Multiple sequence alignment - TraesCS7A01G361600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G361600 chr7A 100.000 5748 0 0 1 5748 536120464 536126211 0.000000e+00 10615.0
1 TraesCS7A01G361600 chr7A 75.135 925 154 49 3786 4660 536508118 536509016 1.180000e-96 364.0
2 TraesCS7A01G361600 chr7A 82.243 321 47 9 5430 5748 182724003 182724315 9.490000e-68 268.0
3 TraesCS7A01G361600 chr7A 80.859 256 32 9 2684 2923 736106618 736106872 9.840000e-43 185.0
4 TraesCS7A01G361600 chr7A 81.224 245 29 9 2698 2926 191839895 191839652 1.270000e-41 182.0
5 TraesCS7A01G361600 chr7A 81.325 166 21 6 2018 2182 191840520 191840364 6.050000e-25 126.0
6 TraesCS7A01G361600 chr7A 87.179 78 7 2 1 78 735984808 735984734 1.030000e-12 86.1
7 TraesCS7A01G361600 chr7D 91.780 2713 139 40 2513 5174 463963741 463961062 0.000000e+00 3698.0
8 TraesCS7A01G361600 chr7D 90.405 2220 142 37 72 2256 463966395 463964212 0.000000e+00 2854.0
9 TraesCS7A01G361600 chr7D 74.726 914 160 47 3792 4656 463893823 463892932 5.520000e-90 342.0
10 TraesCS7A01G361600 chr7D 90.960 177 12 3 2345 2517 463964219 463964043 9.630000e-58 235.0
11 TraesCS7A01G361600 chr7D 80.426 235 35 10 5523 5748 623747921 623747689 9.910000e-38 169.0
12 TraesCS7A01G361600 chr7D 85.000 100 12 3 2253 2350 74416692 74416594 1.320000e-16 99.0
13 TraesCS7A01G361600 chr7B 89.842 2402 175 37 3385 5748 487220589 487222959 0.000000e+00 3020.0
14 TraesCS7A01G361600 chr7B 89.672 2198 165 34 82 2239 487217388 487219563 0.000000e+00 2745.0
15 TraesCS7A01G361600 chr7B 92.491 799 31 10 2373 3146 487219580 487220374 0.000000e+00 1116.0
16 TraesCS7A01G361600 chr7B 74.945 914 162 46 3782 4645 487801581 487802477 1.970000e-94 357.0
17 TraesCS7A01G361600 chr7B 100.000 29 0 0 1149 1177 89891321 89891293 3.000000e-03 54.7
18 TraesCS7A01G361600 chr3B 83.261 460 34 15 3458 3916 805550099 805549682 3.250000e-102 383.0
19 TraesCS7A01G361600 chr3B 85.801 331 22 11 3588 3916 805637496 805637803 1.540000e-85 327.0
20 TraesCS7A01G361600 chr3B 82.979 376 38 10 3834 4201 586144735 586145092 3.340000e-82 316.0
21 TraesCS7A01G361600 chr1D 78.483 567 80 24 5208 5745 404976417 404975864 3.320000e-87 333.0
22 TraesCS7A01G361600 chrUn 85.366 328 20 12 3591 3916 208959950 208959649 1.200000e-81 315.0
23 TraesCS7A01G361600 chrUn 84.894 331 22 12 3588 3916 197806323 197806627 5.590000e-80 309.0
24 TraesCS7A01G361600 chrUn 85.061 328 20 12 3591 3916 367296742 367296442 2.010000e-79 307.0
25 TraesCS7A01G361600 chrUn 84.592 331 22 12 3588 3916 398557548 398557851 9.360000e-78 302.0
26 TraesCS7A01G361600 chrUn 83.704 270 17 11 3648 3916 400689944 400690187 4.480000e-56 230.0
27 TraesCS7A01G361600 chrUn 90.541 74 2 4 1 73 2669761 2669830 6.130000e-15 93.5
28 TraesCS7A01G361600 chr3D 82.979 376 37 14 3834 4201 446759287 446759643 1.200000e-81 315.0
29 TraesCS7A01G361600 chr3D 78.988 257 42 11 5502 5748 348920082 348920336 1.280000e-36 165.0
30 TraesCS7A01G361600 chr1B 79.144 374 52 20 2580 2927 46136956 46137329 9.630000e-58 235.0
31 TraesCS7A01G361600 chr2D 75.983 483 70 28 5267 5716 149673268 149672799 2.100000e-49 207.0
32 TraesCS7A01G361600 chr2D 86.316 95 11 2 2261 2354 404088003 404087910 1.020000e-17 102.0
33 TraesCS7A01G361600 chr2D 84.314 102 12 4 2258 2357 417350225 417350126 4.740000e-16 97.1
34 TraesCS7A01G361600 chr6A 80.139 287 44 11 5463 5739 93284294 93284577 9.770000e-48 202.0
35 TraesCS7A01G361600 chr6A 80.695 259 33 9 2684 2926 565049207 565048950 9.840000e-43 185.0
36 TraesCS7A01G361600 chr6A 82.857 140 17 3 2018 2157 565049818 565049686 1.010000e-22 119.0
37 TraesCS7A01G361600 chr6A 86.170 94 11 2 2258 2350 517665452 517665544 3.660000e-17 100.0
38 TraesCS7A01G361600 chr6A 89.041 73 4 2 1 73 607061022 607061090 2.850000e-13 87.9
39 TraesCS7A01G361600 chr6A 100.000 28 0 0 81 108 38683199 38683172 1.000000e-02 52.8
40 TraesCS7A01G361600 chr4D 79.677 310 37 20 5422 5709 16454853 16455158 3.510000e-47 200.0
41 TraesCS7A01G361600 chr6B 78.827 307 52 10 5443 5739 150223947 150224250 1.630000e-45 195.0
42 TraesCS7A01G361600 chr6B 80.695 259 33 9 2684 2926 558913979 558913722 9.840000e-43 185.0
43 TraesCS7A01G361600 chr6B 80.078 256 34 10 2684 2923 94331607 94331861 2.130000e-39 174.0
44 TraesCS7A01G361600 chr6B 81.928 166 20 6 2018 2182 558914592 558914436 1.300000e-26 132.0
45 TraesCS7A01G361600 chr6B 81.212 165 23 4 2018 2182 149037611 149037767 6.050000e-25 126.0
46 TraesCS7A01G361600 chr6B 90.411 73 4 1 1 73 663677001 663676932 6.130000e-15 93.5
47 TraesCS7A01G361600 chr5B 80.899 267 34 9 2669 2919 485809065 485809330 1.630000e-45 195.0
48 TraesCS7A01G361600 chr5B 87.234 94 10 2 2258 2350 638485380 638485472 7.880000e-19 106.0
49 TraesCS7A01G361600 chr5B 86.170 94 11 2 2258 2350 254944394 254944486 3.660000e-17 100.0
50 TraesCS7A01G361600 chr3A 79.930 284 40 12 2354 2635 472412911 472412643 5.880000e-45 193.0
51 TraesCS7A01G361600 chr3A 87.218 133 16 1 4070 4201 588626846 588626978 3.590000e-32 150.0
52 TraesCS7A01G361600 chr3A 81.928 166 20 6 2018 2182 472415196 472415040 1.300000e-26 132.0
53 TraesCS7A01G361600 chr3A 86.207 87 7 4 1 86 15671818 15671900 7.930000e-14 89.8
54 TraesCS7A01G361600 chr2A 78.073 301 56 7 5455 5748 728240616 728240319 1.270000e-41 182.0
55 TraesCS7A01G361600 chr2A 93.151 73 2 2 1 73 724033300 724033231 2.830000e-18 104.0
56 TraesCS7A01G361600 chr5A 81.928 166 20 6 2018 2182 4722280 4722436 1.300000e-26 132.0
57 TraesCS7A01G361600 chr5A 97.143 35 1 0 75 109 440675315 440675281 6.220000e-05 60.2
58 TraesCS7A01G361600 chr4B 81.928 166 20 6 2018 2182 597294749 597294905 1.300000e-26 132.0
59 TraesCS7A01G361600 chr4B 89.041 73 5 2 1 73 600659732 600659801 2.850000e-13 87.9
60 TraesCS7A01G361600 chr1A 80.851 141 24 3 5220 5360 550430533 550430396 2.190000e-19 108.0
61 TraesCS7A01G361600 chr1A 89.024 82 7 2 2258 2338 6567092 6567172 3.660000e-17 100.0
62 TraesCS7A01G361600 chr5D 85.714 98 12 2 2258 2354 504110651 504110555 1.020000e-17 102.0
63 TraesCS7A01G361600 chr5D 85.149 101 12 3 2240 2338 180472045 180472144 3.660000e-17 100.0
64 TraesCS7A01G361600 chr4A 91.045 67 3 1 1 67 522139596 522139659 2.850000e-13 87.9
65 TraesCS7A01G361600 chr4A 87.179 78 7 2 1 78 621583711 621583785 1.030000e-12 86.1
66 TraesCS7A01G361600 chr4A 94.286 35 2 0 75 109 200137529 200137563 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G361600 chr7A 536120464 536126211 5747 False 10615.000000 10615 100.000000 1 5748 1 chr7A.!!$F2 5747
1 TraesCS7A01G361600 chr7A 536508118 536509016 898 False 364.000000 364 75.135000 3786 4660 1 chr7A.!!$F3 874
2 TraesCS7A01G361600 chr7D 463961062 463966395 5333 True 2262.333333 3698 91.048333 72 5174 3 chr7D.!!$R4 5102
3 TraesCS7A01G361600 chr7D 463892932 463893823 891 True 342.000000 342 74.726000 3792 4656 1 chr7D.!!$R2 864
4 TraesCS7A01G361600 chr7B 487217388 487222959 5571 False 2293.666667 3020 90.668333 82 5748 3 chr7B.!!$F2 5666
5 TraesCS7A01G361600 chr7B 487801581 487802477 896 False 357.000000 357 74.945000 3782 4645 1 chr7B.!!$F1 863
6 TraesCS7A01G361600 chr1D 404975864 404976417 553 True 333.000000 333 78.483000 5208 5745 1 chr1D.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 940 0.035881 CCAGGCTTCAGCAGTCTCAA 59.964 55.0 0.3 0.00 44.36 3.02 F
918 950 0.108233 CAGCAGTCTCAAGAGCCTCC 60.108 60.0 0.0 0.00 0.00 4.30 F
2274 2331 0.549169 TCCTCCCTCCGTCCCAAAAT 60.549 55.0 0.0 0.00 0.00 1.82 F
3272 3696 0.604578 ATTGGGCAATGACACAGCAC 59.395 50.0 0.0 0.24 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 2401 0.554792 AGCCATGCTTTATGCTCCCT 59.445 50.0 0.00 0.00 43.37 4.20 R
2460 2520 1.034292 GGGTCTTTGAGGCCATGCTC 61.034 60.0 5.01 0.00 43.30 4.26 R
3446 3880 0.461870 ACGACTGCAGCACAACAAGA 60.462 50.0 15.27 0.00 0.00 3.02 R
5031 5522 0.103390 TCTCGTGAACCTGCAAACGA 59.897 50.0 0.00 7.65 42.30 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 185 1.463444 GATGGTTGGTACTGTGCGAAC 59.537 52.381 13.67 13.67 0.00 3.95
187 193 2.415625 GGTACTGTGCGAACGAGAGAAT 60.416 50.000 0.00 0.00 0.00 2.40
190 196 2.228103 ACTGTGCGAACGAGAGAATGTA 59.772 45.455 0.00 0.00 0.00 2.29
258 264 2.293677 AGGCAGATAATCGTCGGTGTAG 59.706 50.000 0.00 0.00 0.00 2.74
262 268 4.732647 GCAGATAATCGTCGGTGTAGACAA 60.733 45.833 0.00 0.00 40.98 3.18
264 270 6.665465 CAGATAATCGTCGGTGTAGACAATA 58.335 40.000 0.00 0.00 40.98 1.90
320 329 6.239908 AGTTCCTTTTTGCAAAACACAAAG 57.760 33.333 23.79 17.02 42.98 2.77
335 344 3.450578 CACAAAGCCATGTGCATAATCC 58.549 45.455 6.55 0.00 43.67 3.01
337 346 1.708341 AAGCCATGTGCATAATCCCC 58.292 50.000 8.58 0.00 44.83 4.81
349 358 2.930826 TAATCCCCGCATCTTTCCTC 57.069 50.000 0.00 0.00 0.00 3.71
387 396 4.623932 AAAGGGGAGAAAATCCTTTTGC 57.376 40.909 0.00 0.00 45.46 3.68
388 397 3.327757 AAAGGGGAGAAAATCCTTTTGCC 59.672 43.478 0.00 0.00 45.46 4.52
394 403 6.060028 GGAGAAAATCCTTTTGCCAAAAAC 57.940 37.500 3.91 0.00 45.64 2.43
415 424 1.269166 CACGCTAGCTACCAAGAACG 58.731 55.000 13.93 0.00 0.00 3.95
439 448 4.177165 TGCATTTAGGCATGTGAAGTTG 57.823 40.909 0.00 0.00 39.25 3.16
440 449 3.573538 TGCATTTAGGCATGTGAAGTTGT 59.426 39.130 0.00 0.00 39.25 3.32
441 450 3.922240 GCATTTAGGCATGTGAAGTTGTG 59.078 43.478 0.00 0.00 0.00 3.33
442 451 4.321156 GCATTTAGGCATGTGAAGTTGTGA 60.321 41.667 0.00 0.00 0.00 3.58
443 452 5.396484 CATTTAGGCATGTGAAGTTGTGAG 58.604 41.667 0.00 0.00 0.00 3.51
446 455 1.609208 GCATGTGAAGTTGTGAGGGT 58.391 50.000 0.00 0.00 0.00 4.34
447 456 2.552155 GGCATGTGAAGTTGTGAGGGTA 60.552 50.000 0.00 0.00 0.00 3.69
448 457 3.347216 GCATGTGAAGTTGTGAGGGTAT 58.653 45.455 0.00 0.00 0.00 2.73
450 459 4.578871 CATGTGAAGTTGTGAGGGTATGA 58.421 43.478 0.00 0.00 0.00 2.15
452 461 3.007940 TGTGAAGTTGTGAGGGTATGAGG 59.992 47.826 0.00 0.00 0.00 3.86
453 462 3.008049 GTGAAGTTGTGAGGGTATGAGGT 59.992 47.826 0.00 0.00 0.00 3.85
456 465 4.062490 AGTTGTGAGGGTATGAGGTAGT 57.938 45.455 0.00 0.00 0.00 2.73
457 466 4.024670 AGTTGTGAGGGTATGAGGTAGTC 58.975 47.826 0.00 0.00 0.00 2.59
537 546 3.561725 CAGAAATAGGCGACCAGATTTCC 59.438 47.826 20.10 10.97 38.12 3.13
538 547 2.640316 AATAGGCGACCAGATTTCCC 57.360 50.000 0.00 0.00 0.00 3.97
539 548 1.507140 ATAGGCGACCAGATTTCCCA 58.493 50.000 0.00 0.00 0.00 4.37
561 570 5.981315 CCATAATATGAACTGGCAAAAGCAG 59.019 40.000 1.10 0.00 0.00 4.24
610 619 2.024176 TATTCGCTGGCCAGAAAGAC 57.976 50.000 37.21 16.95 0.00 3.01
634 643 4.746611 GCAGTGGAAAATCAAGAAAGTTGG 59.253 41.667 0.00 0.00 0.00 3.77
643 652 3.575805 TCAAGAAAGTTGGGCCATTTCT 58.424 40.909 23.29 23.29 43.33 2.52
748 774 2.354259 CCACTGAGCTGATCCACTTTC 58.646 52.381 0.00 0.00 0.00 2.62
753 779 4.284490 ACTGAGCTGATCCACTTTCAGTTA 59.716 41.667 0.00 0.00 41.63 2.24
754 780 5.221722 ACTGAGCTGATCCACTTTCAGTTAA 60.222 40.000 0.00 0.00 41.63 2.01
832 862 8.143193 AGTTTATGAAACAGCATCATTTGTTGA 58.857 29.630 4.99 0.00 43.79 3.18
849 879 1.379176 GAGGCTTTTGAGAGGGCCC 60.379 63.158 16.46 16.46 45.07 5.80
891 921 2.358737 CACCCTCACCGGCTTCAC 60.359 66.667 0.00 0.00 0.00 3.18
902 932 2.338785 GGCTTCACCAGGCTTCAGC 61.339 63.158 0.00 0.00 45.03 4.26
903 933 1.601759 GCTTCACCAGGCTTCAGCA 60.602 57.895 0.30 0.00 44.36 4.41
904 934 1.584380 GCTTCACCAGGCTTCAGCAG 61.584 60.000 0.30 0.00 44.36 4.24
905 935 0.250640 CTTCACCAGGCTTCAGCAGT 60.251 55.000 0.30 0.00 44.36 4.40
906 936 0.250467 TTCACCAGGCTTCAGCAGTC 60.250 55.000 0.30 0.00 44.36 3.51
907 937 1.123861 TCACCAGGCTTCAGCAGTCT 61.124 55.000 0.30 0.00 44.36 3.24
909 939 1.123861 ACCAGGCTTCAGCAGTCTCA 61.124 55.000 0.30 0.00 44.36 3.27
910 940 0.035881 CCAGGCTTCAGCAGTCTCAA 59.964 55.000 0.30 0.00 44.36 3.02
914 946 1.077915 GCTTCAGCAGTCTCAAGAGC 58.922 55.000 0.00 0.00 41.59 4.09
918 950 0.108233 CAGCAGTCTCAAGAGCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
936 968 2.045045 TCCCATCCGCTTTGCCTG 60.045 61.111 0.00 0.00 0.00 4.85
938 970 2.045045 CCATCCGCTTTGCCTGGA 60.045 61.111 0.00 0.00 35.96 3.86
939 971 2.117156 CCATCCGCTTTGCCTGGAG 61.117 63.158 0.00 0.00 34.75 3.86
940 972 2.117156 CATCCGCTTTGCCTGGAGG 61.117 63.158 0.00 0.00 34.75 4.30
941 973 2.300967 ATCCGCTTTGCCTGGAGGA 61.301 57.895 0.00 0.00 37.39 3.71
952 984 3.157087 TGCCTGGAGGAAAGAAATTGTC 58.843 45.455 0.00 0.00 37.39 3.18
996 1033 0.960861 CTTTCTTCCTCCCCGTTGCC 60.961 60.000 0.00 0.00 0.00 4.52
1033 1070 4.864334 CATGGTGCGCCCTCCTCC 62.864 72.222 15.15 0.00 0.00 4.30
1283 1320 0.999406 CAGGCGAGTGATTAACCACG 59.001 55.000 0.00 0.00 41.67 4.94
1305 1342 3.044305 GAGCACACCGTCACTGCC 61.044 66.667 0.00 0.00 0.00 4.85
1328 1365 1.377725 CTCTTCCCCGTTGCATGCT 60.378 57.895 20.33 0.00 0.00 3.79
1334 1371 2.406401 CCGTTGCATGCTGCTAGC 59.594 61.111 20.33 8.10 45.31 3.42
1356 1393 5.521372 AGCAGATTTTTGTTCTTTTGCTGAC 59.479 36.000 0.00 0.00 39.02 3.51
1366 1403 6.272318 TGTTCTTTTGCTGACCTTTATGTTG 58.728 36.000 0.00 0.00 0.00 3.33
1371 1408 3.411446 TGCTGACCTTTATGTTGTCCTG 58.589 45.455 0.00 0.00 0.00 3.86
1382 1419 7.094248 CCTTTATGTTGTCCTGACATTTCATGA 60.094 37.037 16.16 0.00 41.52 3.07
1385 1422 4.886489 TGTTGTCCTGACATTTCATGAACA 59.114 37.500 7.89 1.84 41.52 3.18
1455 1492 3.443045 CAGTGCGCCATCAACCCC 61.443 66.667 4.18 0.00 0.00 4.95
1476 1513 3.617263 CCGAAGAAACCTTCACTTATCGG 59.383 47.826 0.00 0.00 39.93 4.18
1505 1542 1.067776 CGACAAGGTACCTCCACTGTC 60.068 57.143 25.28 25.28 42.68 3.51
1513 1550 2.568623 ACCTCCACTGTCCAAATCAC 57.431 50.000 0.00 0.00 0.00 3.06
1515 1552 1.352352 CCTCCACTGTCCAAATCACCT 59.648 52.381 0.00 0.00 0.00 4.00
1517 1554 3.600388 CTCCACTGTCCAAATCACCTAC 58.400 50.000 0.00 0.00 0.00 3.18
1518 1555 2.976185 TCCACTGTCCAAATCACCTACA 59.024 45.455 0.00 0.00 0.00 2.74
1519 1556 3.587061 TCCACTGTCCAAATCACCTACAT 59.413 43.478 0.00 0.00 0.00 2.29
1520 1557 3.691118 CCACTGTCCAAATCACCTACATG 59.309 47.826 0.00 0.00 0.00 3.21
1521 1558 4.565444 CCACTGTCCAAATCACCTACATGA 60.565 45.833 0.00 0.00 0.00 3.07
1523 1560 3.595173 TGTCCAAATCACCTACATGACG 58.405 45.455 0.00 0.00 0.00 4.35
1524 1561 2.351726 GTCCAAATCACCTACATGACGC 59.648 50.000 0.00 0.00 0.00 5.19
1525 1562 2.027653 TCCAAATCACCTACATGACGCA 60.028 45.455 0.00 0.00 0.00 5.24
1526 1563 2.095853 CCAAATCACCTACATGACGCAC 59.904 50.000 0.00 0.00 0.00 5.34
1527 1564 2.741517 CAAATCACCTACATGACGCACA 59.258 45.455 0.00 0.00 0.00 4.57
1528 1565 2.010145 ATCACCTACATGACGCACAC 57.990 50.000 0.00 0.00 0.00 3.82
1537 1581 1.086696 ATGACGCACACCATAGTTGC 58.913 50.000 0.00 0.00 0.00 4.17
1571 1615 9.691362 AAACTGAAATTAATCGCAACATTAGTT 57.309 25.926 0.00 0.00 38.88 2.24
1575 1619 9.340695 TGAAATTAATCGCAACATTAGTTTCAG 57.659 29.630 17.65 0.00 43.22 3.02
1576 1620 9.341899 GAAATTAATCGCAACATTAGTTTCAGT 57.658 29.630 15.74 0.00 40.85 3.41
1580 1624 5.600908 TCGCAACATTAGTTTCAGTAACC 57.399 39.130 0.00 0.00 37.46 2.85
1593 1637 4.705337 TCAGTAACCGTTGCAAAACTTT 57.295 36.364 0.00 0.00 0.00 2.66
1597 1641 2.863401 ACCGTTGCAAAACTTTCTCC 57.137 45.000 0.00 0.00 0.00 3.71
1628 1681 8.244113 CCTTCTTTTTAGTTTGACTTGTGACTT 58.756 33.333 0.00 0.00 0.00 3.01
1629 1682 8.964420 TTCTTTTTAGTTTGACTTGTGACTTG 57.036 30.769 0.00 0.00 0.00 3.16
1630 1683 8.106247 TCTTTTTAGTTTGACTTGTGACTTGT 57.894 30.769 0.00 0.00 0.00 3.16
1631 1684 8.020819 TCTTTTTAGTTTGACTTGTGACTTGTG 58.979 33.333 0.00 0.00 0.00 3.33
1632 1685 7.441890 TTTTAGTTTGACTTGTGACTTGTGA 57.558 32.000 0.00 0.00 0.00 3.58
1633 1686 7.624360 TTTAGTTTGACTTGTGACTTGTGAT 57.376 32.000 0.00 0.00 0.00 3.06
1634 1687 7.624360 TTAGTTTGACTTGTGACTTGTGATT 57.376 32.000 0.00 0.00 0.00 2.57
1644 1697 2.374839 TGACTTGTGATTGACCCATGGA 59.625 45.455 15.22 0.00 0.00 3.41
1744 1797 1.883084 GATCGTGGATGTGGCGGAC 60.883 63.158 0.00 0.00 0.00 4.79
1810 1863 1.443872 CAGCGACTGGTACCACGAC 60.444 63.158 24.57 16.43 0.00 4.34
1898 1951 6.859508 GGTAACTGTTAAAACCACACTAATGC 59.140 38.462 1.10 0.00 32.04 3.56
1910 1963 7.303182 ACCACACTAATGCTCTTGCTATATA 57.697 36.000 0.00 0.00 40.48 0.86
1911 1964 7.155328 ACCACACTAATGCTCTTGCTATATAC 58.845 38.462 0.00 0.00 40.48 1.47
1912 1965 7.015682 ACCACACTAATGCTCTTGCTATATACT 59.984 37.037 0.00 0.00 40.48 2.12
1913 1966 7.330454 CCACACTAATGCTCTTGCTATATACTG 59.670 40.741 0.00 0.00 40.48 2.74
1914 1967 7.869937 CACACTAATGCTCTTGCTATATACTGT 59.130 37.037 0.00 0.00 40.48 3.55
1915 1968 9.078990 ACACTAATGCTCTTGCTATATACTGTA 57.921 33.333 0.00 0.00 40.48 2.74
1920 1973 9.784531 AATGCTCTTGCTATATACTGTATGTTT 57.215 29.630 10.51 0.00 40.48 2.83
1921 1974 9.784531 ATGCTCTTGCTATATACTGTATGTTTT 57.215 29.630 10.51 0.00 40.48 2.43
1922 1975 9.045223 TGCTCTTGCTATATACTGTATGTTTTG 57.955 33.333 10.51 0.41 40.48 2.44
1923 1976 8.012241 GCTCTTGCTATATACTGTATGTTTTGC 58.988 37.037 10.51 9.36 36.03 3.68
1928 1981 9.996554 TGCTATATACTGTATGTTTTGCTATGT 57.003 29.630 10.51 0.00 0.00 2.29
1932 1985 5.551760 ACTGTATGTTTTGCTATGTCTGC 57.448 39.130 0.00 0.00 0.00 4.26
1958 2011 2.225491 GCAAGATGCAGTTTTCACCGTA 59.775 45.455 0.00 0.00 44.26 4.02
1965 2018 3.311322 TGCAGTTTTCACCGTAGACAAAG 59.689 43.478 0.00 0.00 0.00 2.77
1971 2024 4.895668 TTCACCGTAGACAAAGGGTATT 57.104 40.909 0.00 0.00 35.90 1.89
1977 2030 5.012975 ACCGTAGACAAAGGGTATTTTGGTA 59.987 40.000 3.85 0.00 41.29 3.25
1992 2045 5.715434 TTTTGGTAGGTTGGATTTACAGC 57.285 39.130 0.00 0.00 0.00 4.40
2024 2078 6.016777 AGTCCAAAATGCACTCTTTCAAGTAG 60.017 38.462 0.00 0.00 0.00 2.57
2084 2139 1.303309 GAGCCCGTCCATCTGATTTG 58.697 55.000 0.00 0.00 0.00 2.32
2100 2155 5.889853 TCTGATTTGGATGATCTTGGAAAGG 59.110 40.000 0.00 0.00 46.24 3.11
2108 2164 2.833338 TGATCTTGGAAAGGGCAATTGG 59.167 45.455 7.72 0.00 46.24 3.16
2122 2178 3.321968 GGCAATTGGTTTGTCCTCTTCTT 59.678 43.478 7.72 0.00 37.65 2.52
2161 2217 5.233988 AGTGCACTAGAAAAGTTCAGCTAG 58.766 41.667 20.16 0.00 35.76 3.42
2177 2233 1.718757 CTAGCTGGTGAATTGGGCGC 61.719 60.000 0.00 0.00 0.00 6.53
2191 2247 1.209261 TGGGCGCTTTAGATGATCACA 59.791 47.619 7.64 0.00 0.00 3.58
2192 2248 2.158769 TGGGCGCTTTAGATGATCACAT 60.159 45.455 7.64 0.00 39.67 3.21
2256 2313 5.967088 CATACCTATGTATGCAGGGTAGTC 58.033 45.833 18.06 0.00 45.66 2.59
2257 2314 3.240302 ACCTATGTATGCAGGGTAGTCC 58.760 50.000 8.94 0.00 36.15 3.85
2258 2315 5.222568 ATACCTATGTATGCAGGGTAGTCCT 60.223 44.000 18.06 4.96 40.40 3.85
2259 2316 3.511934 CCTATGTATGCAGGGTAGTCCTC 59.488 52.174 0.00 0.00 46.12 3.71
2260 2317 1.789523 TGTATGCAGGGTAGTCCTCC 58.210 55.000 0.00 0.00 46.12 4.30
2261 2318 1.049402 GTATGCAGGGTAGTCCTCCC 58.951 60.000 0.00 0.00 46.12 4.30
2266 2323 2.688538 GGGTAGTCCTCCCTCCGT 59.311 66.667 0.00 0.00 41.58 4.69
2267 2324 1.455402 GGGTAGTCCTCCCTCCGTC 60.455 68.421 0.00 0.00 41.58 4.79
2268 2325 1.455402 GGTAGTCCTCCCTCCGTCC 60.455 68.421 0.00 0.00 0.00 4.79
2269 2326 1.455402 GTAGTCCTCCCTCCGTCCC 60.455 68.421 0.00 0.00 0.00 4.46
2270 2327 1.932231 TAGTCCTCCCTCCGTCCCA 60.932 63.158 0.00 0.00 0.00 4.37
2271 2328 1.512201 TAGTCCTCCCTCCGTCCCAA 61.512 60.000 0.00 0.00 0.00 4.12
2272 2329 1.916777 GTCCTCCCTCCGTCCCAAA 60.917 63.158 0.00 0.00 0.00 3.28
2273 2330 1.151987 TCCTCCCTCCGTCCCAAAA 60.152 57.895 0.00 0.00 0.00 2.44
2274 2331 0.549169 TCCTCCCTCCGTCCCAAAAT 60.549 55.000 0.00 0.00 0.00 1.82
2275 2332 1.209621 CCTCCCTCCGTCCCAAAATA 58.790 55.000 0.00 0.00 0.00 1.40
2276 2333 1.562475 CCTCCCTCCGTCCCAAAATAA 59.438 52.381 0.00 0.00 0.00 1.40
2277 2334 2.421529 CCTCCCTCCGTCCCAAAATAAG 60.422 54.545 0.00 0.00 0.00 1.73
2278 2335 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2279 2336 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2280 2337 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2281 2338 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2282 2339 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2283 2340 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2284 2341 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2285 2342 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2286 2343 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2287 2344 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2288 2345 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2289 2346 6.565999 CGTCCCAAAATAAGTGACTCAACTTC 60.566 42.308 0.00 0.00 40.77 3.01
2290 2347 5.468746 TCCCAAAATAAGTGACTCAACTTCG 59.531 40.000 0.00 0.00 40.77 3.79
2291 2348 5.334879 CCCAAAATAAGTGACTCAACTTCGG 60.335 44.000 0.00 0.00 40.77 4.30
2292 2349 5.468746 CCAAAATAAGTGACTCAACTTCGGA 59.531 40.000 0.00 0.00 40.77 4.55
2293 2350 6.363473 CAAAATAAGTGACTCAACTTCGGAC 58.637 40.000 0.00 0.00 40.77 4.79
2294 2351 5.470047 AATAAGTGACTCAACTTCGGACT 57.530 39.130 0.00 0.00 40.77 3.85
2295 2352 6.585695 AATAAGTGACTCAACTTCGGACTA 57.414 37.500 0.00 0.00 40.77 2.59
2296 2353 4.931661 AAGTGACTCAACTTCGGACTAA 57.068 40.909 0.00 0.00 35.44 2.24
2297 2354 5.470047 AAGTGACTCAACTTCGGACTAAT 57.530 39.130 0.00 0.00 35.44 1.73
2298 2355 5.470047 AGTGACTCAACTTCGGACTAATT 57.530 39.130 0.00 0.00 0.00 1.40
2299 2356 5.855045 AGTGACTCAACTTCGGACTAATTT 58.145 37.500 0.00 0.00 0.00 1.82
2300 2357 6.289064 AGTGACTCAACTTCGGACTAATTTT 58.711 36.000 0.00 0.00 0.00 1.82
2301 2358 7.439381 AGTGACTCAACTTCGGACTAATTTTA 58.561 34.615 0.00 0.00 0.00 1.52
2302 2359 7.929785 AGTGACTCAACTTCGGACTAATTTTAA 59.070 33.333 0.00 0.00 0.00 1.52
2303 2360 8.718734 GTGACTCAACTTCGGACTAATTTTAAT 58.281 33.333 0.00 0.00 0.00 1.40
2304 2361 9.932207 TGACTCAACTTCGGACTAATTTTAATA 57.068 29.630 0.00 0.00 0.00 0.98
2306 2363 9.715121 ACTCAACTTCGGACTAATTTTAATACA 57.285 29.630 0.00 0.00 0.00 2.29
2346 2403 8.925161 TTGAGACACTTATTTTGAAACAAAGG 57.075 30.769 0.00 0.00 0.00 3.11
2347 2404 7.488322 TGAGACACTTATTTTGAAACAAAGGG 58.512 34.615 0.00 0.53 0.00 3.95
2348 2405 7.340743 TGAGACACTTATTTTGAAACAAAGGGA 59.659 33.333 7.47 0.00 0.00 4.20
2349 2406 7.716612 AGACACTTATTTTGAAACAAAGGGAG 58.283 34.615 7.47 0.00 0.00 4.30
2350 2407 6.280643 ACACTTATTTTGAAACAAAGGGAGC 58.719 36.000 7.47 0.00 0.00 4.70
2351 2408 6.127196 ACACTTATTTTGAAACAAAGGGAGCA 60.127 34.615 7.47 0.00 0.00 4.26
2352 2409 6.930722 CACTTATTTTGAAACAAAGGGAGCAT 59.069 34.615 0.00 0.00 0.00 3.79
2371 2428 5.499139 GCATAAAGCATGGCTACTGTTTA 57.501 39.130 0.00 0.00 44.79 2.01
2410 2470 2.995939 TGCTCTTGTGAGTTGAATAGCG 59.004 45.455 0.00 0.00 42.13 4.26
2460 2520 4.116238 GGCTAGTCACTAAAGCTAAGCAG 58.884 47.826 0.00 0.00 36.48 4.24
2477 2537 1.093159 CAGAGCATGGCCTCAAAGAC 58.907 55.000 3.32 0.00 34.26 3.01
2599 2965 2.024176 AAAGAAATGGAACCCACCCC 57.976 50.000 0.00 0.00 35.80 4.95
2638 3004 5.240713 AGAAGCACTCACACTTCAAAAAG 57.759 39.130 5.63 0.00 43.84 2.27
2639 3005 4.702131 AGAAGCACTCACACTTCAAAAAGT 59.298 37.500 5.63 0.00 46.80 2.66
2644 3011 7.029563 AGCACTCACACTTCAAAAAGTAAAAG 58.970 34.615 0.00 0.00 43.99 2.27
2667 3034 3.451178 AGACACACACCATGTATAGGACC 59.549 47.826 0.00 0.00 40.64 4.46
2691 3058 4.737855 TTGTAGGCTCAAGACCAGTATC 57.262 45.455 0.00 0.00 0.00 2.24
2696 3063 5.736951 AGGCTCAAGACCAGTATCATATC 57.263 43.478 0.00 0.00 0.00 1.63
2715 3082 7.962441 TCATATCTGTGCTAATGCCTAAAGTA 58.038 34.615 0.00 0.00 38.71 2.24
2721 3088 6.283694 TGTGCTAATGCCTAAAGTATCAGAG 58.716 40.000 0.00 0.00 38.71 3.35
2741 3108 3.474600 AGCAGATCATGTTCCTATGCAC 58.525 45.455 15.08 0.00 34.71 4.57
2742 3109 3.118149 AGCAGATCATGTTCCTATGCACA 60.118 43.478 15.08 0.00 34.71 4.57
2788 3179 1.571457 TGAAGAAAAGGTTGGGGGTGA 59.429 47.619 0.00 0.00 0.00 4.02
2890 3281 2.726821 TGATCTTGGAAACATCTGCCC 58.273 47.619 0.00 0.00 42.32 5.36
2895 3286 2.409870 GGAAACATCTGCCCGCCTG 61.410 63.158 0.00 0.00 0.00 4.85
2896 3287 3.056313 GAAACATCTGCCCGCCTGC 62.056 63.158 0.00 0.00 0.00 4.85
2983 3385 0.905337 AGTGACCCTAGGTGGCACTC 60.905 60.000 25.18 7.79 37.89 3.51
2984 3386 1.612442 TGACCCTAGGTGGCACTCC 60.612 63.158 18.45 1.04 43.30 3.85
2985 3387 2.285442 ACCCTAGGTGGCACTCCC 60.285 66.667 18.45 0.18 44.18 4.30
3181 3584 1.003928 TCACAAGCACCATGAGCATCT 59.996 47.619 11.79 0.00 34.92 2.90
3182 3585 1.132453 CACAAGCACCATGAGCATCTG 59.868 52.381 11.79 8.40 34.92 2.90
3204 3615 5.291178 TGCTGGAGTGTTTGAAAATTGATG 58.709 37.500 0.00 0.00 0.00 3.07
3245 3661 3.302480 CGAAAGACAAGTGGAAGTGTTCG 60.302 47.826 0.00 0.00 0.00 3.95
3249 3665 3.128349 GACAAGTGGAAGTGTTCGCTAA 58.872 45.455 0.00 0.00 0.00 3.09
3250 3666 3.131396 ACAAGTGGAAGTGTTCGCTAAG 58.869 45.455 0.00 0.00 0.00 2.18
3272 3696 0.604578 ATTGGGCAATGACACAGCAC 59.395 50.000 0.00 0.24 0.00 4.40
3307 3738 6.235231 TCTCTGGTCACCTTGGTAATAATC 57.765 41.667 0.00 0.00 0.00 1.75
3337 3768 2.558359 ACTTTGCCTTGGTAGATGTTGC 59.442 45.455 0.00 0.00 0.00 4.17
3345 3777 4.747108 CCTTGGTAGATGTTGCTATCTTCG 59.253 45.833 4.47 0.00 38.35 3.79
3348 3780 4.159693 TGGTAGATGTTGCTATCTTCGTGT 59.840 41.667 4.47 0.00 38.35 4.49
3356 3788 7.949903 TGTTGCTATCTTCGTGTAGTTTTTA 57.050 32.000 0.00 0.00 0.00 1.52
3358 3790 8.277713 TGTTGCTATCTTCGTGTAGTTTTTAAC 58.722 33.333 0.00 0.00 0.00 2.01
3360 3792 8.597662 TGCTATCTTCGTGTAGTTTTTAACTT 57.402 30.769 0.00 0.00 42.81 2.66
3361 3793 9.048446 TGCTATCTTCGTGTAGTTTTTAACTTT 57.952 29.630 0.00 0.00 42.81 2.66
3362 3794 9.874215 GCTATCTTCGTGTAGTTTTTAACTTTT 57.126 29.630 0.00 0.00 42.81 2.27
3393 3826 3.067106 AGACGCTGTTTGATGTCGAAAT 58.933 40.909 0.00 0.00 36.49 2.17
3413 3846 0.907486 TGTCTGGAGATTCTGCCTGG 59.093 55.000 2.47 0.00 0.00 4.45
3418 3852 3.118112 TCTGGAGATTCTGCCTGGATTTC 60.118 47.826 0.00 0.00 0.00 2.17
3421 3855 4.264083 TGGAGATTCTGCCTGGATTTCTTT 60.264 41.667 0.00 0.00 0.00 2.52
3578 4012 3.083997 GCACCGGTGATCCTCCCT 61.084 66.667 38.30 0.00 0.00 4.20
3582 4016 2.435693 CCGGTGATCCTCCCTGTCC 61.436 68.421 0.00 0.00 0.00 4.02
3606 4040 1.347707 CCAACAAGACCTACAGGCTCA 59.652 52.381 0.00 0.00 39.32 4.26
3671 4105 1.287425 GGGTAAGCAAATCCGAGACG 58.713 55.000 0.00 0.00 0.00 4.18
3672 4106 1.134907 GGGTAAGCAAATCCGAGACGA 60.135 52.381 0.00 0.00 0.00 4.20
3673 4107 2.194271 GGTAAGCAAATCCGAGACGAG 58.806 52.381 0.00 0.00 0.00 4.18
3674 4108 1.588861 GTAAGCAAATCCGAGACGAGC 59.411 52.381 0.00 0.00 0.00 5.03
3682 4116 0.679960 TCCGAGACGAGCTGATTCCA 60.680 55.000 0.00 0.00 0.00 3.53
3683 4117 0.173481 CCGAGACGAGCTGATTCCAA 59.827 55.000 0.00 0.00 0.00 3.53
3729 4164 1.072806 AGTGTGCAGAATCCTGAAGCA 59.927 47.619 0.00 0.00 43.02 3.91
3746 4181 1.584483 CAATGTCGGATGCTTGCGC 60.584 57.895 8.69 0.00 36.52 6.09
3766 4201 2.099098 GCCATTGTTTAATCCGGTGAGG 59.901 50.000 0.00 0.00 42.97 3.86
3982 4433 2.202756 GCGCTCCTGAACTACCGG 60.203 66.667 0.00 0.00 0.00 5.28
4159 4625 1.598130 GCAGAACAAGCTGGACGGT 60.598 57.895 0.00 0.00 36.41 4.83
4456 4934 4.268687 CACGACTTCTGGGTGCTC 57.731 61.111 0.00 0.00 0.00 4.26
4639 5120 4.802051 CCGCACCTCCACATGGGG 62.802 72.222 8.05 8.05 41.87 4.96
4757 5238 0.099613 CCACCTCTGATCGTGAGTCG 59.900 60.000 12.56 5.23 41.41 4.18
4786 5267 1.213926 CCCTTTATGAGAGCCTGGCTT 59.786 52.381 24.26 12.71 39.88 4.35
4836 5323 4.782195 GCGTTTGGTTACTGATGATTAGCG 60.782 45.833 0.00 0.00 0.00 4.26
4864 5351 6.483307 GGTTCTTCCATTTTTCCCTTTTCTTG 59.517 38.462 0.00 0.00 35.97 3.02
4895 5382 8.055279 TCTATTTTCCCTTCTTTGCTGTATTG 57.945 34.615 0.00 0.00 0.00 1.90
4928 5415 8.507249 AGTGAGATTGTATTTGTTAAGTGCTTC 58.493 33.333 0.00 0.00 0.00 3.86
4940 5427 5.221224 TGTTAAGTGCTTCTGATTTGTTGGG 60.221 40.000 0.00 0.00 0.00 4.12
4941 5428 2.242043 AGTGCTTCTGATTTGTTGGGG 58.758 47.619 0.00 0.00 0.00 4.96
4952 5439 1.265236 TTGTTGGGGTCATGGATTGC 58.735 50.000 0.00 0.00 0.00 3.56
4987 5474 1.172175 TTGCTCGGCATTAATGTGCA 58.828 45.000 16.61 16.89 46.81 4.57
4999 5486 1.620822 AATGTGCACTCCAAGGTTCC 58.379 50.000 19.41 0.00 0.00 3.62
5024 5515 5.665459 TCTTAGAATTCAAGCTCTGCCTAC 58.335 41.667 8.44 0.00 0.00 3.18
5031 5522 3.827898 GCTCTGCCTACGCGGTCT 61.828 66.667 12.47 0.00 42.47 3.85
5056 5547 1.086634 GCAGGTTCACGAGAGGATGC 61.087 60.000 0.00 0.00 0.00 3.91
5085 5576 0.956633 GGAACTCCAAACCCGAAACC 59.043 55.000 0.00 0.00 35.64 3.27
5086 5577 1.478105 GGAACTCCAAACCCGAAACCT 60.478 52.381 0.00 0.00 35.64 3.50
5087 5578 2.304092 GAACTCCAAACCCGAAACCTT 58.696 47.619 0.00 0.00 0.00 3.50
5088 5579 3.479489 GAACTCCAAACCCGAAACCTTA 58.521 45.455 0.00 0.00 0.00 2.69
5090 5581 3.682696 ACTCCAAACCCGAAACCTTATC 58.317 45.455 0.00 0.00 0.00 1.75
5091 5582 2.676342 CTCCAAACCCGAAACCTTATCG 59.324 50.000 0.00 0.00 39.92 2.92
5093 5584 1.131693 CAAACCCGAAACCTTATCGCC 59.868 52.381 0.00 0.00 38.93 5.54
5094 5585 0.325602 AACCCGAAACCTTATCGCCA 59.674 50.000 0.00 0.00 38.93 5.69
5096 5587 0.391927 CCCGAAACCTTATCGCCACA 60.392 55.000 0.00 0.00 38.93 4.17
5097 5588 1.444836 CCGAAACCTTATCGCCACAA 58.555 50.000 0.00 0.00 38.93 3.33
5098 5589 1.807742 CCGAAACCTTATCGCCACAAA 59.192 47.619 0.00 0.00 38.93 2.83
5099 5590 2.413634 CCGAAACCTTATCGCCACAAAC 60.414 50.000 0.00 0.00 38.93 2.93
5102 5593 2.561478 ACCTTATCGCCACAAACACT 57.439 45.000 0.00 0.00 0.00 3.55
5104 5595 1.393539 CCTTATCGCCACAAACACTCG 59.606 52.381 0.00 0.00 0.00 4.18
5105 5596 2.066262 CTTATCGCCACAAACACTCGT 58.934 47.619 0.00 0.00 0.00 4.18
5106 5597 1.424403 TATCGCCACAAACACTCGTG 58.576 50.000 0.00 0.00 0.00 4.35
5107 5598 1.841663 ATCGCCACAAACACTCGTGC 61.842 55.000 0.00 0.00 0.00 5.34
5133 5625 1.704641 GGCCATCCAAAACTATCCCC 58.295 55.000 0.00 0.00 0.00 4.81
5139 5631 6.311735 GCCATCCAAAACTATCCCCTAAATA 58.688 40.000 0.00 0.00 0.00 1.40
5142 5634 7.336931 CCATCCAAAACTATCCCCTAAATATCG 59.663 40.741 0.00 0.00 0.00 2.92
5150 5642 6.901300 ACTATCCCCTAAATATCGGCTCATAA 59.099 38.462 0.00 0.00 0.00 1.90
5151 5643 5.416271 TCCCCTAAATATCGGCTCATAAC 57.584 43.478 0.00 0.00 0.00 1.89
5152 5644 4.081862 TCCCCTAAATATCGGCTCATAACG 60.082 45.833 0.00 0.00 0.00 3.18
5153 5645 4.181578 CCCTAAATATCGGCTCATAACGG 58.818 47.826 0.00 0.00 0.00 4.44
5154 5646 4.322499 CCCTAAATATCGGCTCATAACGGT 60.322 45.833 0.00 0.00 0.00 4.83
5161 5653 8.836268 AATATCGGCTCATAACGGTTAATTTA 57.164 30.769 4.47 0.00 0.00 1.40
5178 5673 9.536558 GGTTAATTTAAAATTCAAAACCATCGC 57.463 29.630 0.00 0.00 36.11 4.58
5181 5676 3.651803 AAAATTCAAAACCATCGCGGA 57.348 38.095 6.13 0.00 38.63 5.54
5186 5681 1.466950 TCAAAACCATCGCGGAATCAC 59.533 47.619 6.13 0.00 38.63 3.06
5194 5689 2.522638 CGCGGAATCACGTTAGCCC 61.523 63.158 0.00 0.00 35.98 5.19
5196 5691 1.219664 CGGAATCACGTTAGCCCCA 59.780 57.895 0.00 0.00 0.00 4.96
5197 5692 0.391927 CGGAATCACGTTAGCCCCAA 60.392 55.000 0.00 0.00 0.00 4.12
5198 5693 1.745827 CGGAATCACGTTAGCCCCAAT 60.746 52.381 0.00 0.00 0.00 3.16
5199 5694 1.947456 GGAATCACGTTAGCCCCAATC 59.053 52.381 0.00 0.00 0.00 2.67
5200 5695 2.639065 GAATCACGTTAGCCCCAATCA 58.361 47.619 0.00 0.00 0.00 2.57
5201 5696 3.214328 GAATCACGTTAGCCCCAATCAT 58.786 45.455 0.00 0.00 0.00 2.45
5202 5697 4.385825 GAATCACGTTAGCCCCAATCATA 58.614 43.478 0.00 0.00 0.00 2.15
5203 5698 3.916359 TCACGTTAGCCCCAATCATAA 57.084 42.857 0.00 0.00 0.00 1.90
5204 5699 4.431416 TCACGTTAGCCCCAATCATAAT 57.569 40.909 0.00 0.00 0.00 1.28
5206 5701 5.931294 TCACGTTAGCCCCAATCATAATAA 58.069 37.500 0.00 0.00 0.00 1.40
5209 5704 7.339721 TCACGTTAGCCCCAATCATAATAAAAA 59.660 33.333 0.00 0.00 0.00 1.94
5249 5744 4.156008 AGTTTCTTTATGCCCGATCACAAC 59.844 41.667 0.00 0.00 0.00 3.32
5273 5768 2.375014 TATCAGTCCGGCAGTCCATA 57.625 50.000 0.00 0.00 0.00 2.74
5304 5799 6.581388 TTGGATTTTCTATCCTGATGGACT 57.419 37.500 5.48 0.00 46.51 3.85
5336 5831 0.716108 CTCCACGTTCAATCTGTCGC 59.284 55.000 0.00 0.00 0.00 5.19
5359 5854 2.685380 CCGTCTTGGCCTCCTCCT 60.685 66.667 3.32 0.00 0.00 3.69
5360 5855 2.294078 CCGTCTTGGCCTCCTCCTT 61.294 63.158 3.32 0.00 0.00 3.36
5361 5856 1.078848 CGTCTTGGCCTCCTCCTTG 60.079 63.158 3.32 0.00 0.00 3.61
5362 5857 1.831652 CGTCTTGGCCTCCTCCTTGT 61.832 60.000 3.32 0.00 0.00 3.16
5365 5860 1.463214 TTGGCCTCCTCCTTGTCCA 60.463 57.895 3.32 0.00 0.00 4.02
5402 5897 3.034635 GCTCCTCCAACTGATCCTTCTA 58.965 50.000 0.00 0.00 0.00 2.10
5405 5900 2.436173 CCTCCAACTGATCCTTCTACCC 59.564 54.545 0.00 0.00 0.00 3.69
5412 5907 6.183347 CAACTGATCCTTCTACCCTTTCAAT 58.817 40.000 0.00 0.00 0.00 2.57
5418 5913 9.447279 TGATCCTTCTACCCTTTCAATATCTTA 57.553 33.333 0.00 0.00 0.00 2.10
5437 5932 2.331019 AAAACGGACGGCTTGCACAC 62.331 55.000 0.00 0.00 0.00 3.82
5438 5933 4.539083 ACGGACGGCTTGCACACA 62.539 61.111 0.00 0.00 0.00 3.72
5439 5934 3.276091 CGGACGGCTTGCACACAA 61.276 61.111 0.00 0.00 0.00 3.33
5451 5962 3.788227 TGCACACAACTAAATCCTCCT 57.212 42.857 0.00 0.00 0.00 3.69
5491 6002 2.963371 GTCCTCCGAAGCGTCTGT 59.037 61.111 0.00 0.00 0.00 3.41
5525 6036 2.949451 TCTCTTCGAGCATGGTCTTC 57.051 50.000 21.73 0.00 0.00 2.87
5541 6056 4.068599 GGTCTTCCTCTCTTCAAGTTTGG 58.931 47.826 0.00 0.00 0.00 3.28
5553 6068 2.104111 TCAAGTTTGGGCTTCTTCTCGA 59.896 45.455 0.00 0.00 0.00 4.04
5583 6098 4.935205 CCATCAACATGTTAAACCTCTCGA 59.065 41.667 11.53 1.23 0.00 4.04
5588 6103 5.733620 ACATGTTAAACCTCTCGACCTTA 57.266 39.130 0.00 0.00 0.00 2.69
5598 6113 4.530946 ACCTCTCGACCTTATTTTTCCTCA 59.469 41.667 0.00 0.00 0.00 3.86
5623 6138 4.035909 TGACGTTAGAGCGCTTGACATATA 59.964 41.667 13.26 0.00 34.88 0.86
5624 6139 5.122512 ACGTTAGAGCGCTTGACATATAT 57.877 39.130 13.26 0.00 34.88 0.86
5631 6146 5.011533 AGAGCGCTTGACATATATCTCCTTT 59.988 40.000 13.26 0.00 0.00 3.11
5634 6151 4.993584 CGCTTGACATATATCTCCTTTGCT 59.006 41.667 0.00 0.00 0.00 3.91
5646 6163 6.814954 ATCTCCTTTGCTAAGATGTCCTTA 57.185 37.500 9.62 0.00 36.34 2.69
5653 6170 5.755409 TGCTAAGATGTCCTTAAACCTCA 57.245 39.130 0.00 0.00 36.95 3.86
5654 6171 6.313519 TGCTAAGATGTCCTTAAACCTCAT 57.686 37.500 0.00 0.00 36.95 2.90
5694 6211 0.109086 CTTCTCGCTTCGCCTTCTCA 60.109 55.000 0.00 0.00 0.00 3.27
5741 6261 1.165270 CTAACCTTCTTGGGCGGTTG 58.835 55.000 0.00 0.00 40.94 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.825972 ACGTGCAATGCATATATTAATACTTTC 57.174 29.630 12.38 0.00 41.91 2.62
69 70 9.430623 TGTACGTGCAATGCATATATTAATACT 57.569 29.630 12.38 0.00 41.91 2.12
80 81 6.618287 AGTAATTATGTACGTGCAATGCAT 57.382 33.333 12.38 0.00 41.91 3.96
98 99 7.556996 AGATGTCGACTTCCTGTAACTAGTAAT 59.443 37.037 23.49 0.76 0.00 1.89
258 264 8.924691 TGCATTGCTTTAGAATTGTTTATTGTC 58.075 29.630 10.49 0.00 0.00 3.18
262 268 7.871973 TGTGTGCATTGCTTTAGAATTGTTTAT 59.128 29.630 10.49 0.00 0.00 1.40
264 270 6.047870 TGTGTGCATTGCTTTAGAATTGTTT 58.952 32.000 10.49 0.00 0.00 2.83
320 329 1.959085 CGGGGATTATGCACATGGC 59.041 57.895 0.00 0.00 45.13 4.40
335 344 1.153086 CTGGGAGGAAAGATGCGGG 60.153 63.158 0.00 0.00 0.00 6.13
337 346 0.393537 AAGCTGGGAGGAAAGATGCG 60.394 55.000 0.00 0.00 0.00 4.73
349 358 3.306294 CCCTTTCTTTTGCTTAAGCTGGG 60.306 47.826 26.90 18.69 42.66 4.45
385 394 1.281353 CTAGCGTGCGTTTTTGGCA 59.719 52.632 0.00 0.00 38.25 4.92
386 395 2.080636 GCTAGCGTGCGTTTTTGGC 61.081 57.895 0.00 0.00 0.00 4.52
387 396 0.793861 TAGCTAGCGTGCGTTTTTGG 59.206 50.000 9.55 0.00 38.13 3.28
388 397 1.463528 GGTAGCTAGCGTGCGTTTTTG 60.464 52.381 9.55 0.00 38.13 2.44
393 402 1.153823 CTTGGTAGCTAGCGTGCGT 60.154 57.895 17.59 0.00 38.13 5.24
394 403 0.457853 TTCTTGGTAGCTAGCGTGCG 60.458 55.000 17.59 6.39 38.13 5.34
436 445 3.132467 GGACTACCTCATACCCTCACAAC 59.868 52.174 0.00 0.00 0.00 3.32
437 446 3.245839 TGGACTACCTCATACCCTCACAA 60.246 47.826 0.00 0.00 37.04 3.33
438 447 2.313643 TGGACTACCTCATACCCTCACA 59.686 50.000 0.00 0.00 37.04 3.58
439 448 2.959707 CTGGACTACCTCATACCCTCAC 59.040 54.545 0.00 0.00 37.04 3.51
440 449 2.690026 GCTGGACTACCTCATACCCTCA 60.690 54.545 0.00 0.00 37.04 3.86
441 450 1.964933 GCTGGACTACCTCATACCCTC 59.035 57.143 0.00 0.00 37.04 4.30
442 451 1.291033 TGCTGGACTACCTCATACCCT 59.709 52.381 0.00 0.00 37.04 4.34
443 452 1.689273 CTGCTGGACTACCTCATACCC 59.311 57.143 0.00 0.00 37.04 3.69
446 455 2.024369 TCCACTGCTGGACTACCTCATA 60.024 50.000 0.00 0.00 42.15 2.15
447 456 1.198713 CCACTGCTGGACTACCTCAT 58.801 55.000 0.00 0.00 40.55 2.90
448 457 0.114364 TCCACTGCTGGACTACCTCA 59.886 55.000 0.00 0.00 42.15 3.86
478 487 1.885887 GTTTTATGCAGTGGCCAGACA 59.114 47.619 5.11 4.94 40.13 3.41
521 530 1.507140 ATGGGAAATCTGGTCGCCTA 58.493 50.000 0.00 0.00 0.00 3.93
537 546 5.904941 TGCTTTTGCCAGTTCATATTATGG 58.095 37.500 3.89 0.00 46.87 2.74
538 547 5.461078 GCTGCTTTTGCCAGTTCATATTATG 59.539 40.000 0.00 0.00 46.87 1.90
539 548 5.127519 TGCTGCTTTTGCCAGTTCATATTAT 59.872 36.000 0.00 0.00 46.87 1.28
561 570 4.374843 TCATACCAGCATCATTTTGTGC 57.625 40.909 0.00 0.00 41.57 4.57
576 585 5.007724 CCAGCGAATAAAGAAGGTTCATACC 59.992 44.000 0.00 0.00 45.39 2.73
610 619 4.228912 ACTTTCTTGATTTTCCACTGCG 57.771 40.909 0.00 0.00 0.00 5.18
665 674 2.769602 ATAGGCCGTTTCCTAGAGGA 57.230 50.000 0.00 0.00 41.63 3.71
810 840 6.623486 CCTCAACAAATGATGCTGTTTCATA 58.377 36.000 0.00 0.00 37.44 2.15
813 843 3.676646 GCCTCAACAAATGATGCTGTTTC 59.323 43.478 0.00 0.00 43.81 2.78
832 862 1.438686 AAGGGCCCTCTCAAAAGCCT 61.439 55.000 28.84 0.92 45.07 4.58
891 921 0.035881 TTGAGACTGCTGAAGCCTGG 59.964 55.000 0.00 0.00 41.18 4.45
902 932 0.823460 GGAGGAGGCTCTTGAGACTG 59.177 60.000 15.23 0.00 0.00 3.51
903 933 0.325203 GGGAGGAGGCTCTTGAGACT 60.325 60.000 15.23 5.58 0.00 3.24
904 934 0.616111 TGGGAGGAGGCTCTTGAGAC 60.616 60.000 15.23 0.00 0.00 3.36
905 935 0.341258 ATGGGAGGAGGCTCTTGAGA 59.659 55.000 15.23 0.00 0.00 3.27
906 936 0.758123 GATGGGAGGAGGCTCTTGAG 59.242 60.000 15.23 0.00 0.00 3.02
907 937 0.692419 GGATGGGAGGAGGCTCTTGA 60.692 60.000 15.23 0.00 0.00 3.02
909 939 1.764054 CGGATGGGAGGAGGCTCTT 60.764 63.158 15.23 6.66 0.00 2.85
910 940 2.123077 CGGATGGGAGGAGGCTCT 60.123 66.667 15.23 0.00 0.00 4.09
914 946 1.153086 CAAAGCGGATGGGAGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
918 950 2.117156 CAGGCAAAGCGGATGGGAG 61.117 63.158 0.00 0.00 0.00 4.30
936 968 5.073428 AGGTTCAGACAATTTCTTTCCTCC 58.927 41.667 0.00 0.00 28.96 4.30
938 970 7.043961 GAAAGGTTCAGACAATTTCTTTCCT 57.956 36.000 0.00 0.00 35.16 3.36
939 971 6.216569 GGAAAGGTTCAGACAATTTCTTTCC 58.783 40.000 13.75 13.75 46.01 3.13
940 972 7.043961 AGGAAAGGTTCAGACAATTTCTTTC 57.956 36.000 0.00 0.00 38.37 2.62
941 973 6.040955 GGAGGAAAGGTTCAGACAATTTCTTT 59.959 38.462 0.00 0.00 35.25 2.52
952 984 4.625607 AGTAAGTGGAGGAAAGGTTCAG 57.374 45.455 0.00 0.00 0.00 3.02
1048 1085 4.531912 CTCCGCGCAATGCAGCAG 62.532 66.667 18.44 9.94 46.97 4.24
1078 1115 2.046892 CTCCCACTTGAGGTGCCG 60.047 66.667 0.00 0.00 44.08 5.69
1099 1136 2.690778 GCGACCAGAACATGTGGCC 61.691 63.158 0.00 0.00 38.83 5.36
1268 1305 1.327460 CATGCCGTGGTTAATCACTCG 59.673 52.381 16.56 7.72 35.63 4.18
1273 1310 1.064060 GTGCTCATGCCGTGGTTAATC 59.936 52.381 0.00 0.00 38.71 1.75
1283 1320 2.358615 TGACGGTGTGCTCATGCC 60.359 61.111 0.00 0.00 38.71 4.40
1305 1342 0.250295 TGCAACGGGGAAGAGACAAG 60.250 55.000 0.00 0.00 0.00 3.16
1328 1365 5.463061 GCAAAAGAACAAAAATCTGCTAGCA 59.537 36.000 18.22 18.22 0.00 3.49
1334 1371 6.044682 AGGTCAGCAAAAGAACAAAAATCTG 58.955 36.000 0.00 0.00 0.00 2.90
1340 1377 6.872920 ACATAAAGGTCAGCAAAAGAACAAA 58.127 32.000 0.00 0.00 0.00 2.83
1356 1393 6.573664 TGAAATGTCAGGACAACATAAAGG 57.426 37.500 6.17 0.00 45.41 3.11
1366 1403 7.652909 TGATTTTTGTTCATGAAATGTCAGGAC 59.347 33.333 10.35 0.00 43.91 3.85
1382 1419 5.486735 TCCAATCTGCCATGATTTTTGTT 57.513 34.783 0.00 0.00 34.77 2.83
1385 1422 4.497300 CGTTCCAATCTGCCATGATTTTT 58.503 39.130 0.00 0.00 34.77 1.94
1505 1542 2.095853 GTGCGTCATGTAGGTGATTTGG 59.904 50.000 0.00 0.00 0.00 3.28
1513 1550 2.159099 ACTATGGTGTGCGTCATGTAGG 60.159 50.000 0.00 0.00 0.00 3.18
1515 1552 3.258228 CAACTATGGTGTGCGTCATGTA 58.742 45.455 0.00 0.00 0.00 2.29
1517 1554 1.202065 GCAACTATGGTGTGCGTCATG 60.202 52.381 0.00 0.00 0.00 3.07
1518 1555 1.086696 GCAACTATGGTGTGCGTCAT 58.913 50.000 1.87 0.00 0.00 3.06
1519 1556 0.034756 AGCAACTATGGTGTGCGTCA 59.965 50.000 9.48 0.00 35.55 4.35
1520 1557 2.840974 AGCAACTATGGTGTGCGTC 58.159 52.632 9.48 0.00 35.55 5.19
1527 1564 2.558359 GTTTCTTGGCAGCAACTATGGT 59.442 45.455 0.00 0.00 37.91 3.55
1528 1565 2.821969 AGTTTCTTGGCAGCAACTATGG 59.178 45.455 6.32 0.00 35.03 2.74
1537 1581 5.287035 GCGATTAATTTCAGTTTCTTGGCAG 59.713 40.000 0.00 0.00 0.00 4.85
1571 1615 4.705337 AAGTTTTGCAACGGTTACTGAA 57.295 36.364 0.00 0.00 38.03 3.02
1575 1619 4.039703 GGAGAAAGTTTTGCAACGGTTAC 58.960 43.478 0.00 0.00 38.03 2.50
1576 1620 3.949113 AGGAGAAAGTTTTGCAACGGTTA 59.051 39.130 0.00 0.00 38.03 2.85
1580 1624 4.267690 GGAAAAGGAGAAAGTTTTGCAACG 59.732 41.667 0.00 0.00 38.03 4.10
1593 1637 8.683615 GTCAAACTAAAAAGAAGGAAAAGGAGA 58.316 33.333 0.00 0.00 0.00 3.71
1597 1641 9.639601 ACAAGTCAAACTAAAAAGAAGGAAAAG 57.360 29.630 0.00 0.00 0.00 2.27
1628 1681 2.440517 CCATCCATGGGTCAATCACA 57.559 50.000 13.02 0.00 44.31 3.58
1644 1697 3.612251 GCTGCAGCCATGAACCAT 58.388 55.556 28.76 0.00 34.31 3.55
1708 1761 2.055042 CAGAGAGCCGTACAGCCCT 61.055 63.158 0.00 0.00 0.00 5.19
1879 1932 6.734137 CAAGAGCATTAGTGTGGTTTTAACA 58.266 36.000 0.00 0.00 0.00 2.41
1894 1947 9.784531 AAACATACAGTATATAGCAAGAGCATT 57.215 29.630 0.00 0.00 45.49 3.56
1898 1951 9.265901 AGCAAAACATACAGTATATAGCAAGAG 57.734 33.333 0.00 0.00 0.00 2.85
1910 1963 5.248640 AGCAGACATAGCAAAACATACAGT 58.751 37.500 0.00 0.00 0.00 3.55
1911 1964 5.808042 AGCAGACATAGCAAAACATACAG 57.192 39.130 0.00 0.00 0.00 2.74
1912 1965 5.704978 TGAAGCAGACATAGCAAAACATACA 59.295 36.000 0.00 0.00 0.00 2.29
1913 1966 6.182039 TGAAGCAGACATAGCAAAACATAC 57.818 37.500 0.00 0.00 0.00 2.39
1914 1967 5.163723 GCTGAAGCAGACATAGCAAAACATA 60.164 40.000 0.00 0.00 41.59 2.29
1915 1968 4.380233 GCTGAAGCAGACATAGCAAAACAT 60.380 41.667 0.00 0.00 41.59 2.71
1917 1970 3.496155 GCTGAAGCAGACATAGCAAAAC 58.504 45.455 0.00 0.00 41.59 2.43
1918 1971 3.837213 GCTGAAGCAGACATAGCAAAA 57.163 42.857 0.00 0.00 41.59 2.44
1932 1985 3.979495 GTGAAAACTGCATCTTGCTGAAG 59.021 43.478 12.46 0.00 45.31 3.02
1951 2004 4.895668 AAATACCCTTTGTCTACGGTGA 57.104 40.909 0.00 0.00 0.00 4.02
1952 2005 4.155280 CCAAAATACCCTTTGTCTACGGTG 59.845 45.833 0.00 0.00 35.00 4.94
1953 2006 4.202493 ACCAAAATACCCTTTGTCTACGGT 60.202 41.667 0.00 0.00 35.00 4.83
1954 2007 4.329392 ACCAAAATACCCTTTGTCTACGG 58.671 43.478 0.00 0.00 35.00 4.02
1955 2008 5.583457 CCTACCAAAATACCCTTTGTCTACG 59.417 44.000 0.00 0.00 35.00 3.51
1958 2011 5.594199 ACCTACCAAAATACCCTTTGTCT 57.406 39.130 0.00 0.00 35.00 3.41
1965 2018 6.664384 TGTAAATCCAACCTACCAAAATACCC 59.336 38.462 0.00 0.00 0.00 3.69
1971 2024 4.083565 GGCTGTAAATCCAACCTACCAAA 58.916 43.478 0.00 0.00 0.00 3.28
1977 2030 1.992557 TCCTGGCTGTAAATCCAACCT 59.007 47.619 0.00 0.00 30.98 3.50
1992 2045 1.270550 GTGCATTTTGGACTGTCCTGG 59.729 52.381 26.03 12.45 37.46 4.45
2084 2139 2.442236 TGCCCTTTCCAAGATCATCC 57.558 50.000 0.00 0.00 0.00 3.51
2100 2155 2.893489 AGAAGAGGACAAACCAATTGCC 59.107 45.455 0.00 0.00 43.13 4.52
2161 2217 2.158561 AAAGCGCCCAATTCACCAGC 62.159 55.000 2.29 0.00 0.00 4.85
2256 2313 1.209621 TATTTTGGGACGGAGGGAGG 58.790 55.000 0.00 0.00 0.00 4.30
2257 2314 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2258 2315 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2259 2316 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2260 2317 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2261 2318 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2262 2319 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2263 2320 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2264 2321 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2265 2322 6.565999 CGAAGTTGAGTCACTTATTTTGGGAC 60.566 42.308 0.00 0.00 37.11 4.46
2266 2323 5.468746 CGAAGTTGAGTCACTTATTTTGGGA 59.531 40.000 0.00 0.00 37.11 4.37
2267 2324 5.334879 CCGAAGTTGAGTCACTTATTTTGGG 60.335 44.000 0.00 0.00 37.11 4.12
2268 2325 5.468746 TCCGAAGTTGAGTCACTTATTTTGG 59.531 40.000 0.00 0.00 37.11 3.28
2269 2326 6.202954 AGTCCGAAGTTGAGTCACTTATTTTG 59.797 38.462 0.00 0.00 37.11 2.44
2270 2327 6.289064 AGTCCGAAGTTGAGTCACTTATTTT 58.711 36.000 0.00 0.00 37.11 1.82
2271 2328 5.855045 AGTCCGAAGTTGAGTCACTTATTT 58.145 37.500 0.00 0.00 37.11 1.40
2272 2329 5.470047 AGTCCGAAGTTGAGTCACTTATT 57.530 39.130 0.00 0.00 37.11 1.40
2273 2330 6.585695 TTAGTCCGAAGTTGAGTCACTTAT 57.414 37.500 0.00 0.00 37.11 1.73
2274 2331 6.585695 ATTAGTCCGAAGTTGAGTCACTTA 57.414 37.500 0.00 0.00 37.11 2.24
2275 2332 4.931661 TTAGTCCGAAGTTGAGTCACTT 57.068 40.909 0.00 0.00 39.84 3.16
2276 2333 5.470047 AATTAGTCCGAAGTTGAGTCACT 57.530 39.130 0.00 0.00 0.00 3.41
2277 2334 6.541111 AAAATTAGTCCGAAGTTGAGTCAC 57.459 37.500 0.00 0.00 0.00 3.67
2278 2335 8.842358 ATTAAAATTAGTCCGAAGTTGAGTCA 57.158 30.769 0.00 0.00 0.00 3.41
2280 2337 9.715121 TGTATTAAAATTAGTCCGAAGTTGAGT 57.285 29.630 0.00 0.00 0.00 3.41
2320 2377 9.533253 CCTTTGTTTCAAAATAAGTGTCTCAAT 57.467 29.630 0.00 0.00 0.00 2.57
2321 2378 7.978975 CCCTTTGTTTCAAAATAAGTGTCTCAA 59.021 33.333 0.00 0.00 0.00 3.02
2322 2379 7.340743 TCCCTTTGTTTCAAAATAAGTGTCTCA 59.659 33.333 0.00 0.00 0.00 3.27
2323 2380 7.712797 TCCCTTTGTTTCAAAATAAGTGTCTC 58.287 34.615 0.00 0.00 0.00 3.36
2324 2381 7.654022 TCCCTTTGTTTCAAAATAAGTGTCT 57.346 32.000 0.00 0.00 0.00 3.41
2325 2382 6.420903 GCTCCCTTTGTTTCAAAATAAGTGTC 59.579 38.462 0.00 0.00 0.00 3.67
2326 2383 6.127196 TGCTCCCTTTGTTTCAAAATAAGTGT 60.127 34.615 0.00 0.00 0.00 3.55
2327 2384 6.279882 TGCTCCCTTTGTTTCAAAATAAGTG 58.720 36.000 0.00 0.00 0.00 3.16
2328 2385 6.478512 TGCTCCCTTTGTTTCAAAATAAGT 57.521 33.333 0.00 0.00 0.00 2.24
2329 2386 9.487790 TTTATGCTCCCTTTGTTTCAAAATAAG 57.512 29.630 0.00 0.00 0.00 1.73
2330 2387 9.487790 CTTTATGCTCCCTTTGTTTCAAAATAA 57.512 29.630 0.00 0.00 0.00 1.40
2331 2388 7.602265 GCTTTATGCTCCCTTTGTTTCAAAATA 59.398 33.333 0.00 0.00 38.95 1.40
2332 2389 6.427853 GCTTTATGCTCCCTTTGTTTCAAAAT 59.572 34.615 0.00 0.00 38.95 1.82
2333 2390 5.757808 GCTTTATGCTCCCTTTGTTTCAAAA 59.242 36.000 0.00 0.00 38.95 2.44
2334 2391 5.163364 TGCTTTATGCTCCCTTTGTTTCAAA 60.163 36.000 0.00 0.00 43.37 2.69
2335 2392 4.343526 TGCTTTATGCTCCCTTTGTTTCAA 59.656 37.500 0.00 0.00 43.37 2.69
2336 2393 3.894427 TGCTTTATGCTCCCTTTGTTTCA 59.106 39.130 0.00 0.00 43.37 2.69
2337 2394 4.519540 TGCTTTATGCTCCCTTTGTTTC 57.480 40.909 0.00 0.00 43.37 2.78
2338 2395 4.322953 CCATGCTTTATGCTCCCTTTGTTT 60.323 41.667 0.00 0.00 43.37 2.83
2339 2396 3.196254 CCATGCTTTATGCTCCCTTTGTT 59.804 43.478 0.00 0.00 43.37 2.83
2340 2397 2.762327 CCATGCTTTATGCTCCCTTTGT 59.238 45.455 0.00 0.00 43.37 2.83
2341 2398 2.482490 GCCATGCTTTATGCTCCCTTTG 60.482 50.000 0.00 0.00 43.37 2.77
2342 2399 1.758862 GCCATGCTTTATGCTCCCTTT 59.241 47.619 0.00 0.00 43.37 3.11
2343 2400 1.063417 AGCCATGCTTTATGCTCCCTT 60.063 47.619 0.00 0.00 43.37 3.95
2344 2401 0.554792 AGCCATGCTTTATGCTCCCT 59.445 50.000 0.00 0.00 43.37 4.20
2345 2402 1.882623 GTAGCCATGCTTTATGCTCCC 59.117 52.381 0.00 0.00 43.37 4.30
2346 2403 2.551459 CAGTAGCCATGCTTTATGCTCC 59.449 50.000 0.00 0.00 43.37 4.70
2347 2404 3.209410 ACAGTAGCCATGCTTTATGCTC 58.791 45.455 0.00 0.00 43.37 4.26
2348 2405 3.287867 ACAGTAGCCATGCTTTATGCT 57.712 42.857 0.00 0.00 43.37 3.79
2349 2406 4.376340 AAACAGTAGCCATGCTTTATGC 57.624 40.909 0.00 0.00 40.44 3.14
2350 2407 7.975616 ACAAATAAACAGTAGCCATGCTTTATG 59.024 33.333 0.00 0.00 40.44 1.90
2351 2408 8.066612 ACAAATAAACAGTAGCCATGCTTTAT 57.933 30.769 0.00 0.00 40.44 1.40
2352 2409 7.461182 ACAAATAAACAGTAGCCATGCTTTA 57.539 32.000 0.00 0.00 40.44 1.85
2366 2423 9.593134 AGCAAGTGTTTTCATAACAAATAAACA 57.407 25.926 0.00 0.00 36.63 2.83
2371 2428 7.981225 ACAAGAGCAAGTGTTTTCATAACAAAT 59.019 29.630 0.00 0.00 31.20 2.32
2436 2496 4.116238 GCTTAGCTTTAGTGACTAGCCTG 58.884 47.826 3.85 0.00 35.53 4.85
2441 2501 4.462834 TGCTCTGCTTAGCTTTAGTGACTA 59.537 41.667 5.60 0.00 43.19 2.59
2460 2520 1.034292 GGGTCTTTGAGGCCATGCTC 61.034 60.000 5.01 0.00 43.30 4.26
2626 2992 8.021396 GTGTGTCTCTTTTACTTTTTGAAGTGT 58.979 33.333 2.25 0.00 34.37 3.55
2638 3004 7.277981 CCTATACATGGTGTGTGTCTCTTTTAC 59.722 40.741 0.00 0.00 42.24 2.01
2639 3005 7.179516 TCCTATACATGGTGTGTGTCTCTTTTA 59.820 37.037 0.00 0.00 42.24 1.52
2644 3011 4.441634 GGTCCTATACATGGTGTGTGTCTC 60.442 50.000 0.00 0.00 42.24 3.36
2667 3034 2.039084 ACTGGTCTTGAGCCTACAAAGG 59.961 50.000 0.00 0.00 46.76 3.11
2691 3058 8.783833 ATACTTTAGGCATTAGCACAGATATG 57.216 34.615 0.00 0.00 44.61 1.78
2696 3063 6.283694 TCTGATACTTTAGGCATTAGCACAG 58.716 40.000 0.00 0.00 44.61 3.66
2715 3082 5.795972 CATAGGAACATGATCTGCTCTGAT 58.204 41.667 0.00 0.00 0.00 2.90
2721 3088 3.208594 TGTGCATAGGAACATGATCTGC 58.791 45.455 0.00 4.14 0.00 4.26
2741 3108 3.689309 TTGTAATGTGTGTGTGTGCTG 57.311 42.857 0.00 0.00 0.00 4.41
2742 3109 4.916983 ATTTGTAATGTGTGTGTGTGCT 57.083 36.364 0.00 0.00 0.00 4.40
2788 3179 2.964464 TGAAAATCATGTGGCCTTGTGT 59.036 40.909 3.32 0.00 0.00 3.72
2895 3286 1.530891 ATCATGCATCTGCCCAGGC 60.531 57.895 0.38 0.38 41.18 4.85
2896 3287 1.806461 GCATCATGCATCTGCCCAGG 61.806 60.000 16.54 0.00 44.26 4.45
2897 3288 1.660355 GCATCATGCATCTGCCCAG 59.340 57.895 16.54 0.00 44.26 4.45
2898 3289 3.850508 GCATCATGCATCTGCCCA 58.149 55.556 16.54 0.00 44.26 5.36
3181 3584 4.998671 TCAATTTTCAAACACTCCAGCA 57.001 36.364 0.00 0.00 0.00 4.41
3182 3585 5.176223 CACATCAATTTTCAAACACTCCAGC 59.824 40.000 0.00 0.00 0.00 4.85
3186 3597 7.754069 TCAACACATCAATTTTCAAACACTC 57.246 32.000 0.00 0.00 0.00 3.51
3221 3632 1.264288 CACTTCCACTTGTCTTTCGGC 59.736 52.381 0.00 0.00 0.00 5.54
3245 3661 4.580167 TGTGTCATTGCCCAATATCTTAGC 59.420 41.667 0.00 0.00 0.00 3.09
3249 3665 2.954318 GCTGTGTCATTGCCCAATATCT 59.046 45.455 0.00 0.00 0.00 1.98
3250 3666 2.689471 TGCTGTGTCATTGCCCAATATC 59.311 45.455 0.00 0.00 0.00 1.63
3272 3696 5.128499 AGGTGACCAGAGATTCAGATTACAG 59.872 44.000 3.63 0.00 0.00 2.74
3356 3788 7.435068 ACAGCGTCTGACATAATAAAAAGTT 57.565 32.000 8.73 0.00 35.18 2.66
3358 3790 8.015087 TCAAACAGCGTCTGACATAATAAAAAG 58.985 33.333 8.73 0.00 35.18 2.27
3360 3792 7.428282 TCAAACAGCGTCTGACATAATAAAA 57.572 32.000 8.73 0.00 35.18 1.52
3361 3793 7.119116 ACATCAAACAGCGTCTGACATAATAAA 59.881 33.333 8.73 0.00 35.18 1.40
3362 3794 6.593770 ACATCAAACAGCGTCTGACATAATAA 59.406 34.615 8.73 0.00 35.18 1.40
3363 3795 6.106003 ACATCAAACAGCGTCTGACATAATA 58.894 36.000 8.73 0.00 35.18 0.98
3364 3796 4.937620 ACATCAAACAGCGTCTGACATAAT 59.062 37.500 8.73 0.00 35.18 1.28
3393 3826 1.280133 CCAGGCAGAATCTCCAGACAA 59.720 52.381 0.00 0.00 0.00 3.18
3413 3846 1.816224 TGCCGTTAGCCCAAAGAAATC 59.184 47.619 0.00 0.00 42.71 2.17
3418 3852 2.867472 CGTGCCGTTAGCCCAAAG 59.133 61.111 0.00 0.00 42.71 2.77
3446 3880 0.461870 ACGACTGCAGCACAACAAGA 60.462 50.000 15.27 0.00 0.00 3.02
3578 4012 1.150536 GGTCTTGTTGGGCTGGACA 59.849 57.895 0.00 0.00 0.00 4.02
3582 4016 1.611673 CCTGTAGGTCTTGTTGGGCTG 60.612 57.143 0.00 0.00 0.00 4.85
3606 4040 4.101448 GGTGGTGCTGGCGATCCT 62.101 66.667 0.00 0.00 0.00 3.24
3632 4066 1.066587 GATCGCGAGGTTGAGGGAG 59.933 63.158 16.66 0.00 32.91 4.30
3671 4105 8.897752 ACTGTTTTATTATCTTGGAATCAGCTC 58.102 33.333 0.00 0.00 0.00 4.09
3672 4106 8.814038 ACTGTTTTATTATCTTGGAATCAGCT 57.186 30.769 0.00 0.00 0.00 4.24
3713 4147 2.751259 GACATTGCTTCAGGATTCTGCA 59.249 45.455 0.00 0.00 40.69 4.41
3746 4181 3.352648 ACCTCACCGGATTAAACAATGG 58.647 45.455 9.46 0.00 36.31 3.16
3967 4418 2.187163 GGCCGGTAGTTCAGGAGC 59.813 66.667 1.90 0.00 33.18 4.70
4786 5267 1.371183 CACAAGACGGAGAGGCCAA 59.629 57.895 5.01 0.00 35.94 4.52
4836 5323 3.779444 AGGGAAAAATGGAAGAACCCTC 58.221 45.455 0.00 0.00 41.86 4.30
4870 5357 7.669722 ACAATACAGCAAAGAAGGGAAAATAGA 59.330 33.333 0.00 0.00 0.00 1.98
4872 5359 7.775053 ACAATACAGCAAAGAAGGGAAAATA 57.225 32.000 0.00 0.00 0.00 1.40
4895 5382 7.923414 AACAAATACAATCTCACTCCCTAAC 57.077 36.000 0.00 0.00 0.00 2.34
4928 5415 2.806434 TCCATGACCCCAACAAATCAG 58.194 47.619 0.00 0.00 0.00 2.90
4940 5427 2.676632 TTGCATTGCAATCCATGACC 57.323 45.000 19.77 0.00 43.99 4.02
4987 5474 6.012508 TGAATTCTAAGATGGAACCTTGGAGT 60.013 38.462 7.05 0.00 33.67 3.85
4999 5486 5.124645 AGGCAGAGCTTGAATTCTAAGATG 58.875 41.667 16.82 13.11 0.00 2.90
5024 5515 3.777925 CCTGCAAACGAGACCGCG 61.778 66.667 0.00 0.00 39.95 6.46
5031 5522 0.103390 TCTCGTGAACCTGCAAACGA 59.897 50.000 0.00 7.65 42.30 3.85
5056 5547 0.679505 TTGGAGTTCCTCAGTCGTGG 59.320 55.000 0.00 0.00 36.82 4.94
5079 5570 2.224549 TGTTTGTGGCGATAAGGTTTCG 59.775 45.455 0.00 0.00 39.55 3.46
5082 5573 2.812011 GAGTGTTTGTGGCGATAAGGTT 59.188 45.455 0.00 0.00 0.00 3.50
5085 5576 2.066262 ACGAGTGTTTGTGGCGATAAG 58.934 47.619 0.00 0.00 0.00 1.73
5086 5577 1.795872 CACGAGTGTTTGTGGCGATAA 59.204 47.619 0.00 0.00 35.42 1.75
5087 5578 1.424403 CACGAGTGTTTGTGGCGATA 58.576 50.000 0.00 0.00 35.42 2.92
5088 5579 1.841663 GCACGAGTGTTTGTGGCGAT 61.842 55.000 5.07 0.00 38.85 4.58
5090 5581 2.052237 GCACGAGTGTTTGTGGCG 60.052 61.111 5.07 0.00 38.85 5.69
5133 5625 7.878477 TTAACCGTTATGAGCCGATATTTAG 57.122 36.000 0.00 0.00 0.00 1.85
5139 5631 7.556733 TTTAAATTAACCGTTATGAGCCGAT 57.443 32.000 0.00 0.00 0.00 4.18
5142 5634 9.575783 TGAATTTTAAATTAACCGTTATGAGCC 57.424 29.630 2.65 0.00 0.00 4.70
5151 5643 9.734269 CGATGGTTTTGAATTTTAAATTAACCG 57.266 29.630 19.88 10.56 0.00 4.44
5152 5644 9.536558 GCGATGGTTTTGAATTTTAAATTAACC 57.463 29.630 19.08 19.08 0.00 2.85
5153 5645 9.245284 CGCGATGGTTTTGAATTTTAAATTAAC 57.755 29.630 0.00 4.77 0.00 2.01
5154 5646 8.436200 CCGCGATGGTTTTGAATTTTAAATTAA 58.564 29.630 8.23 0.00 0.00 1.40
5161 5653 3.651803 TCCGCGATGGTTTTGAATTTT 57.348 38.095 8.23 0.00 39.52 1.82
5178 5673 0.391927 TTGGGGCTAACGTGATTCCG 60.392 55.000 0.00 0.00 0.00 4.30
5181 5676 2.799126 TGATTGGGGCTAACGTGATT 57.201 45.000 0.00 0.00 0.00 2.57
5231 5726 3.270027 TCTGTTGTGATCGGGCATAAAG 58.730 45.455 0.00 0.00 0.00 1.85
5233 5728 3.342377 TTCTGTTGTGATCGGGCATAA 57.658 42.857 0.00 0.00 0.00 1.90
5234 5729 3.558931 ATTCTGTTGTGATCGGGCATA 57.441 42.857 0.00 0.00 0.00 3.14
5249 5744 2.546795 GGACTGCCGGACTGATATTCTG 60.547 54.545 5.05 0.00 0.00 3.02
5354 5849 3.316573 GAGGCGGTGGACAAGGAGG 62.317 68.421 0.00 0.00 0.00 4.30
5355 5850 2.266055 GAGGCGGTGGACAAGGAG 59.734 66.667 0.00 0.00 0.00 3.69
5356 5851 3.319198 GGAGGCGGTGGACAAGGA 61.319 66.667 0.00 0.00 0.00 3.36
5357 5852 2.895424 AAGGAGGCGGTGGACAAGG 61.895 63.158 0.00 0.00 0.00 3.61
5358 5853 1.672356 CAAGGAGGCGGTGGACAAG 60.672 63.158 0.00 0.00 0.00 3.16
5359 5854 2.391724 GACAAGGAGGCGGTGGACAA 62.392 60.000 0.00 0.00 0.00 3.18
5360 5855 2.847234 ACAAGGAGGCGGTGGACA 60.847 61.111 0.00 0.00 0.00 4.02
5361 5856 2.047179 GACAAGGAGGCGGTGGAC 60.047 66.667 0.00 0.00 0.00 4.02
5362 5857 3.319198 GGACAAGGAGGCGGTGGA 61.319 66.667 0.00 0.00 0.00 4.02
5383 5878 3.375699 GGTAGAAGGATCAGTTGGAGGA 58.624 50.000 0.00 0.00 0.00 3.71
5402 5897 6.093082 CGTCCGTTTTAAGATATTGAAAGGGT 59.907 38.462 21.26 0.00 37.91 4.34
5405 5900 5.963586 GCCGTCCGTTTTAAGATATTGAAAG 59.036 40.000 0.00 0.00 0.00 2.62
5412 5907 2.674357 GCAAGCCGTCCGTTTTAAGATA 59.326 45.455 0.00 0.00 0.00 1.98
5418 5913 2.115911 TGTGCAAGCCGTCCGTTTT 61.116 52.632 0.00 0.00 0.00 2.43
5423 5918 0.882927 TAGTTGTGTGCAAGCCGTCC 60.883 55.000 0.00 0.00 34.94 4.79
5451 5962 2.813754 CGAAGATGTTGGCCTTGAAGAA 59.186 45.455 3.32 0.00 0.00 2.52
5461 5972 1.084370 GGAGGACGCGAAGATGTTGG 61.084 60.000 15.93 0.00 0.00 3.77
5487 5998 7.479352 AAGAGAAGAAGATTGAGATCACAGA 57.521 36.000 0.00 0.00 34.60 3.41
5491 6002 6.765915 TCGAAGAGAAGAAGATTGAGATCA 57.234 37.500 0.00 0.00 34.60 2.92
5525 6036 2.575805 AGCCCAAACTTGAAGAGAGG 57.424 50.000 0.00 0.00 0.00 3.69
5541 6056 1.946650 CGGCGATCGAGAAGAAGCC 60.947 63.158 21.57 6.61 46.45 4.35
5553 6068 1.031571 AACATGTTGATGGCGGCGAT 61.032 50.000 12.98 0.00 33.39 4.58
5583 6098 6.894339 AACGTCAATGAGGAAAAATAAGGT 57.106 33.333 10.12 0.00 0.00 3.50
5588 6103 5.163854 CGCTCTAACGTCAATGAGGAAAAAT 60.164 40.000 10.12 0.00 0.00 1.82
5598 6113 1.993370 GTCAAGCGCTCTAACGTCAAT 59.007 47.619 12.06 0.00 34.88 2.57
5623 6138 5.707066 AAGGACATCTTAGCAAAGGAGAT 57.293 39.130 0.00 0.00 33.14 2.75
5624 6139 6.620877 TTAAGGACATCTTAGCAAAGGAGA 57.379 37.500 0.00 0.00 38.96 3.71
5631 6146 5.755409 TGAGGTTTAAGGACATCTTAGCA 57.245 39.130 0.00 0.00 38.96 3.49
5634 6151 6.153851 TGACGATGAGGTTTAAGGACATCTTA 59.846 38.462 0.00 0.00 36.93 2.10
5646 6163 2.359900 GCCAAGATGACGATGAGGTTT 58.640 47.619 0.00 0.00 0.00 3.27
5653 6170 2.203070 GGCGGCCAAGATGACGAT 60.203 61.111 15.62 0.00 0.00 3.73
5654 6171 4.812476 CGGCGGCCAAGATGACGA 62.812 66.667 20.71 0.00 0.00 4.20
5688 6205 4.006319 GGTGAAAGAAGTGGGATGAGAAG 58.994 47.826 0.00 0.00 0.00 2.85
5694 6211 1.358152 TCCGGTGAAAGAAGTGGGAT 58.642 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.