Multiple sequence alignment - TraesCS7A01G361900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G361900 chr7A 100.000 5494 0 0 1577 7070 536514240 536508747 0.000000e+00 10146.0
1 TraesCS7A01G361900 chr7A 100.000 1122 0 0 1 1122 536515816 536514695 0.000000e+00 2073.0
2 TraesCS7A01G361900 chr7A 76.730 1113 245 12 4916 6021 377979785 377980890 6.060000e-170 608.0
3 TraesCS7A01G361900 chr7A 82.692 260 31 7 6801 7047 536125123 536124865 1.190000e-52 219.0
4 TraesCS7A01G361900 chr7A 80.203 197 33 6 3019 3212 705702341 705702148 7.390000e-30 143.0
5 TraesCS7A01G361900 chr7A 90.698 86 7 1 4505 4590 475977268 475977184 5.800000e-21 113.0
6 TraesCS7A01G361900 chr7A 89.412 85 6 3 4507 4590 153377813 153377895 3.490000e-18 104.0
7 TraesCS7A01G361900 chr7D 93.427 2982 128 22 1577 4507 463887656 463890620 0.000000e+00 4359.0
8 TraesCS7A01G361900 chr7D 95.654 1887 45 19 4589 6445 463890614 463892493 0.000000e+00 2996.0
9 TraesCS7A01G361900 chr7D 93.373 498 21 2 6576 7070 463892712 463893200 0.000000e+00 726.0
10 TraesCS7A01G361900 chr7D 76.359 1159 258 14 4916 6066 355563520 355562370 6.060000e-170 608.0
11 TraesCS7A01G361900 chr7D 92.254 426 24 6 1 417 463885920 463886345 4.720000e-166 595.0
12 TraesCS7A01G361900 chr7D 87.719 399 23 14 654 1035 463886720 463887109 6.510000e-120 442.0
13 TraesCS7A01G361900 chr7D 84.231 260 27 7 6801 7047 463961565 463961823 2.550000e-59 241.0
14 TraesCS7A01G361900 chr7D 81.726 197 30 6 3019 3212 613911235 613911042 7.340000e-35 159.0
15 TraesCS7A01G361900 chr7D 81.726 197 30 6 3019 3212 614390042 614389849 7.340000e-35 159.0
16 TraesCS7A01G361900 chr7D 100.000 47 0 0 1076 1122 463887547 463887593 3.510000e-13 87.9
17 TraesCS7A01G361900 chr7B 95.385 1885 52 13 4589 6445 487804909 487803032 0.000000e+00 2966.0
18 TraesCS7A01G361900 chr7B 90.457 1771 116 17 1577 3314 487807987 487806237 0.000000e+00 2285.0
19 TraesCS7A01G361900 chr7B 93.828 1199 40 18 3325 4507 487806083 487804903 0.000000e+00 1773.0
20 TraesCS7A01G361900 chr7B 87.654 648 24 13 6458 7070 487802840 487802214 0.000000e+00 702.0
21 TraesCS7A01G361900 chr7B 76.445 1159 257 13 4916 6066 307364532 307363382 1.300000e-171 614.0
22 TraesCS7A01G361900 chr7B 90.476 399 21 13 66 450 487809631 487809236 1.760000e-140 510.0
23 TraesCS7A01G361900 chr7B 86.005 443 20 19 673 1097 487808872 487808454 3.030000e-118 436.0
24 TraesCS7A01G361900 chr7B 83.846 260 28 7 6801 7047 487221865 487221607 1.190000e-57 235.0
25 TraesCS7A01G361900 chr7B 77.903 267 33 15 3087 3328 197403326 197403061 7.390000e-30 143.0
26 TraesCS7A01G361900 chr7B 86.957 92 11 1 4507 4598 524994212 524994302 1.250000e-17 102.0
27 TraesCS7A01G361900 chr5D 89.726 146 14 1 3197 3341 246308542 246308397 1.210000e-42 185.0
28 TraesCS7A01G361900 chr5D 87.368 95 8 2 4500 4590 302970013 302969919 9.700000e-19 106.0
29 TraesCS7A01G361900 chr5D 94.737 38 2 0 1083 1120 444721532 444721569 7.660000e-05 60.2
30 TraesCS7A01G361900 chr1D 77.778 306 44 16 3018 3306 391198989 391198691 4.390000e-37 167.0
31 TraesCS7A01G361900 chr1D 97.143 35 1 0 591 625 442376666 442376632 7.660000e-05 60.2
32 TraesCS7A01G361900 chr2A 86.525 141 19 0 3197 3337 181809964 181810104 9.500000e-34 156.0
33 TraesCS7A01G361900 chr2A 90.476 84 4 2 4507 4590 166854947 166854868 2.700000e-19 108.0
34 TraesCS7A01G361900 chr4A 85.315 143 20 1 3197 3338 457822042 457822184 5.710000e-31 147.0
35 TraesCS7A01G361900 chr2B 87.097 124 16 0 3214 3337 229536406 229536529 2.660000e-29 141.0
36 TraesCS7A01G361900 chr2B 79.365 189 32 6 3026 3212 109065480 109065297 7.450000e-25 126.0
37 TraesCS7A01G361900 chr2B 91.304 46 4 0 6155 6200 30133357 30133312 5.920000e-06 63.9
38 TraesCS7A01G361900 chr1B 84.354 147 19 4 3197 3341 563126890 563126746 2.660000e-29 141.0
39 TraesCS7A01G361900 chr4D 94.253 87 2 1 4507 4590 401206909 401206823 5.760000e-26 130.0
40 TraesCS7A01G361900 chr4D 97.222 36 1 0 590 625 206829486 206829521 2.130000e-05 62.1
41 TraesCS7A01G361900 chr3D 83.916 143 15 4 3197 3338 506190844 506190709 5.760000e-26 130.0
42 TraesCS7A01G361900 chr2D 79.365 189 32 6 3026 3212 72618285 72618102 7.450000e-25 126.0
43 TraesCS7A01G361900 chr2D 78.836 189 33 6 3026 3212 72348103 72347920 3.460000e-23 121.0
44 TraesCS7A01G361900 chr5B 90.909 88 7 1 4507 4593 472738607 472738520 4.480000e-22 117.0
45 TraesCS7A01G361900 chr5B 88.636 88 9 1 4507 4593 472738476 472738389 9.700000e-19 106.0
46 TraesCS7A01G361900 chr5B 94.737 38 2 0 1083 1120 541609320 541609357 7.660000e-05 60.2
47 TraesCS7A01G361900 chr6B 87.234 94 9 3 4497 4590 700090381 700090471 3.490000e-18 104.0
48 TraesCS7A01G361900 chr5A 100.000 28 0 0 1093 1120 561653925 561653952 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G361900 chr7A 536508747 536515816 7069 True 6109.500000 10146 100.000000 1 7070 2 chr7A.!!$R4 7069
1 TraesCS7A01G361900 chr7A 377979785 377980890 1105 False 608.000000 608 76.730000 4916 6021 1 chr7A.!!$F2 1105
2 TraesCS7A01G361900 chr7D 463885920 463893200 7280 False 1534.316667 4359 93.737833 1 7070 6 chr7D.!!$F2 7069
3 TraesCS7A01G361900 chr7D 355562370 355563520 1150 True 608.000000 608 76.359000 4916 6066 1 chr7D.!!$R1 1150
4 TraesCS7A01G361900 chr7B 487802214 487809631 7417 True 1445.333333 2966 90.634167 66 7070 6 chr7B.!!$R4 7004
5 TraesCS7A01G361900 chr7B 307363382 307364532 1150 True 614.000000 614 76.445000 4916 6066 1 chr7B.!!$R2 1150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 1066 0.249363 GTCGGAATAAGACGGCTCCC 60.249 60.000 0.00 0.00 0.00 4.30 F
1831 2546 0.105964 TGAAAGCTGTACGTGGCAGT 59.894 50.000 18.66 7.25 36.42 4.40 F
2381 3105 0.311790 ATGGCTGCAAACGACAACAG 59.688 50.000 0.50 0.00 0.00 3.16 F
2382 3106 1.008538 GGCTGCAAACGACAACAGG 60.009 57.895 0.50 0.00 0.00 4.00 F
3798 4698 1.194098 CGAACAAAGCTGTCTGCAGAG 59.806 52.381 18.89 7.73 45.28 3.35 F
4517 5431 0.544697 TTTAGCAATCCCTCCGTCCC 59.455 55.000 0.00 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2719 0.037697 TACCTACGCACTGCACCAAG 60.038 55.000 1.11 0.00 0.00 3.61 R
3203 3958 1.255882 TGCCAATTCACCATGTCACC 58.744 50.000 0.00 0.00 0.00 4.02 R
4346 5246 1.775385 TCGACCATGAGGCATGACTA 58.225 50.000 0.00 0.00 43.81 2.59 R
4354 5254 4.194640 ACAAGATCAATTCGACCATGAGG 58.805 43.478 0.00 0.00 42.21 3.86 R
5604 6518 1.203052 CATGCTTGCTCGGGAATTTGT 59.797 47.619 0.00 0.00 0.00 2.83 R
6329 7263 1.075212 TGGAACAGGCATGGTCAATCA 59.925 47.619 19.38 4.11 45.63 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.390463 CGAACCAAGCGTAGAGAAAGC 59.610 52.381 0.00 0.00 0.00 3.51
34 35 0.317479 ACCAAGCGTAGAGAAAGCGT 59.683 50.000 0.00 0.00 37.69 5.07
59 62 3.252215 TGTAGTCATTTTGGTTTGCCTCG 59.748 43.478 0.00 0.00 35.27 4.63
82 85 6.788458 TCGTCTTTTTAATGTTGATCGTTTCG 59.212 34.615 0.00 0.00 0.00 3.46
83 86 6.031003 CGTCTTTTTAATGTTGATCGTTTCGG 59.969 38.462 0.00 0.00 0.00 4.30
172 175 7.575414 TTTCATTAGTGCCTTTCTGTTAACA 57.425 32.000 8.28 8.28 0.00 2.41
356 372 3.374058 GGTTACCGTTGATCTTGGACATG 59.626 47.826 5.61 0.00 0.00 3.21
358 374 3.973206 ACCGTTGATCTTGGACATGTA 57.027 42.857 0.00 0.00 0.00 2.29
446 534 6.012745 AGTTGGAAGTGCAGGAAGAAATAAT 58.987 36.000 0.00 0.00 0.00 1.28
447 535 7.175104 AGTTGGAAGTGCAGGAAGAAATAATA 58.825 34.615 0.00 0.00 0.00 0.98
448 536 7.836183 AGTTGGAAGTGCAGGAAGAAATAATAT 59.164 33.333 0.00 0.00 0.00 1.28
449 537 9.120538 GTTGGAAGTGCAGGAAGAAATAATATA 57.879 33.333 0.00 0.00 0.00 0.86
450 538 9.693739 TTGGAAGTGCAGGAAGAAATAATATAA 57.306 29.630 0.00 0.00 0.00 0.98
506 741 8.338259 CAAATTAATTCAGACGGAGGAAGTATG 58.662 37.037 0.10 0.00 32.63 2.39
511 746 3.381590 TCAGACGGAGGAAGTATGTCATG 59.618 47.826 0.00 0.00 33.11 3.07
519 754 5.352569 GGAGGAAGTATGTCATGTTGTCAAG 59.647 44.000 0.00 0.00 0.00 3.02
529 764 5.065090 TGTCATGTTGTCAAGAGAACTGTTG 59.935 40.000 10.80 5.52 35.81 3.33
547 782 4.469657 TGTTGAAGAAGGTAAAGTGCCAT 58.530 39.130 0.00 0.00 0.00 4.40
559 794 5.400485 GGTAAAGTGCCATCTAATACGTACG 59.600 44.000 15.01 15.01 0.00 3.67
560 795 4.906065 AAGTGCCATCTAATACGTACGA 57.094 40.909 24.41 6.04 0.00 3.43
561 796 4.485024 AGTGCCATCTAATACGTACGAG 57.515 45.455 24.41 8.94 0.00 4.18
564 799 5.178996 AGTGCCATCTAATACGTACGAGTAG 59.821 44.000 24.41 18.03 0.00 2.57
565 800 5.178252 GTGCCATCTAATACGTACGAGTAGA 59.822 44.000 24.41 22.13 0.00 2.59
568 803 7.134815 GCCATCTAATACGTACGAGTAGAAAA 58.865 38.462 24.41 4.91 0.00 2.29
569 804 7.806960 GCCATCTAATACGTACGAGTAGAAAAT 59.193 37.037 24.41 7.63 0.00 1.82
578 813 7.634522 ACGTACGAGTAGAAAATACATACTCC 58.365 38.462 24.41 0.00 41.46 3.85
579 814 7.074502 CGTACGAGTAGAAAATACATACTCCC 58.925 42.308 10.44 0.00 41.46 4.30
580 815 7.041508 CGTACGAGTAGAAAATACATACTCCCT 60.042 40.741 10.44 0.00 41.46 4.20
581 816 7.040473 ACGAGTAGAAAATACATACTCCCTG 57.960 40.000 6.12 0.00 41.46 4.45
582 817 5.921408 CGAGTAGAAAATACATACTCCCTGC 59.079 44.000 6.12 0.00 41.46 4.85
583 818 6.461092 CGAGTAGAAAATACATACTCCCTGCA 60.461 42.308 6.12 0.00 41.46 4.41
584 819 7.380423 AGTAGAAAATACATACTCCCTGCAT 57.620 36.000 0.00 0.00 0.00 3.96
585 820 8.492415 AGTAGAAAATACATACTCCCTGCATA 57.508 34.615 0.00 0.00 0.00 3.14
586 821 8.934697 AGTAGAAAATACATACTCCCTGCATAA 58.065 33.333 0.00 0.00 0.00 1.90
587 822 9.555727 GTAGAAAATACATACTCCCTGCATAAA 57.444 33.333 0.00 0.00 0.00 1.40
588 823 8.451908 AGAAAATACATACTCCCTGCATAAAC 57.548 34.615 0.00 0.00 0.00 2.01
589 824 8.275040 AGAAAATACATACTCCCTGCATAAACT 58.725 33.333 0.00 0.00 0.00 2.66
590 825 8.823220 AAAATACATACTCCCTGCATAAACTT 57.177 30.769 0.00 0.00 0.00 2.66
591 826 9.914834 AAAATACATACTCCCTGCATAAACTTA 57.085 29.630 0.00 0.00 0.00 2.24
592 827 9.561069 AAATACATACTCCCTGCATAAACTTAG 57.439 33.333 0.00 0.00 0.00 2.18
593 828 6.561519 ACATACTCCCTGCATAAACTTAGT 57.438 37.500 0.00 0.00 0.00 2.24
594 829 6.349300 ACATACTCCCTGCATAAACTTAGTG 58.651 40.000 0.00 0.00 0.00 2.74
595 830 6.156256 ACATACTCCCTGCATAAACTTAGTGA 59.844 38.462 0.00 0.00 0.00 3.41
596 831 5.700402 ACTCCCTGCATAAACTTAGTGAT 57.300 39.130 0.00 0.00 0.00 3.06
597 832 5.675538 ACTCCCTGCATAAACTTAGTGATC 58.324 41.667 0.00 0.00 0.00 2.92
598 833 5.426833 ACTCCCTGCATAAACTTAGTGATCT 59.573 40.000 0.00 0.00 0.00 2.75
599 834 6.611642 ACTCCCTGCATAAACTTAGTGATCTA 59.388 38.462 0.00 0.00 0.00 1.98
600 835 7.125811 ACTCCCTGCATAAACTTAGTGATCTAA 59.874 37.037 0.00 0.00 35.25 2.10
601 836 7.857456 TCCCTGCATAAACTTAGTGATCTAAA 58.143 34.615 0.00 0.00 35.98 1.85
602 837 8.494433 TCCCTGCATAAACTTAGTGATCTAAAT 58.506 33.333 0.00 0.00 35.98 1.40
603 838 8.562892 CCCTGCATAAACTTAGTGATCTAAATG 58.437 37.037 0.00 0.00 35.98 2.32
604 839 8.072567 CCTGCATAAACTTAGTGATCTAAATGC 58.927 37.037 11.89 11.89 41.76 3.56
605 840 8.737168 TGCATAAACTTAGTGATCTAAATGCT 57.263 30.769 16.24 0.00 41.83 3.79
606 841 8.830580 TGCATAAACTTAGTGATCTAAATGCTC 58.169 33.333 16.24 0.00 41.83 4.26
607 842 8.830580 GCATAAACTTAGTGATCTAAATGCTCA 58.169 33.333 11.67 0.00 40.16 4.26
666 930 9.772973 AAAAAGTCTTTGAGGTAAAGTGTTTTT 57.227 25.926 0.00 14.28 44.88 1.94
684 981 7.552330 AGTGTTTTTCAACAAATGCACCTAAAT 59.448 29.630 0.00 0.00 44.72 1.40
685 982 8.180920 GTGTTTTTCAACAAATGCACCTAAATT 58.819 29.630 0.00 0.00 44.72 1.82
721 1018 7.121168 GGTGACTCCAAAATGATGAAAGTGATA 59.879 37.037 0.00 0.00 35.97 2.15
769 1066 0.249363 GTCGGAATAAGACGGCTCCC 60.249 60.000 0.00 0.00 0.00 4.30
786 1087 2.033602 CCTGTCGGTGGGGTTTCC 59.966 66.667 0.00 0.00 0.00 3.13
804 1105 6.426327 GGTTTCCATTTTGAATTTTGTTCCG 58.574 36.000 0.00 0.00 0.00 4.30
824 1130 2.532235 GCACGACACATACGTAATCCA 58.468 47.619 0.00 0.00 42.07 3.41
862 1168 1.257155 GACGAATCACGGCCGTTTATC 59.743 52.381 32.11 24.00 45.37 1.75
874 1180 2.091152 CGTTTATCGGCTCATTGCAC 57.909 50.000 0.00 0.00 45.15 4.57
902 1212 3.207669 CCGTAGGCCGTCGTAGCT 61.208 66.667 18.11 0.00 46.14 3.32
903 1213 2.327244 CGTAGGCCGTCGTAGCTC 59.673 66.667 13.04 0.00 0.00 4.09
904 1214 2.327244 GTAGGCCGTCGTAGCTCG 59.673 66.667 0.00 0.00 41.41 5.03
908 1218 4.549516 GCCGTCGTAGCTCGGGAC 62.550 72.222 12.92 7.52 42.58 4.46
972 1290 4.373116 ACGCACACTACTGCCCCG 62.373 66.667 0.00 0.00 33.18 5.73
1660 2375 4.778143 CAGGCCTCGTTTCCCCGG 62.778 72.222 0.00 0.00 0.00 5.73
1676 2391 2.280552 CGGGTTCGGAAGGTCTCCA 61.281 63.158 0.00 0.00 45.74 3.86
1695 2410 3.631686 TCCACGCATTTGGAGGATTATTG 59.368 43.478 0.00 0.00 41.00 1.90
1701 2416 4.524328 GCATTTGGAGGATTATTGGTAGGG 59.476 45.833 0.00 0.00 0.00 3.53
1725 2440 1.675552 CGTCTGTGGTTCAGGGTTTT 58.324 50.000 0.00 0.00 43.76 2.43
1753 2468 1.452833 GCAATGGAGGTGGAGAGCC 60.453 63.158 0.00 0.00 0.00 4.70
1819 2534 2.185310 CTGCGGGTAGGGTGAAAGCT 62.185 60.000 0.00 0.00 0.00 3.74
1831 2546 0.105964 TGAAAGCTGTACGTGGCAGT 59.894 50.000 18.66 7.25 36.42 4.40
1857 2577 4.481112 GGCCTTGATTGCGTGCGG 62.481 66.667 0.00 0.00 0.00 5.69
1964 2684 0.581529 AATCGCGATGGTATTGCACG 59.418 50.000 24.47 0.00 39.73 5.34
1977 2697 5.069914 TGGTATTGCACGGTATAGTGAGATT 59.930 40.000 0.88 0.00 44.43 2.40
1981 2701 3.242969 TGCACGGTATAGTGAGATTCGTC 60.243 47.826 0.88 0.00 44.43 4.20
1999 2719 2.407361 CGTCGATGTGGTTAACTGTGTC 59.593 50.000 5.42 0.00 0.00 3.67
2001 2721 4.056050 GTCGATGTGGTTAACTGTGTCTT 58.944 43.478 5.42 0.00 0.00 3.01
2003 2723 3.186409 CGATGTGGTTAACTGTGTCTTGG 59.814 47.826 5.42 0.00 0.00 3.61
2004 2724 3.637911 TGTGGTTAACTGTGTCTTGGT 57.362 42.857 5.42 0.00 0.00 3.67
2005 2725 3.275143 TGTGGTTAACTGTGTCTTGGTG 58.725 45.455 5.42 0.00 0.00 4.17
2006 2726 2.032924 GTGGTTAACTGTGTCTTGGTGC 59.967 50.000 5.42 0.00 0.00 5.01
2007 2727 2.294074 GGTTAACTGTGTCTTGGTGCA 58.706 47.619 5.42 0.00 0.00 4.57
2008 2728 2.290641 GGTTAACTGTGTCTTGGTGCAG 59.709 50.000 5.42 0.00 35.31 4.41
2009 2729 2.943033 GTTAACTGTGTCTTGGTGCAGT 59.057 45.455 0.00 0.00 43.13 4.40
2010 2730 1.382522 AACTGTGTCTTGGTGCAGTG 58.617 50.000 0.00 0.00 40.79 3.66
2011 2731 1.097547 ACTGTGTCTTGGTGCAGTGC 61.098 55.000 8.58 8.58 40.24 4.40
2037 2757 2.844654 ATTATTGTGGGATGGGTGCA 57.155 45.000 0.00 0.00 0.00 4.57
2050 2770 0.886490 GGGTGCAGGTCACACTTCAG 60.886 60.000 0.00 0.00 45.59 3.02
2192 2915 6.655003 ACTGTTGGAGAACATGTATTTACTGG 59.345 38.462 0.00 0.00 41.33 4.00
2195 2918 6.877668 TGGAGAACATGTATTTACTGGGTA 57.122 37.500 0.00 0.00 0.00 3.69
2199 2922 7.924947 GGAGAACATGTATTTACTGGGTAGTAC 59.075 40.741 0.00 0.00 39.06 2.73
2212 2935 2.431782 GGGTAGTACACTATTTGGGCGA 59.568 50.000 2.06 0.00 0.00 5.54
2310 3034 3.457610 AAACCTTGTGAAAGTGGCATG 57.542 42.857 0.00 0.00 0.00 4.06
2354 3078 6.211785 GTCTAACTTGCTAGGGCCTAATATCT 59.788 42.308 15.43 0.66 37.74 1.98
2363 3087 7.570232 TGCTAGGGCCTAATATCTTCATATGAT 59.430 37.037 15.43 0.00 37.74 2.45
2374 3098 3.313249 TCTTCATATGATGGCTGCAAACG 59.687 43.478 16.26 0.00 0.00 3.60
2381 3105 0.311790 ATGGCTGCAAACGACAACAG 59.688 50.000 0.50 0.00 0.00 3.16
2382 3106 1.008538 GGCTGCAAACGACAACAGG 60.009 57.895 0.50 0.00 0.00 4.00
2395 3119 2.485814 GACAACAGGCAGACCATTCTTC 59.514 50.000 0.00 0.00 39.06 2.87
2508 3232 3.317406 ACACCATGCATATCCTGAGGTA 58.683 45.455 0.00 0.00 0.00 3.08
2684 3408 5.180117 CCTATATGTGTTGCCTATGTGCTTC 59.820 44.000 0.00 0.00 0.00 3.86
2752 3476 4.097286 TGTTGTTTCTTGTTGCCTCCTAAC 59.903 41.667 0.00 0.00 0.00 2.34
2753 3477 3.892284 TGTTTCTTGTTGCCTCCTAACA 58.108 40.909 0.00 0.00 36.34 2.41
2756 3487 3.788227 TCTTGTTGCCTCCTAACACAT 57.212 42.857 0.00 0.00 37.73 3.21
2779 3510 7.890127 ACATTTACAATTTCAGGAGATCAGGAA 59.110 33.333 0.00 0.00 0.00 3.36
2791 3522 5.104735 AGGAGATCAGGAAAACAGGATACAC 60.105 44.000 0.00 0.00 41.41 2.90
2835 3566 3.963665 TGTTAACACTTGCATGCTGTTC 58.036 40.909 22.59 12.82 30.76 3.18
2947 3678 4.341806 TGCATTGGTGACTGTCATTTCTTT 59.658 37.500 14.37 0.00 0.00 2.52
2978 3709 6.786122 ACAGTTACCAACTTACCATACCATT 58.214 36.000 0.00 0.00 40.46 3.16
2993 3724 8.489676 ACCATACCATTCAATTATTATGGCAA 57.510 30.769 6.64 0.00 42.04 4.52
3040 3771 1.202903 ACTAGAGATGATACCCCGCGT 60.203 52.381 4.92 0.00 0.00 6.01
3203 3958 5.690997 ATTGAGAATGAGTAGCATGCATG 57.309 39.130 22.70 22.70 37.28 4.06
3375 4273 6.868339 GGAAGTTTTATCCATTGTTTCCTGTG 59.132 38.462 0.00 0.00 36.92 3.66
3695 4594 8.526218 AGAGCACGACAACATAATATGATAAG 57.474 34.615 7.33 0.00 0.00 1.73
3700 4599 9.636965 CACGACAACATAATATGATAAGTTGTG 57.363 33.333 12.72 13.46 43.67 3.33
3706 4605 8.962884 ACATAATATGATAAGTTGTGCACTCA 57.037 30.769 19.41 12.42 32.94 3.41
3721 4620 6.954944 TGTGCACTCATTAACTTAAGTTCAC 58.045 36.000 23.76 20.53 39.31 3.18
3732 4631 6.694877 AACTTAAGTTCACTTTCCCAACTC 57.305 37.500 15.22 0.00 37.40 3.01
3756 4656 2.172293 GCAGTTCAAGATGAGGAGGGAT 59.828 50.000 0.00 0.00 0.00 3.85
3758 4658 2.776536 AGTTCAAGATGAGGAGGGATGG 59.223 50.000 0.00 0.00 0.00 3.51
3798 4698 1.194098 CGAACAAAGCTGTCTGCAGAG 59.806 52.381 18.89 7.73 45.28 3.35
3901 4801 3.760738 TGCCAGTTGATTAACATGACCA 58.239 40.909 0.00 0.00 39.30 4.02
3978 4878 4.142038 GGTCCAAGTTGTAGAATTGTGGT 58.858 43.478 1.45 0.00 0.00 4.16
4000 4900 7.119262 GTGGTTTATGTTCCGCATAAGCTATAT 59.881 37.037 11.51 0.00 46.88 0.86
4001 4901 8.315482 TGGTTTATGTTCCGCATAAGCTATATA 58.685 33.333 11.51 0.00 46.88 0.86
4002 4902 9.326413 GGTTTATGTTCCGCATAAGCTATATAT 57.674 33.333 11.51 0.00 46.88 0.86
4161 5061 3.195610 TCACCAAGTCGATTGCTACTCAT 59.804 43.478 0.00 0.00 37.60 2.90
4208 5108 7.500141 AGGAACTTGTTTAATTTGAGCACAAT 58.500 30.769 0.00 0.00 32.30 2.71
4346 5246 8.951614 TCCTAGCAGGTATGTTATGTATACTT 57.048 34.615 4.17 0.08 36.53 2.24
4364 5278 2.159043 ACTTAGTCATGCCTCATGGTCG 60.159 50.000 6.92 0.00 41.66 4.79
4411 5325 1.448013 GTAGCTGCCCAGTCCGAAC 60.448 63.158 0.00 0.00 0.00 3.95
4426 5340 4.582656 AGTCCGAACACCAATTGAAATTCA 59.417 37.500 7.12 0.00 0.00 2.57
4430 5344 5.345741 CCGAACACCAATTGAAATTCATGTC 59.654 40.000 7.12 0.00 0.00 3.06
4434 5348 6.400568 ACACCAATTGAAATTCATGTCCATC 58.599 36.000 7.12 0.00 0.00 3.51
4440 5354 9.811995 CAATTGAAATTCATGTCCATCTAATGT 57.188 29.630 0.00 0.00 0.00 2.71
4503 5417 9.533253 AAATGTTCAACATAGCCAATATTTAGC 57.467 29.630 2.67 0.00 37.97 3.09
4504 5418 7.637631 TGTTCAACATAGCCAATATTTAGCA 57.362 32.000 9.34 0.00 0.00 3.49
4505 5419 8.060931 TGTTCAACATAGCCAATATTTAGCAA 57.939 30.769 9.34 0.00 0.00 3.91
4506 5420 8.694540 TGTTCAACATAGCCAATATTTAGCAAT 58.305 29.630 9.34 0.00 0.00 3.56
4507 5421 9.185192 GTTCAACATAGCCAATATTTAGCAATC 57.815 33.333 9.34 0.00 0.00 2.67
4508 5422 7.885297 TCAACATAGCCAATATTTAGCAATCC 58.115 34.615 9.34 0.00 0.00 3.01
4509 5423 6.840780 ACATAGCCAATATTTAGCAATCCC 57.159 37.500 9.34 0.00 0.00 3.85
4510 5424 6.555711 ACATAGCCAATATTTAGCAATCCCT 58.444 36.000 9.34 0.00 0.00 4.20
4511 5425 6.660949 ACATAGCCAATATTTAGCAATCCCTC 59.339 38.462 9.34 0.00 0.00 4.30
4512 5426 4.411013 AGCCAATATTTAGCAATCCCTCC 58.589 43.478 9.34 0.00 0.00 4.30
4513 5427 3.191371 GCCAATATTTAGCAATCCCTCCG 59.809 47.826 2.93 0.00 0.00 4.63
4514 5428 4.398319 CCAATATTTAGCAATCCCTCCGT 58.602 43.478 0.00 0.00 0.00 4.69
4515 5429 4.455877 CCAATATTTAGCAATCCCTCCGTC 59.544 45.833 0.00 0.00 0.00 4.79
4516 5430 2.640316 ATTTAGCAATCCCTCCGTCC 57.360 50.000 0.00 0.00 0.00 4.79
4517 5431 0.544697 TTTAGCAATCCCTCCGTCCC 59.455 55.000 0.00 0.00 0.00 4.46
4518 5432 0.619255 TTAGCAATCCCTCCGTCCCA 60.619 55.000 0.00 0.00 0.00 4.37
4519 5433 0.619255 TAGCAATCCCTCCGTCCCAA 60.619 55.000 0.00 0.00 0.00 4.12
4520 5434 1.001393 GCAATCCCTCCGTCCCAAA 60.001 57.895 0.00 0.00 0.00 3.28
4521 5435 0.610785 GCAATCCCTCCGTCCCAAAA 60.611 55.000 0.00 0.00 0.00 2.44
4522 5436 1.959989 GCAATCCCTCCGTCCCAAAAT 60.960 52.381 0.00 0.00 0.00 1.82
4523 5437 2.685522 GCAATCCCTCCGTCCCAAAATA 60.686 50.000 0.00 0.00 0.00 1.40
4524 5438 3.626930 CAATCCCTCCGTCCCAAAATAA 58.373 45.455 0.00 0.00 0.00 1.40
4525 5439 3.577805 ATCCCTCCGTCCCAAAATAAG 57.422 47.619 0.00 0.00 0.00 1.73
4526 5440 2.271777 TCCCTCCGTCCCAAAATAAGT 58.728 47.619 0.00 0.00 0.00 2.24
4527 5441 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4528 5442 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4529 5443 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4530 5444 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4531 5445 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4532 5446 3.581332 TCCGTCCCAAAATAAGTGTCTCT 59.419 43.478 0.00 0.00 0.00 3.10
4533 5447 4.773674 TCCGTCCCAAAATAAGTGTCTCTA 59.226 41.667 0.00 0.00 0.00 2.43
4534 5448 5.246656 TCCGTCCCAAAATAAGTGTCTCTAA 59.753 40.000 0.00 0.00 0.00 2.10
4535 5449 5.350640 CCGTCCCAAAATAAGTGTCTCTAAC 59.649 44.000 0.00 0.00 0.00 2.34
4536 5450 5.929992 CGTCCCAAAATAAGTGTCTCTAACA 59.070 40.000 0.00 0.00 34.78 2.41
4551 5465 8.004087 TGTCTCTAACACTAGTACAAAGTTGT 57.996 34.615 0.00 1.75 37.84 3.32
4552 5466 9.123902 TGTCTCTAACACTAGTACAAAGTTGTA 57.876 33.333 0.00 0.00 36.39 2.41
4565 5479 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
4566 5480 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
4567 5481 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
4568 5482 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
4569 5483 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
4570 5484 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
4571 5485 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
4572 5486 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
4573 5487 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
4574 5488 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
4575 5489 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
4576 5490 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
4577 5491 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
4578 5492 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
4579 5493 5.574188 AGCTTGAGACACTTATTTTGGGAT 58.426 37.500 0.00 0.00 0.00 3.85
4580 5494 5.416952 AGCTTGAGACACTTATTTTGGGATG 59.583 40.000 0.00 0.00 0.00 3.51
4581 5495 5.393461 GCTTGAGACACTTATTTTGGGATGG 60.393 44.000 0.00 0.00 0.00 3.51
4582 5496 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
4583 5497 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
4584 5498 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
4585 5499 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
4586 5500 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
4587 5501 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
4588 5502 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
4589 5503 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
4590 5504 5.132816 ACTTATTTTGGGATGGAGGGAGTAG 59.867 44.000 0.00 0.00 0.00 2.57
4672 5586 7.265673 TCATAACTTGCCTATTCACTGTCTAC 58.734 38.462 0.00 0.00 0.00 2.59
4676 5590 4.737855 TGCCTATTCACTGTCTACCTTC 57.262 45.455 0.00 0.00 0.00 3.46
4734 5648 7.062749 TGACAAGAATCCTACAGTACAAACT 57.937 36.000 0.00 0.00 35.91 2.66
5604 6518 4.821805 GTCAAGACAAACAAGATTCCCAGA 59.178 41.667 0.00 0.00 0.00 3.86
5889 6803 6.991531 CAGGCTCTTCAGCTCTATATCTTTTT 59.008 38.462 0.00 0.00 46.03 1.94
5931 6845 4.395581 CTTCAACAAGTTGGAGATCACG 57.604 45.455 14.70 0.00 46.66 4.35
6009 6923 1.448540 CGTCCTGACTGGCACCATC 60.449 63.158 0.00 0.00 35.26 3.51
6080 6994 5.357032 TGAAGATCGACTGATGTAGCAACTA 59.643 40.000 0.00 0.00 34.09 2.24
6132 7046 0.034337 TCTCCCGGACAAGGTTTTCG 59.966 55.000 0.73 0.00 0.00 3.46
6164 7098 1.077265 ATGGTGCTGGAAACTGGGG 59.923 57.895 0.00 0.00 0.00 4.96
6198 7132 6.782494 GGGATTCCATGGTTTTGGTAGAATAT 59.218 38.462 12.58 0.00 38.01 1.28
6199 7133 7.255942 GGGATTCCATGGTTTTGGTAGAATATG 60.256 40.741 12.58 0.00 38.01 1.78
6222 7156 4.021916 TGTAGCCTGGTAGGAGTAAGAAC 58.978 47.826 0.00 0.00 37.67 3.01
6266 7200 7.542477 TGTTGAAGAGAGAATTTGATACTCGTC 59.458 37.037 0.00 0.00 36.92 4.20
6283 7217 2.159240 TCGTCGCAGATTAGCATGTCTT 60.159 45.455 0.00 0.00 40.67 3.01
6284 7218 2.034254 CGTCGCAGATTAGCATGTCTTG 60.034 50.000 0.00 0.00 40.67 3.02
6329 7263 3.368531 GCTCCTGTACTGTTTCGGATCTT 60.369 47.826 0.00 0.00 0.00 2.40
6341 7275 2.564771 TCGGATCTTGATTGACCATGC 58.435 47.619 0.00 0.00 0.00 4.06
6355 7289 2.299867 GACCATGCCTGTTCCATTTGTT 59.700 45.455 0.00 0.00 0.00 2.83
6357 7291 3.244181 ACCATGCCTGTTCCATTTGTTTC 60.244 43.478 0.00 0.00 0.00 2.78
6358 7292 3.244146 CCATGCCTGTTCCATTTGTTTCA 60.244 43.478 0.00 0.00 0.00 2.69
6360 7294 3.992643 TGCCTGTTCCATTTGTTTCATG 58.007 40.909 0.00 0.00 0.00 3.07
6362 7296 3.989817 GCCTGTTCCATTTGTTTCATGTC 59.010 43.478 0.00 0.00 0.00 3.06
6363 7297 4.501229 GCCTGTTCCATTTGTTTCATGTCA 60.501 41.667 0.00 0.00 0.00 3.58
6364 7298 5.786311 CCTGTTCCATTTGTTTCATGTCAT 58.214 37.500 0.00 0.00 0.00 3.06
6365 7299 6.572119 GCCTGTTCCATTTGTTTCATGTCATA 60.572 38.462 0.00 0.00 0.00 2.15
6377 7311 6.148645 TGTTTCATGTCATATTACACGCAGTT 59.851 34.615 0.00 0.00 41.61 3.16
6393 7335 3.544834 CGCAGTTCGCTGGATATTTCTTG 60.545 47.826 0.00 0.00 45.10 3.02
6402 7344 5.221028 CGCTGGATATTTCTTGGTGCATAAA 60.221 40.000 0.00 0.00 0.00 1.40
6415 7357 4.165779 GGTGCATAAATTTCTCGTTGGTG 58.834 43.478 0.00 0.00 0.00 4.17
6445 7387 5.468540 TTCATTCGATAGTACCCTGATGG 57.531 43.478 0.00 0.00 37.54 3.51
6446 7388 3.258372 TCATTCGATAGTACCCTGATGGC 59.742 47.826 0.00 0.00 35.43 4.40
6449 7391 1.629043 GATAGTACCCTGATGGCGGA 58.371 55.000 0.00 0.00 37.83 5.54
6450 7392 1.546476 GATAGTACCCTGATGGCGGAG 59.454 57.143 0.00 0.00 37.83 4.63
6451 7393 0.469331 TAGTACCCTGATGGCGGAGG 60.469 60.000 0.00 0.00 37.83 4.30
6453 7395 1.760875 TACCCTGATGGCGGAGGAC 60.761 63.158 0.00 0.00 37.83 3.85
6454 7396 2.238319 TACCCTGATGGCGGAGGACT 62.238 60.000 0.00 0.00 37.83 3.85
6455 7397 1.457643 CCCTGATGGCGGAGGACTA 60.458 63.158 0.00 0.00 0.00 2.59
6456 7398 1.048724 CCCTGATGGCGGAGGACTAA 61.049 60.000 0.00 0.00 0.00 2.24
6467 7588 4.457949 GGCGGAGGACTAAGAAAATTTCAA 59.542 41.667 8.55 0.00 0.00 2.69
6569 7690 4.558538 ACTGAGAATGCAGTGAAAACAC 57.441 40.909 0.00 0.00 46.72 3.32
6570 7691 3.002656 ACTGAGAATGCAGTGAAAACACG 59.997 43.478 0.00 0.00 46.72 4.49
6571 7692 2.286950 TGAGAATGCAGTGAAAACACGC 60.287 45.455 0.00 0.00 0.00 5.34
6573 7694 3.138304 AGAATGCAGTGAAAACACGCTA 58.862 40.909 0.00 0.00 0.00 4.26
6589 7736 2.891580 ACGCTAGAGTTCTGACTGGAAA 59.108 45.455 0.00 0.00 35.88 3.13
6605 7752 1.939934 GGAAAGCCTTTGTTTTGCACC 59.060 47.619 0.00 0.00 34.06 5.01
6618 7765 2.502510 GCACCGCGCATTCACAAG 60.503 61.111 8.75 0.00 41.79 3.16
6631 7778 3.973206 TTCACAAGTGACCACGGATAT 57.027 42.857 1.73 0.00 39.66 1.63
6637 7784 3.028094 AGTGACCACGGATATACTGGT 57.972 47.619 8.36 8.36 41.19 4.00
6757 7904 0.255604 TGATCACCCCGCACATCATT 59.744 50.000 0.00 0.00 0.00 2.57
6763 7910 1.452651 CCCGCACATCATTGCCTCT 60.453 57.895 0.00 0.00 39.53 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.594654 CACTACGCTTTCTCTACGCTTG 59.405 50.000 0.00 0.00 0.00 4.01
32 33 5.144359 GCAAACCAAAATGACTACACTACG 58.856 41.667 0.00 0.00 0.00 3.51
34 35 5.381757 AGGCAAACCAAAATGACTACACTA 58.618 37.500 0.00 0.00 39.06 2.74
59 62 6.854381 ACCGAAACGATCAACATTAAAAAGAC 59.146 34.615 0.00 0.00 0.00 3.01
82 85 4.425577 AAAGCGATCATTCAAAGTCACC 57.574 40.909 0.00 0.00 0.00 4.02
83 86 5.451908 TCAAAAGCGATCATTCAAAGTCAC 58.548 37.500 0.00 0.00 0.00 3.67
328 344 5.536916 TCCAAGATCAACGGTAACCAAATTT 59.463 36.000 0.00 0.00 0.00 1.82
336 352 4.280436 ACATGTCCAAGATCAACGGTAA 57.720 40.909 0.00 0.00 0.00 2.85
338 354 2.859165 ACATGTCCAAGATCAACGGT 57.141 45.000 0.00 0.00 0.00 4.83
356 372 4.151157 CAGGCGCCGGTAATAGTTTATTAC 59.849 45.833 23.20 9.45 46.11 1.89
358 374 3.135994 CAGGCGCCGGTAATAGTTTATT 58.864 45.455 23.20 0.00 0.00 1.40
367 386 4.728102 CGACACAGGCGCCGGTAA 62.728 66.667 31.75 0.00 0.00 2.85
446 534 7.383687 ACGAGTGTCTCCAATTCTTTGTTATA 58.616 34.615 0.00 0.00 0.00 0.98
447 535 6.231211 ACGAGTGTCTCCAATTCTTTGTTAT 58.769 36.000 0.00 0.00 0.00 1.89
448 536 5.607477 ACGAGTGTCTCCAATTCTTTGTTA 58.393 37.500 0.00 0.00 0.00 2.41
449 537 4.451900 ACGAGTGTCTCCAATTCTTTGTT 58.548 39.130 0.00 0.00 0.00 2.83
450 538 4.073293 ACGAGTGTCTCCAATTCTTTGT 57.927 40.909 0.00 0.00 0.00 2.83
454 689 4.202264 ACTGAAACGAGTGTCTCCAATTCT 60.202 41.667 0.00 0.00 0.00 2.40
461 696 3.079960 TGTCACTGAAACGAGTGTCTC 57.920 47.619 0.00 0.00 43.38 3.36
464 699 6.671614 TTAATTTGTCACTGAAACGAGTGT 57.328 33.333 0.00 0.00 43.38 3.55
478 713 6.371825 ACTTCCTCCGTCTGAATTAATTTGTC 59.628 38.462 1.43 0.00 0.00 3.18
506 741 5.294306 TCAACAGTTCTCTTGACAACATGAC 59.706 40.000 0.00 0.00 0.00 3.06
511 746 6.422776 TTCTTCAACAGTTCTCTTGACAAC 57.577 37.500 0.00 0.00 0.00 3.32
519 754 6.511929 GCACTTTACCTTCTTCAACAGTTCTC 60.512 42.308 0.00 0.00 0.00 2.87
529 764 7.042658 CGTATTAGATGGCACTTTACCTTCTTC 60.043 40.741 3.85 0.00 40.88 2.87
559 794 6.817184 TGCAGGGAGTATGTATTTTCTACTC 58.183 40.000 0.00 0.00 40.29 2.59
560 795 6.808321 TGCAGGGAGTATGTATTTTCTACT 57.192 37.500 0.00 0.00 0.00 2.57
561 796 9.555727 TTTATGCAGGGAGTATGTATTTTCTAC 57.444 33.333 0.00 0.00 0.00 2.59
564 799 8.451908 AGTTTATGCAGGGAGTATGTATTTTC 57.548 34.615 0.00 0.00 0.00 2.29
565 800 8.823220 AAGTTTATGCAGGGAGTATGTATTTT 57.177 30.769 0.00 0.00 0.00 1.82
568 803 8.150945 CACTAAGTTTATGCAGGGAGTATGTAT 58.849 37.037 0.00 0.00 0.00 2.29
569 804 7.343574 TCACTAAGTTTATGCAGGGAGTATGTA 59.656 37.037 0.00 0.00 0.00 2.29
570 805 6.156256 TCACTAAGTTTATGCAGGGAGTATGT 59.844 38.462 0.00 0.00 0.00 2.29
571 806 6.582636 TCACTAAGTTTATGCAGGGAGTATG 58.417 40.000 0.00 0.00 0.00 2.39
572 807 6.808321 TCACTAAGTTTATGCAGGGAGTAT 57.192 37.500 0.00 0.00 0.00 2.12
573 808 6.611642 AGATCACTAAGTTTATGCAGGGAGTA 59.388 38.462 0.00 0.00 0.00 2.59
574 809 5.426833 AGATCACTAAGTTTATGCAGGGAGT 59.573 40.000 0.00 0.00 0.00 3.85
575 810 5.923204 AGATCACTAAGTTTATGCAGGGAG 58.077 41.667 0.00 0.00 0.00 4.30
576 811 5.957771 AGATCACTAAGTTTATGCAGGGA 57.042 39.130 0.00 0.00 0.00 4.20
577 812 8.562892 CATTTAGATCACTAAGTTTATGCAGGG 58.437 37.037 0.00 0.00 39.36 4.45
578 813 8.072567 GCATTTAGATCACTAAGTTTATGCAGG 58.927 37.037 14.17 0.00 42.47 4.85
579 814 8.834465 AGCATTTAGATCACTAAGTTTATGCAG 58.166 33.333 18.09 0.00 43.77 4.41
580 815 8.737168 AGCATTTAGATCACTAAGTTTATGCA 57.263 30.769 18.09 0.00 43.77 3.96
581 816 8.830580 TGAGCATTTAGATCACTAAGTTTATGC 58.169 33.333 12.46 12.46 42.82 3.14
641 876 9.419297 GAAAAACACTTTACCTCAAAGACTTTT 57.581 29.630 0.00 6.05 45.62 2.27
663 927 9.780413 GAAAAATTTAGGTGCATTTGTTGAAAA 57.220 25.926 0.00 0.00 0.00 2.29
666 930 8.729805 AAGAAAAATTTAGGTGCATTTGTTGA 57.270 26.923 0.00 0.00 0.00 3.18
721 1018 0.991920 ATGGTTCCCGTCAACCTCAT 59.008 50.000 12.61 0.00 45.54 2.90
747 1044 0.460311 AGCCGTCTTATTCCGACCTG 59.540 55.000 0.00 0.00 0.00 4.00
769 1066 2.033602 GGAAACCCCACCGACAGG 59.966 66.667 0.00 0.00 45.13 4.00
786 1087 4.208047 TCGTGCGGAACAAAATTCAAAATG 59.792 37.500 0.00 0.00 0.00 2.32
804 1105 2.532235 TGGATTACGTATGTGTCGTGC 58.468 47.619 0.00 0.00 41.62 5.34
824 1130 6.978343 TTCGTCGACATAATGAAAGGAAAT 57.022 33.333 17.16 0.00 0.00 2.17
838 1144 2.126228 GGCCGTGATTCGTCGACA 60.126 61.111 17.16 0.00 37.94 4.35
874 1180 1.745489 GCCTACGGAAGGGTGCAAG 60.745 63.158 8.04 0.00 46.65 4.01
908 1218 4.366684 GCCCTGGTGGTGGGGAAG 62.367 72.222 1.80 0.00 45.18 3.46
936 1246 1.740025 GTGCCGAGAAGAGAAAATGGG 59.260 52.381 0.00 0.00 0.00 4.00
939 1249 1.079503 GCGTGCCGAGAAGAGAAAAT 58.920 50.000 0.00 0.00 0.00 1.82
940 1250 0.249699 TGCGTGCCGAGAAGAGAAAA 60.250 50.000 0.00 0.00 0.00 2.29
957 1275 3.901797 AAGCGGGGCAGTAGTGTGC 62.902 63.158 0.00 0.00 43.19 4.57
959 1277 1.889530 GAGAAGCGGGGCAGTAGTGT 61.890 60.000 0.00 0.00 0.00 3.55
960 1278 1.153549 GAGAAGCGGGGCAGTAGTG 60.154 63.158 0.00 0.00 0.00 2.74
961 1279 2.359967 GGAGAAGCGGGGCAGTAGT 61.360 63.158 0.00 0.00 0.00 2.73
962 1280 2.501610 GGAGAAGCGGGGCAGTAG 59.498 66.667 0.00 0.00 0.00 2.57
963 1281 3.081409 GGGAGAAGCGGGGCAGTA 61.081 66.667 0.00 0.00 0.00 2.74
985 1303 2.202797 CATGTCGGGTGAGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
993 1311 4.891727 GCGATCGCCATGTCGGGT 62.892 66.667 29.48 0.00 38.24 5.28
1035 1353 1.764454 GAGGAAGAGGGGGAGGAGC 60.764 68.421 0.00 0.00 0.00 4.70
1068 1386 4.083862 GGGGTGGAGACGAGGCAC 62.084 72.222 0.00 0.00 0.00 5.01
1646 2361 4.340246 AACCCGGGGAAACGAGGC 62.340 66.667 27.92 0.00 35.47 4.70
1668 2383 2.066340 TCCAAATGCGTGGAGACCT 58.934 52.632 0.00 0.00 42.97 3.85
1676 2391 3.631250 ACCAATAATCCTCCAAATGCGT 58.369 40.909 0.00 0.00 0.00 5.24
1695 2410 3.001406 ACAGACGCACCCCCTACC 61.001 66.667 0.00 0.00 0.00 3.18
1701 2416 2.110213 TGAACCACAGACGCACCC 59.890 61.111 0.00 0.00 0.00 4.61
1725 2440 0.325933 CCTCCATTGCTCAGGTCACA 59.674 55.000 0.00 0.00 0.00 3.58
1753 2468 4.790766 GCCAGCATAAAATCCAGACATTCG 60.791 45.833 0.00 0.00 0.00 3.34
1806 2521 2.334838 CACGTACAGCTTTCACCCTAC 58.665 52.381 0.00 0.00 0.00 3.18
1841 2556 1.917782 TAACCGCACGCAATCAAGGC 61.918 55.000 0.00 0.00 0.00 4.35
1842 2557 0.519519 TTAACCGCACGCAATCAAGG 59.480 50.000 0.00 0.00 0.00 3.61
1843 2558 2.542766 ATTAACCGCACGCAATCAAG 57.457 45.000 0.00 0.00 0.00 3.02
1857 2577 3.608073 GCACCATGCTCGACAAAATTAAC 59.392 43.478 0.00 0.00 40.96 2.01
1880 2600 2.783288 CGAGGAGCCTAACCCCGAC 61.783 68.421 0.00 0.00 0.00 4.79
1964 2684 5.147865 CACATCGACGAATCTCACTATACC 58.852 45.833 0.00 0.00 0.00 2.73
1977 2697 2.034939 ACACAGTTAACCACATCGACGA 59.965 45.455 0.00 0.00 0.00 4.20
1981 2701 3.186409 CCAAGACACAGTTAACCACATCG 59.814 47.826 0.88 0.00 0.00 3.84
1999 2719 0.037697 TACCTACGCACTGCACCAAG 60.038 55.000 1.11 0.00 0.00 3.61
2001 2721 0.611200 AATACCTACGCACTGCACCA 59.389 50.000 1.11 0.00 0.00 4.17
2003 2723 3.869246 ACAATAATACCTACGCACTGCAC 59.131 43.478 1.11 0.00 0.00 4.57
2004 2724 3.868661 CACAATAATACCTACGCACTGCA 59.131 43.478 1.11 0.00 0.00 4.41
2005 2725 3.247648 CCACAATAATACCTACGCACTGC 59.752 47.826 0.00 0.00 0.00 4.40
2006 2726 3.807622 CCCACAATAATACCTACGCACTG 59.192 47.826 0.00 0.00 0.00 3.66
2007 2727 3.707611 TCCCACAATAATACCTACGCACT 59.292 43.478 0.00 0.00 0.00 4.40
2008 2728 4.062677 TCCCACAATAATACCTACGCAC 57.937 45.455 0.00 0.00 0.00 5.34
2009 2729 4.504165 CCATCCCACAATAATACCTACGCA 60.504 45.833 0.00 0.00 0.00 5.24
2010 2730 4.000988 CCATCCCACAATAATACCTACGC 58.999 47.826 0.00 0.00 0.00 4.42
2011 2731 4.041198 ACCCATCCCACAATAATACCTACG 59.959 45.833 0.00 0.00 0.00 3.51
2050 2770 3.686016 TCCCCTGCTTATCAACACTTTC 58.314 45.455 0.00 0.00 0.00 2.62
2158 2881 5.304686 TGTTCTCCAACAGTACAAAGGAT 57.695 39.130 0.00 0.00 37.61 3.24
2170 2893 5.944007 ACCCAGTAAATACATGTTCTCCAAC 59.056 40.000 2.30 0.00 0.00 3.77
2192 2915 3.806625 TCGCCCAAATAGTGTACTACC 57.193 47.619 0.00 0.00 0.00 3.18
2195 2918 3.945285 CCAAATCGCCCAAATAGTGTACT 59.055 43.478 0.00 0.00 0.00 2.73
2199 2922 2.099405 ACCCAAATCGCCCAAATAGTG 58.901 47.619 0.00 0.00 0.00 2.74
2212 2935 9.239551 GTACCTAACTGAATTTTCTACCCAAAT 57.760 33.333 0.00 0.00 0.00 2.32
2287 3010 2.093764 TGCCACTTTCACAAGGTTTTGG 60.094 45.455 0.00 0.00 38.66 3.28
2310 3034 4.113354 AGACGAAGACAACACTTCAGTTC 58.887 43.478 0.00 0.00 44.28 3.01
2354 3078 3.065233 GTCGTTTGCAGCCATCATATGAA 59.935 43.478 9.99 0.00 0.00 2.57
2363 3087 1.723608 CCTGTTGTCGTTTGCAGCCA 61.724 55.000 0.00 0.00 0.00 4.75
2374 3098 2.191128 AGAATGGTCTGCCTGTTGTC 57.809 50.000 0.00 0.00 35.27 3.18
2381 3105 7.099120 ACATTTTAATTGAAGAATGGTCTGCC 58.901 34.615 0.00 0.00 34.61 4.85
2382 3106 8.538409 AACATTTTAATTGAAGAATGGTCTGC 57.462 30.769 0.00 0.00 34.61 4.26
2395 3119 7.182761 TGTTGCCGTTTCAAACATTTTAATTG 58.817 30.769 0.22 0.00 0.00 2.32
2564 3288 9.077885 ACAAGAGAACCAAATGAGCTTAAAATA 57.922 29.630 0.00 0.00 0.00 1.40
2684 3408 1.855360 GGCTTCTTCAAGTAGATCGCG 59.145 52.381 0.00 0.00 31.45 5.87
2752 3476 7.337689 TCCTGATCTCCTGAAATTGTAAATGTG 59.662 37.037 0.00 0.00 0.00 3.21
2753 3477 7.405292 TCCTGATCTCCTGAAATTGTAAATGT 58.595 34.615 0.00 0.00 0.00 2.71
2756 3487 8.576442 GTTTTCCTGATCTCCTGAAATTGTAAA 58.424 33.333 0.00 0.00 0.00 2.01
2835 3566 2.223249 CGTCAATTTAATGGCACCGGAG 60.223 50.000 9.46 0.00 0.00 4.63
2947 3678 4.282703 GGTAAGTTGGTAACTGTCTCTCCA 59.717 45.833 0.00 0.00 41.91 3.86
2988 3719 7.231722 AGTTTGGTTATACAACTGTAATTGCCA 59.768 33.333 0.00 0.00 34.88 4.92
3040 3771 2.754552 GCATCTAATTCCCACAGCAACA 59.245 45.455 0.00 0.00 0.00 3.33
3203 3958 1.255882 TGCCAATTCACCATGTCACC 58.744 50.000 0.00 0.00 0.00 4.02
3375 4273 7.559590 ACCATTGAGCAAACAGAGAATATAC 57.440 36.000 0.00 0.00 0.00 1.47
3642 4540 2.350192 CCTTGAACAAACGGGCAAAAAC 59.650 45.455 0.00 0.00 0.00 2.43
3695 4594 7.376072 GTGAACTTAAGTTAATGAGTGCACAAC 59.624 37.037 20.58 13.92 44.49 3.32
3700 4599 7.803659 GGAAAGTGAACTTAAGTTAATGAGTGC 59.196 37.037 20.58 6.65 38.56 4.40
3706 4605 8.762481 AGTTGGGAAAGTGAACTTAAGTTAAT 57.238 30.769 20.58 7.17 38.56 1.40
3721 4620 2.951642 TGAACTGCAAGAGTTGGGAAAG 59.048 45.455 0.00 0.00 45.48 2.62
3756 4656 2.564947 ACAAACAACTTTGCAACTCCCA 59.435 40.909 0.00 0.00 40.57 4.37
3758 4658 2.851824 CGACAAACAACTTTGCAACTCC 59.148 45.455 0.00 0.00 40.57 3.85
3798 4698 3.755378 TCTCTCTGAAATTCTTTGCAGCC 59.245 43.478 0.00 0.00 0.00 4.85
3917 4817 4.202161 CCGGCTAGACAGTCATGTTAATCT 60.202 45.833 2.66 0.00 40.68 2.40
4208 5108 2.239402 TGTCATCCTTGAGCTGCCAATA 59.761 45.455 0.00 0.00 30.85 1.90
4346 5246 1.775385 TCGACCATGAGGCATGACTA 58.225 50.000 0.00 0.00 43.81 2.59
4354 5254 4.194640 ACAAGATCAATTCGACCATGAGG 58.805 43.478 0.00 0.00 42.21 3.86
4400 5314 0.881118 CAATTGGTGTTCGGACTGGG 59.119 55.000 0.00 0.00 0.00 4.45
4411 5325 6.636705 AGATGGACATGAATTTCAATTGGTG 58.363 36.000 5.42 0.00 0.00 4.17
4503 5417 2.143876 ATTTTGGGACGGAGGGATTG 57.856 50.000 0.00 0.00 0.00 2.67
4504 5418 3.268595 ACTTATTTTGGGACGGAGGGATT 59.731 43.478 0.00 0.00 0.00 3.01
4505 5419 2.850568 ACTTATTTTGGGACGGAGGGAT 59.149 45.455 0.00 0.00 0.00 3.85
4506 5420 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
4507 5421 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
4508 5422 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4509 5423 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4510 5424 3.581332 AGAGACACTTATTTTGGGACGGA 59.419 43.478 0.00 0.00 0.00 4.69
4511 5425 3.939066 AGAGACACTTATTTTGGGACGG 58.061 45.455 0.00 0.00 0.00 4.79
4512 5426 5.929992 TGTTAGAGACACTTATTTTGGGACG 59.070 40.000 0.00 0.00 32.00 4.79
4526 5440 8.004087 ACAACTTTGTACTAGTGTTAGAGACA 57.996 34.615 5.39 0.00 40.16 3.41
4541 5455 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
4542 5456 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
4543 5457 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
4544 5458 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
4545 5459 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
4546 5460 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
4547 5461 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
4548 5462 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
4549 5463 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
4550 5464 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
4551 5465 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
4552 5466 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
4553 5467 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
4554 5468 6.539173 TCCCAAAATAAGTGTCTCAAGCTTA 58.461 36.000 0.00 0.00 0.00 3.09
4555 5469 5.385198 TCCCAAAATAAGTGTCTCAAGCTT 58.615 37.500 0.00 0.00 0.00 3.74
4556 5470 4.985538 TCCCAAAATAAGTGTCTCAAGCT 58.014 39.130 0.00 0.00 0.00 3.74
4557 5471 5.393461 CCATCCCAAAATAAGTGTCTCAAGC 60.393 44.000 0.00 0.00 0.00 4.01
4558 5472 5.945784 TCCATCCCAAAATAAGTGTCTCAAG 59.054 40.000 0.00 0.00 0.00 3.02
4559 5473 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
4560 5474 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
4561 5475 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
4562 5476 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
4563 5477 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
4564 5478 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
4565 5479 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
4566 5480 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
4567 5481 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
4568 5482 5.293643 TCTACTCCCTCCATCCCAAAATAA 58.706 41.667 0.00 0.00 0.00 1.40
4569 5483 4.903149 TCTACTCCCTCCATCCCAAAATA 58.097 43.478 0.00 0.00 0.00 1.40
4570 5484 3.747852 TCTACTCCCTCCATCCCAAAAT 58.252 45.455 0.00 0.00 0.00 1.82
4571 5485 3.214694 TCTACTCCCTCCATCCCAAAA 57.785 47.619 0.00 0.00 0.00 2.44
4572 5486 2.961536 TCTACTCCCTCCATCCCAAA 57.038 50.000 0.00 0.00 0.00 3.28
4573 5487 2.961536 TTCTACTCCCTCCATCCCAA 57.038 50.000 0.00 0.00 0.00 4.12
4574 5488 2.961536 TTTCTACTCCCTCCATCCCA 57.038 50.000 0.00 0.00 0.00 4.37
4575 5489 4.908481 ACTAATTTCTACTCCCTCCATCCC 59.092 45.833 0.00 0.00 0.00 3.85
4576 5490 5.743422 GCACTAATTTCTACTCCCTCCATCC 60.743 48.000 0.00 0.00 0.00 3.51
4577 5491 5.071115 AGCACTAATTTCTACTCCCTCCATC 59.929 44.000 0.00 0.00 0.00 3.51
4578 5492 4.971924 AGCACTAATTTCTACTCCCTCCAT 59.028 41.667 0.00 0.00 0.00 3.41
4579 5493 4.362677 AGCACTAATTTCTACTCCCTCCA 58.637 43.478 0.00 0.00 0.00 3.86
4580 5494 5.119694 CAAGCACTAATTTCTACTCCCTCC 58.880 45.833 0.00 0.00 0.00 4.30
4581 5495 5.119694 CCAAGCACTAATTTCTACTCCCTC 58.880 45.833 0.00 0.00 0.00 4.30
4582 5496 4.626529 GCCAAGCACTAATTTCTACTCCCT 60.627 45.833 0.00 0.00 0.00 4.20
4583 5497 3.628032 GCCAAGCACTAATTTCTACTCCC 59.372 47.826 0.00 0.00 0.00 4.30
4584 5498 4.518249 AGCCAAGCACTAATTTCTACTCC 58.482 43.478 0.00 0.00 0.00 3.85
4585 5499 6.502136 AAAGCCAAGCACTAATTTCTACTC 57.498 37.500 0.00 0.00 0.00 2.59
4586 5500 6.901081 AAAAGCCAAGCACTAATTTCTACT 57.099 33.333 0.00 0.00 0.00 2.57
4634 5548 5.707298 GGCAAGTTATGATAGGCACATGTAT 59.293 40.000 0.00 0.00 0.00 2.29
4676 5590 9.401873 CACCATATTCATGTTTAATGCTGTATG 57.598 33.333 0.00 0.00 0.00 2.39
4734 5648 1.573026 TCTTCGTGTTAGCGTTGCAA 58.427 45.000 0.00 0.00 0.00 4.08
4788 5702 7.071069 AGAGAATACAACATATGCATCAGGA 57.929 36.000 0.19 0.00 0.00 3.86
5568 6482 2.711009 TGTCTTGACTGGGTCCTCAATT 59.289 45.455 2.35 0.00 0.00 2.32
5604 6518 1.203052 CATGCTTGCTCGGGAATTTGT 59.797 47.619 0.00 0.00 0.00 2.83
5889 6803 8.011844 TGAAGAAGTAGAAGATAGCATAAGCA 57.988 34.615 0.00 0.00 45.49 3.91
5931 6845 3.505293 AGAGAATGCCTGAAACAAGCTTC 59.495 43.478 0.00 0.00 0.00 3.86
6009 6923 1.329906 CAGAAGCAAGCATAGAAGCCG 59.670 52.381 0.00 0.00 34.23 5.52
6080 6994 6.059787 AGCAGACAGGAAACTTATCTTGAT 57.940 37.500 0.00 0.00 40.21 2.57
6132 7046 4.320714 CCAGCACCATGTATGATATTGCAC 60.321 45.833 0.00 0.00 0.00 4.57
6198 7132 3.010920 TCTTACTCCTACCAGGCTACACA 59.989 47.826 0.00 0.00 34.61 3.72
6199 7133 3.629087 TCTTACTCCTACCAGGCTACAC 58.371 50.000 0.00 0.00 34.61 2.90
6222 7156 1.089481 CATCCGTGAACATCCGGTGG 61.089 60.000 0.00 0.00 44.51 4.61
6266 7200 2.674852 ACACAAGACATGCTAATCTGCG 59.325 45.455 0.00 0.00 35.36 5.18
6283 7217 9.502091 AGCACTCAGTATTTTTAGAATTACACA 57.498 29.630 0.00 0.00 0.00 3.72
6284 7218 9.974750 GAGCACTCAGTATTTTTAGAATTACAC 57.025 33.333 0.00 0.00 0.00 2.90
6297 7231 4.090090 ACAGTACAGGAGCACTCAGTATT 58.910 43.478 0.00 0.00 0.00 1.89
6301 7235 3.321497 GAAACAGTACAGGAGCACTCAG 58.679 50.000 0.00 0.00 0.00 3.35
6329 7263 1.075212 TGGAACAGGCATGGTCAATCA 59.925 47.619 19.38 4.11 45.63 2.57
6355 7289 5.005299 CGAACTGCGTGTAATATGACATGAA 59.995 40.000 15.65 4.82 38.41 2.57
6357 7291 4.751172 CGAACTGCGTGTAATATGACATG 58.249 43.478 7.96 7.96 39.03 3.21
6358 7292 3.245284 GCGAACTGCGTGTAATATGACAT 59.755 43.478 0.00 0.00 43.41 3.06
6360 7294 3.220350 GCGAACTGCGTGTAATATGAC 57.780 47.619 0.00 0.00 43.41 3.06
6377 7311 2.288666 GCACCAAGAAATATCCAGCGA 58.711 47.619 0.00 0.00 0.00 4.93
6393 7335 4.165779 CACCAACGAGAAATTTATGCACC 58.834 43.478 0.00 0.00 0.00 5.01
6402 7344 5.476599 TGAAATCATTCCACCAACGAGAAAT 59.523 36.000 0.00 0.00 34.49 2.17
6445 7387 5.622770 TTGAAATTTTCTTAGTCCTCCGC 57.377 39.130 10.33 0.00 0.00 5.54
6446 7388 7.422399 TGTTTTGAAATTTTCTTAGTCCTCCG 58.578 34.615 10.33 0.00 0.00 4.63
6489 7610 5.344128 GCTTTCTGATAAACGTCGTCTTGTA 59.656 40.000 0.00 0.00 0.00 2.41
6490 7611 4.150098 GCTTTCTGATAAACGTCGTCTTGT 59.850 41.667 0.00 0.00 0.00 3.16
6491 7612 4.149922 TGCTTTCTGATAAACGTCGTCTTG 59.850 41.667 0.00 0.00 0.00 3.02
6535 7656 9.066892 ACTGCATTCTCAGTGAATAAAGTTTTA 57.933 29.630 0.00 0.00 44.88 1.52
6536 7657 7.945134 ACTGCATTCTCAGTGAATAAAGTTTT 58.055 30.769 0.00 0.00 44.88 2.43
6560 7681 4.049186 TCAGAACTCTAGCGTGTTTTCAC 58.951 43.478 0.00 0.00 46.33 3.18
6561 7682 4.049186 GTCAGAACTCTAGCGTGTTTTCA 58.951 43.478 0.00 0.00 0.00 2.69
6563 7684 4.051922 CAGTCAGAACTCTAGCGTGTTTT 58.948 43.478 0.00 0.00 31.71 2.43
6564 7685 3.553096 CCAGTCAGAACTCTAGCGTGTTT 60.553 47.826 0.00 0.00 31.71 2.83
6567 7688 1.813178 TCCAGTCAGAACTCTAGCGTG 59.187 52.381 0.00 0.00 31.71 5.34
6569 7690 3.506810 CTTTCCAGTCAGAACTCTAGCG 58.493 50.000 0.00 0.00 31.71 4.26
6570 7691 3.258228 GCTTTCCAGTCAGAACTCTAGC 58.742 50.000 0.00 0.00 31.71 3.42
6571 7692 3.513515 AGGCTTTCCAGTCAGAACTCTAG 59.486 47.826 0.00 0.00 31.71 2.43
6573 7694 2.334023 AGGCTTTCCAGTCAGAACTCT 58.666 47.619 0.00 0.00 31.71 3.24
6589 7736 1.227234 GCGGTGCAAAACAAAGGCT 60.227 52.632 0.00 0.00 0.00 4.58
6605 7752 1.154413 GGTCACTTGTGAATGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
6611 7758 3.973206 ATATCCGTGGTCACTTGTGAA 57.027 42.857 4.93 0.00 0.00 3.18
6613 7760 4.112634 CAGTATATCCGTGGTCACTTGTG 58.887 47.826 0.00 0.00 0.00 3.33
6618 7765 3.633525 TGTACCAGTATATCCGTGGTCAC 59.366 47.826 6.79 5.72 43.73 3.67
6631 7778 0.459899 CTCGCATGCCTGTACCAGTA 59.540 55.000 13.15 0.00 0.00 2.74
6637 7784 1.381191 TCCTCCTCGCATGCCTGTA 60.381 57.895 13.15 0.00 0.00 2.74
6703 7850 2.105128 CTGACTCCCGCTAAGCCG 59.895 66.667 0.00 0.00 0.00 5.52
6728 7875 2.348888 GGGTGATCAGGACGACGGT 61.349 63.158 0.00 0.00 0.00 4.83
6775 7922 1.217585 CCCACATGATACGCGAGCTG 61.218 60.000 15.93 5.21 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.