Multiple sequence alignment - TraesCS7A01G363400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G363400 chr7A 100.000 4139 0 0 1 4139 538153351 538149213 0.000000e+00 7644.0
1 TraesCS7A01G363400 chr7A 99.448 181 1 0 1 181 604403730 604403910 3.080000e-86 329.0
2 TraesCS7A01G363400 chr7A 76.000 150 20 12 2275 2416 714341908 714342049 3.450000e-06 63.9
3 TraesCS7A01G363400 chr7D 93.428 2830 128 25 174 2974 461955447 461958247 0.000000e+00 4143.0
4 TraesCS7A01G363400 chr7B 92.319 2825 148 31 174 2974 484891347 484894126 0.000000e+00 3951.0
5 TraesCS7A01G363400 chr7B 79.270 931 193 0 3206 4136 358343905 358342975 0.000000e+00 651.0
6 TraesCS7A01G363400 chr7B 82.895 76 7 5 2353 2425 715714969 715714897 3.450000e-06 63.9
7 TraesCS7A01G363400 chr4A 88.380 938 103 2 3206 4139 705719147 705718212 0.000000e+00 1123.0
8 TraesCS7A01G363400 chr3D 86.710 933 123 1 3206 4138 291980219 291979288 0.000000e+00 1035.0
9 TraesCS7A01G363400 chr3D 81.407 199 37 0 1488 1686 106737053 106737251 3.310000e-36 163.0
10 TraesCS7A01G363400 chr3D 81.188 202 34 4 1489 1688 107042417 107042616 4.280000e-35 159.0
11 TraesCS7A01G363400 chr3D 80.905 199 38 0 1488 1686 105891837 105892035 1.540000e-34 158.0
12 TraesCS7A01G363400 chr6D 83.761 936 145 6 3206 4138 297693137 297692206 0.000000e+00 880.0
13 TraesCS7A01G363400 chr6D 83.636 935 148 4 3206 4138 298001419 298000488 0.000000e+00 874.0
14 TraesCS7A01G363400 chr3A 83.315 929 150 3 3211 4139 219722336 219723259 0.000000e+00 852.0
15 TraesCS7A01G363400 chr3A 96.133 181 7 0 1 181 606427648 606427828 3.130000e-76 296.0
16 TraesCS7A01G363400 chr1A 83.297 928 151 3 3213 4138 253534399 253533474 0.000000e+00 852.0
17 TraesCS7A01G363400 chr1B 80.301 929 181 2 3211 4138 278926752 278925825 0.000000e+00 701.0
18 TraesCS7A01G363400 chr1B 96.648 179 6 0 1 179 555003345 555003167 8.700000e-77 298.0
19 TraesCS7A01G363400 chr1B 95.628 183 7 1 1 183 502092414 502092233 4.050000e-75 292.0
20 TraesCS7A01G363400 chr1B 96.089 179 7 0 1 179 555055687 555055509 4.050000e-75 292.0
21 TraesCS7A01G363400 chrUn 79.270 931 193 0 3206 4136 323654254 323655184 0.000000e+00 651.0
22 TraesCS7A01G363400 chrUn 81.522 92 9 7 2338 2425 93133079 93132992 7.420000e-08 69.4
23 TraesCS7A01G363400 chr6B 97.207 179 5 0 1 179 21424969 21425147 1.870000e-78 303.0
24 TraesCS7A01G363400 chr2B 96.721 183 5 1 1 183 62589405 62589224 1.870000e-78 303.0
25 TraesCS7A01G363400 chr5B 96.175 183 4 3 1 183 573919595 573919774 3.130000e-76 296.0
26 TraesCS7A01G363400 chr3B 95.628 183 5 3 1 183 134090264 134090085 1.460000e-74 291.0
27 TraesCS7A01G363400 chr3B 79.899 199 38 2 1489 1686 157377375 157377572 1.200000e-30 145.0
28 TraesCS7A01G363400 chr3B 79.602 201 37 4 1488 1686 157660731 157660929 1.550000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G363400 chr7A 538149213 538153351 4138 True 7644 7644 100.000 1 4139 1 chr7A.!!$R1 4138
1 TraesCS7A01G363400 chr7D 461955447 461958247 2800 False 4143 4143 93.428 174 2974 1 chr7D.!!$F1 2800
2 TraesCS7A01G363400 chr7B 484891347 484894126 2779 False 3951 3951 92.319 174 2974 1 chr7B.!!$F1 2800
3 TraesCS7A01G363400 chr7B 358342975 358343905 930 True 651 651 79.270 3206 4136 1 chr7B.!!$R1 930
4 TraesCS7A01G363400 chr4A 705718212 705719147 935 True 1123 1123 88.380 3206 4139 1 chr4A.!!$R1 933
5 TraesCS7A01G363400 chr3D 291979288 291980219 931 True 1035 1035 86.710 3206 4138 1 chr3D.!!$R1 932
6 TraesCS7A01G363400 chr6D 297692206 297693137 931 True 880 880 83.761 3206 4138 1 chr6D.!!$R1 932
7 TraesCS7A01G363400 chr6D 298000488 298001419 931 True 874 874 83.636 3206 4138 1 chr6D.!!$R2 932
8 TraesCS7A01G363400 chr3A 219722336 219723259 923 False 852 852 83.315 3211 4139 1 chr3A.!!$F1 928
9 TraesCS7A01G363400 chr1A 253533474 253534399 925 True 852 852 83.297 3213 4138 1 chr1A.!!$R1 925
10 TraesCS7A01G363400 chr1B 278925825 278926752 927 True 701 701 80.301 3211 4138 1 chr1B.!!$R1 927
11 TraesCS7A01G363400 chrUn 323654254 323655184 930 False 651 651 79.270 3206 4136 1 chrUn.!!$F1 930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 954 0.171007 CAATTAGCAACACCCCGCTG 59.829 55.0 0.00 0.00 39.30 5.18 F
1781 1808 0.039437 AACTAGTGCACACGAGTCGG 60.039 55.0 21.04 8.43 44.57 4.79 F
2962 3003 0.179100 GAGCAGAGCGTAGGATTGCA 60.179 55.0 9.36 0.00 37.24 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 2480 0.034059 GTACATGAGGATGAGCCCCG 59.966 60.0 0.0 0.0 37.37 5.73 R
3058 3099 0.106918 GGCGGGGTAAACCATGATCA 60.107 55.0 0.0 0.0 42.91 2.92 R
3910 3957 0.534877 TGATTGCACGCCACACTTCT 60.535 50.0 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 8.968969 AGATAGTTAAATCGTCAACCTAGAACT 58.031 33.333 0.00 0.00 0.00 3.01
146 147 7.025963 AGTTAAATCGTCAACCTAGAACTACG 58.974 38.462 0.00 0.00 0.00 3.51
147 148 2.907910 TCGTCAACCTAGAACTACGC 57.092 50.000 0.00 0.00 0.00 4.42
148 149 2.153645 TCGTCAACCTAGAACTACGCA 58.846 47.619 0.00 0.00 0.00 5.24
149 150 2.553602 TCGTCAACCTAGAACTACGCAA 59.446 45.455 0.00 0.00 0.00 4.85
150 151 3.004629 TCGTCAACCTAGAACTACGCAAA 59.995 43.478 0.00 0.00 0.00 3.68
151 152 3.924686 CGTCAACCTAGAACTACGCAAAT 59.075 43.478 0.00 0.00 0.00 2.32
152 153 4.201589 CGTCAACCTAGAACTACGCAAATG 60.202 45.833 0.00 0.00 0.00 2.32
153 154 4.927425 GTCAACCTAGAACTACGCAAATGA 59.073 41.667 0.00 0.00 0.00 2.57
154 155 4.927425 TCAACCTAGAACTACGCAAATGAC 59.073 41.667 0.00 0.00 0.00 3.06
155 156 4.803098 ACCTAGAACTACGCAAATGACT 57.197 40.909 0.00 0.00 0.00 3.41
156 157 5.148651 ACCTAGAACTACGCAAATGACTT 57.851 39.130 0.00 0.00 0.00 3.01
157 158 6.276832 ACCTAGAACTACGCAAATGACTTA 57.723 37.500 0.00 0.00 0.00 2.24
158 159 6.875076 ACCTAGAACTACGCAAATGACTTAT 58.125 36.000 0.00 0.00 0.00 1.73
159 160 7.328737 ACCTAGAACTACGCAAATGACTTATT 58.671 34.615 0.00 0.00 0.00 1.40
160 161 7.491696 ACCTAGAACTACGCAAATGACTTATTC 59.508 37.037 0.00 0.00 0.00 1.75
161 162 7.491372 CCTAGAACTACGCAAATGACTTATTCA 59.509 37.037 0.00 0.00 39.11 2.57
162 163 7.061752 AGAACTACGCAAATGACTTATTCAC 57.938 36.000 0.00 0.00 36.92 3.18
163 164 5.796350 ACTACGCAAATGACTTATTCACC 57.204 39.130 0.00 0.00 36.92 4.02
164 165 3.740044 ACGCAAATGACTTATTCACCG 57.260 42.857 0.00 0.00 36.92 4.94
165 166 3.331150 ACGCAAATGACTTATTCACCGA 58.669 40.909 0.00 0.00 36.92 4.69
166 167 3.370978 ACGCAAATGACTTATTCACCGAG 59.629 43.478 0.00 0.00 36.92 4.63
167 168 3.616821 CGCAAATGACTTATTCACCGAGA 59.383 43.478 0.00 0.00 36.92 4.04
168 169 4.492570 CGCAAATGACTTATTCACCGAGAC 60.493 45.833 0.00 0.00 36.92 3.36
169 170 4.492570 GCAAATGACTTATTCACCGAGACG 60.493 45.833 0.00 0.00 36.92 4.18
202 203 1.867233 ACTGACACAGCTTTAGTTGCG 59.133 47.619 0.00 0.00 34.37 4.85
221 222 3.001838 TGCGTCAATTAATTCGAATCGGG 59.998 43.478 11.83 0.35 0.00 5.14
364 381 4.091549 ACAATAGTTACGGAACAGAGGGA 58.908 43.478 14.18 0.00 38.10 4.20
366 383 2.305858 AGTTACGGAACAGAGGGAGT 57.694 50.000 14.18 0.00 38.10 3.85
496 519 4.943705 TCGTGAACCTTATACTTCGTACCT 59.056 41.667 0.00 0.00 0.00 3.08
552 575 8.994170 TCATTTTGATGTGTATCGAGTGTTTTA 58.006 29.630 0.00 0.00 36.04 1.52
553 576 9.605955 CATTTTGATGTGTATCGAGTGTTTTAA 57.394 29.630 0.00 0.00 36.04 1.52
595 618 5.806654 TTTTCATCCTTTCCCCTCAAAAG 57.193 39.130 0.00 0.00 34.25 2.27
596 619 4.740154 TTCATCCTTTCCCCTCAAAAGA 57.260 40.909 0.00 0.00 36.09 2.52
679 706 7.331026 TCAACCTGTTTTCCACTATGATCTAG 58.669 38.462 0.00 0.00 0.00 2.43
680 707 6.875972 ACCTGTTTTCCACTATGATCTAGT 57.124 37.500 0.00 0.00 0.00 2.57
681 708 7.973048 ACCTGTTTTCCACTATGATCTAGTA 57.027 36.000 0.00 0.00 0.00 1.82
682 709 8.554490 ACCTGTTTTCCACTATGATCTAGTAT 57.446 34.615 0.00 0.00 0.00 2.12
683 710 9.656323 ACCTGTTTTCCACTATGATCTAGTATA 57.344 33.333 0.00 0.00 0.00 1.47
822 849 2.630098 TGAGGTCTTCTGTGGAGTCAAG 59.370 50.000 0.00 0.00 0.00 3.02
841 868 1.437149 AGCTAGGGGCCTATGACCATA 59.563 52.381 0.84 0.00 43.05 2.74
842 869 2.046447 AGCTAGGGGCCTATGACCATAT 59.954 50.000 0.84 0.00 43.05 1.78
927 954 0.171007 CAATTAGCAACACCCCGCTG 59.829 55.000 0.00 0.00 39.30 5.18
951 978 0.654683 CGGCATTTGTCAGCTCTAGC 59.345 55.000 0.00 0.00 42.49 3.42
1075 1102 6.127168 ACGACTCACATCCCAAACATCTATTA 60.127 38.462 0.00 0.00 0.00 0.98
1188 1215 4.438608 GCGCTCTCGATGATGATCTCTTAT 60.439 45.833 0.00 0.00 38.10 1.73
1190 1217 5.581605 GCTCTCGATGATGATCTCTTATCC 58.418 45.833 0.00 0.00 0.00 2.59
1197 1224 5.459536 TGATGATCTCTTATCCCTTGACG 57.540 43.478 0.00 0.00 0.00 4.35
1220 1247 4.131649 TGTGTCGAAAATCCATACCGAT 57.868 40.909 0.00 0.00 0.00 4.18
1250 1277 3.483869 GCCAGGGCTTCCTCGGAT 61.484 66.667 2.30 0.00 39.29 4.18
1289 1316 0.679960 CCACCCCCGATGGAGTTTTC 60.680 60.000 0.00 0.00 39.87 2.29
1301 1328 1.700186 GGAGTTTTCCACCCAGTCTCT 59.300 52.381 0.00 0.00 43.45 3.10
1331 1358 2.802787 TAGCTGCTCTAATCCGCTTC 57.197 50.000 4.91 0.00 32.49 3.86
1334 1361 1.764851 CTGCTCTAATCCGCTTCTCG 58.235 55.000 0.00 0.00 38.08 4.04
1526 1553 0.246635 AGCAGCTATGGTTCGACGTT 59.753 50.000 0.00 0.00 31.66 3.99
1753 1780 0.782384 CTAGTGTCCACGTCGTTTGC 59.218 55.000 0.00 0.00 36.20 3.68
1779 1806 4.482386 TCATTAACTAGTGCACACGAGTC 58.518 43.478 21.04 0.00 44.57 3.36
1780 1807 2.606717 TAACTAGTGCACACGAGTCG 57.393 50.000 21.04 11.85 44.57 4.18
1781 1808 0.039437 AACTAGTGCACACGAGTCGG 60.039 55.000 21.04 8.43 44.57 4.79
1782 1809 1.801913 CTAGTGCACACGAGTCGGC 60.802 63.158 21.04 11.30 36.20 5.54
1783 1810 3.604494 TAGTGCACACGAGTCGGCG 62.604 63.158 21.04 10.06 36.20 6.46
1797 1830 4.779523 CGAGTCGGCGTTGTTTTTAAATAG 59.220 41.667 6.85 0.00 0.00 1.73
1801 1834 6.073112 AGTCGGCGTTGTTTTTAAATAGCTAA 60.073 34.615 6.85 0.00 0.00 3.09
1989 2022 2.279918 ACGGACGTGCACCAGTTC 60.280 61.111 12.15 1.85 0.00 3.01
2022 2055 2.015587 GAGCTGCTCATTTCAAGAGGG 58.984 52.381 24.02 0.00 33.72 4.30
2189 2222 2.354305 GGGCGCGATGTACTACGG 60.354 66.667 12.10 5.77 0.00 4.02
2194 2227 1.656569 GCGATGTACTACGGCGACC 60.657 63.158 16.62 0.00 0.00 4.79
2262 2295 3.952628 GAGCTTCGTCCCGGGGTTG 62.953 68.421 23.50 11.15 0.00 3.77
2430 2463 3.103911 GTGTTCGACGGCGTCCTG 61.104 66.667 31.86 20.05 38.98 3.86
2864 2898 6.440052 TGAAGGTTCATCTGTTGGAAACTGG 61.440 44.000 0.00 0.00 40.03 4.00
2866 2900 9.919717 TGAAGGTTCATCTGTTGGAAACTGGAA 62.920 40.741 0.00 0.00 40.03 3.53
2882 2916 3.128349 CTGGAAATTGTATCCCGTACGG 58.872 50.000 27.68 27.68 36.04 4.02
2962 3003 0.179100 GAGCAGAGCGTAGGATTGCA 60.179 55.000 9.36 0.00 37.24 4.08
2974 3015 2.046314 ATTGCAACGAGGGGTCCG 60.046 61.111 0.00 0.00 0.00 4.79
2975 3016 2.515996 GATTGCAACGAGGGGTCCGA 62.516 60.000 0.00 0.00 0.00 4.55
2976 3017 2.119484 ATTGCAACGAGGGGTCCGAA 62.119 55.000 0.00 0.00 0.00 4.30
2977 3018 2.434359 GCAACGAGGGGTCCGAAG 60.434 66.667 0.00 0.00 0.00 3.79
2990 3031 4.584688 CGAAGGGGGACACGTAAC 57.415 61.111 0.00 0.00 0.00 2.50
2991 3032 1.444895 CGAAGGGGGACACGTAACG 60.445 63.158 0.00 0.00 0.00 3.18
2992 3033 1.667722 GAAGGGGGACACGTAACGT 59.332 57.895 0.00 0.00 42.36 3.99
2993 3034 0.887933 GAAGGGGGACACGTAACGTA 59.112 55.000 0.00 0.00 38.32 3.57
2994 3035 1.272212 GAAGGGGGACACGTAACGTAA 59.728 52.381 0.00 0.00 38.32 3.18
2995 3036 1.560505 AGGGGGACACGTAACGTAAT 58.439 50.000 0.00 0.00 38.32 1.89
2996 3037 1.205417 AGGGGGACACGTAACGTAATG 59.795 52.381 0.00 0.00 38.32 1.90
2997 3038 1.643880 GGGGACACGTAACGTAATGG 58.356 55.000 0.00 0.00 38.32 3.16
2998 3039 1.204467 GGGGACACGTAACGTAATGGA 59.796 52.381 0.00 0.00 38.32 3.41
2999 3040 2.353605 GGGGACACGTAACGTAATGGAA 60.354 50.000 0.00 0.00 38.32 3.53
3000 3041 2.667969 GGGACACGTAACGTAATGGAAC 59.332 50.000 0.00 0.00 38.32 3.62
3001 3042 3.578688 GGACACGTAACGTAATGGAACT 58.421 45.455 0.00 0.00 38.32 3.01
3002 3043 3.609807 GGACACGTAACGTAATGGAACTC 59.390 47.826 0.00 0.00 38.32 3.01
3003 3044 4.479619 GACACGTAACGTAATGGAACTCT 58.520 43.478 0.00 0.00 38.32 3.24
3004 3045 4.232221 ACACGTAACGTAATGGAACTCTG 58.768 43.478 0.00 0.00 38.32 3.35
3005 3046 4.232221 CACGTAACGTAATGGAACTCTGT 58.768 43.478 0.00 0.00 38.32 3.41
3006 3047 4.682860 CACGTAACGTAATGGAACTCTGTT 59.317 41.667 0.00 0.00 38.32 3.16
3007 3048 5.858049 CACGTAACGTAATGGAACTCTGTTA 59.142 40.000 0.00 0.00 38.32 2.41
3008 3049 6.033196 CACGTAACGTAATGGAACTCTGTTAG 59.967 42.308 0.00 0.00 38.32 2.34
3009 3050 6.088824 CGTAACGTAATGGAACTCTGTTAGT 58.911 40.000 0.00 0.00 41.49 2.24
3010 3051 7.094805 ACGTAACGTAATGGAACTCTGTTAGTA 60.095 37.037 0.00 0.00 38.73 1.82
3011 3052 7.217070 CGTAACGTAATGGAACTCTGTTAGTAC 59.783 40.741 0.00 0.00 37.50 2.73
3012 3053 5.958955 ACGTAATGGAACTCTGTTAGTACC 58.041 41.667 0.00 0.00 37.50 3.34
3013 3054 5.713861 ACGTAATGGAACTCTGTTAGTACCT 59.286 40.000 0.00 0.00 37.50 3.08
3014 3055 6.127786 ACGTAATGGAACTCTGTTAGTACCTC 60.128 42.308 0.00 0.00 37.50 3.85
3015 3056 4.985538 ATGGAACTCTGTTAGTACCTCG 57.014 45.455 0.00 0.00 37.50 4.63
3016 3057 4.025040 TGGAACTCTGTTAGTACCTCGA 57.975 45.455 0.00 0.00 37.50 4.04
3017 3058 4.008330 TGGAACTCTGTTAGTACCTCGAG 58.992 47.826 5.13 5.13 37.50 4.04
3018 3059 4.009002 GGAACTCTGTTAGTACCTCGAGT 58.991 47.826 12.31 2.17 37.50 4.18
3019 3060 4.094739 GGAACTCTGTTAGTACCTCGAGTC 59.905 50.000 12.31 1.58 37.50 3.36
3020 3061 3.608796 ACTCTGTTAGTACCTCGAGTCC 58.391 50.000 12.31 0.00 36.36 3.85
3021 3062 3.263937 ACTCTGTTAGTACCTCGAGTCCT 59.736 47.826 12.31 6.34 36.36 3.85
3022 3063 3.871485 TCTGTTAGTACCTCGAGTCCTC 58.129 50.000 12.31 0.00 0.00 3.71
3023 3064 7.857699 ACTCTGTTAGTACCTCGAGTCCTCG 62.858 52.000 12.31 10.36 45.01 4.63
3037 3078 5.285798 GAGTCCTCGAATATAGGAACTCG 57.714 47.826 0.00 0.00 44.67 4.18
3038 3079 4.073549 AGTCCTCGAATATAGGAACTCGG 58.926 47.826 0.00 0.00 44.67 4.63
3039 3080 2.818432 TCCTCGAATATAGGAACTCGGC 59.182 50.000 0.00 0.00 40.23 5.54
3040 3081 2.557056 CCTCGAATATAGGAACTCGGCA 59.443 50.000 0.00 0.00 41.75 5.69
3041 3082 3.566523 CTCGAATATAGGAACTCGGCAC 58.433 50.000 0.00 0.00 41.75 5.01
3042 3083 6.892358 CCTCGAATATAGGAACTCGGCACG 62.892 54.167 0.00 0.00 45.77 5.34
3055 3096 3.834732 GGCACGACCAGTAGAACAT 57.165 52.632 0.00 0.00 38.86 2.71
3056 3097 1.641577 GGCACGACCAGTAGAACATC 58.358 55.000 0.00 0.00 38.86 3.06
3057 3098 1.067142 GGCACGACCAGTAGAACATCA 60.067 52.381 0.00 0.00 38.86 3.07
3058 3099 2.418746 GGCACGACCAGTAGAACATCAT 60.419 50.000 0.00 0.00 38.86 2.45
3059 3100 2.604914 GCACGACCAGTAGAACATCATG 59.395 50.000 0.00 0.00 0.00 3.07
3060 3101 3.676049 GCACGACCAGTAGAACATCATGA 60.676 47.826 0.00 0.00 0.00 3.07
3061 3102 4.686972 CACGACCAGTAGAACATCATGAT 58.313 43.478 1.18 1.18 0.00 2.45
3062 3103 4.742167 CACGACCAGTAGAACATCATGATC 59.258 45.833 4.86 0.00 0.00 2.92
3063 3104 4.402474 ACGACCAGTAGAACATCATGATCA 59.598 41.667 4.86 0.00 0.00 2.92
3064 3105 5.069648 ACGACCAGTAGAACATCATGATCAT 59.930 40.000 4.86 1.18 0.00 2.45
3065 3106 5.404667 CGACCAGTAGAACATCATGATCATG 59.595 44.000 26.79 26.79 40.09 3.07
3066 3107 5.618236 ACCAGTAGAACATCATGATCATGG 58.382 41.667 30.54 19.90 39.24 3.66
3067 3108 5.131642 ACCAGTAGAACATCATGATCATGGT 59.868 40.000 30.54 24.12 39.24 3.55
3068 3109 6.060136 CCAGTAGAACATCATGATCATGGTT 58.940 40.000 30.54 26.22 39.24 3.67
3069 3110 6.544931 CCAGTAGAACATCATGATCATGGTTT 59.455 38.462 30.54 20.97 39.24 3.27
3070 3111 7.716560 CCAGTAGAACATCATGATCATGGTTTA 59.283 37.037 30.54 15.27 39.24 2.01
3071 3112 8.554528 CAGTAGAACATCATGATCATGGTTTAC 58.445 37.037 30.54 25.09 39.24 2.01
3072 3113 6.949352 AGAACATCATGATCATGGTTTACC 57.051 37.500 30.54 16.98 39.24 2.85
3073 3114 5.829924 AGAACATCATGATCATGGTTTACCC 59.170 40.000 30.54 16.70 39.24 3.69
3074 3115 4.473444 ACATCATGATCATGGTTTACCCC 58.527 43.478 30.54 0.00 39.24 4.95
3075 3116 3.207265 TCATGATCATGGTTTACCCCG 57.793 47.619 30.54 5.99 39.24 5.73
3076 3117 1.608590 CATGATCATGGTTTACCCCGC 59.391 52.381 25.37 0.00 35.24 6.13
3077 3118 0.106918 TGATCATGGTTTACCCCGCC 60.107 55.000 0.00 0.00 34.29 6.13
3078 3119 0.822121 GATCATGGTTTACCCCGCCC 60.822 60.000 0.00 0.00 34.29 6.13
3079 3120 1.576368 ATCATGGTTTACCCCGCCCA 61.576 55.000 0.00 0.00 34.29 5.36
3080 3121 1.076339 CATGGTTTACCCCGCCCAT 60.076 57.895 0.00 0.00 38.20 4.00
3081 3122 1.106944 CATGGTTTACCCCGCCCATC 61.107 60.000 0.00 0.00 35.53 3.51
3082 3123 2.124024 GGTTTACCCCGCCCATCC 60.124 66.667 0.00 0.00 0.00 3.51
3083 3124 2.686572 GGTTTACCCCGCCCATCCT 61.687 63.158 0.00 0.00 0.00 3.24
3084 3125 1.305287 GTTTACCCCGCCCATCCTT 59.695 57.895 0.00 0.00 0.00 3.36
3085 3126 0.750546 GTTTACCCCGCCCATCCTTC 60.751 60.000 0.00 0.00 0.00 3.46
3086 3127 2.260088 TTTACCCCGCCCATCCTTCG 62.260 60.000 0.00 0.00 0.00 3.79
3087 3128 3.988050 TACCCCGCCCATCCTTCGT 62.988 63.158 0.00 0.00 0.00 3.85
3088 3129 4.856801 CCCCGCCCATCCTTCGTG 62.857 72.222 0.00 0.00 0.00 4.35
3089 3130 4.856801 CCCGCCCATCCTTCGTGG 62.857 72.222 0.00 0.00 36.47 4.94
3101 3142 4.996788 TCCTTCGTGGATAGTAAAGGTC 57.003 45.455 0.00 0.00 40.56 3.85
3102 3143 3.379372 TCCTTCGTGGATAGTAAAGGTCG 59.621 47.826 0.00 0.00 40.56 4.79
3103 3144 3.379372 CCTTCGTGGATAGTAAAGGTCGA 59.621 47.826 0.00 0.00 38.35 4.20
3104 3145 4.142315 CCTTCGTGGATAGTAAAGGTCGAA 60.142 45.833 0.00 0.00 38.35 3.71
3105 3146 5.389859 TTCGTGGATAGTAAAGGTCGAAA 57.610 39.130 0.00 0.00 34.14 3.46
3106 3147 4.990257 TCGTGGATAGTAAAGGTCGAAAG 58.010 43.478 0.00 0.00 0.00 2.62
3107 3148 4.110482 CGTGGATAGTAAAGGTCGAAAGG 58.890 47.826 0.00 0.00 0.00 3.11
3108 3149 4.381292 CGTGGATAGTAAAGGTCGAAAGGT 60.381 45.833 0.00 0.00 0.00 3.50
3109 3150 4.868734 GTGGATAGTAAAGGTCGAAAGGTG 59.131 45.833 0.00 0.00 0.00 4.00
3110 3151 4.529377 TGGATAGTAAAGGTCGAAAGGTGT 59.471 41.667 0.00 0.00 0.00 4.16
3111 3152 4.868734 GGATAGTAAAGGTCGAAAGGTGTG 59.131 45.833 0.00 0.00 0.00 3.82
3112 3153 3.832615 AGTAAAGGTCGAAAGGTGTGT 57.167 42.857 0.00 0.00 0.00 3.72
3113 3154 3.463944 AGTAAAGGTCGAAAGGTGTGTG 58.536 45.455 0.00 0.00 0.00 3.82
3114 3155 2.702592 AAAGGTCGAAAGGTGTGTGA 57.297 45.000 0.00 0.00 0.00 3.58
3115 3156 2.240493 AAGGTCGAAAGGTGTGTGAG 57.760 50.000 0.00 0.00 0.00 3.51
3116 3157 0.249911 AGGTCGAAAGGTGTGTGAGC 60.250 55.000 0.00 0.00 0.00 4.26
3117 3158 0.531974 GGTCGAAAGGTGTGTGAGCA 60.532 55.000 0.00 0.00 0.00 4.26
3118 3159 1.512926 GTCGAAAGGTGTGTGAGCAT 58.487 50.000 0.00 0.00 0.00 3.79
3119 3160 2.611971 GGTCGAAAGGTGTGTGAGCATA 60.612 50.000 0.00 0.00 0.00 3.14
3120 3161 3.064207 GTCGAAAGGTGTGTGAGCATAA 58.936 45.455 0.00 0.00 0.00 1.90
3121 3162 3.684788 GTCGAAAGGTGTGTGAGCATAAT 59.315 43.478 0.00 0.00 0.00 1.28
3122 3163 4.868171 GTCGAAAGGTGTGTGAGCATAATA 59.132 41.667 0.00 0.00 0.00 0.98
3123 3164 4.868171 TCGAAAGGTGTGTGAGCATAATAC 59.132 41.667 0.00 0.00 0.00 1.89
3124 3165 4.629634 CGAAAGGTGTGTGAGCATAATACA 59.370 41.667 0.00 0.00 0.00 2.29
3125 3166 5.220472 CGAAAGGTGTGTGAGCATAATACAG 60.220 44.000 0.00 0.00 0.00 2.74
3126 3167 4.826274 AGGTGTGTGAGCATAATACAGT 57.174 40.909 0.00 0.00 0.00 3.55
3127 3168 5.932619 AGGTGTGTGAGCATAATACAGTA 57.067 39.130 0.00 0.00 0.00 2.74
3128 3169 6.294361 AGGTGTGTGAGCATAATACAGTAA 57.706 37.500 0.00 0.00 0.00 2.24
3129 3170 6.889198 AGGTGTGTGAGCATAATACAGTAAT 58.111 36.000 0.00 0.00 0.00 1.89
3130 3171 6.986817 AGGTGTGTGAGCATAATACAGTAATC 59.013 38.462 0.00 0.00 0.00 1.75
3131 3172 6.986817 GGTGTGTGAGCATAATACAGTAATCT 59.013 38.462 0.00 0.00 0.00 2.40
3132 3173 7.042456 GGTGTGTGAGCATAATACAGTAATCTG 60.042 40.741 0.00 0.00 46.18 2.90
3133 3174 6.986231 TGTGTGAGCATAATACAGTAATCTGG 59.014 38.462 0.47 0.00 45.14 3.86
3134 3175 6.986817 GTGTGAGCATAATACAGTAATCTGGT 59.013 38.462 0.47 0.00 45.14 4.00
3135 3176 7.495934 GTGTGAGCATAATACAGTAATCTGGTT 59.504 37.037 0.47 0.00 45.14 3.67
3136 3177 8.046708 TGTGAGCATAATACAGTAATCTGGTTT 58.953 33.333 0.47 0.00 45.14 3.27
3137 3178 8.552034 GTGAGCATAATACAGTAATCTGGTTTC 58.448 37.037 0.47 0.00 45.14 2.78
3138 3179 8.264347 TGAGCATAATACAGTAATCTGGTTTCA 58.736 33.333 0.47 0.00 45.14 2.69
3139 3180 8.438676 AGCATAATACAGTAATCTGGTTTCAC 57.561 34.615 0.47 0.00 45.14 3.18
3140 3181 8.046708 AGCATAATACAGTAATCTGGTTTCACA 58.953 33.333 0.47 0.00 45.14 3.58
3141 3182 8.673711 GCATAATACAGTAATCTGGTTTCACAA 58.326 33.333 0.47 0.00 45.14 3.33
3144 3185 5.964958 ACAGTAATCTGGTTTCACAATGG 57.035 39.130 0.47 0.00 45.14 3.16
3145 3186 5.630121 ACAGTAATCTGGTTTCACAATGGA 58.370 37.500 0.47 0.00 45.14 3.41
3146 3187 6.248433 ACAGTAATCTGGTTTCACAATGGAT 58.752 36.000 0.47 0.00 45.14 3.41
3147 3188 6.721208 ACAGTAATCTGGTTTCACAATGGATT 59.279 34.615 0.47 0.00 45.14 3.01
3148 3189 7.031372 CAGTAATCTGGTTTCACAATGGATTG 58.969 38.462 0.00 0.00 39.42 2.67
3149 3190 7.309377 CAGTAATCTGGTTTCACAATGGATTGT 60.309 37.037 0.00 0.00 43.03 2.71
3166 3207 3.380479 TTGTACTCACAAAGTCCCTCG 57.620 47.619 0.00 0.00 41.69 4.63
3167 3208 2.589720 TGTACTCACAAAGTCCCTCGA 58.410 47.619 0.00 0.00 39.55 4.04
3168 3209 2.960384 TGTACTCACAAAGTCCCTCGAA 59.040 45.455 0.00 0.00 39.55 3.71
3169 3210 3.576982 TGTACTCACAAAGTCCCTCGAAT 59.423 43.478 0.00 0.00 39.55 3.34
3170 3211 4.768448 TGTACTCACAAAGTCCCTCGAATA 59.232 41.667 0.00 0.00 39.55 1.75
3171 3212 5.421056 TGTACTCACAAAGTCCCTCGAATAT 59.579 40.000 0.00 0.00 39.55 1.28
3172 3213 6.604396 TGTACTCACAAAGTCCCTCGAATATA 59.396 38.462 0.00 0.00 39.55 0.86
3173 3214 6.540438 ACTCACAAAGTCCCTCGAATATAA 57.460 37.500 0.00 0.00 30.02 0.98
3174 3215 6.574350 ACTCACAAAGTCCCTCGAATATAAG 58.426 40.000 0.00 0.00 30.02 1.73
3175 3216 6.154706 ACTCACAAAGTCCCTCGAATATAAGT 59.845 38.462 0.00 0.00 30.02 2.24
3176 3217 6.338146 TCACAAAGTCCCTCGAATATAAGTG 58.662 40.000 0.00 0.00 0.00 3.16
3177 3218 5.523916 CACAAAGTCCCTCGAATATAAGTGG 59.476 44.000 0.00 0.00 0.00 4.00
3178 3219 4.338379 AAGTCCCTCGAATATAAGTGGC 57.662 45.455 0.00 0.00 0.00 5.01
3179 3220 2.296471 AGTCCCTCGAATATAAGTGGCG 59.704 50.000 0.00 0.00 0.00 5.69
3180 3221 1.000506 TCCCTCGAATATAAGTGGCGC 59.999 52.381 0.00 0.00 0.00 6.53
3181 3222 1.429463 CCTCGAATATAAGTGGCGCC 58.571 55.000 22.73 22.73 0.00 6.53
3182 3223 1.270094 CCTCGAATATAAGTGGCGCCA 60.270 52.381 29.03 29.03 0.00 5.69
3183 3224 1.792949 CTCGAATATAAGTGGCGCCAC 59.207 52.381 45.27 45.27 46.50 5.01
3191 3232 3.354678 GTGGCGCCACTTCAATGT 58.645 55.556 44.62 0.00 43.12 2.71
3192 3233 1.081242 GTGGCGCCACTTCAATGTG 60.081 57.895 44.62 0.00 43.12 3.21
3202 3243 4.691860 CACTTCAATGTGGTCATCCTTC 57.308 45.455 0.00 0.00 34.56 3.46
3203 3244 4.330250 CACTTCAATGTGGTCATCCTTCT 58.670 43.478 0.00 0.00 34.56 2.85
3204 3245 5.491070 CACTTCAATGTGGTCATCCTTCTA 58.509 41.667 0.00 0.00 34.56 2.10
3241 3282 2.636830 CTCTTCCCGTCGTACCTTCTA 58.363 52.381 0.00 0.00 0.00 2.10
3278 3319 0.617413 CTGTTCAGATCACTGCCCCT 59.383 55.000 0.00 0.00 43.17 4.79
3382 3428 2.337879 AAACAGTCCAAGGCGCCTGA 62.338 55.000 33.60 21.94 0.00 3.86
3463 3509 4.104383 AGCAAAGGACCTCAAAATCTGA 57.896 40.909 0.00 0.00 0.00 3.27
3541 3587 0.945099 TACGCCTCGACATAGCTCAG 59.055 55.000 0.00 0.00 0.00 3.35
3545 3591 1.686355 CCTCGACATAGCTCAGGAGT 58.314 55.000 0.00 0.00 0.00 3.85
3559 3605 0.850784 AGGAGTCTAGAGCCCTCTCC 59.149 60.000 15.41 15.41 43.29 3.71
3692 3739 1.507141 CGCGCCAACAACCTTCTTCT 61.507 55.000 0.00 0.00 0.00 2.85
3714 3761 2.139118 GGCGAAGATCAATGCTAGGAC 58.861 52.381 0.00 0.00 0.00 3.85
3744 3791 3.441222 GCATTCATCCACACACTTCATGA 59.559 43.478 0.00 0.00 0.00 3.07
3799 3846 6.521151 AAGGAAAACTTGATCCATGATCAC 57.479 37.500 6.28 0.00 46.87 3.06
3811 3858 2.368221 CCATGATCACTTCTCCTCCCTC 59.632 54.545 0.00 0.00 0.00 4.30
3939 3986 0.179181 CGTGCAATCAAAGCATCGCT 60.179 50.000 0.00 0.00 44.79 4.93
3943 3990 0.864377 CAATCAAAGCATCGCTGGCG 60.864 55.000 8.80 8.80 39.62 5.69
3997 4044 3.870274 CATCTTCTTCAGGTCATGCTGA 58.130 45.455 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 8.968969 AGTTCTAGGTTGACGATTTAACTATCT 58.031 33.333 0.00 0.00 0.00 1.98
120 121 8.177663 CGTAGTTCTAGGTTGACGATTTAACTA 58.822 37.037 0.00 0.00 32.20 2.24
121 122 7.025963 CGTAGTTCTAGGTTGACGATTTAACT 58.974 38.462 0.00 0.00 32.20 2.24
122 123 6.237411 GCGTAGTTCTAGGTTGACGATTTAAC 60.237 42.308 10.86 0.00 32.20 2.01
123 124 5.801947 GCGTAGTTCTAGGTTGACGATTTAA 59.198 40.000 10.86 0.00 32.20 1.52
124 125 5.106197 TGCGTAGTTCTAGGTTGACGATTTA 60.106 40.000 10.86 0.00 32.20 1.40
125 126 4.171754 GCGTAGTTCTAGGTTGACGATTT 58.828 43.478 10.86 0.00 32.20 2.17
126 127 3.192001 TGCGTAGTTCTAGGTTGACGATT 59.808 43.478 10.86 0.00 32.20 3.34
127 128 2.751259 TGCGTAGTTCTAGGTTGACGAT 59.249 45.455 10.86 0.00 32.20 3.73
128 129 2.153645 TGCGTAGTTCTAGGTTGACGA 58.846 47.619 10.86 0.00 32.20 4.20
129 130 2.624316 TGCGTAGTTCTAGGTTGACG 57.376 50.000 0.00 0.00 0.00 4.35
130 131 4.927425 TCATTTGCGTAGTTCTAGGTTGAC 59.073 41.667 0.00 0.00 0.00 3.18
131 132 4.927425 GTCATTTGCGTAGTTCTAGGTTGA 59.073 41.667 0.00 0.00 0.00 3.18
132 133 4.929808 AGTCATTTGCGTAGTTCTAGGTTG 59.070 41.667 0.00 0.00 0.00 3.77
133 134 5.148651 AGTCATTTGCGTAGTTCTAGGTT 57.851 39.130 0.00 0.00 0.00 3.50
134 135 4.803098 AGTCATTTGCGTAGTTCTAGGT 57.197 40.909 0.00 0.00 0.00 3.08
135 136 7.491372 TGAATAAGTCATTTGCGTAGTTCTAGG 59.509 37.037 0.00 0.00 0.00 3.02
136 137 8.321716 GTGAATAAGTCATTTGCGTAGTTCTAG 58.678 37.037 0.00 0.00 38.90 2.43
137 138 7.277098 GGTGAATAAGTCATTTGCGTAGTTCTA 59.723 37.037 0.00 0.00 38.90 2.10
138 139 6.092259 GGTGAATAAGTCATTTGCGTAGTTCT 59.908 38.462 0.00 0.00 38.90 3.01
139 140 6.248631 GGTGAATAAGTCATTTGCGTAGTTC 58.751 40.000 0.00 0.00 38.90 3.01
140 141 5.163893 CGGTGAATAAGTCATTTGCGTAGTT 60.164 40.000 0.00 0.00 38.90 2.24
141 142 4.328983 CGGTGAATAAGTCATTTGCGTAGT 59.671 41.667 0.00 0.00 38.90 2.73
142 143 4.565166 TCGGTGAATAAGTCATTTGCGTAG 59.435 41.667 0.00 0.00 38.90 3.51
143 144 4.496360 TCGGTGAATAAGTCATTTGCGTA 58.504 39.130 0.00 0.00 38.90 4.42
144 145 3.331150 TCGGTGAATAAGTCATTTGCGT 58.669 40.909 0.00 0.00 38.90 5.24
145 146 3.616821 TCTCGGTGAATAAGTCATTTGCG 59.383 43.478 0.00 0.00 38.90 4.85
146 147 4.492570 CGTCTCGGTGAATAAGTCATTTGC 60.493 45.833 0.00 0.00 38.90 3.68
147 148 4.032900 CCGTCTCGGTGAATAAGTCATTTG 59.967 45.833 0.00 0.00 42.73 2.32
148 149 4.181578 CCGTCTCGGTGAATAAGTCATTT 58.818 43.478 0.00 0.00 42.73 2.32
149 150 3.782046 CCGTCTCGGTGAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
150 151 3.438297 CCGTCTCGGTGAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
151 152 2.933495 CCGTCTCGGTGAATAAGTCA 57.067 50.000 0.00 0.00 42.73 3.41
162 163 5.550393 AGTGAGTACTACCTCCGTCTCGG 62.550 56.522 0.00 1.45 41.30 4.63
163 164 1.932511 GTGAGTACTACCTCCGTCTCG 59.067 57.143 0.00 0.00 0.00 4.04
164 165 2.937799 CAGTGAGTACTACCTCCGTCTC 59.062 54.545 0.00 0.00 34.74 3.36
165 166 2.570752 TCAGTGAGTACTACCTCCGTCT 59.429 50.000 0.00 0.00 34.74 4.18
166 167 2.677337 GTCAGTGAGTACTACCTCCGTC 59.323 54.545 0.00 0.00 34.74 4.79
167 168 2.039480 TGTCAGTGAGTACTACCTCCGT 59.961 50.000 0.00 0.00 34.74 4.69
168 169 2.419324 GTGTCAGTGAGTACTACCTCCG 59.581 54.545 0.00 0.00 34.74 4.63
169 170 3.418995 TGTGTCAGTGAGTACTACCTCC 58.581 50.000 0.00 0.00 34.74 4.30
170 171 3.119779 GCTGTGTCAGTGAGTACTACCTC 60.120 52.174 0.00 0.00 34.74 3.85
171 172 2.820787 GCTGTGTCAGTGAGTACTACCT 59.179 50.000 0.00 0.00 34.74 3.08
172 173 2.820787 AGCTGTGTCAGTGAGTACTACC 59.179 50.000 0.00 0.00 34.74 3.18
175 176 4.585162 ACTAAAGCTGTGTCAGTGAGTACT 59.415 41.667 0.00 0.00 37.75 2.73
202 203 4.483476 CCCCCGATTCGAATTAATTGAC 57.517 45.455 12.81 0.00 0.00 3.18
256 259 9.686683 AATTAGAGAACTGCCAGTAAATACATT 57.313 29.630 0.00 0.00 0.00 2.71
259 262 9.043079 GGTAATTAGAGAACTGCCAGTAAATAC 57.957 37.037 0.00 0.00 0.00 1.89
260 263 8.989131 AGGTAATTAGAGAACTGCCAGTAAATA 58.011 33.333 0.00 0.00 0.00 1.40
261 264 7.862675 AGGTAATTAGAGAACTGCCAGTAAAT 58.137 34.615 0.00 0.00 0.00 1.40
262 265 7.253905 AGGTAATTAGAGAACTGCCAGTAAA 57.746 36.000 0.00 0.00 0.00 2.01
338 355 6.183360 CCCTCTGTTCCGTAACTATTGTCATA 60.183 42.308 0.00 0.00 36.51 2.15
340 357 4.081862 CCCTCTGTTCCGTAACTATTGTCA 60.082 45.833 0.00 0.00 36.51 3.58
348 365 4.732672 AATACTCCCTCTGTTCCGTAAC 57.267 45.455 0.00 0.00 36.07 2.50
496 519 8.682710 ACAAAACTAAGCAGATTAACTTTGACA 58.317 29.630 14.46 0.00 33.37 3.58
552 575 0.763652 TGTTGCAACATGCCCCAATT 59.236 45.000 27.96 0.00 44.23 2.32
553 576 0.763652 TTGTTGCAACATGCCCCAAT 59.236 45.000 31.48 0.00 44.23 3.16
554 577 0.763652 ATTGTTGCAACATGCCCCAA 59.236 45.000 31.48 16.10 44.23 4.12
555 578 0.763652 AATTGTTGCAACATGCCCCA 59.236 45.000 31.48 16.84 44.23 4.96
656 683 7.259088 ACTAGATCATAGTGGAAAACAGGTT 57.741 36.000 0.00 0.00 0.00 3.50
690 717 6.824196 TGGTAATTTTGTATATGACGAGGCAA 59.176 34.615 0.00 0.00 0.00 4.52
723 750 4.514066 GCCCAACCGACGAGATTTAAATAT 59.486 41.667 0.00 0.00 0.00 1.28
814 841 0.398664 TAGGCCCCTAGCTTGACTCC 60.399 60.000 0.00 0.00 43.05 3.85
822 849 1.952621 TATGGTCATAGGCCCCTAGC 58.047 55.000 0.00 0.00 42.60 3.42
842 869 9.868277 CAAACATATGGTCCTAAAAATAAAGCA 57.132 29.630 7.80 0.00 0.00 3.91
927 954 2.180017 CTGACAAATGCCGGCAGC 59.820 61.111 35.36 20.17 44.14 5.25
1188 1215 0.460722 TTCGACACAACGTCAAGGGA 59.539 50.000 0.00 0.00 45.70 4.20
1190 1217 3.541711 GATTTTCGACACAACGTCAAGG 58.458 45.455 0.00 0.00 45.70 3.61
1197 1224 3.680937 TCGGTATGGATTTTCGACACAAC 59.319 43.478 0.00 0.00 0.00 3.32
1238 1265 1.667154 GGCCAAAATCCGAGGAAGCC 61.667 60.000 0.00 0.73 0.00 4.35
1241 1268 0.111446 TGTGGCCAAAATCCGAGGAA 59.889 50.000 7.24 0.00 0.00 3.36
1277 1304 1.271379 ACTGGGTGGAAAACTCCATCG 60.271 52.381 0.00 0.00 41.72 3.84
1278 1305 2.040412 AGACTGGGTGGAAAACTCCATC 59.960 50.000 0.00 0.00 42.41 3.51
1283 1310 1.700186 GGAGAGACTGGGTGGAAAACT 59.300 52.381 0.00 0.00 0.00 2.66
1289 1316 3.775654 GCGGGAGAGACTGGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
1295 1322 0.820074 CTATGTCGGCGGGAGAGACT 60.820 60.000 7.21 0.00 38.97 3.24
1301 1328 4.221422 GCAGCTATGTCGGCGGGA 62.221 66.667 7.21 0.00 34.52 5.14
1514 1541 2.007049 GCATGGAGAACGTCGAACCAT 61.007 52.381 0.00 9.58 41.25 3.55
1526 1553 1.078918 CTTGAGCGTGGCATGGAGA 60.079 57.895 9.08 0.00 0.00 3.71
1574 1601 1.514087 GACGGTGATGCGGAGGTAA 59.486 57.895 0.00 0.00 0.00 2.85
1753 1780 5.161358 TCGTGTGCACTAGTTAATGAAGAG 58.839 41.667 19.41 0.00 0.00 2.85
1779 1806 6.914760 TTTAGCTATTTAAAAACAACGCCG 57.085 33.333 0.00 0.00 0.00 6.46
1780 1807 9.135843 AGATTTTAGCTATTTAAAAACAACGCC 57.864 29.630 0.00 0.00 36.44 5.68
1781 1808 9.937577 CAGATTTTAGCTATTTAAAAACAACGC 57.062 29.630 0.00 0.00 36.44 4.84
1797 1830 2.095768 TGCAGCGAACACAGATTTTAGC 60.096 45.455 0.00 0.00 0.00 3.09
1801 1834 0.877071 CCTGCAGCGAACACAGATTT 59.123 50.000 8.66 0.00 33.10 2.17
1989 2022 2.031516 CAGCTCTTGGTCAGCGGTG 61.032 63.158 8.67 8.67 42.14 4.94
2022 2055 3.752339 ACGTAGTCGAACCCGGCC 61.752 66.667 0.00 0.00 42.24 6.13
2046 2079 2.583441 CCGGTTCAGCTGGACCTGA 61.583 63.158 36.00 4.69 46.81 3.86
2202 2235 4.444838 TTCCGATCCACCGTGGCG 62.445 66.667 13.19 11.27 37.47 5.69
2447 2480 0.034059 GTACATGAGGATGAGCCCCG 59.966 60.000 0.00 0.00 37.37 5.73
2631 2664 2.757077 AGGTACTGCTTGCACCCC 59.243 61.111 0.00 0.00 37.18 4.95
2833 2866 5.278169 CCAACAGATGAACCTTCAACTTGAG 60.278 44.000 0.00 0.00 38.11 3.02
2864 2898 1.869132 GGCCGTACGGGATACAATTTC 59.131 52.381 33.98 13.90 38.47 2.17
2866 2900 0.249573 CGGCCGTACGGGATACAATT 60.250 55.000 33.98 0.00 38.47 2.32
2867 2901 1.364901 CGGCCGTACGGGATACAAT 59.635 57.895 33.98 0.00 38.47 2.71
2868 2902 2.051518 ACGGCCGTACGGGATACAA 61.052 57.895 33.34 0.00 38.47 2.41
2869 2903 2.440065 ACGGCCGTACGGGATACA 60.440 61.111 33.34 0.00 38.47 2.29
2870 2904 2.026590 CACGGCCGTACGGGATAC 59.973 66.667 33.70 17.91 40.35 2.24
2871 2905 3.903282 GCACGGCCGTACGGGATA 61.903 66.667 33.70 0.00 40.35 2.59
2911 2945 2.501723 ACACCTACTGAATACTGCCCAG 59.498 50.000 0.00 0.00 0.00 4.45
2915 2949 4.865365 GTCTGAACACCTACTGAATACTGC 59.135 45.833 0.00 0.00 0.00 4.40
2962 3003 3.001406 CCCTTCGGACCCCTCGTT 61.001 66.667 0.00 0.00 0.00 3.85
2974 3015 0.887933 TACGTTACGTGTCCCCCTTC 59.112 55.000 21.22 0.00 41.39 3.46
2975 3016 1.337118 TTACGTTACGTGTCCCCCTT 58.663 50.000 21.22 0.00 41.39 3.95
2976 3017 1.205417 CATTACGTTACGTGTCCCCCT 59.795 52.381 21.22 0.00 41.39 4.79
2977 3018 1.643880 CATTACGTTACGTGTCCCCC 58.356 55.000 21.22 0.00 41.39 5.40
2978 3019 1.204467 TCCATTACGTTACGTGTCCCC 59.796 52.381 21.22 0.00 41.39 4.81
2979 3020 2.652941 TCCATTACGTTACGTGTCCC 57.347 50.000 21.22 0.00 41.39 4.46
2980 3021 3.578688 AGTTCCATTACGTTACGTGTCC 58.421 45.455 21.22 1.53 41.39 4.02
2981 3022 4.322804 CAGAGTTCCATTACGTTACGTGTC 59.677 45.833 21.22 4.35 41.39 3.67
2982 3023 4.232221 CAGAGTTCCATTACGTTACGTGT 58.768 43.478 21.22 6.23 41.39 4.49
2983 3024 4.232221 ACAGAGTTCCATTACGTTACGTG 58.768 43.478 21.22 3.50 41.39 4.49
2984 3025 4.510038 ACAGAGTTCCATTACGTTACGT 57.490 40.909 16.31 16.31 44.35 3.57
2985 3026 6.088824 ACTAACAGAGTTCCATTACGTTACG 58.911 40.000 2.19 2.19 33.13 3.18
2986 3027 7.486232 GGTACTAACAGAGTTCCATTACGTTAC 59.514 40.741 0.00 0.00 43.46 2.50
2987 3028 7.394359 AGGTACTAACAGAGTTCCATTACGTTA 59.606 37.037 0.00 0.00 45.78 3.18
2988 3029 6.210185 AGGTACTAACAGAGTTCCATTACGTT 59.790 38.462 0.00 0.00 45.78 3.99
2989 3030 5.713861 AGGTACTAACAGAGTTCCATTACGT 59.286 40.000 0.00 0.00 45.78 3.57
2990 3031 6.205101 AGGTACTAACAGAGTTCCATTACG 57.795 41.667 3.61 0.00 45.78 3.18
2991 3032 6.094603 TCGAGGTACTAACAGAGTTCCATTAC 59.905 42.308 3.61 0.00 45.78 1.89
2992 3033 6.182627 TCGAGGTACTAACAGAGTTCCATTA 58.817 40.000 3.61 0.00 45.78 1.90
2993 3034 5.014858 TCGAGGTACTAACAGAGTTCCATT 58.985 41.667 3.61 0.00 45.78 3.16
2994 3035 4.597004 TCGAGGTACTAACAGAGTTCCAT 58.403 43.478 3.61 0.00 45.78 3.41
2995 3036 4.008330 CTCGAGGTACTAACAGAGTTCCA 58.992 47.826 3.91 0.00 45.78 3.53
2996 3037 4.009002 ACTCGAGGTACTAACAGAGTTCC 58.991 47.826 18.41 0.00 44.15 3.62
2997 3038 4.094739 GGACTCGAGGTACTAACAGAGTTC 59.905 50.000 18.41 0.00 41.55 3.01
2998 3039 4.009002 GGACTCGAGGTACTAACAGAGTT 58.991 47.826 18.41 0.00 41.55 3.01
2999 3040 3.263937 AGGACTCGAGGTACTAACAGAGT 59.736 47.826 18.41 8.78 41.55 3.24
3000 3041 3.872771 GAGGACTCGAGGTACTAACAGAG 59.127 52.174 18.41 0.00 39.65 3.35
3001 3042 3.871485 GAGGACTCGAGGTACTAACAGA 58.129 50.000 18.41 0.00 39.65 3.41
3015 3056 4.154556 CCGAGTTCCTATATTCGAGGACTC 59.845 50.000 0.00 0.00 42.96 3.36
3016 3057 4.073549 CCGAGTTCCTATATTCGAGGACT 58.926 47.826 0.00 0.00 42.96 3.85
3017 3058 3.366171 GCCGAGTTCCTATATTCGAGGAC 60.366 52.174 0.00 0.00 42.96 3.85
3018 3059 2.818432 GCCGAGTTCCTATATTCGAGGA 59.182 50.000 0.00 0.00 41.52 3.71
3019 3060 2.557056 TGCCGAGTTCCTATATTCGAGG 59.443 50.000 0.00 0.00 35.19 4.63
3020 3061 3.566523 GTGCCGAGTTCCTATATTCGAG 58.433 50.000 0.00 0.00 35.19 4.04
3021 3062 2.031420 CGTGCCGAGTTCCTATATTCGA 60.031 50.000 0.00 0.00 35.19 3.71
3022 3063 2.031420 TCGTGCCGAGTTCCTATATTCG 60.031 50.000 0.00 0.00 0.00 3.34
3023 3064 3.306818 GTCGTGCCGAGTTCCTATATTC 58.693 50.000 0.00 0.00 36.23 1.75
3024 3065 2.035576 GGTCGTGCCGAGTTCCTATATT 59.964 50.000 0.00 0.00 36.23 1.28
3025 3066 1.612463 GGTCGTGCCGAGTTCCTATAT 59.388 52.381 0.00 0.00 36.23 0.86
3026 3067 1.027357 GGTCGTGCCGAGTTCCTATA 58.973 55.000 0.00 0.00 36.23 1.31
3027 3068 0.968901 TGGTCGTGCCGAGTTCCTAT 60.969 55.000 0.00 0.00 41.21 2.57
3028 3069 1.592400 CTGGTCGTGCCGAGTTCCTA 61.592 60.000 0.00 0.00 41.21 2.94
3029 3070 2.915659 TGGTCGTGCCGAGTTCCT 60.916 61.111 0.00 0.00 41.21 3.36
3030 3071 1.870055 TACTGGTCGTGCCGAGTTCC 61.870 60.000 0.00 0.00 41.21 3.62
3031 3072 0.456312 CTACTGGTCGTGCCGAGTTC 60.456 60.000 0.00 0.00 41.21 3.01
3032 3073 0.892358 TCTACTGGTCGTGCCGAGTT 60.892 55.000 0.00 0.00 41.21 3.01
3033 3074 0.892358 TTCTACTGGTCGTGCCGAGT 60.892 55.000 0.00 0.00 41.21 4.18
3034 3075 0.456312 GTTCTACTGGTCGTGCCGAG 60.456 60.000 0.00 0.00 41.21 4.63
3035 3076 1.174078 TGTTCTACTGGTCGTGCCGA 61.174 55.000 0.00 0.00 41.21 5.54
3036 3077 0.108804 ATGTTCTACTGGTCGTGCCG 60.109 55.000 0.00 0.00 41.21 5.69
3037 3078 1.067142 TGATGTTCTACTGGTCGTGCC 60.067 52.381 0.00 0.00 37.90 5.01
3038 3079 2.363788 TGATGTTCTACTGGTCGTGC 57.636 50.000 0.00 0.00 0.00 5.34
3039 3080 4.110036 TCATGATGTTCTACTGGTCGTG 57.890 45.455 0.00 0.00 0.00 4.35
3040 3081 4.402474 TGATCATGATGTTCTACTGGTCGT 59.598 41.667 14.30 0.00 0.00 4.34
3041 3082 4.936891 TGATCATGATGTTCTACTGGTCG 58.063 43.478 14.30 0.00 0.00 4.79
3042 3083 5.699915 CCATGATCATGATGTTCTACTGGTC 59.300 44.000 32.71 0.00 41.20 4.02
3043 3084 5.131642 ACCATGATCATGATGTTCTACTGGT 59.868 40.000 32.71 18.27 41.20 4.00
3044 3085 5.618236 ACCATGATCATGATGTTCTACTGG 58.382 41.667 32.71 17.65 41.20 4.00
3045 3086 7.563888 AAACCATGATCATGATGTTCTACTG 57.436 36.000 32.71 16.20 41.20 2.74
3046 3087 7.716998 GGTAAACCATGATCATGATGTTCTACT 59.283 37.037 32.71 17.09 41.20 2.57
3047 3088 7.041098 GGGTAAACCATGATCATGATGTTCTAC 60.041 40.741 32.71 25.59 41.20 2.59
3048 3089 6.998074 GGGTAAACCATGATCATGATGTTCTA 59.002 38.462 32.71 19.35 41.20 2.10
3049 3090 5.829924 GGGTAAACCATGATCATGATGTTCT 59.170 40.000 32.71 20.10 41.20 3.01
3050 3091 5.010012 GGGGTAAACCATGATCATGATGTTC 59.990 44.000 32.71 19.63 42.91 3.18
3051 3092 4.895297 GGGGTAAACCATGATCATGATGTT 59.105 41.667 32.71 25.11 42.91 2.71
3052 3093 4.473444 GGGGTAAACCATGATCATGATGT 58.527 43.478 32.71 21.34 42.91 3.06
3053 3094 3.503363 CGGGGTAAACCATGATCATGATG 59.497 47.826 32.71 20.73 42.91 3.07
3054 3095 3.754965 CGGGGTAAACCATGATCATGAT 58.245 45.455 32.71 17.48 42.91 2.45
3055 3096 2.748132 GCGGGGTAAACCATGATCATGA 60.748 50.000 32.71 13.36 42.91 3.07
3056 3097 1.608590 GCGGGGTAAACCATGATCATG 59.391 52.381 25.97 25.97 42.91 3.07
3057 3098 1.478654 GGCGGGGTAAACCATGATCAT 60.479 52.381 1.18 1.18 42.91 2.45
3058 3099 0.106918 GGCGGGGTAAACCATGATCA 60.107 55.000 0.00 0.00 42.91 2.92
3059 3100 0.822121 GGGCGGGGTAAACCATGATC 60.822 60.000 0.81 0.00 42.91 2.92
3060 3101 1.229076 GGGCGGGGTAAACCATGAT 59.771 57.895 0.81 0.00 42.91 2.45
3061 3102 1.576368 ATGGGCGGGGTAAACCATGA 61.576 55.000 0.81 0.00 41.88 3.07
3062 3103 1.076339 ATGGGCGGGGTAAACCATG 60.076 57.895 0.81 0.00 41.88 3.66
3063 3104 1.229076 GATGGGCGGGGTAAACCAT 59.771 57.895 0.81 0.00 45.87 3.55
3064 3105 2.678470 GATGGGCGGGGTAAACCA 59.322 61.111 0.81 0.00 42.91 3.67
3065 3106 2.124024 GGATGGGCGGGGTAAACC 60.124 66.667 0.00 0.00 39.11 3.27
3066 3107 0.750546 GAAGGATGGGCGGGGTAAAC 60.751 60.000 0.00 0.00 0.00 2.01
3067 3108 1.610873 GAAGGATGGGCGGGGTAAA 59.389 57.895 0.00 0.00 0.00 2.01
3068 3109 2.737881 CGAAGGATGGGCGGGGTAA 61.738 63.158 0.00 0.00 0.00 2.85
3069 3110 3.158648 CGAAGGATGGGCGGGGTA 61.159 66.667 0.00 0.00 0.00 3.69
3071 3112 4.856801 CACGAAGGATGGGCGGGG 62.857 72.222 0.00 0.00 0.00 5.73
3072 3113 4.856801 CCACGAAGGATGGGCGGG 62.857 72.222 0.00 0.00 41.22 6.13
3073 3114 3.781307 TCCACGAAGGATGGGCGG 61.781 66.667 0.00 0.00 43.07 6.13
3081 3122 3.379372 TCGACCTTTACTATCCACGAAGG 59.621 47.826 0.00 0.00 41.98 3.46
3082 3123 4.627611 TCGACCTTTACTATCCACGAAG 57.372 45.455 0.00 0.00 0.00 3.79
3083 3124 5.389859 TTTCGACCTTTACTATCCACGAA 57.610 39.130 0.00 0.00 36.89 3.85
3084 3125 4.142315 CCTTTCGACCTTTACTATCCACGA 60.142 45.833 0.00 0.00 0.00 4.35
3085 3126 4.110482 CCTTTCGACCTTTACTATCCACG 58.890 47.826 0.00 0.00 0.00 4.94
3086 3127 4.868734 CACCTTTCGACCTTTACTATCCAC 59.131 45.833 0.00 0.00 0.00 4.02
3087 3128 4.529377 ACACCTTTCGACCTTTACTATCCA 59.471 41.667 0.00 0.00 0.00 3.41
3088 3129 4.868734 CACACCTTTCGACCTTTACTATCC 59.131 45.833 0.00 0.00 0.00 2.59
3089 3130 5.347907 CACACACCTTTCGACCTTTACTATC 59.652 44.000 0.00 0.00 0.00 2.08
3090 3131 5.011329 TCACACACCTTTCGACCTTTACTAT 59.989 40.000 0.00 0.00 0.00 2.12
3091 3132 4.341806 TCACACACCTTTCGACCTTTACTA 59.658 41.667 0.00 0.00 0.00 1.82
3092 3133 3.133362 TCACACACCTTTCGACCTTTACT 59.867 43.478 0.00 0.00 0.00 2.24
3093 3134 3.460103 TCACACACCTTTCGACCTTTAC 58.540 45.455 0.00 0.00 0.00 2.01
3094 3135 3.724374 CTCACACACCTTTCGACCTTTA 58.276 45.455 0.00 0.00 0.00 1.85
3095 3136 2.561569 CTCACACACCTTTCGACCTTT 58.438 47.619 0.00 0.00 0.00 3.11
3096 3137 1.810412 GCTCACACACCTTTCGACCTT 60.810 52.381 0.00 0.00 0.00 3.50
3097 3138 0.249911 GCTCACACACCTTTCGACCT 60.250 55.000 0.00 0.00 0.00 3.85
3098 3139 0.531974 TGCTCACACACCTTTCGACC 60.532 55.000 0.00 0.00 0.00 4.79
3099 3140 1.512926 ATGCTCACACACCTTTCGAC 58.487 50.000 0.00 0.00 0.00 4.20
3100 3141 3.394674 TTATGCTCACACACCTTTCGA 57.605 42.857 0.00 0.00 0.00 3.71
3101 3142 4.629634 TGTATTATGCTCACACACCTTTCG 59.370 41.667 0.00 0.00 0.00 3.46
3102 3143 5.643777 ACTGTATTATGCTCACACACCTTTC 59.356 40.000 0.00 0.00 0.00 2.62
3103 3144 5.560724 ACTGTATTATGCTCACACACCTTT 58.439 37.500 0.00 0.00 0.00 3.11
3104 3145 5.165961 ACTGTATTATGCTCACACACCTT 57.834 39.130 0.00 0.00 0.00 3.50
3105 3146 4.826274 ACTGTATTATGCTCACACACCT 57.174 40.909 0.00 0.00 0.00 4.00
3106 3147 6.986817 AGATTACTGTATTATGCTCACACACC 59.013 38.462 0.00 0.00 0.00 4.16
3107 3148 7.042456 CCAGATTACTGTATTATGCTCACACAC 60.042 40.741 0.00 0.00 42.05 3.82
3108 3149 6.986231 CCAGATTACTGTATTATGCTCACACA 59.014 38.462 0.00 0.00 42.05 3.72
3109 3150 6.986817 ACCAGATTACTGTATTATGCTCACAC 59.013 38.462 0.00 0.00 42.05 3.82
3110 3151 7.124573 ACCAGATTACTGTATTATGCTCACA 57.875 36.000 0.00 0.00 42.05 3.58
3111 3152 8.438676 AAACCAGATTACTGTATTATGCTCAC 57.561 34.615 0.00 0.00 42.05 3.51
3112 3153 8.264347 TGAAACCAGATTACTGTATTATGCTCA 58.736 33.333 0.00 0.90 42.05 4.26
3113 3154 8.552034 GTGAAACCAGATTACTGTATTATGCTC 58.448 37.037 0.00 0.00 42.05 4.26
3114 3155 8.046708 TGTGAAACCAGATTACTGTATTATGCT 58.953 33.333 0.00 0.00 42.05 3.79
3115 3156 8.208718 TGTGAAACCAGATTACTGTATTATGC 57.791 34.615 0.00 0.00 42.05 3.14
3118 3159 9.173021 CCATTGTGAAACCAGATTACTGTATTA 57.827 33.333 0.00 0.00 42.05 0.98
3119 3160 7.888021 TCCATTGTGAAACCAGATTACTGTATT 59.112 33.333 0.00 0.00 42.05 1.89
3120 3161 7.402054 TCCATTGTGAAACCAGATTACTGTAT 58.598 34.615 0.00 0.00 42.05 2.29
3121 3162 6.774673 TCCATTGTGAAACCAGATTACTGTA 58.225 36.000 0.00 0.00 42.05 2.74
3122 3163 5.630121 TCCATTGTGAAACCAGATTACTGT 58.370 37.500 0.00 0.00 42.05 3.55
3123 3164 6.764308 ATCCATTGTGAAACCAGATTACTG 57.236 37.500 0.00 0.00 43.12 2.74
3124 3165 7.161773 CAATCCATTGTGAAACCAGATTACT 57.838 36.000 0.00 0.00 34.36 2.24
3138 3179 9.548109 AGGGACTTTGTGAGTACAATCCATTGT 62.548 40.741 9.80 9.80 45.75 2.71
3139 3180 5.106157 GGGACTTTGTGAGTACAATCCATTG 60.106 44.000 12.33 0.00 45.56 2.82
3140 3181 5.010282 GGGACTTTGTGAGTACAATCCATT 58.990 41.667 12.33 0.00 45.56 3.16
3141 3182 4.289672 AGGGACTTTGTGAGTACAATCCAT 59.710 41.667 12.33 5.17 45.56 3.41
3142 3183 3.650942 AGGGACTTTGTGAGTACAATCCA 59.349 43.478 12.33 0.00 45.56 3.41
3143 3184 4.254492 GAGGGACTTTGTGAGTACAATCC 58.746 47.826 0.00 0.00 45.56 3.01
3144 3185 3.927142 CGAGGGACTTTGTGAGTACAATC 59.073 47.826 0.00 0.00 45.56 2.67
3145 3186 3.576982 TCGAGGGACTTTGTGAGTACAAT 59.423 43.478 0.00 0.00 45.56 2.71
3146 3187 2.960384 TCGAGGGACTTTGTGAGTACAA 59.040 45.455 0.00 0.00 41.37 2.41
3147 3188 2.589720 TCGAGGGACTTTGTGAGTACA 58.410 47.619 0.00 0.00 41.37 2.90
3148 3189 3.655276 TTCGAGGGACTTTGTGAGTAC 57.345 47.619 0.00 0.00 41.55 2.73
3149 3190 7.341256 ACTTATATTCGAGGGACTTTGTGAGTA 59.659 37.037 0.00 0.00 41.55 2.59
3150 3191 6.154706 ACTTATATTCGAGGGACTTTGTGAGT 59.845 38.462 0.00 0.00 41.55 3.41
3151 3192 6.477033 CACTTATATTCGAGGGACTTTGTGAG 59.523 42.308 0.00 0.00 41.55 3.51
3152 3193 6.338146 CACTTATATTCGAGGGACTTTGTGA 58.662 40.000 0.00 0.00 41.55 3.58
3153 3194 5.523916 CCACTTATATTCGAGGGACTTTGTG 59.476 44.000 0.00 0.00 41.55 3.33
3154 3195 5.671493 CCACTTATATTCGAGGGACTTTGT 58.329 41.667 0.00 0.00 41.55 2.83
3155 3196 4.511826 GCCACTTATATTCGAGGGACTTTG 59.488 45.833 0.00 0.00 41.55 2.77
3156 3197 4.704965 GCCACTTATATTCGAGGGACTTT 58.295 43.478 0.00 0.00 41.55 2.66
3157 3198 3.243771 CGCCACTTATATTCGAGGGACTT 60.244 47.826 0.00 0.00 41.55 3.01
3159 3200 2.673833 CGCCACTTATATTCGAGGGAC 58.326 52.381 0.00 0.00 0.00 4.46
3160 3201 1.000506 GCGCCACTTATATTCGAGGGA 59.999 52.381 0.00 0.00 0.00 4.20
3161 3202 1.429463 GCGCCACTTATATTCGAGGG 58.571 55.000 0.00 0.00 0.00 4.30
3162 3203 1.270094 TGGCGCCACTTATATTCGAGG 60.270 52.381 29.03 0.00 0.00 4.63
3163 3204 1.792949 GTGGCGCCACTTATATTCGAG 59.207 52.381 44.62 0.00 43.12 4.04
3164 3205 1.860676 GTGGCGCCACTTATATTCGA 58.139 50.000 44.62 11.72 43.12 3.71
3174 3215 1.081242 CACATTGAAGTGGCGCCAC 60.081 57.895 45.27 45.27 46.50 5.01
3175 3216 3.353600 CACATTGAAGTGGCGCCA 58.646 55.556 29.03 29.03 35.88 5.69
3181 3222 4.330250 AGAAGGATGACCACATTGAAGTG 58.670 43.478 0.00 0.00 36.82 3.16
3182 3223 4.647564 AGAAGGATGACCACATTGAAGT 57.352 40.909 0.00 0.00 36.82 3.01
3183 3224 5.491070 TGTAGAAGGATGACCACATTGAAG 58.509 41.667 0.00 0.00 36.82 3.02
3184 3225 5.497464 TGTAGAAGGATGACCACATTGAA 57.503 39.130 0.00 0.00 36.82 2.69
3185 3226 5.189539 TGATGTAGAAGGATGACCACATTGA 59.810 40.000 0.00 0.00 36.82 2.57
3186 3227 5.295292 GTGATGTAGAAGGATGACCACATTG 59.705 44.000 0.00 0.00 36.82 2.82
3187 3228 5.190528 AGTGATGTAGAAGGATGACCACATT 59.809 40.000 0.00 0.00 36.82 2.71
3188 3229 4.718774 AGTGATGTAGAAGGATGACCACAT 59.281 41.667 0.00 0.00 39.67 3.21
3189 3230 4.096681 AGTGATGTAGAAGGATGACCACA 58.903 43.478 0.00 0.00 38.94 4.17
3190 3231 4.744795 AGTGATGTAGAAGGATGACCAC 57.255 45.455 0.00 0.00 38.94 4.16
3191 3232 4.080919 CCAAGTGATGTAGAAGGATGACCA 60.081 45.833 0.00 0.00 38.94 4.02
3192 3233 4.446371 CCAAGTGATGTAGAAGGATGACC 58.554 47.826 0.00 0.00 0.00 4.02
3193 3234 4.162320 TCCCAAGTGATGTAGAAGGATGAC 59.838 45.833 0.00 0.00 0.00 3.06
3194 3235 4.361783 TCCCAAGTGATGTAGAAGGATGA 58.638 43.478 0.00 0.00 0.00 2.92
3195 3236 4.444022 CCTCCCAAGTGATGTAGAAGGATG 60.444 50.000 0.00 0.00 0.00 3.51
3196 3237 3.713764 CCTCCCAAGTGATGTAGAAGGAT 59.286 47.826 0.00 0.00 0.00 3.24
3197 3238 3.107601 CCTCCCAAGTGATGTAGAAGGA 58.892 50.000 0.00 0.00 0.00 3.36
3198 3239 2.171448 CCCTCCCAAGTGATGTAGAAGG 59.829 54.545 0.00 0.00 0.00 3.46
3199 3240 2.171448 CCCCTCCCAAGTGATGTAGAAG 59.829 54.545 0.00 0.00 0.00 2.85
3200 3241 2.196595 CCCCTCCCAAGTGATGTAGAA 58.803 52.381 0.00 0.00 0.00 2.10
3201 3242 1.879575 CCCCTCCCAAGTGATGTAGA 58.120 55.000 0.00 0.00 0.00 2.59
3202 3243 0.181350 GCCCCTCCCAAGTGATGTAG 59.819 60.000 0.00 0.00 0.00 2.74
3203 3244 0.253160 AGCCCCTCCCAAGTGATGTA 60.253 55.000 0.00 0.00 0.00 2.29
3204 3245 1.542375 AGCCCCTCCCAAGTGATGT 60.542 57.895 0.00 0.00 0.00 3.06
3232 3273 3.797039 TGATGCTGCATGTAGAAGGTAC 58.203 45.455 21.53 1.71 0.00 3.34
3241 3282 1.749063 CAGGATGTTGATGCTGCATGT 59.251 47.619 21.53 0.00 40.68 3.21
3310 3352 0.179174 CAAATCTAAACGTGGCCGGC 60.179 55.000 21.18 21.18 38.78 6.13
3382 3428 2.190841 CGTTGAGGTTGGGCGGTTT 61.191 57.895 0.00 0.00 0.00 3.27
3402 3448 1.413445 TCAGCCTTGCAAAAGCACATT 59.587 42.857 19.92 0.41 0.00 2.71
3463 3509 4.711846 GCCCCTCCAAACTGAGATTTATTT 59.288 41.667 0.00 0.00 34.11 1.40
3515 3561 2.273538 ATGTCGAGGCGTAGGACTAT 57.726 50.000 10.32 2.32 0.00 2.12
3541 3587 0.536460 CGGAGAGGGCTCTAGACTCC 60.536 65.000 13.84 13.84 40.61 3.85
3545 3591 0.538516 GCATCGGAGAGGGCTCTAGA 60.539 60.000 0.00 0.00 43.63 2.43
3559 3605 1.212616 GAAGATGGAACTCCGCATCG 58.787 55.000 0.00 0.00 39.43 3.84
3642 3689 1.407851 GCAGCCATGTGATTCTGGAGA 60.408 52.381 0.00 0.00 34.24 3.71
3692 3739 3.005897 GTCCTAGCATTGATCTTCGCCTA 59.994 47.826 0.00 0.00 0.00 3.93
3714 3761 3.236816 GTGTGGATGAATGCTTTTCGTG 58.763 45.455 0.25 0.00 0.00 4.35
3910 3957 0.534877 TGATTGCACGCCACACTTCT 60.535 50.000 0.00 0.00 0.00 2.85
3997 4044 1.317613 TGTCGCCTTTGATTGTTGCT 58.682 45.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.