 0.00 40.23 3.11
2897 3189 2.559668 TCTTGCAGAAATGCAGGGAAAG 59.440 45.455 11.70 3.07 46.21 2.62
2898 3190 2.559668 CTCTTGCAGAAATGCAGGGAAA 59.440 45.455 11.70 0.00 46.21 3.13
2899 3191 2.165167 CTCTTGCAGAAATGCAGGGAA 58.835 47.619 11.70 0.00 46.21 3.97
2900 3192 1.615116 CCTCTTGCAGAAATGCAGGGA 60.615 52.381 11.70 9.29 46.21 4.20
2901 3193 0.815734 CCTCTTGCAGAAATGCAGGG 59.184 55.000 11.70 8.10 46.21 4.45
2902 3194 0.172803 GCCTCTTGCAGAAATGCAGG 59.827 55.000 6.04 6.04 46.21 4.85
2903 3195 1.135373 CAGCCTCTTGCAGAAATGCAG 60.135 52.381 2.87 0.00 46.21 4.41
2904 3196 0.885879 CAGCCTCTTGCAGAAATGCA 59.114 50.000 0.00 0.00 44.83 3.96
2905 3197 0.886563 ACAGCCTCTTGCAGAAATGC 59.113 50.000 0.00 0.00 44.83 3.56
2906 3198 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
2907 3199 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
2908 3200 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
2909 3201 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
2910 3202 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
2911 3203 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
2922 3214 0.395312 GGGTTCGAGTCCTGGAAACA 59.605 55.000 8.95 0.00 36.84 2.83
2923 3215 0.669625 CGGGTTCGAGTCCTGGAAAC 60.670 60.000 0.00 0.00 39.00 2.78
2924 3216 1.117142 ACGGGTTCGAGTCCTGGAAA 61.117 55.000 17.72 0.00 40.11 3.13
2925 3217 1.532316 ACGGGTTCGAGTCCTGGAA 60.532 57.895 17.72 0.00 40.11 3.53
2926 3218 2.116772 ACGGGTTCGAGTCCTGGA 59.883 61.111 17.72 0.00 40.11 3.86
2927 3219 2.261671 CACGGGTTCGAGTCCTGG 59.738 66.667 17.72 9.36 40.11 4.45
2928 3220 1.080705 GTCACGGGTTCGAGTCCTG 60.081 63.158 13.65 13.65 40.11 3.86
2929 3221 2.273912 GGTCACGGGTTCGAGTCCT 61.274 63.158 8.28 0.00 40.11 3.85
2930 3222 2.210341 GAGGTCACGGGTTCGAGTCC 62.210 65.000 0.82 0.82 40.11 3.85
2931 3223 1.212229 GAGGTCACGGGTTCGAGTC 59.788 63.158 0.00 0.00 40.11 3.36
2932 3224 0.898789 ATGAGGTCACGGGTTCGAGT 60.899 55.000 0.00 0.00 40.11 4.18
2933 3225 0.458543 CATGAGGTCACGGGTTCGAG 60.459 60.000 0.00 0.00 40.11 4.04
2934 3226 1.589630 CATGAGGTCACGGGTTCGA 59.410 57.895 0.00 0.00 40.11 3.71
2935 3227 1.447838 CCATGAGGTCACGGGTTCG 60.448 63.158 0.00 0.00 43.02 3.95
2936 3228 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2946 3238 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
2947 3239 1.538512 CTGTTGCCTTGTGACCATGAG 59.461 52.381 0.00 0.00 0.00 2.90
2948 3240 1.608055 CTGTTGCCTTGTGACCATGA 58.392 50.000 0.00 0.00 0.00 3.07
2949 3241 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.00 0.00 0.00 3.66
2950 3242 0.178981 AGCTGTTGCCTTGTGACCAT 60.179 50.000 0.00 0.00 40.80 3.55
2951 3243 0.395586 AAGCTGTTGCCTTGTGACCA 60.396 50.000 0.00 0.00 40.80 4.02
2952 3244 0.746659 AAAGCTGTTGCCTTGTGACC 59.253 50.000 0.00 0.00 40.80 4.02
2953 3245 2.287608 GGTAAAGCTGTTGCCTTGTGAC 60.288 50.000 7.98 0.00 40.80 3.67
2954 3246 1.953686 GGTAAAGCTGTTGCCTTGTGA 59.046 47.619 7.98 0.00 40.80 3.58
2955 3247 1.680735 TGGTAAAGCTGTTGCCTTGTG 59.319 47.619 13.72 0.00 40.80 3.33
2956 3248 1.681264 GTGGTAAAGCTGTTGCCTTGT 59.319 47.619 13.72 0.00 40.80 3.16
2957 3249 1.956477 AGTGGTAAAGCTGTTGCCTTG 59.044 47.619 13.72 0.00 40.80 3.61
2958 3250 2.230660 GAGTGGTAAAGCTGTTGCCTT 58.769 47.619 13.72 5.67 40.80 4.35
2959 3251 1.878102 CGAGTGGTAAAGCTGTTGCCT 60.878 52.381 13.72 0.00 40.80 4.75
2960 3252 0.517316 CGAGTGGTAAAGCTGTTGCC 59.483 55.000 8.21 8.21 40.80 4.52
2961 3253 0.517316 CCGAGTGGTAAAGCTGTTGC 59.483 55.000 0.00 0.00 40.05 4.17
2962 3254 1.156736 CCCGAGTGGTAAAGCTGTTG 58.843 55.000 0.00 0.00 0.00 3.33
2963 3255 3.625745 CCCGAGTGGTAAAGCTGTT 57.374 52.632 0.00 0.00 0.00 3.16
2973 3265 5.705902 CCAGTTTAATTTTAACCCGAGTGG 58.294 41.667 0.00 0.00 41.37 4.00
2974 3266 5.048294 AGCCAGTTTAATTTTAACCCGAGTG 60.048 40.000 0.00 0.00 0.00 3.51
2975 3267 5.074804 AGCCAGTTTAATTTTAACCCGAGT 58.925 37.500 0.00 0.00 0.00 4.18
2976 3268 5.638596 AGCCAGTTTAATTTTAACCCGAG 57.361 39.130 0.00 0.00 0.00 4.63
2977 3269 7.521871 TTAAGCCAGTTTAATTTTAACCCGA 57.478 32.000 0.00 0.00 0.00 5.14
2978 3270 8.030106 TGATTAAGCCAGTTTAATTTTAACCCG 58.970 33.333 1.72 0.00 34.31 5.28
2979 3271 9.884636 ATGATTAAGCCAGTTTAATTTTAACCC 57.115 29.630 1.72 0.00 34.31 4.11
3001 3293 9.253832 CTAGGATGTCCAGTATAAGAGAATGAT 57.746 37.037 1.30 0.00 38.89 2.45
3003 3295 8.642935 TCTAGGATGTCCAGTATAAGAGAATG 57.357 38.462 1.30 0.00 38.89 2.67
3007 3299 9.083422 TGAAATCTAGGATGTCCAGTATAAGAG 57.917 37.037 1.30 0.00 38.89 2.85
3008 3300 9.607333 ATGAAATCTAGGATGTCCAGTATAAGA 57.393 33.333 1.30 0.00 38.89 2.10
3026 3326 7.416438 GCAAGATTGGAGATTGTCATGAAATCT 60.416 37.037 22.35 22.35 45.01 2.40
3034 3334 2.751259 GCAGCAAGATTGGAGATTGTCA 59.249 45.455 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.