Multiple sequence alignment - TraesCS7A01G361100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G361100 chr7A 100.000 2910 0 0 1 2910 534765210 534768119 0.000000e+00 5374
1 TraesCS7A01G361100 chr7A 80.531 1017 114 49 832 1818 535272593 535273555 0.000000e+00 704
2 TraesCS7A01G361100 chr7A 80.940 787 92 16 1030 1795 535590765 535591514 1.170000e-158 569
3 TraesCS7A01G361100 chr7A 94.260 331 19 0 2 332 450095868 450095538 9.310000e-140 507
4 TraesCS7A01G361100 chr7D 93.125 2618 111 30 333 2910 464948573 464945985 0.000000e+00 3773
5 TraesCS7A01G361100 chr7D 78.877 1193 137 65 832 1981 464361599 464360479 0.000000e+00 701
6 TraesCS7A01G361100 chr7D 81.165 807 90 22 1007 1790 464137836 464137069 2.500000e-165 592
7 TraesCS7A01G361100 chr7B 80.870 805 91 27 1008 1790 489552317 489551554 2.510000e-160 575
8 TraesCS7A01G361100 chr7B 78.557 998 108 61 1025 1981 489781332 489780400 7.040000e-156 560
9 TraesCS7A01G361100 chr3A 93.393 333 22 0 2 334 212228546 212228878 7.240000e-136 494
10 TraesCS7A01G361100 chr3A 93.353 331 21 1 3 332 377137474 377137804 3.370000e-134 488
11 TraesCS7A01G361100 chr1D 93.393 333 20 1 2 332 74734663 74734995 2.610000e-135 492
12 TraesCS7A01G361100 chr1D 92.330 339 25 1 2 339 308485084 308485422 5.640000e-132 481
13 TraesCS7A01G361100 chr5A 93.155 336 20 3 2 335 387341647 387341981 9.370000e-135 490
14 TraesCS7A01G361100 chr2D 93.353 331 22 0 2 332 73332827 73333157 9.370000e-135 490
15 TraesCS7A01G361100 chr6A 93.353 331 21 1 2 332 526721961 526721632 3.370000e-134 488
16 TraesCS7A01G361100 chr2A 92.836 335 24 0 4 338 468582589 468582255 1.210000e-133 486


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G361100 chr7A 534765210 534768119 2909 False 5374 5374 100.000 1 2910 1 chr7A.!!$F1 2909
1 TraesCS7A01G361100 chr7A 535272593 535273555 962 False 704 704 80.531 832 1818 1 chr7A.!!$F2 986
2 TraesCS7A01G361100 chr7A 535590765 535591514 749 False 569 569 80.940 1030 1795 1 chr7A.!!$F3 765
3 TraesCS7A01G361100 chr7D 464945985 464948573 2588 True 3773 3773 93.125 333 2910 1 chr7D.!!$R3 2577
4 TraesCS7A01G361100 chr7D 464360479 464361599 1120 True 701 701 78.877 832 1981 1 chr7D.!!$R2 1149
5 TraesCS7A01G361100 chr7D 464137069 464137836 767 True 592 592 81.165 1007 1790 1 chr7D.!!$R1 783
6 TraesCS7A01G361100 chr7B 489551554 489552317 763 True 575 575 80.870 1008 1790 1 chr7B.!!$R1 782
7 TraesCS7A01G361100 chr7B 489780400 489781332 932 True 560 560 78.557 1025 1981 1 chr7B.!!$R2 956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.035439 CCCTGTGCCGGTAACTTCAT 60.035 55.0 1.9 0.0 0.00 2.57 F
146 147 0.104855 TATGCAGATCACGGAGGTGC 59.895 55.0 0.0 0.0 44.03 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1827 0.907230 GTGGAGCCTCTTCTGGGAGT 60.907 60.0 0.0 0.0 0.0 3.85 R
2143 2241 0.108329 ATACAAACCCGCACGAGAGG 60.108 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.959275 CCGTAGTGCTTAGGCGAAG 58.041 57.895 2.68 2.68 42.25 3.79
31 32 4.077184 CGAAGCCCTGTGCCGGTA 62.077 66.667 1.90 0.00 42.71 4.02
32 33 2.349755 GAAGCCCTGTGCCGGTAA 59.650 61.111 1.90 0.00 42.71 2.85
33 34 2.033602 AAGCCCTGTGCCGGTAAC 59.966 61.111 1.90 2.41 42.71 2.50
34 35 2.465055 GAAGCCCTGTGCCGGTAACT 62.465 60.000 1.90 0.00 42.71 2.24
35 36 2.033602 GCCCTGTGCCGGTAACTT 59.966 61.111 1.90 0.00 0.00 2.66
36 37 2.038837 GCCCTGTGCCGGTAACTTC 61.039 63.158 1.90 0.00 0.00 3.01
37 38 1.373435 CCCTGTGCCGGTAACTTCA 59.627 57.895 1.90 0.00 0.00 3.02
38 39 0.035439 CCCTGTGCCGGTAACTTCAT 60.035 55.000 1.90 0.00 0.00 2.57
39 40 1.369625 CCTGTGCCGGTAACTTCATC 58.630 55.000 1.90 0.00 0.00 2.92
40 41 1.066143 CCTGTGCCGGTAACTTCATCT 60.066 52.381 1.90 0.00 0.00 2.90
41 42 2.615493 CCTGTGCCGGTAACTTCATCTT 60.615 50.000 1.90 0.00 0.00 2.40
42 43 2.673368 CTGTGCCGGTAACTTCATCTTC 59.327 50.000 1.90 0.00 0.00 2.87
43 44 2.037902 TGTGCCGGTAACTTCATCTTCA 59.962 45.455 1.90 0.00 0.00 3.02
44 45 2.415512 GTGCCGGTAACTTCATCTTCAC 59.584 50.000 1.90 0.00 0.00 3.18
45 46 2.007608 GCCGGTAACTTCATCTTCACC 58.992 52.381 1.90 0.00 0.00 4.02
46 47 2.268298 CCGGTAACTTCATCTTCACCG 58.732 52.381 4.05 4.05 46.43 4.94
47 48 2.353406 CCGGTAACTTCATCTTCACCGT 60.353 50.000 9.78 0.00 45.65 4.83
48 49 2.921754 CGGTAACTTCATCTTCACCGTC 59.078 50.000 2.91 0.00 42.93 4.79
49 50 3.613193 CGGTAACTTCATCTTCACCGTCA 60.613 47.826 2.91 0.00 42.93 4.35
50 51 4.312443 GGTAACTTCATCTTCACCGTCAA 58.688 43.478 0.00 0.00 0.00 3.18
51 52 4.151867 GGTAACTTCATCTTCACCGTCAAC 59.848 45.833 0.00 0.00 0.00 3.18
52 53 3.469008 ACTTCATCTTCACCGTCAACA 57.531 42.857 0.00 0.00 0.00 3.33
53 54 3.131396 ACTTCATCTTCACCGTCAACAC 58.869 45.455 0.00 0.00 0.00 3.32
54 55 1.778334 TCATCTTCACCGTCAACACG 58.222 50.000 0.00 0.00 46.29 4.49
55 56 0.163788 CATCTTCACCGTCAACACGC 59.836 55.000 0.00 0.00 45.29 5.34
56 57 0.949105 ATCTTCACCGTCAACACGCC 60.949 55.000 0.00 0.00 45.29 5.68
57 58 2.938823 CTTCACCGTCAACACGCCG 61.939 63.158 0.00 0.00 45.29 6.46
58 59 3.719883 TTCACCGTCAACACGCCGT 62.720 57.895 0.00 0.00 45.29 5.68
59 60 3.698463 CACCGTCAACACGCCGTC 61.698 66.667 0.00 0.00 45.29 4.79
79 80 2.745515 GTGCTAACGAAACTCTCCCT 57.254 50.000 0.00 0.00 0.00 4.20
80 81 2.608268 GTGCTAACGAAACTCTCCCTC 58.392 52.381 0.00 0.00 0.00 4.30
81 82 2.029290 GTGCTAACGAAACTCTCCCTCA 60.029 50.000 0.00 0.00 0.00 3.86
82 83 2.231478 TGCTAACGAAACTCTCCCTCAG 59.769 50.000 0.00 0.00 0.00 3.35
83 84 2.882324 CTAACGAAACTCTCCCTCAGC 58.118 52.381 0.00 0.00 0.00 4.26
84 85 0.321996 AACGAAACTCTCCCTCAGCC 59.678 55.000 0.00 0.00 0.00 4.85
85 86 0.543174 ACGAAACTCTCCCTCAGCCT 60.543 55.000 0.00 0.00 0.00 4.58
86 87 0.174617 CGAAACTCTCCCTCAGCCTC 59.825 60.000 0.00 0.00 0.00 4.70
87 88 1.270907 GAAACTCTCCCTCAGCCTCA 58.729 55.000 0.00 0.00 0.00 3.86
88 89 1.625818 GAAACTCTCCCTCAGCCTCAA 59.374 52.381 0.00 0.00 0.00 3.02
89 90 0.980423 AACTCTCCCTCAGCCTCAAC 59.020 55.000 0.00 0.00 0.00 3.18
90 91 0.116143 ACTCTCCCTCAGCCTCAACT 59.884 55.000 0.00 0.00 0.00 3.16
91 92 0.536260 CTCTCCCTCAGCCTCAACTG 59.464 60.000 0.00 0.00 39.12 3.16
92 93 0.906756 TCTCCCTCAGCCTCAACTGG 60.907 60.000 0.00 0.00 38.26 4.00
93 94 0.906756 CTCCCTCAGCCTCAACTGGA 60.907 60.000 0.00 0.00 38.26 3.86
94 95 0.252881 TCCCTCAGCCTCAACTGGAT 60.253 55.000 0.00 0.00 38.26 3.41
95 96 0.179936 CCCTCAGCCTCAACTGGATC 59.820 60.000 0.00 0.00 38.26 3.36
96 97 0.907486 CCTCAGCCTCAACTGGATCA 59.093 55.000 0.00 0.00 38.26 2.92
97 98 1.280133 CCTCAGCCTCAACTGGATCAA 59.720 52.381 0.00 0.00 38.26 2.57
98 99 2.630158 CTCAGCCTCAACTGGATCAAG 58.370 52.381 0.00 0.00 38.26 3.02
99 100 2.235650 CTCAGCCTCAACTGGATCAAGA 59.764 50.000 3.42 0.00 38.26 3.02
100 101 2.235650 TCAGCCTCAACTGGATCAAGAG 59.764 50.000 3.42 0.00 38.26 2.85
101 102 2.027377 CAGCCTCAACTGGATCAAGAGT 60.027 50.000 3.42 0.00 33.85 3.24
102 103 3.196469 CAGCCTCAACTGGATCAAGAGTA 59.804 47.826 3.42 0.00 33.85 2.59
103 104 3.196685 AGCCTCAACTGGATCAAGAGTAC 59.803 47.826 3.42 0.00 0.00 2.73
104 105 3.775202 CCTCAACTGGATCAAGAGTACG 58.225 50.000 3.42 0.00 0.00 3.67
105 106 3.444034 CCTCAACTGGATCAAGAGTACGA 59.556 47.826 3.42 0.00 0.00 3.43
106 107 4.439426 CCTCAACTGGATCAAGAGTACGAG 60.439 50.000 3.42 7.41 0.00 4.18
107 108 3.444034 TCAACTGGATCAAGAGTACGAGG 59.556 47.826 3.42 0.00 0.00 4.63
108 109 2.379972 ACTGGATCAAGAGTACGAGGG 58.620 52.381 3.42 0.00 0.00 4.30
109 110 2.025226 ACTGGATCAAGAGTACGAGGGA 60.025 50.000 3.42 0.00 0.00 4.20
110 111 2.359531 CTGGATCAAGAGTACGAGGGAC 59.640 54.545 0.00 0.00 0.00 4.46
120 121 4.477975 CGAGGGACGTCACCGAGC 62.478 72.222 15.74 8.48 37.88 5.03
121 122 3.063084 GAGGGACGTCACCGAGCT 61.063 66.667 15.74 0.00 37.88 4.09
122 123 3.343788 GAGGGACGTCACCGAGCTG 62.344 68.421 15.74 0.00 37.88 4.24
123 124 3.371063 GGGACGTCACCGAGCTGA 61.371 66.667 18.91 0.00 37.88 4.26
124 125 2.649034 GGACGTCACCGAGCTGAA 59.351 61.111 18.91 0.00 37.88 3.02
125 126 1.733399 GGACGTCACCGAGCTGAAC 60.733 63.158 18.91 0.00 37.88 3.18
126 127 2.050351 ACGTCACCGAGCTGAACG 60.050 61.111 0.00 0.00 37.88 3.95
127 128 2.050351 CGTCACCGAGCTGAACGT 60.050 61.111 0.00 0.00 35.63 3.99
128 129 1.208358 CGTCACCGAGCTGAACGTA 59.792 57.895 0.00 0.00 35.63 3.57
129 130 0.179171 CGTCACCGAGCTGAACGTAT 60.179 55.000 0.00 0.00 35.63 3.06
130 131 1.269166 GTCACCGAGCTGAACGTATG 58.731 55.000 0.00 0.00 0.00 2.39
131 132 0.457853 TCACCGAGCTGAACGTATGC 60.458 55.000 0.00 0.00 0.00 3.14
132 133 0.735978 CACCGAGCTGAACGTATGCA 60.736 55.000 0.00 0.00 0.00 3.96
133 134 0.458543 ACCGAGCTGAACGTATGCAG 60.459 55.000 0.00 8.82 35.28 4.41
134 135 0.179137 CCGAGCTGAACGTATGCAGA 60.179 55.000 14.79 0.00 34.06 4.26
135 136 1.536922 CCGAGCTGAACGTATGCAGAT 60.537 52.381 14.79 9.68 34.06 2.90
136 137 1.783711 CGAGCTGAACGTATGCAGATC 59.216 52.381 16.53 16.53 42.42 2.75
137 138 2.796032 CGAGCTGAACGTATGCAGATCA 60.796 50.000 22.44 7.60 45.18 2.92
138 139 2.537625 GAGCTGAACGTATGCAGATCAC 59.462 50.000 19.72 4.27 44.53 3.06
139 140 1.256376 GCTGAACGTATGCAGATCACG 59.744 52.381 14.79 10.29 41.32 4.35
140 141 1.854743 CTGAACGTATGCAGATCACGG 59.145 52.381 14.71 0.00 39.91 4.94
141 142 1.474879 TGAACGTATGCAGATCACGGA 59.525 47.619 14.71 0.00 39.91 4.69
142 143 2.120232 GAACGTATGCAGATCACGGAG 58.880 52.381 14.71 0.00 39.91 4.63
143 144 0.385751 ACGTATGCAGATCACGGAGG 59.614 55.000 14.71 0.00 39.91 4.30
144 145 0.385751 CGTATGCAGATCACGGAGGT 59.614 55.000 0.00 0.00 32.19 3.85
145 146 1.858091 GTATGCAGATCACGGAGGTG 58.142 55.000 0.00 0.00 45.78 4.00
146 147 0.104855 TATGCAGATCACGGAGGTGC 59.895 55.000 0.00 0.00 44.03 5.01
147 148 2.512515 GCAGATCACGGAGGTGCC 60.513 66.667 0.00 0.00 44.03 5.01
163 164 3.152703 CCGTGCGTTCGGTACTTG 58.847 61.111 11.17 0.00 44.77 3.16
164 165 1.372004 CCGTGCGTTCGGTACTTGA 60.372 57.895 11.17 0.00 44.77 3.02
165 166 0.734942 CCGTGCGTTCGGTACTTGAT 60.735 55.000 11.17 0.00 44.77 2.57
166 167 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
167 168 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
168 169 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
169 170 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
170 171 1.986698 CGTTCGGTACTTGATCGGTT 58.013 50.000 9.70 0.00 30.29 4.44
171 172 1.652124 CGTTCGGTACTTGATCGGTTG 59.348 52.381 9.70 0.00 30.29 3.77
172 173 1.997606 GTTCGGTACTTGATCGGTTGG 59.002 52.381 0.00 0.00 30.29 3.77
173 174 1.548081 TCGGTACTTGATCGGTTGGA 58.452 50.000 0.00 0.00 30.29 3.53
174 175 2.104967 TCGGTACTTGATCGGTTGGAT 58.895 47.619 0.00 0.00 38.35 3.41
183 184 2.295253 ATCGGTTGGATCACGAAGAC 57.705 50.000 0.00 0.00 40.27 3.01
184 185 0.109458 TCGGTTGGATCACGAAGACG 60.109 55.000 0.00 0.00 45.75 4.18
199 200 4.802664 GAAGACGTTCGACTACATCAAC 57.197 45.455 0.00 0.00 0.00 3.18
200 201 3.213249 AGACGTTCGACTACATCAACC 57.787 47.619 0.00 0.00 0.00 3.77
201 202 1.909532 GACGTTCGACTACATCAACCG 59.090 52.381 0.00 0.00 0.00 4.44
202 203 0.638746 CGTTCGACTACATCAACCGC 59.361 55.000 0.00 0.00 0.00 5.68
203 204 1.705256 GTTCGACTACATCAACCGCA 58.295 50.000 0.00 0.00 0.00 5.69
204 205 2.268298 GTTCGACTACATCAACCGCAT 58.732 47.619 0.00 0.00 0.00 4.73
205 206 2.665649 TCGACTACATCAACCGCATT 57.334 45.000 0.00 0.00 0.00 3.56
206 207 2.967362 TCGACTACATCAACCGCATTT 58.033 42.857 0.00 0.00 0.00 2.32
207 208 2.927477 TCGACTACATCAACCGCATTTC 59.073 45.455 0.00 0.00 0.00 2.17
208 209 2.930040 CGACTACATCAACCGCATTTCT 59.070 45.455 0.00 0.00 0.00 2.52
209 210 3.370978 CGACTACATCAACCGCATTTCTT 59.629 43.478 0.00 0.00 0.00 2.52
210 211 4.565166 CGACTACATCAACCGCATTTCTTA 59.435 41.667 0.00 0.00 0.00 2.10
211 212 5.062934 CGACTACATCAACCGCATTTCTTAA 59.937 40.000 0.00 0.00 0.00 1.85
212 213 6.238103 CGACTACATCAACCGCATTTCTTAAT 60.238 38.462 0.00 0.00 0.00 1.40
213 214 6.785191 ACTACATCAACCGCATTTCTTAATG 58.215 36.000 0.00 0.00 43.28 1.90
225 226 5.377358 CATTTCTTAATGCTTCCGCTATCG 58.623 41.667 0.00 0.00 35.15 2.92
226 227 5.615544 CATTTCTTAATGCTTCCGCTATCGG 60.616 44.000 0.00 0.00 44.29 4.18
227 228 7.941505 CATTTCTTAATGCTTCCGCTATCGGT 61.942 42.308 4.70 0.00 43.84 4.69
228 229 9.610482 CATTTCTTAATGCTTCCGCTATCGGTC 62.610 44.444 4.70 0.00 43.84 4.79
236 237 3.867723 CGCTATCGGTCTACAAGGG 57.132 57.895 0.00 0.00 0.00 3.95
237 238 1.030457 CGCTATCGGTCTACAAGGGT 58.970 55.000 0.00 0.00 0.00 4.34
238 239 2.224606 CGCTATCGGTCTACAAGGGTA 58.775 52.381 0.00 0.00 0.00 3.69
239 240 2.031333 CGCTATCGGTCTACAAGGGTAC 60.031 54.545 0.00 0.00 0.00 3.34
240 241 2.031333 GCTATCGGTCTACAAGGGTACG 60.031 54.545 0.00 0.00 0.00 3.67
241 242 2.134789 ATCGGTCTACAAGGGTACGT 57.865 50.000 0.00 0.00 0.00 3.57
242 243 2.779755 TCGGTCTACAAGGGTACGTA 57.220 50.000 0.00 0.00 0.00 3.57
243 244 2.632377 TCGGTCTACAAGGGTACGTAG 58.368 52.381 0.00 0.00 37.12 3.51
244 245 2.236146 TCGGTCTACAAGGGTACGTAGA 59.764 50.000 0.00 4.74 41.32 2.59
248 249 4.019792 TCTACAAGGGTACGTAGACACA 57.980 45.455 0.00 0.00 39.28 3.72
249 250 3.753272 TCTACAAGGGTACGTAGACACAC 59.247 47.826 0.00 0.00 39.28 3.82
250 251 2.590821 ACAAGGGTACGTAGACACACT 58.409 47.619 0.00 0.00 31.76 3.55
251 252 2.555757 ACAAGGGTACGTAGACACACTC 59.444 50.000 0.00 0.00 29.43 3.51
252 253 2.818432 CAAGGGTACGTAGACACACTCT 59.182 50.000 0.00 0.00 29.43 3.24
253 254 2.709213 AGGGTACGTAGACACACTCTC 58.291 52.381 0.00 0.00 0.00 3.20
254 255 1.742268 GGGTACGTAGACACACTCTCC 59.258 57.143 0.00 0.00 0.00 3.71
255 256 1.742268 GGTACGTAGACACACTCTCCC 59.258 57.143 0.00 0.00 0.00 4.30
256 257 1.742268 GTACGTAGACACACTCTCCCC 59.258 57.143 0.00 0.00 0.00 4.81
257 258 0.404812 ACGTAGACACACTCTCCCCT 59.595 55.000 0.00 0.00 0.00 4.79
258 259 1.096416 CGTAGACACACTCTCCCCTC 58.904 60.000 0.00 0.00 0.00 4.30
259 260 1.340211 CGTAGACACACTCTCCCCTCT 60.340 57.143 0.00 0.00 0.00 3.69
260 261 2.371306 GTAGACACACTCTCCCCTCTC 58.629 57.143 0.00 0.00 0.00 3.20
261 262 0.322997 AGACACACTCTCCCCTCTCG 60.323 60.000 0.00 0.00 0.00 4.04
262 263 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
263 264 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
264 265 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
265 266 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
266 267 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
267 268 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
268 269 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
269 270 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
270 271 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
271 272 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
272 273 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
273 274 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
274 275 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
275 276 2.402305 CCTCTCGTTGCTATGCATCTC 58.598 52.381 0.19 0.00 38.76 2.75
276 277 2.402305 CTCTCGTTGCTATGCATCTCC 58.598 52.381 0.19 0.00 38.76 3.71
277 278 2.034878 TCTCGTTGCTATGCATCTCCT 58.965 47.619 0.19 0.00 38.76 3.69
278 279 3.222603 TCTCGTTGCTATGCATCTCCTA 58.777 45.455 0.19 0.00 38.76 2.94
279 280 3.254411 TCTCGTTGCTATGCATCTCCTAG 59.746 47.826 0.19 0.00 38.76 3.02
280 281 3.222603 TCGTTGCTATGCATCTCCTAGA 58.777 45.455 0.19 0.00 38.76 2.43
281 282 3.829026 TCGTTGCTATGCATCTCCTAGAT 59.171 43.478 0.19 0.00 38.76 1.98
282 283 5.010282 TCGTTGCTATGCATCTCCTAGATA 58.990 41.667 0.19 0.00 38.76 1.98
283 284 5.124617 TCGTTGCTATGCATCTCCTAGATAG 59.875 44.000 0.19 0.00 38.76 2.08
284 285 5.124617 CGTTGCTATGCATCTCCTAGATAGA 59.875 44.000 0.19 0.00 38.76 1.98
285 286 6.183360 CGTTGCTATGCATCTCCTAGATAGAT 60.183 42.308 0.19 0.00 38.76 1.98
286 287 6.957920 TGCTATGCATCTCCTAGATAGATC 57.042 41.667 0.19 0.00 32.12 2.75
287 288 6.671605 TGCTATGCATCTCCTAGATAGATCT 58.328 40.000 0.19 0.00 32.12 2.75
288 289 7.124721 TGCTATGCATCTCCTAGATAGATCTT 58.875 38.462 0.19 0.00 32.12 2.40
289 290 7.068470 TGCTATGCATCTCCTAGATAGATCTTG 59.932 40.741 0.19 0.00 32.12 3.02
290 291 5.657826 TGCATCTCCTAGATAGATCTTGC 57.342 43.478 0.00 0.69 38.32 4.01
291 292 4.157472 TGCATCTCCTAGATAGATCTTGCG 59.843 45.833 0.00 0.00 36.48 4.85
292 293 4.157656 GCATCTCCTAGATAGATCTTGCGT 59.842 45.833 0.00 0.00 38.32 5.24
293 294 5.639757 CATCTCCTAGATAGATCTTGCGTG 58.360 45.833 0.00 0.00 38.32 5.34
294 295 4.974399 TCTCCTAGATAGATCTTGCGTGA 58.026 43.478 0.00 0.00 38.32 4.35
295 296 5.565509 TCTCCTAGATAGATCTTGCGTGAT 58.434 41.667 0.00 0.00 38.32 3.06
296 297 5.645929 TCTCCTAGATAGATCTTGCGTGATC 59.354 44.000 0.00 9.82 42.18 2.92
297 298 4.393371 TCCTAGATAGATCTTGCGTGATCG 59.607 45.833 0.00 0.00 45.35 3.69
298 299 4.155099 CCTAGATAGATCTTGCGTGATCGT 59.845 45.833 0.00 6.35 45.35 3.73
299 300 5.351740 CCTAGATAGATCTTGCGTGATCGTA 59.648 44.000 0.00 6.70 45.35 3.43
300 301 5.289917 AGATAGATCTTGCGTGATCGTAG 57.710 43.478 0.00 0.00 45.35 3.51
301 302 4.998033 AGATAGATCTTGCGTGATCGTAGA 59.002 41.667 0.00 0.00 45.35 2.59
302 303 5.645929 AGATAGATCTTGCGTGATCGTAGAT 59.354 40.000 0.00 0.00 45.35 1.98
303 304 4.576216 AGATCTTGCGTGATCGTAGATT 57.424 40.909 11.44 0.00 45.35 2.40
304 305 4.938080 AGATCTTGCGTGATCGTAGATTT 58.062 39.130 11.44 0.00 45.35 2.17
305 306 5.352284 AGATCTTGCGTGATCGTAGATTTT 58.648 37.500 11.44 0.00 45.35 1.82
306 307 5.812642 AGATCTTGCGTGATCGTAGATTTTT 59.187 36.000 11.44 0.00 45.35 1.94
328 329 5.759506 TTTTTGAAATACTGCGTTCTCCA 57.240 34.783 0.00 0.00 0.00 3.86
329 330 5.759506 TTTTGAAATACTGCGTTCTCCAA 57.240 34.783 0.00 0.00 0.00 3.53
330 331 4.742438 TTGAAATACTGCGTTCTCCAAC 57.258 40.909 0.00 0.00 0.00 3.77
331 332 3.734463 TGAAATACTGCGTTCTCCAACA 58.266 40.909 0.00 0.00 32.14 3.33
358 359 9.373603 CAATCATGAAATGTCATACCAACAATT 57.626 29.630 0.00 0.00 46.80 2.32
371 372 8.024865 TCATACCAACAATTCTACGTATATCCG 58.975 37.037 0.00 0.00 0.00 4.18
400 401 6.398234 TCCTCATAGAAGCATCTCTAACAC 57.602 41.667 0.00 0.00 37.10 3.32
410 411 4.022849 AGCATCTCTAACACCAAAACTTGC 60.023 41.667 0.00 0.00 0.00 4.01
472 473 2.433145 ATCAGCCTGCACGTGTCG 60.433 61.111 18.38 8.29 0.00 4.35
499 500 1.681780 CCTAAAGAGGGCATTTCGGCA 60.682 52.381 0.00 0.00 43.60 5.69
500 501 1.401905 CTAAAGAGGGCATTTCGGCAC 59.598 52.381 0.00 0.00 43.60 5.01
524 525 1.007963 ACCCTCTCGATTAAGGTCCCA 59.992 52.381 7.60 0.00 0.00 4.37
560 561 7.726216 TGGTTCATAATCACTCGTCTATCATT 58.274 34.615 0.00 0.00 0.00 2.57
589 590 3.524541 CACGATGACAATCTGACATGGA 58.475 45.455 0.00 0.00 33.24 3.41
659 660 6.200286 TGACGCTTATCGATTCATAAAACTCC 59.800 38.462 1.71 0.00 41.67 3.85
690 691 6.408035 TGTATCTCTTACATTAAAACCGGCA 58.592 36.000 0.00 0.00 35.86 5.69
703 704 3.291383 CGGCACCCCTTTTTCGCA 61.291 61.111 0.00 0.00 0.00 5.10
705 706 1.671166 GGCACCCCTTTTTCGCATT 59.329 52.632 0.00 0.00 0.00 3.56
726 727 4.741781 CCAAGCGCCGAAAGCACG 62.742 66.667 2.29 0.00 44.04 5.34
733 734 1.074319 CGCCGAAAGCACGCTTACTA 61.074 55.000 4.41 0.00 44.04 1.82
770 771 1.808390 GCGTCGTCCGGCAAACTAT 60.808 57.895 0.00 0.00 36.94 2.12
771 772 1.356527 GCGTCGTCCGGCAAACTATT 61.357 55.000 0.00 0.00 36.94 1.73
772 773 1.073177 CGTCGTCCGGCAAACTATTT 58.927 50.000 0.00 0.00 0.00 1.40
783 784 5.240623 CCGGCAAACTATTTATCCTTGCATA 59.759 40.000 7.33 0.00 43.26 3.14
848 849 3.004734 AGCCAATGAACAAAGCTGTACAC 59.995 43.478 0.00 0.00 33.45 2.90
892 896 5.302823 GCAATGCTTATCATAAAACCCTCCT 59.697 40.000 0.00 0.00 34.33 3.69
943 952 5.393866 AGAAGGAAAAACATTCTGGCCTTA 58.606 37.500 3.32 0.00 45.87 2.69
971 980 1.486726 CGCTTCTCCTCCCACCTTTAT 59.513 52.381 0.00 0.00 0.00 1.40
972 981 2.698797 CGCTTCTCCTCCCACCTTTATA 59.301 50.000 0.00 0.00 0.00 0.98
1087 1101 0.875059 AGAAGAAAAAGAAGCGGCGG 59.125 50.000 9.78 0.00 0.00 6.13
1178 1195 1.669265 CTCGTGCTACACCTCATCGTA 59.331 52.381 0.00 0.00 0.00 3.43
1438 1482 2.875933 CGTTTACAAAAGAGGGTGAGCA 59.124 45.455 0.00 0.00 0.00 4.26
1439 1483 3.303791 CGTTTACAAAAGAGGGTGAGCAC 60.304 47.826 0.00 0.00 0.00 4.40
1768 1827 1.746787 GCACATGGACTCATTCATGCA 59.253 47.619 0.00 0.00 43.12 3.96
1855 1927 2.046988 TCCGTGATGCTGCACAGG 60.047 61.111 3.57 10.70 38.69 4.00
2019 2103 3.118629 GGTGTGCATTCTGTATCTCTCCA 60.119 47.826 0.00 0.00 0.00 3.86
2030 2114 0.827368 ATCTCTCCAGGCTTTCGGAC 59.173 55.000 0.00 0.00 0.00 4.79
2069 2153 1.134310 TGATGCGCTGTGGAATCTGAT 60.134 47.619 9.73 0.00 0.00 2.90
2078 2162 3.346315 TGTGGAATCTGATTTGCGATGT 58.654 40.909 4.11 0.00 0.00 3.06
2079 2163 3.758023 TGTGGAATCTGATTTGCGATGTT 59.242 39.130 4.11 0.00 0.00 2.71
2080 2164 4.218200 TGTGGAATCTGATTTGCGATGTTT 59.782 37.500 4.11 0.00 0.00 2.83
2081 2165 4.795278 GTGGAATCTGATTTGCGATGTTTC 59.205 41.667 4.11 0.00 0.00 2.78
2106 2190 1.665916 CTGCACCTGTCTGTCACCG 60.666 63.158 0.00 0.00 0.00 4.94
2107 2191 2.369257 CTGCACCTGTCTGTCACCGT 62.369 60.000 0.00 0.00 0.00 4.83
2108 2192 1.227556 GCACCTGTCTGTCACCGTT 60.228 57.895 0.00 0.00 0.00 4.44
2109 2193 1.222115 GCACCTGTCTGTCACCGTTC 61.222 60.000 0.00 0.00 0.00 3.95
2110 2194 0.939577 CACCTGTCTGTCACCGTTCG 60.940 60.000 0.00 0.00 0.00 3.95
2111 2195 1.372997 CCTGTCTGTCACCGTTCGG 60.373 63.158 9.81 9.81 0.00 4.30
2113 2197 2.338984 GTCTGTCACCGTTCGGCT 59.661 61.111 11.32 0.00 0.00 5.52
2118 2213 2.492881 TCTGTCACCGTTCGGCTATTTA 59.507 45.455 11.32 0.00 0.00 1.40
2143 2241 2.408050 AGACAGACAACGAGCACATTC 58.592 47.619 0.00 0.00 0.00 2.67
2190 2288 2.732289 GCTTCTGCCCAGGTTCAAA 58.268 52.632 0.00 0.00 0.00 2.69
2199 2297 3.244146 TGCCCAGGTTCAAATTGTTGATG 60.244 43.478 0.00 0.00 43.29 3.07
2228 2326 2.244000 CCGTATAGGCGGCCAATTG 58.756 57.895 23.09 6.55 45.47 2.32
2323 2421 4.040461 GCAGAGCATGGTTATAAGGGTAGA 59.960 45.833 0.00 0.00 0.00 2.59
2324 2422 5.454755 GCAGAGCATGGTTATAAGGGTAGAA 60.455 44.000 0.00 0.00 0.00 2.10
2325 2423 5.992217 CAGAGCATGGTTATAAGGGTAGAAC 59.008 44.000 0.00 0.00 31.81 3.01
2326 2424 5.905913 AGAGCATGGTTATAAGGGTAGAACT 59.094 40.000 0.00 0.00 32.95 3.01
2327 2425 5.930135 AGCATGGTTATAAGGGTAGAACTG 58.070 41.667 0.00 0.00 32.95 3.16
2350 2448 8.714906 ACTGTATATGTTAGGAAATTAGGCAGT 58.285 33.333 0.00 0.00 0.00 4.40
2432 2531 6.183360 ACAGATTAGGAACACGTAGCACATAT 60.183 38.462 0.00 0.00 0.00 1.78
2471 2570 2.808543 ACATGTCAAGCGAGAAAGGTTC 59.191 45.455 0.00 0.00 0.00 3.62
2490 2589 3.328535 TCAGGACATACTAGGGCATCA 57.671 47.619 0.00 0.00 0.00 3.07
2545 2644 2.808933 GTGAAACAAGATGGTCGTCCCA 60.809 50.000 0.00 0.00 42.69 4.37
2546 2645 4.658869 GTGAAACAAGATGGTCGTCCCAG 61.659 52.174 0.00 0.00 42.00 4.45
2553 2652 2.081078 TGGTCGTCCCAGGTAGAGA 58.919 57.895 0.00 0.00 38.72 3.10
2568 2667 6.223852 CAGGTAGAGAAAGTAGTCAAAGCAA 58.776 40.000 0.00 0.00 0.00 3.91
2570 2669 6.931840 AGGTAGAGAAAGTAGTCAAAGCAAAG 59.068 38.462 0.00 0.00 0.00 2.77
2575 2674 5.760743 AGAAAGTAGTCAAAGCAAAGAGACC 59.239 40.000 0.00 0.00 0.00 3.85
2615 2714 0.620556 ACTTGAGGGGACAATCGCAT 59.379 50.000 0.00 0.00 0.00 4.73
2622 2721 1.543802 GGGGACAATCGCATTGAAACA 59.456 47.619 13.53 0.00 42.83 2.83
2638 2737 3.296854 GAAACACTCCCCAAGAACCTTT 58.703 45.455 0.00 0.00 0.00 3.11
2643 2742 0.476771 TCCCCAAGAACCTTTTCGCT 59.523 50.000 0.00 0.00 36.78 4.93
2648 2747 1.461127 CAAGAACCTTTTCGCTCCTCG 59.539 52.381 0.00 0.00 36.78 4.63
2650 2749 1.070289 AGAACCTTTTCGCTCCTCGTT 59.930 47.619 0.00 0.00 39.67 3.85
2653 2752 0.517316 CCTTTTCGCTCCTCGTTTGG 59.483 55.000 0.00 0.00 39.67 3.28
2657 2756 2.357517 CGCTCCTCGTTTGGTGCT 60.358 61.111 13.48 0.00 42.49 4.40
2666 2765 0.307760 CGTTTGGTGCTGGTTCTCAC 59.692 55.000 0.00 0.00 0.00 3.51
2692 2791 0.037326 CGGCTTTAGAGGTCTGCACA 60.037 55.000 0.00 0.00 0.00 4.57
2702 2801 2.359850 TCTGCACACCCGAATGGC 60.360 61.111 0.00 0.00 37.83 4.40
2711 2810 2.048023 CCCGAATGGCTGTGCATGT 61.048 57.895 0.00 0.00 0.00 3.21
2717 2816 1.091771 ATGGCTGTGCATGTAGTCGC 61.092 55.000 0.00 0.00 0.00 5.19
2719 2818 2.802667 GCTGTGCATGTAGTCGCCG 61.803 63.158 0.00 0.00 0.00 6.46
2721 2820 2.183300 GTGCATGTAGTCGCCGGA 59.817 61.111 5.05 0.00 0.00 5.14
2726 2825 0.930310 CATGTAGTCGCCGGAATGTG 59.070 55.000 5.05 0.00 0.00 3.21
2728 2827 1.217244 GTAGTCGCCGGAATGTGGT 59.783 57.895 5.05 0.00 0.00 4.16
2732 2831 3.124921 CGCCGGAATGTGGTCACC 61.125 66.667 5.05 0.00 0.00 4.02
2752 2851 1.746220 CGGGGAAACAACTCAACACAA 59.254 47.619 0.00 0.00 0.00 3.33
2773 2882 3.510719 ACAGATGTGTGTGTTTTGTTGC 58.489 40.909 0.00 0.00 34.75 4.17
2796 2905 1.529713 GCAAGTTTTCCCGGGTGGA 60.530 57.895 22.86 4.98 43.18 4.02
2838 2947 1.202639 CCCCCAAAGTTTTGCCACTTC 60.203 52.381 0.00 0.00 35.87 3.01
2840 2949 2.170397 CCCCAAAGTTTTGCCACTTCTT 59.830 45.455 0.00 0.00 35.87 2.52
2844 2953 0.385390 AGTTTTGCCACTTCTTGCCG 59.615 50.000 0.00 0.00 0.00 5.69
2880 2989 2.158813 TGGGCTATGCACCTTAACTAGC 60.159 50.000 4.93 4.93 35.24 3.42
2888 2997 2.488153 GCACCTTAACTAGCAAGGGTTG 59.512 50.000 21.76 15.04 45.81 3.77
2889 2998 3.751518 CACCTTAACTAGCAAGGGTTGT 58.248 45.455 21.76 4.42 45.81 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.599285 TTACCGGCACAGGGCTTCG 62.599 63.158 0.00 0.00 44.01 3.79
15 16 2.038837 GTTACCGGCACAGGGCTTC 61.039 63.158 0.00 0.00 44.01 3.86
16 17 2.033602 GTTACCGGCACAGGGCTT 59.966 61.111 0.00 0.00 44.01 4.35
17 18 2.465055 GAAGTTACCGGCACAGGGCT 62.465 60.000 0.00 0.00 44.01 5.19
18 19 2.033602 AAGTTACCGGCACAGGGC 59.966 61.111 0.00 0.00 43.74 5.19
19 20 0.035439 ATGAAGTTACCGGCACAGGG 60.035 55.000 0.00 0.00 35.02 4.45
20 21 1.066143 AGATGAAGTTACCGGCACAGG 60.066 52.381 0.00 0.00 37.30 4.00
21 22 2.386661 AGATGAAGTTACCGGCACAG 57.613 50.000 0.00 0.00 0.00 3.66
22 23 2.037902 TGAAGATGAAGTTACCGGCACA 59.962 45.455 0.00 0.00 0.00 4.57
23 24 2.415512 GTGAAGATGAAGTTACCGGCAC 59.584 50.000 0.00 0.00 0.00 5.01
24 25 2.614481 GGTGAAGATGAAGTTACCGGCA 60.614 50.000 0.00 0.00 0.00 5.69
25 26 2.007608 GGTGAAGATGAAGTTACCGGC 58.992 52.381 0.00 0.00 0.00 6.13
26 27 2.268298 CGGTGAAGATGAAGTTACCGG 58.732 52.381 0.00 0.00 45.19 5.28
28 29 3.921677 TGACGGTGAAGATGAAGTTACC 58.078 45.455 0.00 0.00 0.00 2.85
29 30 4.748102 TGTTGACGGTGAAGATGAAGTTAC 59.252 41.667 0.00 0.00 0.00 2.50
30 31 4.748102 GTGTTGACGGTGAAGATGAAGTTA 59.252 41.667 0.00 0.00 0.00 2.24
31 32 3.560068 GTGTTGACGGTGAAGATGAAGTT 59.440 43.478 0.00 0.00 0.00 2.66
32 33 3.131396 GTGTTGACGGTGAAGATGAAGT 58.869 45.455 0.00 0.00 0.00 3.01
33 34 2.155732 CGTGTTGACGGTGAAGATGAAG 59.844 50.000 0.00 0.00 42.18 3.02
34 35 2.131972 CGTGTTGACGGTGAAGATGAA 58.868 47.619 0.00 0.00 42.18 2.57
35 36 1.778334 CGTGTTGACGGTGAAGATGA 58.222 50.000 0.00 0.00 42.18 2.92
36 37 0.163788 GCGTGTTGACGGTGAAGATG 59.836 55.000 0.00 0.00 46.20 2.90
37 38 0.949105 GGCGTGTTGACGGTGAAGAT 60.949 55.000 0.00 0.00 46.20 2.40
38 39 1.593209 GGCGTGTTGACGGTGAAGA 60.593 57.895 0.00 0.00 46.20 2.87
39 40 2.935955 GGCGTGTTGACGGTGAAG 59.064 61.111 0.00 0.00 46.20 3.02
60 61 2.029290 TGAGGGAGAGTTTCGTTAGCAC 60.029 50.000 0.00 0.00 0.00 4.40
61 62 2.231478 CTGAGGGAGAGTTTCGTTAGCA 59.769 50.000 0.00 0.00 0.00 3.49
62 63 2.882324 CTGAGGGAGAGTTTCGTTAGC 58.118 52.381 0.00 0.00 0.00 3.09
63 64 2.417515 GGCTGAGGGAGAGTTTCGTTAG 60.418 54.545 0.00 0.00 0.00 2.34
64 65 1.549170 GGCTGAGGGAGAGTTTCGTTA 59.451 52.381 0.00 0.00 0.00 3.18
65 66 0.321996 GGCTGAGGGAGAGTTTCGTT 59.678 55.000 0.00 0.00 0.00 3.85
66 67 0.543174 AGGCTGAGGGAGAGTTTCGT 60.543 55.000 0.00 0.00 0.00 3.85
67 68 0.174617 GAGGCTGAGGGAGAGTTTCG 59.825 60.000 0.00 0.00 0.00 3.46
68 69 1.270907 TGAGGCTGAGGGAGAGTTTC 58.729 55.000 0.00 0.00 0.00 2.78
69 70 1.349357 GTTGAGGCTGAGGGAGAGTTT 59.651 52.381 0.00 0.00 0.00 2.66
70 71 0.980423 GTTGAGGCTGAGGGAGAGTT 59.020 55.000 0.00 0.00 0.00 3.01
71 72 0.116143 AGTTGAGGCTGAGGGAGAGT 59.884 55.000 0.00 0.00 0.00 3.24
72 73 0.536260 CAGTTGAGGCTGAGGGAGAG 59.464 60.000 0.00 0.00 38.70 3.20
73 74 0.906756 CCAGTTGAGGCTGAGGGAGA 60.907 60.000 0.00 0.00 38.70 3.71
74 75 0.906756 TCCAGTTGAGGCTGAGGGAG 60.907 60.000 0.00 0.00 38.70 4.30
75 76 0.252881 ATCCAGTTGAGGCTGAGGGA 60.253 55.000 0.00 0.00 38.70 4.20
76 77 0.179936 GATCCAGTTGAGGCTGAGGG 59.820 60.000 0.00 0.00 38.70 4.30
77 78 0.907486 TGATCCAGTTGAGGCTGAGG 59.093 55.000 0.00 0.00 38.70 3.86
78 79 2.235650 TCTTGATCCAGTTGAGGCTGAG 59.764 50.000 0.00 0.00 38.70 3.35
79 80 2.235650 CTCTTGATCCAGTTGAGGCTGA 59.764 50.000 0.00 0.00 38.70 4.26
80 81 2.027377 ACTCTTGATCCAGTTGAGGCTG 60.027 50.000 0.00 0.00 36.31 4.85
81 82 2.264455 ACTCTTGATCCAGTTGAGGCT 58.736 47.619 0.00 0.00 0.00 4.58
82 83 2.777832 ACTCTTGATCCAGTTGAGGC 57.222 50.000 0.00 0.00 0.00 4.70
83 84 3.444034 TCGTACTCTTGATCCAGTTGAGG 59.556 47.826 0.00 0.00 0.00 3.86
84 85 4.439426 CCTCGTACTCTTGATCCAGTTGAG 60.439 50.000 0.00 1.88 0.00 3.02
85 86 3.444034 CCTCGTACTCTTGATCCAGTTGA 59.556 47.826 0.00 0.00 0.00 3.18
86 87 3.429547 CCCTCGTACTCTTGATCCAGTTG 60.430 52.174 0.00 0.00 0.00 3.16
87 88 2.761208 CCCTCGTACTCTTGATCCAGTT 59.239 50.000 0.00 0.00 0.00 3.16
88 89 2.025226 TCCCTCGTACTCTTGATCCAGT 60.025 50.000 0.00 0.00 0.00 4.00
89 90 2.359531 GTCCCTCGTACTCTTGATCCAG 59.640 54.545 0.00 0.00 0.00 3.86
90 91 2.376109 GTCCCTCGTACTCTTGATCCA 58.624 52.381 0.00 0.00 0.00 3.41
91 92 1.334243 CGTCCCTCGTACTCTTGATCC 59.666 57.143 0.00 0.00 34.52 3.36
92 93 2.759538 CGTCCCTCGTACTCTTGATC 57.240 55.000 0.00 0.00 34.52 2.92
111 112 1.269166 CATACGTTCAGCTCGGTGAC 58.731 55.000 0.00 0.00 0.00 3.67
112 113 0.457853 GCATACGTTCAGCTCGGTGA 60.458 55.000 0.00 0.00 0.00 4.02
113 114 0.735978 TGCATACGTTCAGCTCGGTG 60.736 55.000 0.00 0.00 0.00 4.94
114 115 0.458543 CTGCATACGTTCAGCTCGGT 60.459 55.000 0.00 0.00 0.00 4.69
115 116 0.179137 TCTGCATACGTTCAGCTCGG 60.179 55.000 0.00 0.00 0.00 4.63
116 117 1.783711 GATCTGCATACGTTCAGCTCG 59.216 52.381 0.00 0.00 0.00 5.03
117 118 2.537625 GTGATCTGCATACGTTCAGCTC 59.462 50.000 0.00 1.27 0.00 4.09
118 119 2.544685 GTGATCTGCATACGTTCAGCT 58.455 47.619 0.00 0.00 0.00 4.24
119 120 1.256376 CGTGATCTGCATACGTTCAGC 59.744 52.381 0.00 0.00 33.48 4.26
120 121 1.854743 CCGTGATCTGCATACGTTCAG 59.145 52.381 0.00 0.00 36.17 3.02
121 122 1.474879 TCCGTGATCTGCATACGTTCA 59.525 47.619 0.00 0.00 36.17 3.18
122 123 2.120232 CTCCGTGATCTGCATACGTTC 58.880 52.381 0.00 0.00 36.17 3.95
123 124 1.202417 CCTCCGTGATCTGCATACGTT 60.202 52.381 0.00 0.00 36.17 3.99
124 125 0.385751 CCTCCGTGATCTGCATACGT 59.614 55.000 0.00 0.00 36.17 3.57
125 126 0.385751 ACCTCCGTGATCTGCATACG 59.614 55.000 0.00 0.00 37.55 3.06
126 127 1.858091 CACCTCCGTGATCTGCATAC 58.142 55.000 0.00 0.00 43.14 2.39
127 128 0.104855 GCACCTCCGTGATCTGCATA 59.895 55.000 0.00 0.00 43.14 3.14
128 129 1.153289 GCACCTCCGTGATCTGCAT 60.153 57.895 0.00 0.00 43.14 3.96
129 130 2.265739 GCACCTCCGTGATCTGCA 59.734 61.111 0.00 0.00 43.14 4.41
130 131 2.512515 GGCACCTCCGTGATCTGC 60.513 66.667 0.00 0.00 43.14 4.26
147 148 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
148 149 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
149 150 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
150 151 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
151 152 1.652124 CAACCGATCAAGTACCGAACG 59.348 52.381 5.81 5.81 0.00 3.95
152 153 1.997606 CCAACCGATCAAGTACCGAAC 59.002 52.381 0.00 0.00 0.00 3.95
153 154 1.894466 TCCAACCGATCAAGTACCGAA 59.106 47.619 0.00 0.00 0.00 4.30
154 155 1.548081 TCCAACCGATCAAGTACCGA 58.452 50.000 0.00 0.00 0.00 4.69
155 156 2.470821 GATCCAACCGATCAAGTACCG 58.529 52.381 0.00 0.00 45.92 4.02
163 164 2.194271 GTCTTCGTGATCCAACCGATC 58.806 52.381 0.00 0.00 46.70 3.69
164 165 1.469251 CGTCTTCGTGATCCAACCGAT 60.469 52.381 0.00 0.00 0.00 4.18
165 166 0.109458 CGTCTTCGTGATCCAACCGA 60.109 55.000 0.00 0.00 0.00 4.69
166 167 2.359792 CGTCTTCGTGATCCAACCG 58.640 57.895 0.00 0.00 0.00 4.44
178 179 3.607209 GGTTGATGTAGTCGAACGTCTTC 59.393 47.826 10.09 4.37 36.53 2.87
179 180 3.572584 GGTTGATGTAGTCGAACGTCTT 58.427 45.455 10.09 0.00 36.53 3.01
180 181 2.413765 CGGTTGATGTAGTCGAACGTCT 60.414 50.000 10.09 0.00 44.71 4.18
181 182 1.909532 CGGTTGATGTAGTCGAACGTC 59.090 52.381 3.01 3.01 44.71 4.34
182 183 1.973138 CGGTTGATGTAGTCGAACGT 58.027 50.000 0.00 0.00 44.71 3.99
184 185 1.705256 TGCGGTTGATGTAGTCGAAC 58.295 50.000 0.00 0.00 0.00 3.95
185 186 2.665649 ATGCGGTTGATGTAGTCGAA 57.334 45.000 0.00 0.00 0.00 3.71
186 187 2.665649 AATGCGGTTGATGTAGTCGA 57.334 45.000 0.00 0.00 0.00 4.20
187 188 2.930040 AGAAATGCGGTTGATGTAGTCG 59.070 45.455 0.00 0.00 0.00 4.18
188 189 4.946784 AAGAAATGCGGTTGATGTAGTC 57.053 40.909 0.00 0.00 0.00 2.59
189 190 6.785191 CATTAAGAAATGCGGTTGATGTAGT 58.215 36.000 0.00 0.00 36.35 2.73
218 219 1.030457 ACCCTTGTAGACCGATAGCG 58.970 55.000 0.00 0.00 37.24 4.26
219 220 2.031333 CGTACCCTTGTAGACCGATAGC 60.031 54.545 0.00 0.00 0.00 2.97
220 221 3.209410 ACGTACCCTTGTAGACCGATAG 58.791 50.000 0.00 0.00 0.00 2.08
221 222 3.281727 ACGTACCCTTGTAGACCGATA 57.718 47.619 0.00 0.00 0.00 2.92
222 223 2.134789 ACGTACCCTTGTAGACCGAT 57.865 50.000 0.00 0.00 0.00 4.18
223 224 2.236146 TCTACGTACCCTTGTAGACCGA 59.764 50.000 4.74 0.00 41.47 4.69
224 225 2.632377 TCTACGTACCCTTGTAGACCG 58.368 52.381 4.74 0.00 41.47 4.79
227 228 3.753272 GTGTGTCTACGTACCCTTGTAGA 59.247 47.826 4.74 4.74 43.47 2.59
228 229 3.755378 AGTGTGTCTACGTACCCTTGTAG 59.245 47.826 0.00 0.62 39.50 2.74
229 230 3.753272 GAGTGTGTCTACGTACCCTTGTA 59.247 47.826 0.00 0.00 0.00 2.41
230 231 2.555757 GAGTGTGTCTACGTACCCTTGT 59.444 50.000 0.00 0.00 0.00 3.16
231 232 2.818432 AGAGTGTGTCTACGTACCCTTG 59.182 50.000 0.00 0.00 31.71 3.61
232 233 3.080319 GAGAGTGTGTCTACGTACCCTT 58.920 50.000 0.00 0.00 34.71 3.95
233 234 2.617532 GGAGAGTGTGTCTACGTACCCT 60.618 54.545 0.00 0.00 34.71 4.34
234 235 1.742268 GGAGAGTGTGTCTACGTACCC 59.258 57.143 0.00 0.00 34.71 3.69
235 236 1.742268 GGGAGAGTGTGTCTACGTACC 59.258 57.143 0.00 0.00 36.91 3.34
236 237 1.742268 GGGGAGAGTGTGTCTACGTAC 59.258 57.143 0.00 0.00 36.91 3.67
237 238 1.632409 AGGGGAGAGTGTGTCTACGTA 59.368 52.381 0.00 0.00 36.91 3.57
238 239 0.404812 AGGGGAGAGTGTGTCTACGT 59.595 55.000 0.00 0.00 36.91 3.57
239 240 1.096416 GAGGGGAGAGTGTGTCTACG 58.904 60.000 0.00 0.00 36.91 3.51
240 241 2.371306 GAGAGGGGAGAGTGTGTCTAC 58.629 57.143 0.00 0.00 34.71 2.59
241 242 1.065345 CGAGAGGGGAGAGTGTGTCTA 60.065 57.143 0.00 0.00 34.71 2.59
242 243 0.322997 CGAGAGGGGAGAGTGTGTCT 60.323 60.000 0.00 0.00 38.71 3.41
243 244 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
244 245 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
245 246 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
246 247 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
247 248 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
248 249 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
249 250 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
250 251 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
251 252 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
252 253 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
253 254 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
254 255 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
255 256 2.402305 GAGATGCATAGCAACGAGAGG 58.598 52.381 0.00 0.00 43.62 3.69
256 257 2.035704 AGGAGATGCATAGCAACGAGAG 59.964 50.000 0.00 0.00 43.62 3.20
257 258 2.034878 AGGAGATGCATAGCAACGAGA 58.965 47.619 0.00 0.00 43.62 4.04
258 259 2.522836 AGGAGATGCATAGCAACGAG 57.477 50.000 0.00 0.00 43.62 4.18
259 260 3.222603 TCTAGGAGATGCATAGCAACGA 58.777 45.455 0.00 0.00 43.62 3.85
260 261 3.650070 TCTAGGAGATGCATAGCAACG 57.350 47.619 0.00 0.00 43.62 4.10
261 262 6.522625 TCTATCTAGGAGATGCATAGCAAC 57.477 41.667 0.00 0.00 43.62 4.17
262 263 7.124721 AGATCTATCTAGGAGATGCATAGCAA 58.875 38.462 0.00 0.00 37.47 3.91
263 264 6.671605 AGATCTATCTAGGAGATGCATAGCA 58.328 40.000 0.00 0.00 38.03 3.49
264 265 7.428020 CAAGATCTATCTAGGAGATGCATAGC 58.572 42.308 0.00 0.00 35.37 2.97
265 266 7.428020 GCAAGATCTATCTAGGAGATGCATAG 58.572 42.308 0.00 0.00 35.37 2.23
266 267 6.039159 CGCAAGATCTATCTAGGAGATGCATA 59.961 42.308 0.00 0.00 35.65 3.14
267 268 5.163530 CGCAAGATCTATCTAGGAGATGCAT 60.164 44.000 0.00 0.00 35.65 3.96
268 269 4.157472 CGCAAGATCTATCTAGGAGATGCA 59.843 45.833 11.48 0.00 35.65 3.96
269 270 4.157656 ACGCAAGATCTATCTAGGAGATGC 59.842 45.833 11.48 9.81 36.70 3.91
270 271 5.414144 TCACGCAAGATCTATCTAGGAGATG 59.586 44.000 11.48 2.82 36.70 2.90
271 272 5.565509 TCACGCAAGATCTATCTAGGAGAT 58.434 41.667 0.00 7.55 38.77 2.75
272 273 4.974399 TCACGCAAGATCTATCTAGGAGA 58.026 43.478 0.00 0.00 43.62 3.71
273 274 5.447144 CGATCACGCAAGATCTATCTAGGAG 60.447 48.000 12.06 0.00 41.74 3.69
274 275 4.393371 CGATCACGCAAGATCTATCTAGGA 59.607 45.833 12.06 0.00 41.74 2.94
275 276 4.155099 ACGATCACGCAAGATCTATCTAGG 59.845 45.833 12.06 0.32 41.74 3.02
276 277 5.289917 ACGATCACGCAAGATCTATCTAG 57.710 43.478 12.06 0.00 41.74 2.43
277 278 6.164176 TCTACGATCACGCAAGATCTATCTA 58.836 40.000 12.06 0.00 41.74 1.98
278 279 4.998033 TCTACGATCACGCAAGATCTATCT 59.002 41.667 12.06 0.00 41.74 1.98
279 280 5.284428 TCTACGATCACGCAAGATCTATC 57.716 43.478 12.06 0.00 41.74 2.08
280 281 5.888691 ATCTACGATCACGCAAGATCTAT 57.111 39.130 12.06 4.73 41.74 1.98
281 282 5.690997 AATCTACGATCACGCAAGATCTA 57.309 39.130 12.06 4.90 41.39 1.98
282 283 4.576216 AATCTACGATCACGCAAGATCT 57.424 40.909 12.06 0.00 41.39 2.75
283 284 5.643339 AAAATCTACGATCACGCAAGATC 57.357 39.130 5.52 5.52 41.39 2.75
306 307 5.759506 TGGAGAACGCAGTATTTCAAAAA 57.240 34.783 0.00 0.00 45.00 1.94
307 308 5.066634 TGTTGGAGAACGCAGTATTTCAAAA 59.933 36.000 0.00 0.00 45.00 2.44
308 309 4.576873 TGTTGGAGAACGCAGTATTTCAAA 59.423 37.500 0.00 0.00 45.00 2.69
309 310 4.024387 GTGTTGGAGAACGCAGTATTTCAA 60.024 41.667 0.00 0.00 45.00 2.69
310 311 3.496884 GTGTTGGAGAACGCAGTATTTCA 59.503 43.478 0.00 0.00 45.00 2.69
311 312 3.496884 TGTGTTGGAGAACGCAGTATTTC 59.503 43.478 0.00 0.00 45.53 2.17
312 313 3.472652 TGTGTTGGAGAACGCAGTATTT 58.527 40.909 0.00 0.00 45.53 1.40
313 314 3.120321 TGTGTTGGAGAACGCAGTATT 57.880 42.857 0.00 0.00 45.53 1.89
314 315 2.831685 TGTGTTGGAGAACGCAGTAT 57.168 45.000 0.00 0.00 45.53 2.12
319 320 2.483877 TCATGATTGTGTTGGAGAACGC 59.516 45.455 0.00 0.00 42.06 4.84
320 321 4.747540 TTCATGATTGTGTTGGAGAACG 57.252 40.909 0.00 0.00 34.49 3.95
321 322 6.449698 ACATTTCATGATTGTGTTGGAGAAC 58.550 36.000 10.17 0.00 0.00 3.01
322 323 6.264970 TGACATTTCATGATTGTGTTGGAGAA 59.735 34.615 14.56 0.00 0.00 2.87
323 324 5.769162 TGACATTTCATGATTGTGTTGGAGA 59.231 36.000 14.56 0.00 0.00 3.71
324 325 6.016213 TGACATTTCATGATTGTGTTGGAG 57.984 37.500 14.56 0.00 0.00 3.86
325 326 6.593268 ATGACATTTCATGATTGTGTTGGA 57.407 33.333 14.56 2.57 41.23 3.53
326 327 6.753279 GGTATGACATTTCATGATTGTGTTGG 59.247 38.462 14.56 0.00 42.79 3.77
327 328 7.314393 TGGTATGACATTTCATGATTGTGTTG 58.686 34.615 14.56 2.19 42.79 3.33
328 329 7.465353 TGGTATGACATTTCATGATTGTGTT 57.535 32.000 14.56 6.30 42.79 3.32
329 330 7.039853 TGTTGGTATGACATTTCATGATTGTGT 60.040 33.333 14.56 11.05 42.79 3.72
330 331 7.314393 TGTTGGTATGACATTTCATGATTGTG 58.686 34.615 14.56 8.31 42.79 3.33
331 332 7.465353 TGTTGGTATGACATTTCATGATTGT 57.535 32.000 10.64 10.64 42.79 2.71
358 359 5.242171 TGAGGATTTTGCGGATATACGTAGA 59.758 40.000 9.53 0.00 35.98 2.59
371 372 5.764192 AGAGATGCTTCTATGAGGATTTTGC 59.236 40.000 1.44 0.00 30.30 3.68
400 401 0.469494 AAAGGGGCTGCAAGTTTTGG 59.531 50.000 0.50 0.00 35.30 3.28
410 411 2.132089 TACGGGTCCAAAAGGGGCTG 62.132 60.000 0.00 0.00 42.62 4.85
499 500 2.830321 ACCTTAATCGAGAGGGTTTCGT 59.170 45.455 14.53 0.00 39.05 3.85
500 501 3.445857 GACCTTAATCGAGAGGGTTTCG 58.554 50.000 14.53 0.00 37.36 3.46
690 691 1.873270 GCCGAATGCGAAAAAGGGGT 61.873 55.000 0.00 0.00 40.82 4.95
726 727 3.068307 ACGTGGATGGTGATCTAGTAAGC 59.932 47.826 0.00 0.00 0.00 3.09
733 734 3.840831 CACACGTGGATGGTGATCT 57.159 52.632 21.57 0.00 38.73 2.75
753 754 1.073177 AAATAGTTTGCCGGACGACG 58.927 50.000 5.05 0.00 43.80 5.12
848 849 2.681848 GCAGTTTCCATCTCCATGACTG 59.318 50.000 0.00 0.00 36.28 3.51
943 952 1.536943 GGAGGAGAAGCGGACAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
1087 1101 3.125376 ATCCCCGCCTCCTGCATTC 62.125 63.158 0.00 0.00 41.33 2.67
1178 1195 1.139058 GAGGTGACGAATATGGTGGCT 59.861 52.381 0.00 0.00 0.00 4.75
1438 1482 3.841379 ATGTGCGTGTGCTCGTCGT 62.841 57.895 0.00 0.00 43.34 4.34
1439 1483 3.105782 ATGTGCGTGTGCTCGTCG 61.106 61.111 0.00 0.00 43.34 5.12
1574 1630 4.821589 CGCGCCTCCACCTCCTTC 62.822 72.222 0.00 0.00 0.00 3.46
1712 1771 3.573967 GGTGGTGGAACTTGTTGATGAAT 59.426 43.478 0.00 0.00 36.74 2.57
1768 1827 0.907230 GTGGAGCCTCTTCTGGGAGT 60.907 60.000 0.00 0.00 0.00 3.85
2019 2103 3.236003 GACACGGGTCCGAAAGCCT 62.236 63.158 16.90 0.00 43.82 4.58
2030 2114 4.636435 ACGGCCAAAGGACACGGG 62.636 66.667 2.24 0.00 0.00 5.28
2069 2153 4.202000 TGCAGAAGAAAGAAACATCGCAAA 60.202 37.500 0.00 0.00 0.00 3.68
2078 2162 3.879295 CAGACAGGTGCAGAAGAAAGAAA 59.121 43.478 0.00 0.00 0.00 2.52
2079 2163 3.118261 ACAGACAGGTGCAGAAGAAAGAA 60.118 43.478 0.00 0.00 0.00 2.52
2080 2164 2.435805 ACAGACAGGTGCAGAAGAAAGA 59.564 45.455 0.00 0.00 0.00 2.52
2081 2165 2.805099 GACAGACAGGTGCAGAAGAAAG 59.195 50.000 0.00 0.00 0.00 2.62
2106 2190 6.810182 TGTCTGTCTAAACTAAATAGCCGAAC 59.190 38.462 0.00 0.00 0.00 3.95
2107 2191 6.927416 TGTCTGTCTAAACTAAATAGCCGAA 58.073 36.000 0.00 0.00 0.00 4.30
2108 2192 6.519679 TGTCTGTCTAAACTAAATAGCCGA 57.480 37.500 0.00 0.00 0.00 5.54
2109 2193 6.237490 CGTTGTCTGTCTAAACTAAATAGCCG 60.237 42.308 0.00 0.00 0.00 5.52
2110 2194 6.810182 TCGTTGTCTGTCTAAACTAAATAGCC 59.190 38.462 0.00 0.00 0.00 3.93
2111 2195 7.462988 GCTCGTTGTCTGTCTAAACTAAATAGC 60.463 40.741 0.00 0.00 0.00 2.97
2113 2197 7.327761 GTGCTCGTTGTCTGTCTAAACTAAATA 59.672 37.037 0.00 0.00 0.00 1.40
2118 2213 3.181479 TGTGCTCGTTGTCTGTCTAAACT 60.181 43.478 0.00 0.00 0.00 2.66
2143 2241 0.108329 ATACAAACCCGCACGAGAGG 60.108 55.000 0.00 0.00 0.00 3.69
2190 2288 3.009723 GGATGTGGACGTCATCAACAAT 58.990 45.455 18.91 6.30 44.79 2.71
2199 2297 1.335689 GCCTATACGGATGTGGACGTC 60.336 57.143 7.13 7.13 43.02 4.34
2323 2421 9.561069 CTGCCTAATTTCCTAACATATACAGTT 57.439 33.333 0.00 0.00 0.00 3.16
2324 2422 8.714906 ACTGCCTAATTTCCTAACATATACAGT 58.285 33.333 0.00 0.00 0.00 3.55
2325 2423 9.561069 AACTGCCTAATTTCCTAACATATACAG 57.439 33.333 0.00 0.00 0.00 2.74
2326 2424 9.914834 AAACTGCCTAATTTCCTAACATATACA 57.085 29.630 0.00 0.00 0.00 2.29
2392 2491 4.460948 AATCTGTTGGATGTGATTTGCC 57.539 40.909 0.00 0.00 34.45 4.52
2432 2531 1.202794 TGTGTCTTTGAGCCATCTGCA 60.203 47.619 0.00 0.00 44.83 4.41
2436 2535 3.076621 TGACATGTGTCTTTGAGCCATC 58.923 45.455 1.15 0.00 44.99 3.51
2441 2540 2.802247 TCGCTTGACATGTGTCTTTGAG 59.198 45.455 1.15 7.91 44.99 3.02
2459 2558 2.100605 ATGTCCTGAACCTTTCTCGC 57.899 50.000 0.00 0.00 0.00 5.03
2471 2570 3.006323 GTCTGATGCCCTAGTATGTCCTG 59.994 52.174 0.00 0.00 0.00 3.86
2490 2589 1.867233 GATGTTGTTGCGTCAGTGTCT 59.133 47.619 0.00 0.00 0.00 3.41
2545 2644 6.420913 TTGCTTTGACTACTTTCTCTACCT 57.579 37.500 0.00 0.00 0.00 3.08
2546 2645 6.929606 TCTTTGCTTTGACTACTTTCTCTACC 59.070 38.462 0.00 0.00 0.00 3.18
2553 2652 4.511826 CGGTCTCTTTGCTTTGACTACTTT 59.488 41.667 0.00 0.00 0.00 2.66
2575 2674 4.032672 AGTTCGACTACATTCTAGACGACG 59.967 45.833 0.00 0.00 40.21 5.12
2585 2684 3.056035 GTCCCCTCAAGTTCGACTACATT 60.056 47.826 0.00 0.00 0.00 2.71
2615 2714 2.243736 AGGTTCTTGGGGAGTGTTTCAA 59.756 45.455 0.00 0.00 0.00 2.69
2622 2721 1.818131 GCGAAAAGGTTCTTGGGGAGT 60.818 52.381 0.00 0.00 0.00 3.85
2638 2737 1.959226 GCACCAAACGAGGAGCGAA 60.959 57.895 0.00 0.00 44.57 4.70
2643 2742 0.534203 GAACCAGCACCAAACGAGGA 60.534 55.000 0.00 0.00 0.00 3.71
2648 2747 0.307760 CGTGAGAACCAGCACCAAAC 59.692 55.000 0.00 0.00 0.00 2.93
2650 2749 1.227823 CCGTGAGAACCAGCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
2653 2752 1.668151 GTCCCGTGAGAACCAGCAC 60.668 63.158 0.00 0.00 0.00 4.40
2657 2756 4.351938 CGCGTCCCGTGAGAACCA 62.352 66.667 0.00 0.00 39.94 3.67
2666 2765 2.582498 CTCTAAAGCCGCGTCCCG 60.582 66.667 4.92 0.00 0.00 5.14
2679 2778 0.541063 TTCGGGTGTGCAGACCTCTA 60.541 55.000 30.02 14.48 36.14 2.43
2692 2791 2.048023 CATGCACAGCCATTCGGGT 61.048 57.895 0.00 0.00 46.65 5.28
2702 2801 2.167219 CCGGCGACTACATGCACAG 61.167 63.158 9.30 0.00 0.00 3.66
2711 2810 1.252215 TGACCACATTCCGGCGACTA 61.252 55.000 9.30 0.00 0.00 2.59
2719 2818 2.045340 CCCCGGTGACCACATTCC 60.045 66.667 1.11 0.00 0.00 3.01
2721 2820 0.538746 GTTTCCCCGGTGACCACATT 60.539 55.000 1.11 0.00 0.00 2.71
2726 2825 0.887836 GAGTTGTTTCCCCGGTGACC 60.888 60.000 0.00 0.00 0.00 4.02
2728 2827 0.547075 TTGAGTTGTTTCCCCGGTGA 59.453 50.000 0.00 0.00 0.00 4.02
2732 2831 1.384525 TGTGTTGAGTTGTTTCCCCG 58.615 50.000 0.00 0.00 0.00 5.73
2752 2851 3.056962 TGCAACAAAACACACACATCTGT 60.057 39.130 0.00 0.00 0.00 3.41
2773 2882 1.165270 CCCGGGAAAACTTGCTAGTG 58.835 55.000 18.48 0.00 34.01 2.74
2819 2928 1.762370 AGAAGTGGCAAAACTTTGGGG 59.238 47.619 4.45 0.00 40.48 4.96
2820 2929 3.197265 CAAGAAGTGGCAAAACTTTGGG 58.803 45.455 4.45 0.00 40.48 4.12
2821 2930 2.609002 GCAAGAAGTGGCAAAACTTTGG 59.391 45.455 4.45 0.00 40.48 3.28
2822 2931 3.931285 GCAAGAAGTGGCAAAACTTTG 57.069 42.857 0.00 0.00 40.48 2.77
2855 2964 3.973973 AGTTAAGGTGCATAGCCCATCTA 59.026 43.478 0.00 0.00 0.00 1.98
2869 2978 5.311265 GTTACAACCCTTGCTAGTTAAGGT 58.689 41.667 19.88 8.42 42.52 3.50
2888 2997 3.919834 TGGAGGGTCCATAGTAGGTTAC 58.080 50.000 0.00 0.00 42.67 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.