Multiple sequence alignment - TraesCS7A01G362000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G362000 chr7A 100.000 6320 0 0 1 6320 536521816 536515497 0.000000e+00 11671.0
1 TraesCS7A01G362000 chr7A 89.247 186 19 1 5 189 685404786 685404601 1.370000e-56 231.0
2 TraesCS7A01G362000 chr7A 84.028 144 23 0 3324 3467 193560953 193560810 8.540000e-29 139.0
3 TraesCS7A01G362000 chr7B 91.774 3635 208 44 346 3927 487815454 487811858 0.000000e+00 4972.0
4 TraesCS7A01G362000 chr7B 92.167 1915 88 31 3924 5814 487811777 487809901 0.000000e+00 2649.0
5 TraesCS7A01G362000 chr7B 88.626 422 15 19 5913 6320 487809767 487809365 3.430000e-132 483.0
6 TraesCS7A01G362000 chr7B 90.476 105 4 3 5762 5862 152466771 152466669 3.970000e-27 134.0
7 TraesCS7A01G362000 chr7D 92.227 3165 149 36 688 3825 463877929 463881023 0.000000e+00 4392.0
8 TraesCS7A01G362000 chr7D 94.718 2007 58 15 3804 5778 463883607 463885597 0.000000e+00 3075.0
9 TraesCS7A01G362000 chr7D 93.947 413 19 4 5914 6320 463885832 463886244 2.500000e-173 619.0
10 TraesCS7A01G362000 chr7D 86.296 270 17 16 356 614 463877381 463877641 6.240000e-70 276.0
11 TraesCS7A01G362000 chr2A 84.264 591 75 14 3084 3663 753810623 753811206 1.540000e-155 560.0
12 TraesCS7A01G362000 chr2A 89.908 327 30 2 2754 3078 753798041 753798366 9.800000e-113 418.0
13 TraesCS7A01G362000 chr2A 89.529 191 17 3 4 191 676733900 676733710 8.190000e-59 239.0
14 TraesCS7A01G362000 chr2A 90.741 108 4 3 5756 5859 334889477 334889582 8.540000e-29 139.0
15 TraesCS7A01G362000 chr3B 91.192 193 15 2 1 191 592595692 592595884 1.750000e-65 261.0
16 TraesCS7A01G362000 chr3B 84.028 144 23 0 3324 3467 449810889 449810746 8.540000e-29 139.0
17 TraesCS7A01G362000 chr3B 96.875 32 0 1 5881 5911 68909311 68909342 1.100000e-02 52.8
18 TraesCS7A01G362000 chr2D 91.579 190 14 2 1 188 613427238 613427427 1.750000e-65 261.0
19 TraesCS7A01G362000 chr3A 90.722 194 15 3 1 191 690974772 690974965 8.130000e-64 255.0
20 TraesCS7A01G362000 chr4A 90.957 188 15 2 4 189 153665566 153665379 1.050000e-62 252.0
21 TraesCS7A01G362000 chr6D 90.909 187 15 2 4 188 28048813 28048627 3.780000e-62 250.0
22 TraesCS7A01G362000 chr6D 84.242 165 24 2 3304 3467 161975041 161975204 6.560000e-35 159.0
23 TraesCS7A01G362000 chr6D 87.597 129 16 0 2450 2578 161973750 161973878 3.950000e-32 150.0
24 TraesCS7A01G362000 chr5D 89.474 190 18 2 4 191 351153030 351152841 8.190000e-59 239.0
25 TraesCS7A01G362000 chr3D 89.062 192 17 4 4 191 113025620 113025429 1.060000e-57 235.0
26 TraesCS7A01G362000 chr3D 84.028 144 23 0 3324 3467 351126158 351126015 8.540000e-29 139.0
27 TraesCS7A01G362000 chr6B 87.413 143 18 0 3325 3467 300720899 300720757 1.410000e-36 165.0
28 TraesCS7A01G362000 chr6B 87.121 132 17 0 2453 2584 300722204 300722073 3.950000e-32 150.0
29 TraesCS7A01G362000 chr6B 91.262 103 3 3 5764 5862 27936385 27936285 1.110000e-27 135.0
30 TraesCS7A01G362000 chr6A 85.443 158 23 0 3310 3467 221345770 221345927 1.410000e-36 165.0
31 TraesCS7A01G362000 chr6A 87.597 129 16 0 2450 2578 221344472 221344600 3.950000e-32 150.0
32 TraesCS7A01G362000 chr6A 87.395 119 7 5 5746 5859 568050354 568050469 5.140000e-26 130.0
33 TraesCS7A01G362000 chrUn 87.121 132 17 0 2453 2584 212095079 212094948 3.950000e-32 150.0
34 TraesCS7A01G362000 chr1A 92.079 101 2 3 5763 5859 107775164 107775262 3.070000e-28 137.0
35 TraesCS7A01G362000 chr2B 89.908 109 5 3 5758 5862 101058497 101058391 1.110000e-27 135.0
36 TraesCS7A01G362000 chr5B 91.176 102 3 3 5765 5862 506957160 506957061 3.970000e-27 134.0
37 TraesCS7A01G362000 chr1B 89.189 111 6 3 5756 5862 664059337 664059229 3.970000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G362000 chr7A 536515497 536521816 6319 True 11671.000000 11671 100.000000 1 6320 1 chr7A.!!$R2 6319
1 TraesCS7A01G362000 chr7B 487809365 487815454 6089 True 2701.333333 4972 90.855667 346 6320 3 chr7B.!!$R2 5974
2 TraesCS7A01G362000 chr7D 463877381 463886244 8863 False 2090.500000 4392 91.797000 356 6320 4 chr7D.!!$F1 5964
3 TraesCS7A01G362000 chr2A 753810623 753811206 583 False 560.000000 560 84.264000 3084 3663 1 chr2A.!!$F3 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 345 0.032540 CCTGAAAAGGCAAGCCACAC 59.967 55.000 14.40 2.60 38.92 3.82 F
347 348 0.032540 GAAAAGGCAAGCCACACAGG 59.967 55.000 14.40 0.00 38.92 4.00 F
350 351 0.178953 AAGGCAAGCCACACAGGAAT 60.179 50.000 14.40 0.00 41.22 3.01 F
1188 1438 0.386352 CCGTCAGCACTTGCATTGTG 60.386 55.000 13.87 13.87 45.16 3.33 F
1547 1806 0.690762 ACGGCATAGGGTCAAAGTGT 59.309 50.000 0.00 0.00 0.00 3.55 F
2983 3248 0.814457 GCAACCGTGGCCAAATCATA 59.186 50.000 7.24 0.00 0.00 2.15 F
3418 3695 1.197721 GAATGTGGGAAGCACGTTCTG 59.802 52.381 1.88 0.00 42.28 3.02 F
3966 6945 2.063156 TAATTTTGCACTTGCTGCCG 57.937 45.000 2.33 0.00 46.51 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2319 2582 1.134640 TGTCCACGTTATCCCATTCCG 60.135 52.381 0.00 0.0 0.00 4.30 R
2391 2654 9.390795 GCAGCTTTCATATTCATATACAAACAG 57.609 33.333 0.00 0.0 0.00 3.16 R
2431 2695 5.817296 CACAGAAGCAGCATACCATAAGTAA 59.183 40.000 0.00 0.0 33.70 2.24 R
2964 3229 0.814457 TATGATTTGGCCACGGTTGC 59.186 50.000 3.88 0.0 0.00 4.17 R
3526 3803 2.096248 AGTACTCCAAGGAAGAGCGAG 58.904 52.381 0.00 0.0 34.56 5.03 R
4176 7155 0.037590 TTGCCGGTGCTACAAGGAAT 59.962 50.000 1.90 0.0 38.71 3.01 R
4264 7254 2.106338 TCAGGACTCAGCAAAATGGTCA 59.894 45.455 0.00 0.0 0.00 4.02 R
5871 8943 0.451783 CGGCTTGGGCATGTTTCTAC 59.548 55.000 0.00 0.0 40.87 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.115414 GGAATGGAATCCTATTTCTATGGAGG 58.885 42.308 0.00 0.00 36.50 4.30
31 32 7.037297 GGAATGGAATCCTATTTCTATGGAGGA 60.037 40.741 0.00 0.00 42.22 3.71
32 33 7.895144 ATGGAATCCTATTTCTATGGAGGAA 57.105 36.000 0.00 0.00 41.37 3.36
33 34 7.705912 TGGAATCCTATTTCTATGGAGGAAA 57.294 36.000 0.00 0.00 41.37 3.13
34 35 8.293027 TGGAATCCTATTTCTATGGAGGAAAT 57.707 34.615 0.00 0.00 41.37 2.17
35 36 8.386264 TGGAATCCTATTTCTATGGAGGAAATC 58.614 37.037 0.00 0.00 41.37 2.17
36 37 8.610369 GGAATCCTATTTCTATGGAGGAAATCT 58.390 37.037 5.17 0.00 41.37 2.40
54 55 8.800370 GGAAATCTTCCTATCCTCCATATTTC 57.200 38.462 0.00 0.00 46.57 2.17
55 56 8.386264 GGAAATCTTCCTATCCTCCATATTTCA 58.614 37.037 0.00 0.00 46.57 2.69
56 57 9.972106 GAAATCTTCCTATCCTCCATATTTCAT 57.028 33.333 0.00 0.00 33.27 2.57
59 60 8.615360 TCTTCCTATCCTCCATATTTCATAGG 57.385 38.462 0.00 0.00 35.93 2.57
60 61 8.409825 TCTTCCTATCCTCCATATTTCATAGGA 58.590 37.037 2.01 2.01 39.98 2.94
61 62 8.989045 TTCCTATCCTCCATATTTCATAGGAA 57.011 34.615 12.28 12.28 44.92 3.36
62 63 8.989045 TCCTATCCTCCATATTTCATAGGAAA 57.011 34.615 4.85 4.85 46.36 3.13
63 64 9.405369 TCCTATCCTCCATATTTCATAGGAAAA 57.595 33.333 6.65 0.00 45.52 2.29
117 118 8.868522 AATCCTATGAAGTGAATCAAAGAACA 57.131 30.769 0.00 0.00 32.06 3.18
118 119 9.471702 AATCCTATGAAGTGAATCAAAGAACAT 57.528 29.630 0.00 0.00 32.06 2.71
119 120 8.498054 TCCTATGAAGTGAATCAAAGAACATC 57.502 34.615 0.00 0.00 32.06 3.06
120 121 8.324306 TCCTATGAAGTGAATCAAAGAACATCT 58.676 33.333 0.00 0.00 32.06 2.90
121 122 8.610896 CCTATGAAGTGAATCAAAGAACATCTC 58.389 37.037 0.00 0.00 32.06 2.75
122 123 6.808008 TGAAGTGAATCAAAGAACATCTCC 57.192 37.500 0.00 0.00 0.00 3.71
123 124 6.537355 TGAAGTGAATCAAAGAACATCTCCT 58.463 36.000 0.00 0.00 0.00 3.69
124 125 7.000472 TGAAGTGAATCAAAGAACATCTCCTT 59.000 34.615 0.00 0.00 0.00 3.36
125 126 7.503566 TGAAGTGAATCAAAGAACATCTCCTTT 59.496 33.333 0.00 0.00 33.29 3.11
126 127 7.446001 AGTGAATCAAAGAACATCTCCTTTC 57.554 36.000 0.00 0.00 30.89 2.62
127 128 6.432472 AGTGAATCAAAGAACATCTCCTTTCC 59.568 38.462 0.00 0.00 30.89 3.13
128 129 6.432472 GTGAATCAAAGAACATCTCCTTTCCT 59.568 38.462 0.00 0.00 30.89 3.36
129 130 7.607991 GTGAATCAAAGAACATCTCCTTTCCTA 59.392 37.037 0.00 0.00 30.89 2.94
130 131 8.331740 TGAATCAAAGAACATCTCCTTTCCTAT 58.668 33.333 0.00 0.00 30.89 2.57
131 132 9.183368 GAATCAAAGAACATCTCCTTTCCTATT 57.817 33.333 0.00 0.00 30.89 1.73
132 133 9.539194 AATCAAAGAACATCTCCTTTCCTATTT 57.461 29.630 0.00 0.00 30.89 1.40
133 134 8.940397 TCAAAGAACATCTCCTTTCCTATTTT 57.060 30.769 0.00 0.00 30.89 1.82
134 135 9.367160 TCAAAGAACATCTCCTTTCCTATTTTT 57.633 29.630 0.00 0.00 30.89 1.94
138 139 9.674068 AGAACATCTCCTTTCCTATTTTTACTC 57.326 33.333 0.00 0.00 0.00 2.59
139 140 8.494016 AACATCTCCTTTCCTATTTTTACTCG 57.506 34.615 0.00 0.00 0.00 4.18
140 141 7.621796 ACATCTCCTTTCCTATTTTTACTCGT 58.378 34.615 0.00 0.00 0.00 4.18
141 142 8.755977 ACATCTCCTTTCCTATTTTTACTCGTA 58.244 33.333 0.00 0.00 0.00 3.43
142 143 9.250624 CATCTCCTTTCCTATTTTTACTCGTAG 57.749 37.037 0.00 0.00 0.00 3.51
143 144 7.779073 TCTCCTTTCCTATTTTTACTCGTAGG 58.221 38.462 0.00 0.00 35.99 3.18
144 145 7.616935 TCTCCTTTCCTATTTTTACTCGTAGGA 59.383 37.037 0.00 0.00 40.59 2.94
145 146 8.315220 TCCTTTCCTATTTTTACTCGTAGGAT 57.685 34.615 1.22 0.00 41.57 3.24
146 147 8.765517 TCCTTTCCTATTTTTACTCGTAGGATT 58.234 33.333 1.22 0.00 41.57 3.01
147 148 9.392259 CCTTTCCTATTTTTACTCGTAGGATTT 57.608 33.333 1.22 0.00 41.57 2.17
149 150 9.947433 TTTCCTATTTTTACTCGTAGGATTTGA 57.053 29.630 1.22 0.00 41.57 2.69
150 151 9.595823 TTCCTATTTTTACTCGTAGGATTTGAG 57.404 33.333 1.22 0.00 41.57 3.02
151 152 8.974238 TCCTATTTTTACTCGTAGGATTTGAGA 58.026 33.333 0.00 0.00 38.17 3.27
152 153 9.765795 CCTATTTTTACTCGTAGGATTTGAGAT 57.234 33.333 0.00 0.00 36.62 2.75
154 155 6.903883 TTTTACTCGTAGGATTTGAGATGC 57.096 37.500 0.00 0.00 33.93 3.91
155 156 5.592104 TTACTCGTAGGATTTGAGATGCA 57.408 39.130 0.00 0.00 33.93 3.96
156 157 4.679373 ACTCGTAGGATTTGAGATGCAT 57.321 40.909 0.00 0.00 33.93 3.96
157 158 4.375272 ACTCGTAGGATTTGAGATGCATG 58.625 43.478 2.46 0.00 33.93 4.06
158 159 4.141846 ACTCGTAGGATTTGAGATGCATGT 60.142 41.667 2.46 0.00 33.93 3.21
159 160 5.069119 ACTCGTAGGATTTGAGATGCATGTA 59.931 40.000 2.46 0.00 33.93 2.29
160 161 6.101650 TCGTAGGATTTGAGATGCATGTAT 57.898 37.500 2.46 0.00 0.00 2.29
161 162 6.159293 TCGTAGGATTTGAGATGCATGTATC 58.841 40.000 15.28 15.28 0.00 2.24
162 163 6.015095 TCGTAGGATTTGAGATGCATGTATCT 60.015 38.462 24.25 24.25 40.02 1.98
175 176 9.961264 AGATGCATGTATCTCATTTTCTATGAT 57.039 29.630 19.38 0.00 31.97 2.45
179 180 9.837525 GCATGTATCTCATTTTCTATGATTTCC 57.162 33.333 0.00 0.00 34.09 3.13
185 186 9.972106 ATCTCATTTTCTATGATTTCCCTATCC 57.028 33.333 0.00 0.00 0.00 2.59
186 187 9.175577 TCTCATTTTCTATGATTTCCCTATCCT 57.824 33.333 0.00 0.00 0.00 3.24
192 193 9.621239 TTTCTATGATTTCCCTATCCTATGAGT 57.379 33.333 0.00 0.00 0.00 3.41
198 199 9.170890 TGATTTCCCTATCCTATGAGTAAATGT 57.829 33.333 0.00 0.00 0.00 2.71
199 200 9.442047 GATTTCCCTATCCTATGAGTAAATGTG 57.558 37.037 0.00 0.00 0.00 3.21
200 201 8.561536 TTTCCCTATCCTATGAGTAAATGTGA 57.438 34.615 0.00 0.00 0.00 3.58
201 202 8.561536 TTCCCTATCCTATGAGTAAATGTGAA 57.438 34.615 0.00 0.00 0.00 3.18
202 203 8.195165 TCCCTATCCTATGAGTAAATGTGAAG 57.805 38.462 0.00 0.00 0.00 3.02
203 204 7.235606 TCCCTATCCTATGAGTAAATGTGAAGG 59.764 40.741 0.00 0.00 0.00 3.46
204 205 7.235606 CCCTATCCTATGAGTAAATGTGAAGGA 59.764 40.741 0.00 0.00 36.39 3.36
205 206 8.820831 CCTATCCTATGAGTAAATGTGAAGGAT 58.179 37.037 5.89 5.89 43.32 3.24
209 210 9.379770 TCCTATGAGTAAATGTGAAGGATATGA 57.620 33.333 0.00 0.00 0.00 2.15
241 242 8.940397 TTTTCATAGAAATAGGATCCCATTCC 57.060 34.615 8.55 0.00 35.90 3.01
243 244 7.895144 TCATAGAAATAGGATCCCATTCCTT 57.105 36.000 8.55 0.00 43.88 3.36
244 245 7.922382 TCATAGAAATAGGATCCCATTCCTTC 58.078 38.462 8.55 1.51 43.88 3.46
245 246 7.517254 TCATAGAAATAGGATCCCATTCCTTCA 59.483 37.037 8.55 0.00 43.88 3.02
246 247 6.596869 AGAAATAGGATCCCATTCCTTCAA 57.403 37.500 8.55 0.00 43.88 2.69
247 248 6.985225 AGAAATAGGATCCCATTCCTTCAAA 58.015 36.000 8.55 0.00 43.88 2.69
248 249 7.599170 AGAAATAGGATCCCATTCCTTCAAAT 58.401 34.615 8.55 0.00 43.88 2.32
249 250 7.727634 AGAAATAGGATCCCATTCCTTCAAATC 59.272 37.037 8.55 0.00 43.88 2.17
250 251 4.886755 AGGATCCCATTCCTTCAAATCA 57.113 40.909 8.55 0.00 43.88 2.57
251 252 5.211078 AGGATCCCATTCCTTCAAATCAA 57.789 39.130 8.55 0.00 43.88 2.57
252 253 5.592795 AGGATCCCATTCCTTCAAATCAAA 58.407 37.500 8.55 0.00 43.88 2.69
253 254 5.659971 AGGATCCCATTCCTTCAAATCAAAG 59.340 40.000 8.55 0.00 43.88 2.77
254 255 5.163374 GGATCCCATTCCTTCAAATCAAAGG 60.163 44.000 0.00 0.00 43.94 3.11
263 264 7.416964 TCCTTCAAATCAAAGGACTCAAAAA 57.583 32.000 0.51 0.00 45.74 1.94
325 326 5.881777 AAAATCTTCCGAACTAAAGAGGC 57.118 39.130 0.00 0.00 35.13 4.70
326 327 3.545366 ATCTTCCGAACTAAAGAGGCC 57.455 47.619 0.00 0.00 35.13 5.19
327 328 2.537143 TCTTCCGAACTAAAGAGGCCT 58.463 47.619 3.86 3.86 0.00 5.19
328 329 2.233922 TCTTCCGAACTAAAGAGGCCTG 59.766 50.000 12.00 0.00 0.00 4.85
329 330 1.933021 TCCGAACTAAAGAGGCCTGA 58.067 50.000 12.00 0.00 0.00 3.86
330 331 2.253610 TCCGAACTAAAGAGGCCTGAA 58.746 47.619 12.00 0.00 0.00 3.02
331 332 2.635915 TCCGAACTAAAGAGGCCTGAAA 59.364 45.455 12.00 0.00 0.00 2.69
332 333 3.071892 TCCGAACTAAAGAGGCCTGAAAA 59.928 43.478 12.00 0.00 0.00 2.29
333 334 3.437049 CCGAACTAAAGAGGCCTGAAAAG 59.563 47.826 12.00 4.95 0.00 2.27
334 335 3.437049 CGAACTAAAGAGGCCTGAAAAGG 59.563 47.826 12.00 0.00 0.00 3.11
343 344 2.428834 CCTGAAAAGGCAAGCCACA 58.571 52.632 14.40 6.94 38.92 4.17
344 345 0.032540 CCTGAAAAGGCAAGCCACAC 59.967 55.000 14.40 2.60 38.92 3.82
345 346 0.746063 CTGAAAAGGCAAGCCACACA 59.254 50.000 14.40 6.93 38.92 3.72
346 347 0.746063 TGAAAAGGCAAGCCACACAG 59.254 50.000 14.40 0.00 38.92 3.66
347 348 0.032540 GAAAAGGCAAGCCACACAGG 59.967 55.000 14.40 0.00 38.92 4.00
348 349 0.396974 AAAAGGCAAGCCACACAGGA 60.397 50.000 14.40 0.00 41.22 3.86
349 350 0.396974 AAAGGCAAGCCACACAGGAA 60.397 50.000 14.40 0.00 41.22 3.36
350 351 0.178953 AAGGCAAGCCACACAGGAAT 60.179 50.000 14.40 0.00 41.22 3.01
351 352 0.698238 AGGCAAGCCACACAGGAATA 59.302 50.000 14.40 0.00 41.22 1.75
352 353 0.811281 GGCAAGCCACACAGGAATAC 59.189 55.000 6.14 0.00 41.22 1.89
353 354 1.533625 GCAAGCCACACAGGAATACA 58.466 50.000 0.00 0.00 41.22 2.29
354 355 1.470098 GCAAGCCACACAGGAATACAG 59.530 52.381 0.00 0.00 41.22 2.74
376 381 2.622903 TTAGACGCGGGGCTGATTCG 62.623 60.000 19.71 0.00 0.00 3.34
387 392 1.203928 GCTGATTCGTGTCTGATCCG 58.796 55.000 0.00 0.00 0.00 4.18
405 410 2.757056 GGTCACGGGCCGTATTTGC 61.757 63.158 33.65 18.53 38.32 3.68
412 417 1.134175 CGGGCCGTATTTGCAAATTCT 59.866 47.619 28.45 9.46 0.00 2.40
426 432 3.696051 GCAAATTCTGTATTCTGCAGGGA 59.304 43.478 15.13 3.26 34.89 4.20
428 434 4.574674 AATTCTGTATTCTGCAGGGACA 57.425 40.909 15.13 14.02 34.89 4.02
470 481 1.812571 CTCCCTCAACGATTGGGTTTG 59.187 52.381 0.00 0.00 41.58 2.93
485 496 3.582208 TGGGTTTGCCTGCATTAATTTCT 59.418 39.130 0.00 0.00 34.45 2.52
489 506 2.023673 TGCCTGCATTAATTTCTCCCG 58.976 47.619 0.00 0.00 0.00 5.14
492 509 3.545703 CCTGCATTAATTTCTCCCGTCT 58.454 45.455 0.00 0.00 0.00 4.18
493 510 3.313526 CCTGCATTAATTTCTCCCGTCTG 59.686 47.826 0.00 0.00 0.00 3.51
495 512 2.033424 GCATTAATTTCTCCCGTCTGCC 59.967 50.000 0.00 0.00 0.00 4.85
550 567 1.742880 CACGATCCACCAGCACCAG 60.743 63.158 0.00 0.00 0.00 4.00
552 569 2.352422 GATCCACCAGCACCAGCA 59.648 61.111 0.00 0.00 45.49 4.41
555 572 4.275508 CCACCAGCACCAGCACCT 62.276 66.667 0.00 0.00 45.49 4.00
556 573 2.670934 CACCAGCACCAGCACCTC 60.671 66.667 0.00 0.00 45.49 3.85
557 574 3.958860 ACCAGCACCAGCACCTCC 61.959 66.667 0.00 0.00 45.49 4.30
558 575 4.729918 CCAGCACCAGCACCTCCC 62.730 72.222 0.00 0.00 45.49 4.30
559 576 4.729918 CAGCACCAGCACCTCCCC 62.730 72.222 0.00 0.00 45.49 4.81
562 579 3.721706 CACCAGCACCTCCCCCTC 61.722 72.222 0.00 0.00 0.00 4.30
596 613 2.758327 CGTCTCCCACCGATCCCA 60.758 66.667 0.00 0.00 0.00 4.37
606 623 2.186903 CGATCCCAACCCGAGGTG 59.813 66.667 0.00 0.00 35.34 4.00
628 645 2.837291 CCCTCCCCTGCTCTCGAG 60.837 72.222 5.93 5.93 0.00 4.04
864 1109 2.806856 CGCGATTGGCAGACAGCTC 61.807 63.158 0.00 0.00 44.79 4.09
914 1163 3.487202 GCGATCCGCGTTGCTTGA 61.487 61.111 4.92 0.00 44.55 3.02
916 1165 1.225745 CGATCCGCGTTGCTTGAAC 60.226 57.895 4.92 0.00 34.64 3.18
951 1200 4.904116 TCGTTTTGTGTGTTGATTCTGAC 58.096 39.130 0.00 0.00 0.00 3.51
961 1210 3.083600 GATTCTGACGGCGCGGTTG 62.084 63.158 22.17 16.92 0.00 3.77
1005 1254 2.973082 GTTGGGTTCAGCATGGGC 59.027 61.111 0.00 0.00 41.61 5.36
1007 1256 3.903281 TTGGGTTCAGCATGGGCCC 62.903 63.158 17.59 17.59 45.99 5.80
1032 1281 4.467084 GAGGGCGCCGACATGGAA 62.467 66.667 22.54 0.00 42.00 3.53
1064 1313 1.271102 GGAGATCGGCATAGGTGAGTC 59.729 57.143 0.00 0.00 0.00 3.36
1065 1314 0.955178 AGATCGGCATAGGTGAGTCG 59.045 55.000 0.00 0.00 0.00 4.18
1067 1316 0.669077 ATCGGCATAGGTGAGTCGTC 59.331 55.000 0.00 0.00 0.00 4.20
1074 1323 1.596603 TAGGTGAGTCGTCGAACACA 58.403 50.000 24.67 12.35 35.33 3.72
1081 1330 1.136029 AGTCGTCGAACACATCTCGTC 60.136 52.381 0.00 0.00 37.56 4.20
1090 1340 2.717390 ACACATCTCGTCTAGTGCTCT 58.283 47.619 0.00 0.00 35.47 4.09
1093 1343 4.101942 CACATCTCGTCTAGTGCTCTTTC 58.898 47.826 0.00 0.00 0.00 2.62
1123 1373 2.980233 GTGTGCCCAGCAGTGGTC 60.980 66.667 0.00 0.00 43.23 4.02
1188 1438 0.386352 CCGTCAGCACTTGCATTGTG 60.386 55.000 13.87 13.87 45.16 3.33
1219 1469 5.649831 GCTTTGGATAGGAAGTTTGAGATGT 59.350 40.000 0.00 0.00 0.00 3.06
1220 1470 6.183360 GCTTTGGATAGGAAGTTTGAGATGTC 60.183 42.308 0.00 0.00 0.00 3.06
1227 1477 4.912528 GAAGTTTGAGATGTCGACTTCC 57.087 45.455 23.49 16.58 39.86 3.46
1228 1478 2.947852 AGTTTGAGATGTCGACTTCCG 58.052 47.619 23.49 0.00 40.25 4.30
1239 1489 7.137426 AGATGTCGACTTCCGTATATGTAAAC 58.863 38.462 23.49 0.00 39.75 2.01
1326 1576 4.142381 GCTGGAAATCCATAGTGTTCCAAC 60.142 45.833 1.93 0.00 46.68 3.77
1383 1633 4.329528 TGCTTTTTGTAGCTTTGCAGTTTG 59.670 37.500 0.00 0.00 41.76 2.93
1433 1692 6.350445 CCTTGCACTATGCCAATTCTTTTAGT 60.350 38.462 0.00 0.00 44.23 2.24
1437 1696 7.065803 TGCACTATGCCAATTCTTTTAGTCTAC 59.934 37.037 0.00 0.00 44.23 2.59
1547 1806 0.690762 ACGGCATAGGGTCAAAGTGT 59.309 50.000 0.00 0.00 0.00 3.55
1891 2151 2.887152 AGTTGATGGTGAAAAGGCTGTC 59.113 45.455 0.00 0.00 0.00 3.51
1973 2235 9.743057 CTAGTCTCTTTCTGAAGTAATACCATG 57.257 37.037 0.00 0.00 34.41 3.66
2041 2303 4.184079 TCGAGTAAACTTTAGACTGCCC 57.816 45.455 0.00 0.00 0.00 5.36
2064 2326 7.667557 CCCTTATCTATGTTTATCTGAACGGA 58.332 38.462 0.00 0.00 32.18 4.69
2068 2330 7.969536 ATCTATGTTTATCTGAACGGATTGG 57.030 36.000 1.38 0.00 32.18 3.16
2069 2331 4.900635 ATGTTTATCTGAACGGATTGGC 57.099 40.909 1.38 0.00 32.18 4.52
2072 2334 3.627395 TTATCTGAACGGATTGGCTGT 57.373 42.857 1.38 0.00 37.85 4.40
2176 2438 4.592485 TCCACAACTCTCTTCTTGTCTC 57.408 45.455 0.00 0.00 0.00 3.36
2181 2443 7.015682 TCCACAACTCTCTTCTTGTCTCTTTAT 59.984 37.037 0.00 0.00 0.00 1.40
2227 2490 2.037121 GCTTTTGGTTGGCCACTGTTAT 59.963 45.455 3.88 0.00 46.01 1.89
2228 2491 3.257127 GCTTTTGGTTGGCCACTGTTATA 59.743 43.478 3.88 0.00 46.01 0.98
2319 2582 1.133025 GCATCACAACTGCATACCACC 59.867 52.381 0.00 0.00 39.46 4.61
2431 2695 0.826062 AGCTGCCACTTTTTGTTGCT 59.174 45.000 0.00 0.00 38.07 3.91
2495 2759 4.060900 CTGTATCGCTTGATATGCTTGGT 58.939 43.478 0.00 0.00 36.96 3.67
2596 2860 4.363991 AGTGCTTTCTCAGTTCAAGGAT 57.636 40.909 0.00 0.00 0.00 3.24
2624 2888 9.994432 CTGTTATTTAAGAGCTTCATGGTTAAG 57.006 33.333 0.00 0.00 0.00 1.85
2983 3248 0.814457 GCAACCGTGGCCAAATCATA 59.186 50.000 7.24 0.00 0.00 2.15
3204 3469 6.636562 TTTCCTACCGCAAGACAAAAATTA 57.363 33.333 0.00 0.00 43.02 1.40
3349 3626 2.884207 GACCCCACGATCGAACGC 60.884 66.667 24.34 1.94 36.70 4.84
3418 3695 1.197721 GAATGTGGGAAGCACGTTCTG 59.802 52.381 1.88 0.00 42.28 3.02
3512 3789 4.995124 AGAGCATGATTTCATTGAAGTGC 58.005 39.130 14.77 14.77 33.61 4.40
3526 3803 5.910637 TTGAAGTGCATTTTCAAATCAGC 57.089 34.783 20.43 0.00 40.50 4.26
3528 3805 5.224888 TGAAGTGCATTTTCAAATCAGCTC 58.775 37.500 12.53 0.00 31.98 4.09
3580 3857 3.820467 TGTTTTGCCAGTGACCTGAATAG 59.180 43.478 0.00 0.00 41.50 1.73
3691 3968 8.406172 TGCTTGAATGAACTAAAACTTGAAAC 57.594 30.769 0.00 0.00 0.00 2.78
3761 4039 7.491372 GTCGTGATCTGGTGTTGAAATATCTTA 59.509 37.037 0.00 0.00 0.00 2.10
3834 6728 4.976987 TGAAAACAGAACCTTGACGTTTC 58.023 39.130 0.00 0.00 0.00 2.78
3840 6734 8.441312 AAACAGAACCTTGACGTTTCTATTAA 57.559 30.769 0.00 0.00 0.00 1.40
3844 6738 9.199982 CAGAACCTTGACGTTTCTATTAACTTA 57.800 33.333 0.00 0.00 0.00 2.24
3898 6792 7.444183 CAGTAAGTTGTAAGATTTCCACCTTGA 59.556 37.037 0.00 0.00 0.00 3.02
3904 6798 8.880750 GTTGTAAGATTTCCACCTTGATAGTAC 58.119 37.037 0.00 0.00 0.00 2.73
3966 6945 2.063156 TAATTTTGCACTTGCTGCCG 57.937 45.000 2.33 0.00 46.51 5.69
4176 7155 6.106673 GGTAAGTAGTGAATTGCTTGCTCTA 58.893 40.000 0.00 0.00 0.00 2.43
4178 7157 7.281100 GGTAAGTAGTGAATTGCTTGCTCTATT 59.719 37.037 0.00 0.00 0.00 1.73
4179 7158 6.917217 AGTAGTGAATTGCTTGCTCTATTC 57.083 37.500 0.00 0.00 0.00 1.75
4180 7159 5.819901 AGTAGTGAATTGCTTGCTCTATTCC 59.180 40.000 0.00 0.00 30.66 3.01
4182 7161 5.259632 AGTGAATTGCTTGCTCTATTCCTT 58.740 37.500 0.00 0.00 30.66 3.36
4183 7162 5.125097 AGTGAATTGCTTGCTCTATTCCTTG 59.875 40.000 0.00 0.00 30.66 3.61
4257 7247 7.889469 AGATTAAAATCAGCATGTTGTCTGTT 58.111 30.769 9.54 3.08 37.89 3.16
4258 7248 8.362639 AGATTAAAATCAGCATGTTGTCTGTTT 58.637 29.630 9.54 8.14 37.89 2.83
4259 7249 7.697352 TTAAAATCAGCATGTTGTCTGTTTG 57.303 32.000 9.54 0.00 37.40 2.93
4260 7250 4.924305 AATCAGCATGTTGTCTGTTTGT 57.076 36.364 9.54 0.00 37.40 2.83
4261 7251 3.696281 TCAGCATGTTGTCTGTTTGTG 57.304 42.857 9.54 0.00 37.40 3.33
4262 7252 3.016031 TCAGCATGTTGTCTGTTTGTGT 58.984 40.909 9.54 0.00 37.40 3.72
4263 7253 3.443329 TCAGCATGTTGTCTGTTTGTGTT 59.557 39.130 9.54 0.00 37.40 3.32
4264 7254 4.082300 TCAGCATGTTGTCTGTTTGTGTTT 60.082 37.500 9.54 0.00 37.40 2.83
4265 7255 4.031991 CAGCATGTTGTCTGTTTGTGTTTG 59.968 41.667 0.65 0.00 0.00 2.93
4266 7256 4.082300 AGCATGTTGTCTGTTTGTGTTTGA 60.082 37.500 0.00 0.00 0.00 2.69
4267 7257 4.031652 GCATGTTGTCTGTTTGTGTTTGAC 59.968 41.667 0.00 0.00 0.00 3.18
4303 7304 5.068460 GTCCTGAGTGTGATACAATCTAGCT 59.932 44.000 10.22 0.00 42.99 3.32
4387 7405 3.130869 GCCAATCATTACTGCACATTCCA 59.869 43.478 0.00 0.00 0.00 3.53
4432 7450 1.825090 TGCAATGACCATGGAGTGTC 58.175 50.000 21.47 5.87 0.00 3.67
4586 7606 4.327680 ACAGCTCTTTACATTCAGAACCC 58.672 43.478 0.00 0.00 0.00 4.11
4593 7613 7.230849 TCTTTACATTCAGAACCCGTAGTAA 57.769 36.000 0.00 0.00 0.00 2.24
4601 7621 7.662604 TTCAGAACCCGTAGTAATTTCTTTC 57.337 36.000 0.00 0.00 0.00 2.62
4605 7625 5.509832 ACCCGTAGTAATTTCTTTCCCTT 57.490 39.130 0.00 0.00 0.00 3.95
4606 7626 5.494724 ACCCGTAGTAATTTCTTTCCCTTC 58.505 41.667 0.00 0.00 0.00 3.46
4607 7627 5.250082 ACCCGTAGTAATTTCTTTCCCTTCT 59.750 40.000 0.00 0.00 0.00 2.85
4707 7730 3.099905 TCTCGGTTGATGAAGGTGAGAT 58.900 45.455 0.00 0.00 0.00 2.75
4708 7731 3.118992 TCTCGGTTGATGAAGGTGAGATG 60.119 47.826 0.00 0.00 0.00 2.90
4791 7814 9.667107 TTCATACCGAAATTTAGTTCTGAGAAT 57.333 29.630 0.00 0.00 0.00 2.40
5050 8073 0.389948 CTGGTCCGTAACTGCTCACC 60.390 60.000 0.00 0.00 0.00 4.02
5065 8088 3.181449 TGCTCACCAGCCAACTAAGTAAA 60.181 43.478 0.00 0.00 46.26 2.01
5274 8297 1.273886 GAGCTTCTCCATCGTATCCCC 59.726 57.143 0.00 0.00 0.00 4.81
5353 8376 3.609853 TGGGAGATCCAATGTTTTCTCG 58.390 45.455 0.47 0.00 43.84 4.04
5701 8726 4.744570 CTGGTGTACATCGTCAACTACAT 58.255 43.478 0.00 0.00 0.00 2.29
5724 8749 3.447944 GGGTTCTGTCTGTAACCTCTAGG 59.552 52.174 0.00 0.00 43.87 3.02
5749 8774 9.609346 GGCTGTAATTATTTTCTCTTGGTACTA 57.391 33.333 0.00 0.00 0.00 1.82
5768 8793 7.886446 TGGTACTAATTTACTTTTCTGGGAAGG 59.114 37.037 0.00 0.00 0.00 3.46
5814 8876 1.830279 CTGCCTTGTGACCATGTCAT 58.170 50.000 0.00 0.00 44.63 3.06
5827 8889 3.282021 CCATGTCATGGGTTAAGTCCTG 58.718 50.000 22.45 0.00 46.86 3.86
5842 8914 4.278975 AGTCCTGAAAACAGCCTCTTAG 57.721 45.455 0.00 0.00 0.00 2.18
5862 8934 9.094578 CTCTTAGATAGAAATGTAGGGAATGGA 57.905 37.037 0.00 0.00 30.91 3.41
5863 8935 8.871125 TCTTAGATAGAAATGTAGGGAATGGAC 58.129 37.037 0.00 0.00 0.00 4.02
5864 8936 6.441088 AGATAGAAATGTAGGGAATGGACC 57.559 41.667 0.00 0.00 0.00 4.46
5876 8948 2.844348 GGAATGGACCCTTCCTGTAGAA 59.156 50.000 18.62 0.00 43.31 2.10
5877 8949 3.265995 GGAATGGACCCTTCCTGTAGAAA 59.734 47.826 18.62 0.00 43.31 2.52
5883 8969 2.290960 ACCCTTCCTGTAGAAACATGCC 60.291 50.000 0.00 0.00 34.37 4.40
5889 8975 1.474077 CTGTAGAAACATGCCCAAGCC 59.526 52.381 0.00 0.00 38.69 4.35
5948 9077 5.295787 TCTGAAACTTGAAACGCACAGTAAT 59.704 36.000 0.00 0.00 0.00 1.89
6032 9162 1.390463 CGAACCAAGCGTAGAGAAAGC 59.610 52.381 0.00 0.00 0.00 3.51
6034 9164 0.317479 ACCAAGCGTAGAGAAAGCGT 59.683 50.000 0.00 0.00 37.69 5.07
6059 9191 3.252215 TGTAGTCATTTTGGTTTGCCTCG 59.748 43.478 0.00 0.00 35.27 4.63
6082 9214 6.788458 TCGTCTTTTTAATGTTGATCGTTTCG 59.212 34.615 0.00 0.00 0.00 3.46
6083 9215 6.031003 CGTCTTTTTAATGTTGATCGTTTCGG 59.969 38.462 0.00 0.00 0.00 4.30
6172 9304 7.575414 TTTCATTAGTGCCTTTCTGTTAACA 57.425 32.000 8.28 8.28 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.037297 TCCTCCATAGAAATAGGATTCCATTCC 60.037 40.741 5.29 0.00 33.18 3.01
6 7 7.922382 TCCTCCATAGAAATAGGATTCCATTC 58.078 38.462 5.29 6.63 33.18 2.67
10 11 8.610369 AGATTTCCTCCATAGAAATAGGATTCC 58.390 37.037 0.00 0.00 42.53 3.01
14 15 7.978925 GGAAGATTTCCTCCATAGAAATAGGA 58.021 38.462 0.61 0.00 46.57 2.94
30 31 9.972106 ATGAAATATGGAGGATAGGAAGATTTC 57.028 33.333 0.00 0.00 33.45 2.17
33 34 9.223291 CCTATGAAATATGGAGGATAGGAAGAT 57.777 37.037 0.00 0.00 36.16 2.40
34 35 8.409825 TCCTATGAAATATGGAGGATAGGAAGA 58.590 37.037 0.00 0.00 38.86 2.87
35 36 8.615360 TCCTATGAAATATGGAGGATAGGAAG 57.385 38.462 0.00 0.00 38.86 3.46
36 37 8.989045 TTCCTATGAAATATGGAGGATAGGAA 57.011 34.615 12.28 12.28 44.60 3.36
37 38 8.989045 TTTCCTATGAAATATGGAGGATAGGA 57.011 34.615 0.00 0.00 39.66 2.94
91 92 9.300681 TGTTCTTTGATTCACTTCATAGGATTT 57.699 29.630 0.00 0.00 0.00 2.17
92 93 8.868522 TGTTCTTTGATTCACTTCATAGGATT 57.131 30.769 0.00 0.00 0.00 3.01
93 94 9.118300 GATGTTCTTTGATTCACTTCATAGGAT 57.882 33.333 0.00 0.00 0.00 3.24
94 95 8.324306 AGATGTTCTTTGATTCACTTCATAGGA 58.676 33.333 0.00 0.00 0.00 2.94
95 96 8.503458 AGATGTTCTTTGATTCACTTCATAGG 57.497 34.615 0.00 0.00 0.00 2.57
96 97 8.610896 GGAGATGTTCTTTGATTCACTTCATAG 58.389 37.037 0.00 0.00 0.00 2.23
97 98 8.324306 AGGAGATGTTCTTTGATTCACTTCATA 58.676 33.333 0.00 0.00 0.00 2.15
98 99 7.173722 AGGAGATGTTCTTTGATTCACTTCAT 58.826 34.615 0.00 0.00 0.00 2.57
99 100 6.537355 AGGAGATGTTCTTTGATTCACTTCA 58.463 36.000 0.00 0.00 0.00 3.02
100 101 7.446001 AAGGAGATGTTCTTTGATTCACTTC 57.554 36.000 0.00 0.00 0.00 3.01
101 102 7.040132 GGAAAGGAGATGTTCTTTGATTCACTT 60.040 37.037 0.00 0.00 33.85 3.16
102 103 6.432472 GGAAAGGAGATGTTCTTTGATTCACT 59.568 38.462 0.00 0.00 33.85 3.41
103 104 6.432472 AGGAAAGGAGATGTTCTTTGATTCAC 59.568 38.462 0.00 0.00 33.85 3.18
104 105 6.546484 AGGAAAGGAGATGTTCTTTGATTCA 58.454 36.000 0.00 0.00 33.85 2.57
105 106 8.744568 ATAGGAAAGGAGATGTTCTTTGATTC 57.255 34.615 0.00 0.00 33.85 2.52
106 107 9.539194 AAATAGGAAAGGAGATGTTCTTTGATT 57.461 29.630 0.00 0.00 33.85 2.57
107 108 9.539194 AAAATAGGAAAGGAGATGTTCTTTGAT 57.461 29.630 0.00 0.00 33.85 2.57
108 109 8.940397 AAAATAGGAAAGGAGATGTTCTTTGA 57.060 30.769 0.00 0.00 33.85 2.69
112 113 9.674068 GAGTAAAAATAGGAAAGGAGATGTTCT 57.326 33.333 0.00 0.00 0.00 3.01
113 114 8.604890 CGAGTAAAAATAGGAAAGGAGATGTTC 58.395 37.037 0.00 0.00 0.00 3.18
114 115 8.101419 ACGAGTAAAAATAGGAAAGGAGATGTT 58.899 33.333 0.00 0.00 0.00 2.71
115 116 7.621796 ACGAGTAAAAATAGGAAAGGAGATGT 58.378 34.615 0.00 0.00 0.00 3.06
116 117 9.250624 CTACGAGTAAAAATAGGAAAGGAGATG 57.749 37.037 0.00 0.00 0.00 2.90
117 118 8.422566 CCTACGAGTAAAAATAGGAAAGGAGAT 58.577 37.037 0.00 0.00 37.02 2.75
118 119 7.616935 TCCTACGAGTAAAAATAGGAAAGGAGA 59.383 37.037 0.00 0.00 40.19 3.71
119 120 7.779073 TCCTACGAGTAAAAATAGGAAAGGAG 58.221 38.462 0.00 0.00 40.19 3.69
120 121 7.722949 TCCTACGAGTAAAAATAGGAAAGGA 57.277 36.000 0.00 0.00 40.19 3.36
121 122 8.959705 AATCCTACGAGTAAAAATAGGAAAGG 57.040 34.615 3.11 0.00 44.88 3.11
123 124 9.947433 TCAAATCCTACGAGTAAAAATAGGAAA 57.053 29.630 3.11 0.00 44.88 3.13
124 125 9.595823 CTCAAATCCTACGAGTAAAAATAGGAA 57.404 33.333 3.11 0.00 44.88 3.36
125 126 8.974238 TCTCAAATCCTACGAGTAAAAATAGGA 58.026 33.333 1.50 1.50 45.60 2.94
126 127 9.765795 ATCTCAAATCCTACGAGTAAAAATAGG 57.234 33.333 0.00 0.00 36.32 2.57
128 129 9.042008 GCATCTCAAATCCTACGAGTAAAAATA 57.958 33.333 0.00 0.00 0.00 1.40
129 130 7.552687 TGCATCTCAAATCCTACGAGTAAAAAT 59.447 33.333 0.00 0.00 0.00 1.82
130 131 6.876789 TGCATCTCAAATCCTACGAGTAAAAA 59.123 34.615 0.00 0.00 0.00 1.94
131 132 6.403049 TGCATCTCAAATCCTACGAGTAAAA 58.597 36.000 0.00 0.00 0.00 1.52
132 133 5.972935 TGCATCTCAAATCCTACGAGTAAA 58.027 37.500 0.00 0.00 0.00 2.01
133 134 5.592104 TGCATCTCAAATCCTACGAGTAA 57.408 39.130 0.00 0.00 0.00 2.24
134 135 5.069119 ACATGCATCTCAAATCCTACGAGTA 59.931 40.000 0.00 0.00 0.00 2.59
135 136 4.141846 ACATGCATCTCAAATCCTACGAGT 60.142 41.667 0.00 0.00 0.00 4.18
136 137 4.375272 ACATGCATCTCAAATCCTACGAG 58.625 43.478 0.00 0.00 0.00 4.18
137 138 4.406648 ACATGCATCTCAAATCCTACGA 57.593 40.909 0.00 0.00 0.00 3.43
138 139 6.162079 AGATACATGCATCTCAAATCCTACG 58.838 40.000 2.32 0.00 28.83 3.51
139 140 7.593875 GAGATACATGCATCTCAAATCCTAC 57.406 40.000 25.08 1.37 46.84 3.18
149 150 9.961264 ATCATAGAAAATGAGATACATGCATCT 57.039 29.630 8.23 8.23 39.39 2.90
153 154 9.837525 GGAAATCATAGAAAATGAGATACATGC 57.162 33.333 0.00 0.00 39.39 4.06
159 160 9.972106 GGATAGGGAAATCATAGAAAATGAGAT 57.028 33.333 0.00 0.00 0.00 2.75
160 161 9.175577 AGGATAGGGAAATCATAGAAAATGAGA 57.824 33.333 0.00 0.00 0.00 3.27
166 167 9.621239 ACTCATAGGATAGGGAAATCATAGAAA 57.379 33.333 0.00 0.00 0.00 2.52
172 173 9.170890 ACATTTACTCATAGGATAGGGAAATCA 57.829 33.333 0.00 0.00 0.00 2.57
173 174 9.442047 CACATTTACTCATAGGATAGGGAAATC 57.558 37.037 0.00 0.00 0.00 2.17
174 175 9.170890 TCACATTTACTCATAGGATAGGGAAAT 57.829 33.333 0.00 0.00 0.00 2.17
175 176 8.561536 TCACATTTACTCATAGGATAGGGAAA 57.438 34.615 0.00 0.00 0.00 3.13
176 177 8.561536 TTCACATTTACTCATAGGATAGGGAA 57.438 34.615 0.00 0.00 0.00 3.97
177 178 7.235606 CCTTCACATTTACTCATAGGATAGGGA 59.764 40.741 0.00 0.00 0.00 4.20
178 179 7.235606 TCCTTCACATTTACTCATAGGATAGGG 59.764 40.741 0.00 0.00 0.00 3.53
179 180 8.195165 TCCTTCACATTTACTCATAGGATAGG 57.805 38.462 0.00 0.00 0.00 2.57
183 184 9.379770 TCATATCCTTCACATTTACTCATAGGA 57.620 33.333 0.00 0.00 35.24 2.94
215 216 9.367160 GGAATGGGATCCTATTTCTATGAAAAA 57.633 33.333 22.86 0.00 36.50 1.94
216 217 8.940397 GGAATGGGATCCTATTTCTATGAAAA 57.060 34.615 22.86 0.00 36.50 2.29
230 231 5.163374 CCTTTGATTTGAAGGAATGGGATCC 60.163 44.000 1.92 1.92 45.25 3.36
231 232 5.910614 CCTTTGATTTGAAGGAATGGGATC 58.089 41.667 0.00 0.00 45.25 3.36
232 233 5.945144 CCTTTGATTTGAAGGAATGGGAT 57.055 39.130 0.00 0.00 45.25 3.85
302 303 5.183331 GGCCTCTTTAGTTCGGAAGATTTTT 59.817 40.000 0.00 0.00 41.60 1.94
303 304 4.700692 GGCCTCTTTAGTTCGGAAGATTTT 59.299 41.667 0.00 0.00 41.60 1.82
304 305 4.019231 AGGCCTCTTTAGTTCGGAAGATTT 60.019 41.667 0.00 0.00 41.60 2.17
305 306 3.519913 AGGCCTCTTTAGTTCGGAAGATT 59.480 43.478 0.00 0.00 41.60 2.40
306 307 3.108376 AGGCCTCTTTAGTTCGGAAGAT 58.892 45.455 0.00 0.00 41.60 2.40
307 308 2.233922 CAGGCCTCTTTAGTTCGGAAGA 59.766 50.000 0.00 0.00 39.20 2.87
308 309 2.233922 TCAGGCCTCTTTAGTTCGGAAG 59.766 50.000 0.00 0.00 0.00 3.46
309 310 2.253610 TCAGGCCTCTTTAGTTCGGAA 58.746 47.619 0.00 0.00 0.00 4.30
310 311 1.933021 TCAGGCCTCTTTAGTTCGGA 58.067 50.000 0.00 0.00 0.00 4.55
311 312 2.762535 TTCAGGCCTCTTTAGTTCGG 57.237 50.000 0.00 0.00 0.00 4.30
312 313 3.437049 CCTTTTCAGGCCTCTTTAGTTCG 59.563 47.826 0.00 0.00 31.53 3.95
325 326 0.032540 GTGTGGCTTGCCTTTTCAGG 59.967 55.000 13.18 0.00 44.28 3.86
326 327 0.746063 TGTGTGGCTTGCCTTTTCAG 59.254 50.000 13.18 0.00 0.00 3.02
327 328 0.746063 CTGTGTGGCTTGCCTTTTCA 59.254 50.000 13.18 6.28 0.00 2.69
328 329 0.032540 CCTGTGTGGCTTGCCTTTTC 59.967 55.000 13.18 2.23 0.00 2.29
329 330 0.396974 TCCTGTGTGGCTTGCCTTTT 60.397 50.000 13.18 0.00 35.26 2.27
330 331 0.396974 TTCCTGTGTGGCTTGCCTTT 60.397 50.000 13.18 0.00 35.26 3.11
331 332 0.178953 ATTCCTGTGTGGCTTGCCTT 60.179 50.000 13.18 0.00 35.26 4.35
332 333 0.698238 TATTCCTGTGTGGCTTGCCT 59.302 50.000 13.18 0.00 35.26 4.75
333 334 0.811281 GTATTCCTGTGTGGCTTGCC 59.189 55.000 4.43 4.43 35.26 4.52
334 335 1.470098 CTGTATTCCTGTGTGGCTTGC 59.530 52.381 0.00 0.00 35.26 4.01
335 336 2.783135 ACTGTATTCCTGTGTGGCTTG 58.217 47.619 0.00 0.00 35.26 4.01
336 337 3.508845 AACTGTATTCCTGTGTGGCTT 57.491 42.857 0.00 0.00 35.26 4.35
337 338 3.508845 AAACTGTATTCCTGTGTGGCT 57.491 42.857 0.00 0.00 35.26 4.75
338 339 5.001232 TCTAAAACTGTATTCCTGTGTGGC 58.999 41.667 0.00 0.00 35.26 5.01
339 340 5.120208 CGTCTAAAACTGTATTCCTGTGTGG 59.880 44.000 0.00 0.00 37.10 4.17
340 341 5.389516 GCGTCTAAAACTGTATTCCTGTGTG 60.390 44.000 0.00 0.00 0.00 3.82
341 342 4.689345 GCGTCTAAAACTGTATTCCTGTGT 59.311 41.667 0.00 0.00 0.00 3.72
342 343 4.201589 CGCGTCTAAAACTGTATTCCTGTG 60.202 45.833 0.00 0.00 0.00 3.66
343 344 3.924686 CGCGTCTAAAACTGTATTCCTGT 59.075 43.478 0.00 0.00 0.00 4.00
344 345 3.306166 CCGCGTCTAAAACTGTATTCCTG 59.694 47.826 4.92 0.00 0.00 3.86
345 346 3.518590 CCGCGTCTAAAACTGTATTCCT 58.481 45.455 4.92 0.00 0.00 3.36
346 347 2.606272 CCCGCGTCTAAAACTGTATTCC 59.394 50.000 4.92 0.00 0.00 3.01
347 348 2.606272 CCCCGCGTCTAAAACTGTATTC 59.394 50.000 4.92 0.00 0.00 1.75
348 349 2.624636 CCCCGCGTCTAAAACTGTATT 58.375 47.619 4.92 0.00 0.00 1.89
349 350 1.741394 GCCCCGCGTCTAAAACTGTAT 60.741 52.381 4.92 0.00 0.00 2.29
350 351 0.390209 GCCCCGCGTCTAAAACTGTA 60.390 55.000 4.92 0.00 0.00 2.74
351 352 1.670083 GCCCCGCGTCTAAAACTGT 60.670 57.895 4.92 0.00 0.00 3.55
352 353 1.375523 AGCCCCGCGTCTAAAACTG 60.376 57.895 4.92 0.00 0.00 3.16
353 354 1.375523 CAGCCCCGCGTCTAAAACT 60.376 57.895 4.92 0.00 0.00 2.66
354 355 0.743345 ATCAGCCCCGCGTCTAAAAC 60.743 55.000 4.92 0.00 0.00 2.43
376 381 4.478195 CGTGACCGGATCAGACAC 57.522 61.111 9.46 7.45 38.28 3.67
387 392 2.757056 GCAAATACGGCCCGTGACC 61.757 63.158 21.20 0.00 41.39 4.02
396 401 6.197096 GCAGAATACAGAATTTGCAAATACGG 59.803 38.462 24.35 17.51 34.48 4.02
405 410 4.701651 TGTCCCTGCAGAATACAGAATTTG 59.298 41.667 17.39 0.00 37.32 2.32
412 417 2.028112 GTGTCTGTCCCTGCAGAATACA 60.028 50.000 17.39 14.60 45.75 2.29
470 481 2.024414 ACGGGAGAAATTAATGCAGGC 58.976 47.619 0.00 0.00 0.00 4.85
485 496 4.779733 GGAGGAGGGCAGACGGGA 62.780 72.222 0.00 0.00 0.00 5.14
489 506 0.325203 AGAAGAGGAGGAGGGCAGAC 60.325 60.000 0.00 0.00 0.00 3.51
492 509 0.415429 AGAAGAAGAGGAGGAGGGCA 59.585 55.000 0.00 0.00 0.00 5.36
493 510 1.119684 GAGAAGAAGAGGAGGAGGGC 58.880 60.000 0.00 0.00 0.00 5.19
495 512 1.007721 TGGGAGAAGAAGAGGAGGAGG 59.992 57.143 0.00 0.00 0.00 4.30
559 576 4.179599 GAGGAGGGGGAGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
560 577 4.548513 CGAGGAGGGGGAGGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
735 969 2.226225 GGATTCGACGCCCGTAACG 61.226 63.158 0.00 0.00 39.75 3.18
736 970 2.226225 CGGATTCGACGCCCGTAAC 61.226 63.158 12.72 0.00 38.55 2.50
761 997 1.410850 TTGGGGGCAGATCTCGATCC 61.411 60.000 0.00 0.00 38.58 3.36
825 1061 1.745115 CGCCGCTCCAAATTCAGGA 60.745 57.895 0.25 0.25 0.00 3.86
864 1109 3.906008 CCGACAAAAAGAAATACACAGCG 59.094 43.478 0.00 0.00 0.00 5.18
876 1123 1.423845 CGATCCCGCCGACAAAAAG 59.576 57.895 0.00 0.00 0.00 2.27
898 1145 1.225745 GTTCAAGCAACGCGGATCG 60.226 57.895 12.47 0.00 45.38 3.69
910 1159 1.626654 ATCCGCGTCGCTTGTTCAAG 61.627 55.000 16.36 8.04 0.00 3.02
914 1163 3.179265 CGATCCGCGTCGCTTGTT 61.179 61.111 16.36 1.30 34.56 2.83
924 1173 1.003331 TCAACACACAAAACGATCCGC 60.003 47.619 0.00 0.00 0.00 5.54
932 1181 3.488384 GCCGTCAGAATCAACACACAAAA 60.488 43.478 0.00 0.00 0.00 2.44
938 1187 1.132640 GCGCCGTCAGAATCAACAC 59.867 57.895 0.00 0.00 0.00 3.32
980 1229 0.603975 GCTGAACCCAACGAAGAGCT 60.604 55.000 0.00 0.00 0.00 4.09
1032 1281 0.397816 CGATCTCCAGGGTTCCCTCT 60.398 60.000 7.52 0.00 33.50 3.69
1064 1313 2.093941 ACTAGACGAGATGTGTTCGACG 59.906 50.000 0.00 0.00 40.36 5.12
1065 1314 3.418094 CACTAGACGAGATGTGTTCGAC 58.582 50.000 0.00 0.00 40.36 4.20
1067 1316 2.159503 AGCACTAGACGAGATGTGTTCG 60.160 50.000 0.00 0.00 43.38 3.95
1074 1323 3.181491 GCAGAAAGAGCACTAGACGAGAT 60.181 47.826 0.00 0.00 0.00 2.75
1081 1330 4.502962 AGCTAAAGCAGAAAGAGCACTAG 58.497 43.478 4.54 0.00 45.16 2.57
1090 1340 3.490761 GGCACACAAAGCTAAAGCAGAAA 60.491 43.478 4.54 0.00 45.16 2.52
1093 1343 1.336240 GGGCACACAAAGCTAAAGCAG 60.336 52.381 4.54 0.00 45.16 4.24
1127 1377 4.688419 CAACAGGCAACAGCGCGG 62.688 66.667 8.83 5.83 41.41 6.46
1128 1378 3.862063 GACAACAGGCAACAGCGCG 62.862 63.158 0.00 0.00 41.41 6.86
1133 1383 1.885388 CCGACGACAACAGGCAACA 60.885 57.895 0.00 0.00 41.41 3.33
1134 1384 2.604174 CCCGACGACAACAGGCAAC 61.604 63.158 0.00 0.00 0.00 4.17
1188 1438 2.189499 CCTATCCAAAGCTGGCGCC 61.189 63.158 22.73 22.73 43.17 6.53
1227 1477 5.742442 GCCTAAGCTCGTTTACATATACG 57.258 43.478 0.00 0.00 39.03 3.06
1287 1537 3.216800 TCCAGCAAAAGCTATATGGCTG 58.783 45.455 14.99 13.81 46.10 4.85
1326 1576 5.749462 ACAATTTGATTAGGTCCCTCTCTG 58.251 41.667 2.79 0.00 0.00 3.35
1383 1633 8.807581 GGAGCATAATGTTGCATAGTTAAAAAC 58.192 33.333 0.00 0.00 45.23 2.43
1451 1710 8.978539 GCTTCCAAAAAGGTTAACATTAGAAAG 58.021 33.333 5.85 7.34 39.02 2.62
1452 1711 8.700973 AGCTTCCAAAAAGGTTAACATTAGAAA 58.299 29.630 5.85 0.00 39.02 2.52
1524 1783 2.026262 ACTTTGACCCTATGCCGTTGAT 60.026 45.455 0.00 0.00 0.00 2.57
1547 1806 8.515695 TTTTCTAGCAGCAGTACTAGTATGTA 57.484 34.615 5.75 0.00 37.67 2.29
1891 2151 9.046296 AGAAGAGAATATTAATTAACCTGCACG 57.954 33.333 0.00 0.00 0.00 5.34
2072 2334 5.876357 AGTGCCTTCAAAGACCTGTATAAA 58.124 37.500 0.00 0.00 0.00 1.40
2181 2443 8.082242 GCTTCCTTTTAGAGAGCATTTAAACAA 58.918 33.333 0.00 0.00 33.68 2.83
2227 2490 7.506938 TGTCCTCATCATCAGTTCATCATACTA 59.493 37.037 0.00 0.00 0.00 1.82
2228 2491 6.325804 TGTCCTCATCATCAGTTCATCATACT 59.674 38.462 0.00 0.00 0.00 2.12
2319 2582 1.134640 TGTCCACGTTATCCCATTCCG 60.135 52.381 0.00 0.00 0.00 4.30
2391 2654 9.390795 GCAGCTTTCATATTCATATACAAACAG 57.609 33.333 0.00 0.00 0.00 3.16
2431 2695 5.817296 CACAGAAGCAGCATACCATAAGTAA 59.183 40.000 0.00 0.00 33.70 2.24
2477 2741 2.138320 CGACCAAGCATATCAAGCGAT 58.862 47.619 0.00 0.00 37.01 4.58
2495 2759 4.191033 TCCAGAGCCGTTAAAAATACGA 57.809 40.909 0.00 0.00 41.33 3.43
2964 3229 0.814457 TATGATTTGGCCACGGTTGC 59.186 50.000 3.88 0.00 0.00 4.17
2983 3248 7.463961 AAGAAATCAGATCAATCAACAAGCT 57.536 32.000 0.00 0.00 0.00 3.74
3349 3626 2.146342 GCAATACGAGGGGTGATGATG 58.854 52.381 0.00 0.00 0.00 3.07
3418 3695 6.577103 TGAACTCATATCTGTCAAGATGACC 58.423 40.000 7.94 0.00 46.40 4.02
3512 3789 4.352600 AGAGCGAGCTGATTTGAAAATG 57.647 40.909 0.84 0.00 0.00 2.32
3526 3803 2.096248 AGTACTCCAAGGAAGAGCGAG 58.904 52.381 0.00 0.00 34.56 5.03
3528 3805 2.494073 AGAAGTACTCCAAGGAAGAGCG 59.506 50.000 0.00 0.00 34.56 5.03
3691 3968 6.299023 TGTACTGCATTTTGTACAAGACAG 57.701 37.500 19.31 19.31 43.80 3.51
3725 4002 2.289072 CCAGATCACGACCAAACTCTGT 60.289 50.000 0.00 0.00 0.00 3.41
3761 4039 7.224557 GCAGTGGTGTGATTAACAAAGAAAAAT 59.775 33.333 0.00 0.00 41.57 1.82
3774 4063 0.667993 CGTTTGGCAGTGGTGTGATT 59.332 50.000 0.00 0.00 0.00 2.57
3800 4089 6.027749 GGTTCTGTTTTCAACACTAACACTG 58.972 40.000 10.21 0.00 36.25 3.66
3850 6744 8.974060 ACTGGATAGAGAAAACTACAAAACAA 57.026 30.769 0.00 0.00 0.00 2.83
3904 6798 9.547753 AAGTTACTACATATACTCCAAATGCAG 57.452 33.333 0.00 0.00 0.00 4.41
3966 6945 5.465724 CAGAAGTGGGTTACTGACTTGTTAC 59.534 44.000 4.72 0.00 40.26 2.50
4176 7155 0.037590 TTGCCGGTGCTACAAGGAAT 59.962 50.000 1.90 0.00 38.71 3.01
4178 7157 0.037590 AATTGCCGGTGCTACAAGGA 59.962 50.000 1.90 0.00 38.71 3.36
4179 7158 0.171007 CAATTGCCGGTGCTACAAGG 59.829 55.000 1.90 0.00 38.71 3.61
4180 7159 0.881118 ACAATTGCCGGTGCTACAAG 59.119 50.000 5.05 0.00 38.71 3.16
4182 7161 0.536233 ACACAATTGCCGGTGCTACA 60.536 50.000 5.05 0.00 38.57 2.74
4183 7162 0.596082 AACACAATTGCCGGTGCTAC 59.404 50.000 5.05 0.00 38.57 3.58
4257 7247 4.081752 ACTCAGCAAAATGGTCAAACACAA 60.082 37.500 0.00 0.00 0.00 3.33
4258 7248 3.446873 ACTCAGCAAAATGGTCAAACACA 59.553 39.130 0.00 0.00 0.00 3.72
4259 7249 4.044426 GACTCAGCAAAATGGTCAAACAC 58.956 43.478 0.00 0.00 0.00 3.32
4260 7250 3.068024 GGACTCAGCAAAATGGTCAAACA 59.932 43.478 0.00 0.00 0.00 2.83
4261 7251 3.319122 AGGACTCAGCAAAATGGTCAAAC 59.681 43.478 0.00 0.00 0.00 2.93
4262 7252 3.318839 CAGGACTCAGCAAAATGGTCAAA 59.681 43.478 0.00 0.00 0.00 2.69
4263 7253 2.886523 CAGGACTCAGCAAAATGGTCAA 59.113 45.455 0.00 0.00 0.00 3.18
4264 7254 2.106338 TCAGGACTCAGCAAAATGGTCA 59.894 45.455 0.00 0.00 0.00 4.02
4265 7255 2.746362 CTCAGGACTCAGCAAAATGGTC 59.254 50.000 0.00 0.00 0.00 4.02
4266 7256 2.107204 ACTCAGGACTCAGCAAAATGGT 59.893 45.455 0.00 0.00 0.00 3.55
4267 7257 2.486982 CACTCAGGACTCAGCAAAATGG 59.513 50.000 0.00 0.00 0.00 3.16
4409 7427 2.756207 CACTCCATGGTCATTGCATTCA 59.244 45.455 12.58 0.00 0.00 2.57
4432 7450 5.358160 GTGATATCTGTTTGGAGGGAAAAGG 59.642 44.000 3.98 0.00 0.00 3.11
4579 7599 5.353400 GGGAAAGAAATTACTACGGGTTCTG 59.647 44.000 0.00 0.00 0.00 3.02
4707 7730 2.489938 AAAGCTCGATTGGTAAGCCA 57.510 45.000 0.00 0.00 44.38 4.75
4708 7731 3.267483 TGTAAAGCTCGATTGGTAAGCC 58.733 45.455 0.00 0.00 36.69 4.35
4791 7814 6.151691 GCACTCTGCAAAGAATTATTGACAA 58.848 36.000 0.00 0.00 44.26 3.18
4840 7863 4.285775 TGGTTAGACACATCTGAATGGTCA 59.714 41.667 8.13 0.00 36.41 4.02
5050 8073 2.488153 GGCTGGTTTACTTAGTTGGCTG 59.512 50.000 0.00 0.00 0.00 4.85
5274 8297 2.802667 CGCATCCAAGGTCTTCGCG 61.803 63.158 0.00 0.00 34.89 5.87
5353 8376 6.558009 TGCTCAATTTATTCAATCTGCACTC 58.442 36.000 0.00 0.00 0.00 3.51
5509 8534 8.946085 GTTCAACATTCAACAATACAGGAGATA 58.054 33.333 0.00 0.00 0.00 1.98
5521 8546 2.164422 TGCGTTGGTTCAACATTCAACA 59.836 40.909 10.75 0.00 43.70 3.33
5522 8547 2.533942 GTGCGTTGGTTCAACATTCAAC 59.466 45.455 10.75 1.89 43.70 3.18
5523 8548 2.164422 TGTGCGTTGGTTCAACATTCAA 59.836 40.909 10.75 0.00 43.70 2.69
5524 8549 1.745653 TGTGCGTTGGTTCAACATTCA 59.254 42.857 10.75 3.38 43.70 2.57
5525 8550 2.483583 TGTGCGTTGGTTCAACATTC 57.516 45.000 10.75 1.20 43.70 2.67
5526 8551 2.360483 TCATGTGCGTTGGTTCAACATT 59.640 40.909 10.75 0.00 43.70 2.71
5527 8552 1.952990 TCATGTGCGTTGGTTCAACAT 59.047 42.857 10.75 0.00 43.70 2.71
5568 8593 1.608283 GCTCTTGCTAACAGTTCCGGT 60.608 52.381 0.00 0.00 36.03 5.28
5701 8726 2.972348 AGAGGTTACAGACAGAACCCA 58.028 47.619 0.22 0.00 45.33 4.51
5749 8774 5.333581 CTCCCCTTCCCAGAAAAGTAAATT 58.666 41.667 0.00 0.00 0.00 1.82
5750 8775 4.814521 GCTCCCCTTCCCAGAAAAGTAAAT 60.815 45.833 0.00 0.00 0.00 1.40
5822 8884 7.579723 TTCTATCTAAGAGGCTGTTTTCAGGAC 60.580 40.741 0.90 0.00 40.78 3.85
5823 8885 6.440647 TTCTATCTAAGAGGCTGTTTTCAGGA 59.559 38.462 0.90 0.00 40.78 3.86
5824 8886 6.644347 TTCTATCTAAGAGGCTGTTTTCAGG 58.356 40.000 0.90 0.00 40.78 3.86
5825 8887 8.610896 CATTTCTATCTAAGAGGCTGTTTTCAG 58.389 37.037 0.90 0.00 42.13 3.02
5827 8889 8.499403 ACATTTCTATCTAAGAGGCTGTTTTC 57.501 34.615 0.90 0.00 35.05 2.29
5842 8914 5.561679 GGGTCCATTCCCTACATTTCTATC 58.438 45.833 0.00 0.00 43.85 2.08
5862 8934 2.290960 GGCATGTTTCTACAGGAAGGGT 60.291 50.000 0.00 0.00 38.29 4.34
5863 8935 2.369394 GGCATGTTTCTACAGGAAGGG 58.631 52.381 0.00 0.00 38.29 3.95
5864 8936 2.290896 TGGGCATGTTTCTACAGGAAGG 60.291 50.000 0.00 0.00 38.29 3.46
5866 8938 3.420893 CTTGGGCATGTTTCTACAGGAA 58.579 45.455 0.00 0.00 38.29 3.36
5868 8940 1.474077 GCTTGGGCATGTTTCTACAGG 59.526 52.381 0.00 0.00 37.77 4.00
5870 8942 1.544724 GGCTTGGGCATGTTTCTACA 58.455 50.000 0.00 0.00 40.87 2.74
5871 8943 0.451783 CGGCTTGGGCATGTTTCTAC 59.548 55.000 0.00 0.00 40.87 2.59
5876 8948 2.361610 CTCCGGCTTGGGCATGTT 60.362 61.111 0.00 0.00 40.87 2.71
6017 9147 2.594654 CACTACGCTTTCTCTACGCTTG 59.405 50.000 0.00 0.00 0.00 4.01
6032 9162 5.144359 GCAAACCAAAATGACTACACTACG 58.856 41.667 0.00 0.00 0.00 3.51
6034 9164 5.381757 AGGCAAACCAAAATGACTACACTA 58.618 37.500 0.00 0.00 39.06 2.74
6059 9191 6.854381 ACCGAAACGATCAACATTAAAAAGAC 59.146 34.615 0.00 0.00 0.00 3.01
6082 9214 4.425577 AAAGCGATCATTCAAAGTCACC 57.574 40.909 0.00 0.00 0.00 4.02
6083 9215 5.451908 TCAAAAGCGATCATTCAAAGTCAC 58.548 37.500 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.