Multiple sequence alignment - TraesCS7A01G361000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G361000 chr7A 100.000 4457 0 0 1 4457 534442805 534447261 0.000000e+00 8231.0
1 TraesCS7A01G361000 chr7A 88.040 602 72 0 2858 3459 79780814 79781415 0.000000e+00 713.0
2 TraesCS7A01G361000 chr7A 90.161 498 47 2 2963 3459 79813204 79813700 0.000000e+00 647.0
3 TraesCS7A01G361000 chr7A 91.009 456 38 2 1542 1997 79776736 79777188 2.950000e-171 612.0
4 TraesCS7A01G361000 chr7A 88.107 412 40 4 1591 2001 79811852 79812255 8.670000e-132 481.0
5 TraesCS7A01G361000 chr7A 79.798 495 76 13 1345 1833 611560715 611560239 5.520000e-89 339.0
6 TraesCS7A01G361000 chr7A 79.140 465 69 15 1345 1795 611844827 611845277 3.370000e-76 296.0
7 TraesCS7A01G361000 chr7A 85.625 160 23 0 2882 3041 611551091 611550932 7.670000e-38 169.0
8 TraesCS7A01G361000 chr7A 86.525 141 12 5 4019 4152 79806559 79806699 9.990000e-32 148.0
9 TraesCS7A01G361000 chr7A 92.208 77 4 2 296 371 717748780 717748855 1.700000e-19 108.0
10 TraesCS7A01G361000 chr7A 94.030 67 4 0 2030 2096 79777185 79777251 7.890000e-18 102.0
11 TraesCS7A01G361000 chr7B 94.539 2124 43 19 2240 4312 489828444 489826343 0.000000e+00 3212.0
12 TraesCS7A01G361000 chr7B 93.462 1820 59 27 410 2208 489830401 489828621 0.000000e+00 2647.0
13 TraesCS7A01G361000 chr7B 80.045 446 73 10 1345 1788 571688960 571688529 2.590000e-82 316.0
14 TraesCS7A01G361000 chr7B 96.753 154 5 0 4304 4457 489819793 489819640 1.590000e-64 257.0
15 TraesCS7A01G361000 chr7B 90.722 97 8 1 2436 2532 107620946 107620851 1.300000e-25 128.0
16 TraesCS7A01G361000 chr7B 78.417 139 20 7 2551 2688 499616094 499616223 1.030000e-11 82.4
17 TraesCS7A01G361000 chr7D 90.051 1749 113 26 410 2134 465168134 465166423 0.000000e+00 2209.0
18 TraesCS7A01G361000 chr7D 89.369 1759 152 25 2719 4456 465166243 465164499 0.000000e+00 2180.0
19 TraesCS7A01G361000 chr7D 80.120 498 72 14 1345 1833 531195573 531195094 3.300000e-91 346.0
20 TraesCS7A01G361000 chr7D 78.710 465 71 15 1345 1795 531595046 531595496 7.300000e-73 285.0
21 TraesCS7A01G361000 chr7D 90.909 99 8 1 2434 2532 446519213 446519116 1.010000e-26 132.0
22 TraesCS7A01G361000 chr7D 91.489 47 3 1 366 412 465168202 465168157 3.720000e-06 63.9
23 TraesCS7A01G361000 chr3B 93.750 96 5 1 2437 2532 452550905 452550999 4.650000e-30 143.0
24 TraesCS7A01G361000 chr3B 89.655 87 6 2 296 382 380683923 380683840 1.700000e-19 108.0
25 TraesCS7A01G361000 chr3A 95.556 90 3 1 1 90 163893550 163893462 4.650000e-30 143.0
26 TraesCS7A01G361000 chr3A 91.000 100 8 1 2433 2532 573503765 573503667 2.800000e-27 134.0
27 TraesCS7A01G361000 chr6D 96.471 85 3 0 1 85 454064225 454064141 1.670000e-29 141.0
28 TraesCS7A01G361000 chr5B 96.471 85 2 1 1 85 589664448 589664365 6.010000e-29 139.0
29 TraesCS7A01G361000 chr5B 92.708 96 6 1 2437 2532 214108404 214108498 2.160000e-28 137.0
30 TraesCS7A01G361000 chr5B 82.692 156 23 4 2283 2437 139148800 139148952 7.780000e-28 135.0
31 TraesCS7A01G361000 chr5B 90.123 81 7 1 293 373 664458864 664458943 2.190000e-18 104.0
32 TraesCS7A01G361000 chr4B 93.548 93 5 1 2440 2532 24837253 24837162 2.160000e-28 137.0
33 TraesCS7A01G361000 chr4B 90.099 101 9 1 2432 2532 64114132 64114033 3.620000e-26 130.0
34 TraesCS7A01G361000 chr4B 93.243 74 4 1 296 369 295701931 295702003 1.700000e-19 108.0
35 TraesCS7A01G361000 chr4A 92.708 96 5 2 1 96 137523138 137523231 2.160000e-28 137.0
36 TraesCS7A01G361000 chr4A 94.382 89 5 0 1 89 578378958 578378870 2.160000e-28 137.0
37 TraesCS7A01G361000 chr1A 94.382 89 4 1 1 89 556086434 556086521 7.780000e-28 135.0
38 TraesCS7A01G361000 chr1A 92.553 94 6 1 1 93 554783322 554783415 2.800000e-27 134.0
39 TraesCS7A01G361000 chr5A 91.579 95 6 2 1 93 569527324 569527230 3.620000e-26 130.0
40 TraesCS7A01G361000 chr3D 89.423 104 9 2 2430 2532 610540105 610540003 3.620000e-26 130.0
41 TraesCS7A01G361000 chr3D 92.208 77 4 2 296 371 587947450 587947375 1.700000e-19 108.0
42 TraesCS7A01G361000 chr3D 81.579 76 7 3 2558 2631 575700090 575700020 6.230000e-04 56.5
43 TraesCS7A01G361000 chr4D 89.320 103 10 1 1 102 449386751 449386853 1.300000e-25 128.0
44 TraesCS7A01G361000 chr5D 87.037 108 13 1 2331 2437 126249410 126249517 2.180000e-23 121.0
45 TraesCS7A01G361000 chr5D 86.765 68 5 2 2594 2661 432844819 432844882 6.180000e-09 73.1
46 TraesCS7A01G361000 chr1D 92.771 83 3 2 296 377 495253019 495253099 2.820000e-22 117.0
47 TraesCS7A01G361000 chr1D 93.333 75 3 1 294 368 402722651 402722723 4.710000e-20 110.0
48 TraesCS7A01G361000 chr1D 92.105 76 4 1 294 369 58438799 58438872 6.100000e-19 106.0
49 TraesCS7A01G361000 chr2B 93.243 74 3 1 296 369 46846152 46846081 1.700000e-19 108.0
50 TraesCS7A01G361000 chr2B 83.721 86 14 0 1542 1627 141205250 141205165 1.030000e-11 82.4
51 TraesCS7A01G361000 chr2D 90.000 60 6 0 1567 1626 87839333 87839274 1.330000e-10 78.7
52 TraesCS7A01G361000 chr2D 93.182 44 2 1 2541 2584 26383160 26383118 3.720000e-06 63.9
53 TraesCS7A01G361000 chr2A 95.455 44 2 0 2541 2584 28680073 28680030 2.220000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G361000 chr7A 534442805 534447261 4456 False 8231.000000 8231 100.000000 1 4457 1 chr7A.!!$F2 4456
1 TraesCS7A01G361000 chr7A 79811852 79813700 1848 False 564.000000 647 89.134000 1591 3459 2 chr7A.!!$F6 1868
2 TraesCS7A01G361000 chr7A 79776736 79781415 4679 False 475.666667 713 91.026333 1542 3459 3 chr7A.!!$F5 1917
3 TraesCS7A01G361000 chr7B 489826343 489830401 4058 True 2929.500000 3212 94.000500 410 4312 2 chr7B.!!$R4 3902
4 TraesCS7A01G361000 chr7D 465164499 465168202 3703 True 1484.300000 2209 90.303000 366 4456 3 chr7D.!!$R3 4090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.040246 GCGTATGCGTACTCCTCCTC 60.040 60.000 14.01 0.0 40.81 3.71 F
247 248 0.180406 ATCATACAAGTGGGACCGCC 59.820 55.000 0.00 0.0 0.00 6.13 F
968 1005 0.385029 CTGGAGAGTGAGCAGGATCG 59.615 60.000 0.00 0.0 0.00 3.69 F
970 1007 0.753479 GGAGAGTGAGCAGGATCGGA 60.753 60.000 0.00 0.0 0.00 4.55 F
974 1011 1.137872 GAGTGAGCAGGATCGGATTGT 59.862 52.381 0.00 0.0 0.00 2.71 F
1095 1157 1.406887 GCGTTCAGAATCCCCTGCTTA 60.407 52.381 0.00 0.0 34.28 3.09 F
1251 1313 1.924524 CACCAATTCGCAGGTACGTAG 59.075 52.381 0.00 0.0 36.07 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1086 1146 1.106285 GCAGGACAAATAAGCAGGGG 58.894 55.000 0.00 0.00 0.00 4.79 R
1169 1231 1.202580 CCTGCCATTAGAGGAACGGAG 60.203 57.143 0.00 0.00 0.00 4.63 R
2920 6499 1.541310 CGCCCAAGGATAGCCCGATA 61.541 60.000 0.00 0.00 40.87 2.92 R
3062 6817 2.299297 CCGAGTGAGGAACTGTTAACCT 59.701 50.000 2.48 0.74 41.55 3.50 R
3243 7001 2.102578 GGGCTGTTGGCATTGTAGAAT 58.897 47.619 0.00 0.00 44.01 2.40 R
3316 7074 7.175347 TGAGATCCACTAATGCCATATAGAC 57.825 40.000 0.00 0.00 0.00 2.59 R
3486 7244 0.458669 CATTGATCACCAAGCAGCCC 59.541 55.000 0.00 0.00 38.31 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.971922 TTTACTTCTAGTGTTCTTTGTACTACC 57.028 33.333 0.00 0.00 0.00 3.18
43 44 7.836479 ACTTCTAGTGTTCTTTGTACTACCT 57.164 36.000 0.00 0.00 0.00 3.08
44 45 8.247666 ACTTCTAGTGTTCTTTGTACTACCTT 57.752 34.615 0.00 0.00 0.00 3.50
45 46 8.142551 ACTTCTAGTGTTCTTTGTACTACCTTG 58.857 37.037 0.00 0.00 0.00 3.61
46 47 7.828508 TCTAGTGTTCTTTGTACTACCTTGA 57.171 36.000 0.00 0.00 0.00 3.02
47 48 7.655490 TCTAGTGTTCTTTGTACTACCTTGAC 58.345 38.462 0.00 0.00 0.00 3.18
48 49 6.229936 AGTGTTCTTTGTACTACCTTGACA 57.770 37.500 0.00 0.00 0.00 3.58
49 50 6.281405 AGTGTTCTTTGTACTACCTTGACAG 58.719 40.000 0.00 0.00 0.00 3.51
50 51 6.047231 GTGTTCTTTGTACTACCTTGACAGT 58.953 40.000 0.00 0.00 0.00 3.55
51 52 6.537660 GTGTTCTTTGTACTACCTTGACAGTT 59.462 38.462 0.00 0.00 0.00 3.16
52 53 6.537301 TGTTCTTTGTACTACCTTGACAGTTG 59.463 38.462 0.00 0.00 0.00 3.16
53 54 6.474140 TCTTTGTACTACCTTGACAGTTGA 57.526 37.500 0.00 0.00 0.00 3.18
54 55 7.062749 TCTTTGTACTACCTTGACAGTTGAT 57.937 36.000 0.00 0.00 0.00 2.57
55 56 6.929049 TCTTTGTACTACCTTGACAGTTGATG 59.071 38.462 0.00 0.00 0.00 3.07
56 57 6.413783 TTGTACTACCTTGACAGTTGATGA 57.586 37.500 0.00 0.00 0.00 2.92
57 58 6.413783 TGTACTACCTTGACAGTTGATGAA 57.586 37.500 0.00 0.00 0.00 2.57
58 59 7.004555 TGTACTACCTTGACAGTTGATGAAT 57.995 36.000 0.00 0.00 0.00 2.57
59 60 8.129496 TGTACTACCTTGACAGTTGATGAATA 57.871 34.615 0.00 0.00 0.00 1.75
60 61 8.590204 TGTACTACCTTGACAGTTGATGAATAA 58.410 33.333 0.00 0.00 0.00 1.40
61 62 9.431887 GTACTACCTTGACAGTTGATGAATAAA 57.568 33.333 0.00 0.00 0.00 1.40
63 64 9.167311 ACTACCTTGACAGTTGATGAATAAATC 57.833 33.333 0.00 0.00 0.00 2.17
64 65 7.076842 ACCTTGACAGTTGATGAATAAATCG 57.923 36.000 0.00 0.00 0.00 3.34
65 66 6.878923 ACCTTGACAGTTGATGAATAAATCGA 59.121 34.615 0.00 0.00 0.00 3.59
66 67 7.390440 ACCTTGACAGTTGATGAATAAATCGAA 59.610 33.333 0.00 0.00 0.00 3.71
67 68 8.236586 CCTTGACAGTTGATGAATAAATCGAAA 58.763 33.333 0.00 0.00 0.00 3.46
68 69 9.270576 CTTGACAGTTGATGAATAAATCGAAAG 57.729 33.333 0.00 0.00 0.00 2.62
69 70 8.322906 TGACAGTTGATGAATAAATCGAAAGT 57.677 30.769 0.00 0.00 0.00 2.66
70 71 8.783093 TGACAGTTGATGAATAAATCGAAAGTT 58.217 29.630 0.00 0.00 0.00 2.66
71 72 9.612620 GACAGTTGATGAATAAATCGAAAGTTT 57.387 29.630 0.00 0.00 0.00 2.66
72 73 9.965824 ACAGTTGATGAATAAATCGAAAGTTTT 57.034 25.926 0.00 0.00 36.93 2.43
76 77 9.541724 TTGATGAATAAATCGAAAGTTTTCTCG 57.458 29.630 0.00 0.00 34.97 4.04
77 78 7.692291 TGATGAATAAATCGAAAGTTTTCTCGC 59.308 33.333 0.00 0.00 34.97 5.03
78 79 6.893759 TGAATAAATCGAAAGTTTTCTCGCA 58.106 32.000 0.00 0.00 34.97 5.10
79 80 7.356540 TGAATAAATCGAAAGTTTTCTCGCAA 58.643 30.769 0.00 0.00 34.97 4.85
80 81 7.858382 TGAATAAATCGAAAGTTTTCTCGCAAA 59.142 29.630 0.00 0.00 34.97 3.68
81 82 8.568732 AATAAATCGAAAGTTTTCTCGCAAAA 57.431 26.923 0.00 0.00 34.97 2.44
82 83 6.879188 AAATCGAAAGTTTTCTCGCAAAAA 57.121 29.167 0.00 0.00 35.07 1.94
105 106 6.834168 AAACAGAGTTGAAAAAGAAGGTCA 57.166 33.333 0.00 0.00 0.00 4.02
106 107 6.442513 AACAGAGTTGAAAAAGAAGGTCAG 57.557 37.500 0.00 0.00 0.00 3.51
107 108 5.745227 ACAGAGTTGAAAAAGAAGGTCAGA 58.255 37.500 0.00 0.00 0.00 3.27
108 109 6.360618 ACAGAGTTGAAAAAGAAGGTCAGAT 58.639 36.000 0.00 0.00 0.00 2.90
109 110 6.261826 ACAGAGTTGAAAAAGAAGGTCAGATG 59.738 38.462 0.00 0.00 0.00 2.90
110 111 6.484643 CAGAGTTGAAAAAGAAGGTCAGATGA 59.515 38.462 0.00 0.00 0.00 2.92
111 112 6.709846 AGAGTTGAAAAAGAAGGTCAGATGAG 59.290 38.462 0.00 0.00 0.00 2.90
112 113 6.360618 AGTTGAAAAAGAAGGTCAGATGAGT 58.639 36.000 0.00 0.00 0.00 3.41
113 114 7.509546 AGTTGAAAAAGAAGGTCAGATGAGTA 58.490 34.615 0.00 0.00 0.00 2.59
114 115 7.659390 AGTTGAAAAAGAAGGTCAGATGAGTAG 59.341 37.037 0.00 0.00 0.00 2.57
115 116 5.934625 TGAAAAAGAAGGTCAGATGAGTAGC 59.065 40.000 0.00 0.00 0.00 3.58
116 117 5.489792 AAAAGAAGGTCAGATGAGTAGCA 57.510 39.130 0.00 0.00 0.00 3.49
117 118 5.690464 AAAGAAGGTCAGATGAGTAGCAT 57.310 39.130 0.00 0.00 40.77 3.79
118 119 4.669206 AGAAGGTCAGATGAGTAGCATG 57.331 45.455 0.00 0.00 37.34 4.06
119 120 4.029520 AGAAGGTCAGATGAGTAGCATGT 58.970 43.478 0.00 0.00 37.34 3.21
120 121 5.204292 AGAAGGTCAGATGAGTAGCATGTA 58.796 41.667 0.00 0.00 37.34 2.29
121 122 5.837979 AGAAGGTCAGATGAGTAGCATGTAT 59.162 40.000 0.00 0.00 37.34 2.29
122 123 7.007116 AGAAGGTCAGATGAGTAGCATGTATA 58.993 38.462 0.00 0.00 37.34 1.47
123 124 7.673504 AGAAGGTCAGATGAGTAGCATGTATAT 59.326 37.037 0.00 0.00 37.34 0.86
124 125 7.789202 AGGTCAGATGAGTAGCATGTATATT 57.211 36.000 0.00 0.00 37.34 1.28
125 126 8.200024 AGGTCAGATGAGTAGCATGTATATTT 57.800 34.615 0.00 0.00 37.34 1.40
126 127 9.314133 AGGTCAGATGAGTAGCATGTATATTTA 57.686 33.333 0.00 0.00 37.34 1.40
134 135 9.758651 TGAGTAGCATGTATATTTATTTGTCGT 57.241 29.630 0.00 0.00 0.00 4.34
165 166 7.948034 AGTACTACTAGTTTTCATGAGAGCT 57.052 36.000 0.00 7.73 0.00 4.09
166 167 8.356000 AGTACTACTAGTTTTCATGAGAGCTT 57.644 34.615 7.91 0.00 0.00 3.74
167 168 9.463902 AGTACTACTAGTTTTCATGAGAGCTTA 57.536 33.333 7.91 0.00 0.00 3.09
170 171 8.754080 ACTACTAGTTTTCATGAGAGCTTATGT 58.246 33.333 7.91 7.75 0.00 2.29
171 172 9.243637 CTACTAGTTTTCATGAGAGCTTATGTC 57.756 37.037 7.91 0.00 0.00 3.06
172 173 7.615403 ACTAGTTTTCATGAGAGCTTATGTCA 58.385 34.615 7.91 0.00 35.33 3.58
173 174 6.981762 AGTTTTCATGAGAGCTTATGTCAG 57.018 37.500 0.00 0.00 34.15 3.51
174 175 5.353678 AGTTTTCATGAGAGCTTATGTCAGC 59.646 40.000 0.00 0.00 40.44 4.26
182 183 2.937994 GCTTATGTCAGCTGCGTATG 57.062 50.000 9.47 12.47 36.79 2.39
183 184 1.070309 GCTTATGTCAGCTGCGTATGC 60.070 52.381 21.06 21.06 43.20 3.14
193 194 4.630097 GCGTATGCGTACTCCTCC 57.370 61.111 14.01 0.00 40.81 4.30
194 195 2.031360 GCGTATGCGTACTCCTCCT 58.969 57.895 14.01 0.00 40.81 3.69
195 196 0.040246 GCGTATGCGTACTCCTCCTC 60.040 60.000 14.01 0.00 40.81 3.71
196 197 1.595466 CGTATGCGTACTCCTCCTCT 58.405 55.000 14.01 0.00 0.00 3.69
197 198 1.948145 CGTATGCGTACTCCTCCTCTT 59.052 52.381 14.01 0.00 0.00 2.85
198 199 2.287069 CGTATGCGTACTCCTCCTCTTG 60.287 54.545 14.01 0.00 0.00 3.02
199 200 2.145397 ATGCGTACTCCTCCTCTTGA 57.855 50.000 0.00 0.00 0.00 3.02
200 201 1.464734 TGCGTACTCCTCCTCTTGAG 58.535 55.000 0.00 0.00 41.07 3.02
210 211 2.733956 CTCCTCTTGAGGCTCTGTAGT 58.266 52.381 16.72 0.00 37.45 2.73
211 212 2.426738 CTCCTCTTGAGGCTCTGTAGTG 59.573 54.545 16.72 10.58 37.45 2.74
212 213 2.175202 CCTCTTGAGGCTCTGTAGTGT 58.825 52.381 16.72 0.00 0.00 3.55
213 214 2.094286 CCTCTTGAGGCTCTGTAGTGTG 60.094 54.545 16.72 5.92 0.00 3.82
214 215 1.895798 TCTTGAGGCTCTGTAGTGTGG 59.104 52.381 16.72 0.00 0.00 4.17
215 216 1.620819 CTTGAGGCTCTGTAGTGTGGT 59.379 52.381 16.72 0.00 0.00 4.16
216 217 0.969149 TGAGGCTCTGTAGTGTGGTG 59.031 55.000 16.72 0.00 0.00 4.17
217 218 0.969894 GAGGCTCTGTAGTGTGGTGT 59.030 55.000 7.40 0.00 0.00 4.16
218 219 2.168496 GAGGCTCTGTAGTGTGGTGTA 58.832 52.381 7.40 0.00 0.00 2.90
219 220 2.761208 GAGGCTCTGTAGTGTGGTGTAT 59.239 50.000 7.40 0.00 0.00 2.29
220 221 3.173965 AGGCTCTGTAGTGTGGTGTATT 58.826 45.455 0.00 0.00 0.00 1.89
221 222 3.055819 AGGCTCTGTAGTGTGGTGTATTG 60.056 47.826 0.00 0.00 0.00 1.90
222 223 2.673368 GCTCTGTAGTGTGGTGTATTGC 59.327 50.000 0.00 0.00 0.00 3.56
223 224 3.864540 GCTCTGTAGTGTGGTGTATTGCA 60.865 47.826 0.00 0.00 0.00 4.08
224 225 3.925379 TCTGTAGTGTGGTGTATTGCAG 58.075 45.455 0.00 0.00 0.00 4.41
225 226 3.576550 TCTGTAGTGTGGTGTATTGCAGA 59.423 43.478 0.00 0.00 0.00 4.26
226 227 4.039852 TCTGTAGTGTGGTGTATTGCAGAA 59.960 41.667 0.00 0.00 0.00 3.02
227 228 4.905429 TGTAGTGTGGTGTATTGCAGAAT 58.095 39.130 0.00 0.00 0.00 2.40
228 229 6.043854 TGTAGTGTGGTGTATTGCAGAATA 57.956 37.500 0.00 0.00 0.00 1.75
229 230 6.649155 TGTAGTGTGGTGTATTGCAGAATAT 58.351 36.000 0.00 0.00 0.00 1.28
230 231 6.761242 TGTAGTGTGGTGTATTGCAGAATATC 59.239 38.462 0.00 0.00 0.00 1.63
231 232 5.744171 AGTGTGGTGTATTGCAGAATATCA 58.256 37.500 0.00 0.00 0.00 2.15
232 233 6.359804 AGTGTGGTGTATTGCAGAATATCAT 58.640 36.000 0.00 0.00 0.00 2.45
233 234 7.508687 AGTGTGGTGTATTGCAGAATATCATA 58.491 34.615 0.00 0.00 0.00 2.15
234 235 7.442364 AGTGTGGTGTATTGCAGAATATCATAC 59.558 37.037 0.00 0.00 0.00 2.39
235 236 7.226523 GTGTGGTGTATTGCAGAATATCATACA 59.773 37.037 1.86 1.86 0.00 2.29
236 237 7.772757 TGTGGTGTATTGCAGAATATCATACAA 59.227 33.333 6.70 0.00 0.00 2.41
237 238 8.285394 GTGGTGTATTGCAGAATATCATACAAG 58.715 37.037 6.70 0.00 0.00 3.16
238 239 7.992608 TGGTGTATTGCAGAATATCATACAAGT 59.007 33.333 6.70 0.00 0.00 3.16
239 240 8.285394 GGTGTATTGCAGAATATCATACAAGTG 58.715 37.037 6.70 0.00 0.00 3.16
240 241 8.285394 GTGTATTGCAGAATATCATACAAGTGG 58.715 37.037 6.70 0.00 0.00 4.00
241 242 6.889301 ATTGCAGAATATCATACAAGTGGG 57.111 37.500 0.00 0.00 0.00 4.61
242 243 5.628797 TGCAGAATATCATACAAGTGGGA 57.371 39.130 0.00 0.00 0.00 4.37
243 244 5.368145 TGCAGAATATCATACAAGTGGGAC 58.632 41.667 0.00 0.00 0.00 4.46
244 245 4.757149 GCAGAATATCATACAAGTGGGACC 59.243 45.833 0.00 0.00 0.00 4.46
245 246 4.991056 CAGAATATCATACAAGTGGGACCG 59.009 45.833 0.00 0.00 0.00 4.79
246 247 2.902705 TATCATACAAGTGGGACCGC 57.097 50.000 0.00 0.00 0.00 5.68
247 248 0.180406 ATCATACAAGTGGGACCGCC 59.820 55.000 0.00 0.00 0.00 6.13
248 249 1.813753 CATACAAGTGGGACCGCCG 60.814 63.158 0.00 0.00 33.83 6.46
249 250 1.985662 ATACAAGTGGGACCGCCGA 60.986 57.895 0.00 0.00 33.83 5.54
250 251 1.956629 ATACAAGTGGGACCGCCGAG 61.957 60.000 0.00 0.00 33.83 4.63
251 252 3.691342 CAAGTGGGACCGCCGAGA 61.691 66.667 0.00 0.00 33.83 4.04
252 253 2.920912 AAGTGGGACCGCCGAGAA 60.921 61.111 0.00 0.00 33.83 2.87
253 254 3.236003 AAGTGGGACCGCCGAGAAC 62.236 63.158 0.00 0.00 33.83 3.01
254 255 3.692406 GTGGGACCGCCGAGAACT 61.692 66.667 0.00 0.00 33.83 3.01
255 256 2.036098 TGGGACCGCCGAGAACTA 59.964 61.111 0.00 0.00 33.83 2.24
256 257 2.050350 TGGGACCGCCGAGAACTAG 61.050 63.158 0.00 0.00 33.83 2.57
257 258 2.104530 GGACCGCCGAGAACTAGC 59.895 66.667 0.00 0.00 0.00 3.42
275 276 3.223661 CGGAGCTTGAGACTTTGCT 57.776 52.632 0.00 0.00 38.59 3.91
276 277 0.795085 CGGAGCTTGAGACTTTGCTG 59.205 55.000 0.00 0.00 35.76 4.41
277 278 1.163554 GGAGCTTGAGACTTTGCTGG 58.836 55.000 0.00 0.00 35.76 4.85
278 279 1.163554 GAGCTTGAGACTTTGCTGGG 58.836 55.000 0.00 0.00 35.76 4.45
279 280 0.767375 AGCTTGAGACTTTGCTGGGA 59.233 50.000 0.00 0.00 34.19 4.37
280 281 1.143684 AGCTTGAGACTTTGCTGGGAA 59.856 47.619 0.00 0.00 34.19 3.97
281 282 2.165998 GCTTGAGACTTTGCTGGGAAT 58.834 47.619 0.00 0.00 0.00 3.01
282 283 2.560105 GCTTGAGACTTTGCTGGGAATT 59.440 45.455 0.00 0.00 0.00 2.17
283 284 3.366781 GCTTGAGACTTTGCTGGGAATTC 60.367 47.826 0.00 0.00 0.00 2.17
284 285 2.795329 TGAGACTTTGCTGGGAATTCC 58.205 47.619 16.74 16.74 0.00 3.01
306 307 4.855715 CGAGAGGCCTCATAATGTAAGA 57.144 45.455 33.90 0.00 39.39 2.10
307 308 5.398603 CGAGAGGCCTCATAATGTAAGAT 57.601 43.478 33.90 9.08 39.39 2.40
308 309 5.167121 CGAGAGGCCTCATAATGTAAGATG 58.833 45.833 33.90 4.64 39.39 2.90
309 310 5.279206 CGAGAGGCCTCATAATGTAAGATGT 60.279 44.000 33.90 8.38 39.39 3.06
310 311 6.506538 AGAGGCCTCATAATGTAAGATGTT 57.493 37.500 33.90 4.78 0.00 2.71
311 312 6.904626 AGAGGCCTCATAATGTAAGATGTTT 58.095 36.000 33.90 4.36 0.00 2.83
312 313 7.349598 AGAGGCCTCATAATGTAAGATGTTTT 58.650 34.615 33.90 3.98 0.00 2.43
313 314 7.836183 AGAGGCCTCATAATGTAAGATGTTTTT 59.164 33.333 33.90 3.63 0.00 1.94
360 361 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
361 362 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
362 363 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
363 364 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
364 365 4.100498 GTCTTACATTATGGGACGGAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
365 366 4.344102 TCTTACATTATGGGACGGAGGAAG 59.656 45.833 0.00 0.00 0.00 3.46
366 367 2.478292 ACATTATGGGACGGAGGAAGT 58.522 47.619 0.00 0.00 0.00 3.01
367 368 3.649843 ACATTATGGGACGGAGGAAGTA 58.350 45.455 0.00 0.00 0.00 2.24
368 369 4.232091 ACATTATGGGACGGAGGAAGTAT 58.768 43.478 0.00 0.00 0.00 2.12
369 370 4.658901 ACATTATGGGACGGAGGAAGTATT 59.341 41.667 0.00 0.00 0.00 1.89
370 371 5.842328 ACATTATGGGACGGAGGAAGTATTA 59.158 40.000 0.00 0.00 0.00 0.98
376 377 5.013391 TGGGACGGAGGAAGTATTAAAAACT 59.987 40.000 0.00 0.00 0.00 2.66
378 379 5.353400 GGACGGAGGAAGTATTAAAAACTGG 59.647 44.000 0.00 0.00 0.00 4.00
380 381 4.095932 CGGAGGAAGTATTAAAAACTGGGC 59.904 45.833 0.00 0.00 0.00 5.36
419 445 6.147492 TCGTCGGAAAGAGCTAGTAGATTATC 59.853 42.308 0.00 0.00 0.00 1.75
513 539 3.047877 CCCACAACGACCTTCCGC 61.048 66.667 0.00 0.00 0.00 5.54
557 583 1.797713 CGCCATAGTGTCGACATCGTT 60.798 52.381 23.12 10.43 40.80 3.85
598 624 2.382746 GCGTCCCCCGTAACGAAAC 61.383 63.158 0.00 0.00 41.29 2.78
801 827 2.202756 GCTCGGGGATGACGACAC 60.203 66.667 0.00 0.00 36.25 3.67
901 937 1.654137 GCCGCGCGGTGATAAATTG 60.654 57.895 45.02 19.96 37.65 2.32
959 996 1.880675 GTCGACTGTTCTGGAGAGTGA 59.119 52.381 8.70 0.00 0.00 3.41
960 997 2.095466 GTCGACTGTTCTGGAGAGTGAG 60.095 54.545 8.70 0.00 0.00 3.51
961 998 1.402194 CGACTGTTCTGGAGAGTGAGC 60.402 57.143 0.00 0.00 0.00 4.26
962 999 1.615883 GACTGTTCTGGAGAGTGAGCA 59.384 52.381 0.00 0.00 0.00 4.26
963 1000 1.617850 ACTGTTCTGGAGAGTGAGCAG 59.382 52.381 0.00 0.00 43.78 4.24
964 1001 0.972134 TGTTCTGGAGAGTGAGCAGG 59.028 55.000 0.00 0.00 0.00 4.85
965 1002 1.261480 GTTCTGGAGAGTGAGCAGGA 58.739 55.000 0.00 0.00 0.00 3.86
966 1003 1.830477 GTTCTGGAGAGTGAGCAGGAT 59.170 52.381 0.00 0.00 0.00 3.24
967 1004 1.774110 TCTGGAGAGTGAGCAGGATC 58.226 55.000 0.00 0.00 0.00 3.36
968 1005 0.385029 CTGGAGAGTGAGCAGGATCG 59.615 60.000 0.00 0.00 0.00 3.69
969 1006 1.039785 TGGAGAGTGAGCAGGATCGG 61.040 60.000 0.00 0.00 0.00 4.18
970 1007 0.753479 GGAGAGTGAGCAGGATCGGA 60.753 60.000 0.00 0.00 0.00 4.55
971 1008 1.327303 GAGAGTGAGCAGGATCGGAT 58.673 55.000 0.00 0.00 0.00 4.18
972 1009 1.686052 GAGAGTGAGCAGGATCGGATT 59.314 52.381 0.00 0.00 0.00 3.01
973 1010 1.411977 AGAGTGAGCAGGATCGGATTG 59.588 52.381 0.00 0.00 0.00 2.67
974 1011 1.137872 GAGTGAGCAGGATCGGATTGT 59.862 52.381 0.00 0.00 0.00 2.71
975 1012 1.556911 AGTGAGCAGGATCGGATTGTT 59.443 47.619 0.00 0.00 0.00 2.83
976 1013 2.766263 AGTGAGCAGGATCGGATTGTTA 59.234 45.455 0.00 0.00 0.00 2.41
977 1014 3.389329 AGTGAGCAGGATCGGATTGTTAT 59.611 43.478 0.00 0.00 0.00 1.89
978 1015 4.130118 GTGAGCAGGATCGGATTGTTATT 58.870 43.478 0.00 0.00 0.00 1.40
979 1016 4.212214 GTGAGCAGGATCGGATTGTTATTC 59.788 45.833 0.00 0.00 0.00 1.75
980 1017 4.101585 TGAGCAGGATCGGATTGTTATTCT 59.898 41.667 0.00 0.00 0.00 2.40
981 1018 5.304357 TGAGCAGGATCGGATTGTTATTCTA 59.696 40.000 0.00 0.00 0.00 2.10
982 1019 6.014242 TGAGCAGGATCGGATTGTTATTCTAT 60.014 38.462 0.00 0.00 0.00 1.98
1021 1058 2.095252 GCGTTCTTCGAGGTGAGCC 61.095 63.158 0.00 0.00 42.86 4.70
1057 1117 6.780031 TCCTCTCTTCTTCTTCTTCTTCTTCA 59.220 38.462 0.00 0.00 0.00 3.02
1095 1157 1.406887 GCGTTCAGAATCCCCTGCTTA 60.407 52.381 0.00 0.00 34.28 3.09
1165 1227 6.687105 GTGAAGAAATTCGTTAATCATTCGGG 59.313 38.462 0.00 0.00 0.00 5.14
1167 1229 6.753107 AGAAATTCGTTAATCATTCGGGTT 57.247 33.333 0.00 0.00 0.00 4.11
1169 1231 7.248437 AGAAATTCGTTAATCATTCGGGTTTC 58.752 34.615 0.00 0.00 33.45 2.78
1251 1313 1.924524 CACCAATTCGCAGGTACGTAG 59.075 52.381 0.00 0.00 36.07 3.51
1836 1912 4.200283 CTGCTCGAGGACGGCTCC 62.200 72.222 15.58 0.00 40.21 4.70
1839 1915 3.522731 CTCGAGGACGGCTCCCTG 61.523 72.222 3.91 0.00 37.25 4.45
1840 1916 4.361971 TCGAGGACGGCTCCCTGT 62.362 66.667 0.00 0.00 37.25 4.00
2221 5384 7.918033 TCAGACAACTTAAAATTCGCAAAATCA 59.082 29.630 0.00 0.00 0.00 2.57
2449 5988 6.887886 TGATAGTATATAGTCCCTCCGTCT 57.112 41.667 0.00 0.00 0.00 4.18
2456 5995 6.749036 ATATAGTCCCTCCGTCTGAAAAAT 57.251 37.500 0.00 0.00 0.00 1.82
2484 6023 4.037923 GTCCCAAGCTTGTCTTTCAAATGA 59.962 41.667 24.35 3.25 35.48 2.57
2574 6130 6.105333 GCCATTTGTATGCTTGTTTAATGGA 58.895 36.000 13.49 0.00 41.80 3.41
2699 6255 7.396540 AAATCACTTTTACAGGAGCTATTGG 57.603 36.000 0.00 0.00 0.00 3.16
2700 6256 5.755409 TCACTTTTACAGGAGCTATTGGA 57.245 39.130 0.00 0.00 0.00 3.53
2701 6257 5.734720 TCACTTTTACAGGAGCTATTGGAG 58.265 41.667 0.00 0.00 0.00 3.86
2702 6258 5.483937 TCACTTTTACAGGAGCTATTGGAGA 59.516 40.000 0.00 0.00 0.00 3.71
2707 6263 2.368221 ACAGGAGCTATTGGAGATGCTC 59.632 50.000 5.38 5.38 40.77 4.26
2708 6264 2.633967 CAGGAGCTATTGGAGATGCTCT 59.366 50.000 12.52 0.00 40.77 4.09
2895 6474 8.948631 TGTATTCTCAACAAGATTATGGAGAC 57.051 34.615 0.00 0.00 32.82 3.36
2920 6499 5.308825 GGGATTGTATCTCATTCGGTGATT 58.691 41.667 0.00 0.00 35.97 2.57
3062 6817 6.899393 ATGTCCACTTCATTTTTGCTCTAA 57.101 33.333 0.00 0.00 0.00 2.10
3083 6838 2.299297 AGGTTAACAGTTCCTCACTCGG 59.701 50.000 8.10 0.00 30.92 4.63
3252 7010 2.548067 GGGGATCGCGTCATTCTACAAT 60.548 50.000 5.77 0.00 0.00 2.71
3316 7074 6.652481 GGATTCAATGTCATCTGGTATACTGG 59.348 42.308 2.25 0.00 0.00 4.00
3486 7244 3.545703 AGGATTATTGAAGCTTGGGACG 58.454 45.455 2.10 0.00 0.00 4.79
3532 7290 2.418746 CGACTTGTTGCCTAGCTACCAT 60.419 50.000 0.00 0.00 33.72 3.55
3788 7548 6.531594 TCTGTTCTCAAGTATAATCTTGCACG 59.468 38.462 0.00 0.00 42.90 5.34
3799 7559 3.680642 ATCTTGCACGTACATCAATGC 57.319 42.857 0.00 0.00 38.59 3.56
3806 7566 2.472861 CACGTACATCAATGCGGATCTC 59.527 50.000 0.00 0.00 0.00 2.75
3836 7596 4.091509 GTCGCTTCAACTGTTCGAATACAT 59.908 41.667 0.00 0.00 0.00 2.29
3989 7749 8.606040 TCATACGAAGATTGAATATGATGCAA 57.394 30.769 0.00 0.00 29.45 4.08
3998 7758 9.745880 AGATTGAATATGATGCAACAGAAATTC 57.254 29.630 16.20 16.20 0.00 2.17
4079 7840 4.140536 TGCAGATTCATTTGTACACCACA 58.859 39.130 0.00 0.00 34.51 4.17
4118 7879 7.741027 AATACAGTTCATTCATCTATGCCTG 57.259 36.000 0.00 0.00 33.82 4.85
4170 7937 5.000012 AGCTAGACGACTTTGGTAGATTG 58.000 43.478 0.00 0.00 0.00 2.67
4247 8014 4.759183 TGCTTGTGCTGAACAACACATATA 59.241 37.500 10.97 0.00 45.59 0.86
4352 8123 5.125900 CCAATGTTCTCTGTTGATGGCATTA 59.874 40.000 0.00 0.00 0.00 1.90
4354 8125 4.650734 TGTTCTCTGTTGATGGCATTACA 58.349 39.130 0.00 8.70 0.00 2.41
4365 8136 3.878160 TGGCATTACACATACTGTCGA 57.122 42.857 0.00 0.00 33.91 4.20
4380 8151 8.443160 ACATACTGTCGACAAATGTAAGATTTG 58.557 33.333 30.36 20.21 42.81 2.32
4390 8161 8.627208 ACAAATGTAAGATTTGTGATCTGAGT 57.373 30.769 12.68 0.00 46.67 3.41
4396 8167 9.554395 TGTAAGATTTGTGATCTGAGTGTTTTA 57.446 29.630 0.00 0.00 0.00 1.52
4409 8180 5.865085 TGAGTGTTTTACCTAGAGTGCATT 58.135 37.500 0.00 0.00 0.00 3.56
4417 8188 4.844349 ACCTAGAGTGCATTTGTATGGT 57.156 40.909 0.00 0.00 32.15 3.55
4434 8205 0.962855 GGTTTTCCAGCAGAGGCCTC 60.963 60.000 26.22 26.22 42.56 4.70
4451 8222 3.501445 GGCCTCTGAGCAAACATATGATC 59.499 47.826 10.38 0.28 36.30 2.92
4456 8227 3.216800 TGAGCAAACATATGATCCAGGC 58.783 45.455 10.38 4.31 34.89 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.971922 GGTAGTACAAAGAACACTAGAAGTAAA 57.028 33.333 2.06 0.00 0.00 2.01
17 18 9.359653 AGGTAGTACAAAGAACACTAGAAGTAA 57.640 33.333 2.06 0.00 0.00 2.24
18 19 8.930846 AGGTAGTACAAAGAACACTAGAAGTA 57.069 34.615 2.06 0.00 0.00 2.24
19 20 7.836479 AGGTAGTACAAAGAACACTAGAAGT 57.164 36.000 2.06 0.00 0.00 3.01
20 21 8.358148 TCAAGGTAGTACAAAGAACACTAGAAG 58.642 37.037 2.06 0.00 0.00 2.85
21 22 8.139989 GTCAAGGTAGTACAAAGAACACTAGAA 58.860 37.037 2.06 0.00 0.00 2.10
22 23 7.286087 TGTCAAGGTAGTACAAAGAACACTAGA 59.714 37.037 2.06 0.00 0.00 2.43
23 24 7.431249 TGTCAAGGTAGTACAAAGAACACTAG 58.569 38.462 2.06 0.00 0.00 2.57
24 25 7.069085 ACTGTCAAGGTAGTACAAAGAACACTA 59.931 37.037 2.06 0.00 0.00 2.74
25 26 6.127140 ACTGTCAAGGTAGTACAAAGAACACT 60.127 38.462 2.06 0.00 0.00 3.55
26 27 6.047231 ACTGTCAAGGTAGTACAAAGAACAC 58.953 40.000 2.06 0.00 0.00 3.32
27 28 6.229936 ACTGTCAAGGTAGTACAAAGAACA 57.770 37.500 2.06 0.00 0.00 3.18
28 29 6.759827 TCAACTGTCAAGGTAGTACAAAGAAC 59.240 38.462 2.06 0.00 0.00 3.01
29 30 6.880484 TCAACTGTCAAGGTAGTACAAAGAA 58.120 36.000 2.06 0.00 0.00 2.52
30 31 6.474140 TCAACTGTCAAGGTAGTACAAAGA 57.526 37.500 2.06 0.00 0.00 2.52
31 32 6.929049 TCATCAACTGTCAAGGTAGTACAAAG 59.071 38.462 2.06 0.00 0.00 2.77
32 33 6.822442 TCATCAACTGTCAAGGTAGTACAAA 58.178 36.000 2.06 0.00 0.00 2.83
33 34 6.413783 TCATCAACTGTCAAGGTAGTACAA 57.586 37.500 2.06 0.00 0.00 2.41
34 35 6.413783 TTCATCAACTGTCAAGGTAGTACA 57.586 37.500 2.06 0.00 0.00 2.90
35 36 8.997621 TTATTCATCAACTGTCAAGGTAGTAC 57.002 34.615 0.00 0.00 0.00 2.73
37 38 9.167311 GATTTATTCATCAACTGTCAAGGTAGT 57.833 33.333 0.00 0.00 0.00 2.73
38 39 8.331022 CGATTTATTCATCAACTGTCAAGGTAG 58.669 37.037 0.00 0.00 0.00 3.18
39 40 8.038351 TCGATTTATTCATCAACTGTCAAGGTA 58.962 33.333 0.00 0.00 0.00 3.08
40 41 6.878923 TCGATTTATTCATCAACTGTCAAGGT 59.121 34.615 0.00 0.00 0.00 3.50
41 42 7.307493 TCGATTTATTCATCAACTGTCAAGG 57.693 36.000 0.00 0.00 0.00 3.61
42 43 9.270576 CTTTCGATTTATTCATCAACTGTCAAG 57.729 33.333 0.00 0.00 0.00 3.02
43 44 8.783093 ACTTTCGATTTATTCATCAACTGTCAA 58.217 29.630 0.00 0.00 0.00 3.18
44 45 8.322906 ACTTTCGATTTATTCATCAACTGTCA 57.677 30.769 0.00 0.00 0.00 3.58
45 46 9.612620 AAACTTTCGATTTATTCATCAACTGTC 57.387 29.630 0.00 0.00 0.00 3.51
46 47 9.965824 AAAACTTTCGATTTATTCATCAACTGT 57.034 25.926 0.00 0.00 0.00 3.55
50 51 9.541724 CGAGAAAACTTTCGATTTATTCATCAA 57.458 29.630 0.00 0.00 41.92 2.57
51 52 7.692291 GCGAGAAAACTTTCGATTTATTCATCA 59.308 33.333 0.00 0.00 41.92 3.07
52 53 7.692291 TGCGAGAAAACTTTCGATTTATTCATC 59.308 33.333 0.00 0.00 41.92 2.92
53 54 7.526608 TGCGAGAAAACTTTCGATTTATTCAT 58.473 30.769 0.00 0.00 41.92 2.57
54 55 6.893759 TGCGAGAAAACTTTCGATTTATTCA 58.106 32.000 0.00 0.00 41.92 2.57
55 56 7.775729 TTGCGAGAAAACTTTCGATTTATTC 57.224 32.000 0.00 0.00 41.92 1.75
56 57 8.568732 TTTTGCGAGAAAACTTTCGATTTATT 57.431 26.923 0.00 0.00 41.92 1.40
57 58 8.568732 TTTTTGCGAGAAAACTTTCGATTTAT 57.431 26.923 0.00 0.00 41.92 1.40
58 59 7.972623 TTTTTGCGAGAAAACTTTCGATTTA 57.027 28.000 0.00 0.00 41.92 1.40
59 60 6.879188 TTTTTGCGAGAAAACTTTCGATTT 57.121 29.167 0.00 0.00 41.92 2.17
80 81 7.666623 TGACCTTCTTTTTCAACTCTGTTTTT 58.333 30.769 0.00 0.00 0.00 1.94
81 82 7.176690 TCTGACCTTCTTTTTCAACTCTGTTTT 59.823 33.333 0.00 0.00 0.00 2.43
82 83 6.659242 TCTGACCTTCTTTTTCAACTCTGTTT 59.341 34.615 0.00 0.00 0.00 2.83
83 84 6.180472 TCTGACCTTCTTTTTCAACTCTGTT 58.820 36.000 0.00 0.00 0.00 3.16
84 85 5.745227 TCTGACCTTCTTTTTCAACTCTGT 58.255 37.500 0.00 0.00 0.00 3.41
85 86 6.484643 TCATCTGACCTTCTTTTTCAACTCTG 59.515 38.462 0.00 0.00 0.00 3.35
86 87 6.595682 TCATCTGACCTTCTTTTTCAACTCT 58.404 36.000 0.00 0.00 0.00 3.24
87 88 6.484977 ACTCATCTGACCTTCTTTTTCAACTC 59.515 38.462 0.00 0.00 0.00 3.01
88 89 6.360618 ACTCATCTGACCTTCTTTTTCAACT 58.639 36.000 0.00 0.00 0.00 3.16
89 90 6.625873 ACTCATCTGACCTTCTTTTTCAAC 57.374 37.500 0.00 0.00 0.00 3.18
90 91 6.428159 GCTACTCATCTGACCTTCTTTTTCAA 59.572 38.462 0.00 0.00 0.00 2.69
91 92 5.934625 GCTACTCATCTGACCTTCTTTTTCA 59.065 40.000 0.00 0.00 0.00 2.69
92 93 5.934625 TGCTACTCATCTGACCTTCTTTTTC 59.065 40.000 0.00 0.00 0.00 2.29
93 94 5.869579 TGCTACTCATCTGACCTTCTTTTT 58.130 37.500 0.00 0.00 0.00 1.94
94 95 5.489792 TGCTACTCATCTGACCTTCTTTT 57.510 39.130 0.00 0.00 0.00 2.27
95 96 5.046014 ACATGCTACTCATCTGACCTTCTTT 60.046 40.000 0.00 0.00 31.79 2.52
96 97 4.469227 ACATGCTACTCATCTGACCTTCTT 59.531 41.667 0.00 0.00 31.79 2.52
97 98 4.029520 ACATGCTACTCATCTGACCTTCT 58.970 43.478 0.00 0.00 31.79 2.85
98 99 4.399004 ACATGCTACTCATCTGACCTTC 57.601 45.455 0.00 0.00 31.79 3.46
99 100 7.789202 ATATACATGCTACTCATCTGACCTT 57.211 36.000 0.00 0.00 31.79 3.50
100 101 7.789202 AATATACATGCTACTCATCTGACCT 57.211 36.000 0.00 0.00 31.79 3.85
108 109 9.758651 ACGACAAATAAATATACATGCTACTCA 57.241 29.630 0.00 0.00 0.00 3.41
139 140 9.463902 AGCTCTCATGAAAACTAGTAGTACTAA 57.536 33.333 11.15 0.00 29.00 2.24
140 141 9.463902 AAGCTCTCATGAAAACTAGTAGTACTA 57.536 33.333 9.66 9.66 0.00 1.82
141 142 7.948034 AGCTCTCATGAAAACTAGTAGTACT 57.052 36.000 8.14 8.14 0.00 2.73
144 145 8.754080 ACATAAGCTCTCATGAAAACTAGTAGT 58.246 33.333 0.00 0.00 0.00 2.73
145 146 9.243637 GACATAAGCTCTCATGAAAACTAGTAG 57.756 37.037 0.00 0.00 0.00 2.57
146 147 8.749354 TGACATAAGCTCTCATGAAAACTAGTA 58.251 33.333 0.00 0.00 0.00 1.82
147 148 7.615403 TGACATAAGCTCTCATGAAAACTAGT 58.385 34.615 9.25 0.00 0.00 2.57
148 149 7.254387 GCTGACATAAGCTCTCATGAAAACTAG 60.254 40.741 9.25 0.00 40.20 2.57
149 150 6.536582 GCTGACATAAGCTCTCATGAAAACTA 59.463 38.462 9.25 0.00 40.20 2.24
150 151 5.353678 GCTGACATAAGCTCTCATGAAAACT 59.646 40.000 9.25 0.00 40.20 2.66
151 152 5.567552 GCTGACATAAGCTCTCATGAAAAC 58.432 41.667 9.25 0.00 40.20 2.43
152 153 5.808042 GCTGACATAAGCTCTCATGAAAA 57.192 39.130 9.25 0.00 40.20 2.29
163 164 1.070309 GCATACGCAGCTGACATAAGC 60.070 52.381 20.43 10.53 43.88 3.09
164 165 1.190984 CGCATACGCAGCTGACATAAG 59.809 52.381 20.43 4.12 38.40 1.73
165 166 1.208259 CGCATACGCAGCTGACATAA 58.792 50.000 20.43 0.00 38.40 1.90
166 167 0.102300 ACGCATACGCAGCTGACATA 59.898 50.000 20.43 6.17 45.53 2.29
167 168 0.102300 TACGCATACGCAGCTGACAT 59.898 50.000 20.43 3.39 45.53 3.06
168 169 0.800683 GTACGCATACGCAGCTGACA 60.801 55.000 20.43 0.61 45.53 3.58
169 170 0.525668 AGTACGCATACGCAGCTGAC 60.526 55.000 20.43 8.06 45.53 3.51
170 171 0.248498 GAGTACGCATACGCAGCTGA 60.248 55.000 20.43 0.00 45.53 4.26
171 172 1.209275 GGAGTACGCATACGCAGCTG 61.209 60.000 10.11 10.11 45.53 4.24
172 173 1.065928 GGAGTACGCATACGCAGCT 59.934 57.895 0.00 0.00 45.53 4.24
173 174 0.935366 GAGGAGTACGCATACGCAGC 60.935 60.000 0.00 0.00 45.53 5.25
174 175 0.317938 GGAGGAGTACGCATACGCAG 60.318 60.000 0.00 0.00 45.53 5.18
175 176 0.750546 AGGAGGAGTACGCATACGCA 60.751 55.000 0.00 0.00 45.53 5.24
176 177 0.040246 GAGGAGGAGTACGCATACGC 60.040 60.000 0.00 0.00 45.53 4.42
177 178 6.317163 CTCAAGAGGAGGAGTACGCATACG 62.317 54.167 0.00 0.00 41.96 3.06
178 179 2.950309 TCAAGAGGAGGAGTACGCATAC 59.050 50.000 0.00 0.00 0.00 2.39
179 180 3.215151 CTCAAGAGGAGGAGTACGCATA 58.785 50.000 0.00 0.00 40.13 3.14
180 181 2.028130 CTCAAGAGGAGGAGTACGCAT 58.972 52.381 0.00 0.00 40.13 4.73
181 182 1.464734 CTCAAGAGGAGGAGTACGCA 58.535 55.000 0.00 0.00 40.13 5.24
193 194 2.094286 CCACACTACAGAGCCTCAAGAG 60.094 54.545 0.00 0.00 0.00 2.85
194 195 1.895798 CCACACTACAGAGCCTCAAGA 59.104 52.381 0.00 0.00 0.00 3.02
195 196 1.620819 ACCACACTACAGAGCCTCAAG 59.379 52.381 0.00 0.00 0.00 3.02
196 197 1.344438 CACCACACTACAGAGCCTCAA 59.656 52.381 0.00 0.00 0.00 3.02
197 198 0.969149 CACCACACTACAGAGCCTCA 59.031 55.000 0.00 0.00 0.00 3.86
198 199 0.969894 ACACCACACTACAGAGCCTC 59.030 55.000 0.00 0.00 0.00 4.70
199 200 2.304221 TACACCACACTACAGAGCCT 57.696 50.000 0.00 0.00 0.00 4.58
200 201 3.262420 CAATACACCACACTACAGAGCC 58.738 50.000 0.00 0.00 0.00 4.70
201 202 2.673368 GCAATACACCACACTACAGAGC 59.327 50.000 0.00 0.00 0.00 4.09
202 203 3.925379 TGCAATACACCACACTACAGAG 58.075 45.455 0.00 0.00 0.00 3.35
203 204 3.576550 TCTGCAATACACCACACTACAGA 59.423 43.478 0.00 0.00 0.00 3.41
204 205 3.925379 TCTGCAATACACCACACTACAG 58.075 45.455 0.00 0.00 0.00 2.74
205 206 4.344359 TTCTGCAATACACCACACTACA 57.656 40.909 0.00 0.00 0.00 2.74
206 207 6.761242 TGATATTCTGCAATACACCACACTAC 59.239 38.462 0.00 0.00 0.00 2.73
207 208 6.883744 TGATATTCTGCAATACACCACACTA 58.116 36.000 0.00 0.00 0.00 2.74
208 209 5.744171 TGATATTCTGCAATACACCACACT 58.256 37.500 0.00 0.00 0.00 3.55
209 210 6.624352 ATGATATTCTGCAATACACCACAC 57.376 37.500 0.00 0.00 0.00 3.82
210 211 7.278875 TGTATGATATTCTGCAATACACCACA 58.721 34.615 1.86 0.00 0.00 4.17
211 212 7.728847 TGTATGATATTCTGCAATACACCAC 57.271 36.000 1.86 0.00 0.00 4.16
212 213 7.992608 ACTTGTATGATATTCTGCAATACACCA 59.007 33.333 4.95 0.00 0.00 4.17
213 214 8.285394 CACTTGTATGATATTCTGCAATACACC 58.715 37.037 4.95 0.00 0.00 4.16
214 215 8.285394 CCACTTGTATGATATTCTGCAATACAC 58.715 37.037 4.95 0.00 0.00 2.90
215 216 7.445096 CCCACTTGTATGATATTCTGCAATACA 59.555 37.037 1.86 1.86 0.00 2.29
216 217 7.661437 TCCCACTTGTATGATATTCTGCAATAC 59.339 37.037 0.00 0.00 0.00 1.89
217 218 7.661437 GTCCCACTTGTATGATATTCTGCAATA 59.339 37.037 0.00 0.00 0.00 1.90
218 219 6.488006 GTCCCACTTGTATGATATTCTGCAAT 59.512 38.462 0.00 0.00 0.00 3.56
219 220 5.822519 GTCCCACTTGTATGATATTCTGCAA 59.177 40.000 0.00 0.00 0.00 4.08
220 221 5.368145 GTCCCACTTGTATGATATTCTGCA 58.632 41.667 0.00 0.00 0.00 4.41
221 222 4.757149 GGTCCCACTTGTATGATATTCTGC 59.243 45.833 0.00 0.00 0.00 4.26
222 223 4.991056 CGGTCCCACTTGTATGATATTCTG 59.009 45.833 0.00 0.00 0.00 3.02
223 224 4.503296 GCGGTCCCACTTGTATGATATTCT 60.503 45.833 0.00 0.00 0.00 2.40
224 225 3.746492 GCGGTCCCACTTGTATGATATTC 59.254 47.826 0.00 0.00 0.00 1.75
225 226 3.496160 GGCGGTCCCACTTGTATGATATT 60.496 47.826 0.00 0.00 0.00 1.28
226 227 2.038557 GGCGGTCCCACTTGTATGATAT 59.961 50.000 0.00 0.00 0.00 1.63
227 228 1.414919 GGCGGTCCCACTTGTATGATA 59.585 52.381 0.00 0.00 0.00 2.15
228 229 0.180406 GGCGGTCCCACTTGTATGAT 59.820 55.000 0.00 0.00 0.00 2.45
229 230 1.600107 GGCGGTCCCACTTGTATGA 59.400 57.895 0.00 0.00 0.00 2.15
230 231 1.813753 CGGCGGTCCCACTTGTATG 60.814 63.158 0.00 0.00 0.00 2.39
231 232 1.956629 CTCGGCGGTCCCACTTGTAT 61.957 60.000 7.21 0.00 0.00 2.29
232 233 2.601067 TCGGCGGTCCCACTTGTA 60.601 61.111 7.21 0.00 0.00 2.41
233 234 4.003788 CTCGGCGGTCCCACTTGT 62.004 66.667 7.21 0.00 0.00 3.16
234 235 3.234630 TTCTCGGCGGTCCCACTTG 62.235 63.158 7.21 0.00 0.00 3.16
235 236 2.920912 TTCTCGGCGGTCCCACTT 60.921 61.111 7.21 0.00 0.00 3.16
236 237 2.776370 TAGTTCTCGGCGGTCCCACT 62.776 60.000 7.21 5.26 0.00 4.00
237 238 2.280823 CTAGTTCTCGGCGGTCCCAC 62.281 65.000 7.21 0.00 0.00 4.61
238 239 2.036098 TAGTTCTCGGCGGTCCCA 59.964 61.111 7.21 0.00 0.00 4.37
239 240 2.806237 CTAGTTCTCGGCGGTCCC 59.194 66.667 7.21 0.00 0.00 4.46
240 241 2.104530 GCTAGTTCTCGGCGGTCC 59.895 66.667 7.21 0.00 0.00 4.46
241 242 2.278013 CGCTAGTTCTCGGCGGTC 60.278 66.667 7.21 0.00 44.32 4.79
244 245 2.024871 CTCCGCTAGTTCTCGGCG 59.975 66.667 0.00 0.00 44.91 6.46
245 246 2.278923 GCTCCGCTAGTTCTCGGC 60.279 66.667 1.98 0.00 44.91 5.54
246 247 0.526524 CAAGCTCCGCTAGTTCTCGG 60.527 60.000 0.49 0.49 46.52 4.63
247 248 0.452184 TCAAGCTCCGCTAGTTCTCG 59.548 55.000 0.00 0.00 38.25 4.04
248 249 1.746220 TCTCAAGCTCCGCTAGTTCTC 59.254 52.381 0.00 0.00 38.25 2.87
249 250 1.474879 GTCTCAAGCTCCGCTAGTTCT 59.525 52.381 0.00 0.00 38.25 3.01
250 251 1.474879 AGTCTCAAGCTCCGCTAGTTC 59.525 52.381 0.00 0.00 38.25 3.01
251 252 1.551452 AGTCTCAAGCTCCGCTAGTT 58.449 50.000 0.00 0.00 38.25 2.24
252 253 1.551452 AAGTCTCAAGCTCCGCTAGT 58.449 50.000 0.00 0.00 38.25 2.57
253 254 2.266554 CAAAGTCTCAAGCTCCGCTAG 58.733 52.381 0.00 0.00 38.25 3.42
254 255 1.673033 GCAAAGTCTCAAGCTCCGCTA 60.673 52.381 0.00 0.00 38.25 4.26
255 256 0.952984 GCAAAGTCTCAAGCTCCGCT 60.953 55.000 0.00 0.00 42.56 5.52
256 257 0.952984 AGCAAAGTCTCAAGCTCCGC 60.953 55.000 0.00 0.00 30.05 5.54
257 258 0.795085 CAGCAAAGTCTCAAGCTCCG 59.205 55.000 0.00 0.00 34.61 4.63
258 259 1.163554 CCAGCAAAGTCTCAAGCTCC 58.836 55.000 0.00 0.00 34.61 4.70
259 260 1.163554 CCCAGCAAAGTCTCAAGCTC 58.836 55.000 0.00 0.00 34.61 4.09
260 261 0.767375 TCCCAGCAAAGTCTCAAGCT 59.233 50.000 0.00 0.00 37.95 3.74
261 262 1.609208 TTCCCAGCAAAGTCTCAAGC 58.391 50.000 0.00 0.00 0.00 4.01
262 263 3.192212 GGAATTCCCAGCAAAGTCTCAAG 59.808 47.826 14.03 0.00 34.14 3.02
263 264 3.157087 GGAATTCCCAGCAAAGTCTCAA 58.843 45.455 14.03 0.00 34.14 3.02
264 265 2.795329 GGAATTCCCAGCAAAGTCTCA 58.205 47.619 14.03 0.00 34.14 3.27
277 278 1.338136 TGAGGCCTCTCGGGAATTCC 61.338 60.000 32.28 16.74 42.79 3.01
278 279 0.761802 ATGAGGCCTCTCGGGAATTC 59.238 55.000 32.28 4.23 42.79 2.17
279 280 2.103153 TATGAGGCCTCTCGGGAATT 57.897 50.000 32.28 10.07 42.79 2.17
280 281 2.103153 TTATGAGGCCTCTCGGGAAT 57.897 50.000 32.28 18.78 42.79 3.01
281 282 1.694150 CATTATGAGGCCTCTCGGGAA 59.306 52.381 32.28 18.40 42.79 3.97
282 283 1.342074 CATTATGAGGCCTCTCGGGA 58.658 55.000 32.28 13.40 42.79 5.14
283 284 1.051812 ACATTATGAGGCCTCTCGGG 58.948 55.000 32.28 19.59 42.79 5.14
284 285 3.574396 TCTTACATTATGAGGCCTCTCGG 59.426 47.826 32.28 18.93 42.79 4.63
285 286 4.855715 TCTTACATTATGAGGCCTCTCG 57.144 45.455 32.28 17.82 42.79 4.04
286 287 6.107901 ACATCTTACATTATGAGGCCTCTC 57.892 41.667 32.28 9.89 40.36 3.20
287 288 6.506538 AACATCTTACATTATGAGGCCTCT 57.493 37.500 32.28 20.00 0.00 3.69
288 289 7.573968 AAAACATCTTACATTATGAGGCCTC 57.426 36.000 26.78 26.78 0.00 4.70
289 290 7.961326 AAAAACATCTTACATTATGAGGCCT 57.039 32.000 3.86 3.86 0.00 5.19
335 336 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
336 337 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
337 338 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
338 339 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
339 340 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
341 342 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
342 343 3.918566 TCCTCCGTCCCATAATGTAAGA 58.081 45.455 0.00 0.00 0.00 2.10
343 344 4.101119 ACTTCCTCCGTCCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
344 345 4.035112 ACTTCCTCCGTCCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
345 346 3.649843 ACTTCCTCCGTCCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
346 347 2.478292 ACTTCCTCCGTCCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
347 348 4.891992 ATACTTCCTCCGTCCCATAATG 57.108 45.455 0.00 0.00 0.00 1.90
348 349 7.383156 TTTAATACTTCCTCCGTCCCATAAT 57.617 36.000 0.00 0.00 0.00 1.28
349 350 6.811634 TTTAATACTTCCTCCGTCCCATAA 57.188 37.500 0.00 0.00 0.00 1.90
350 351 6.811634 TTTTAATACTTCCTCCGTCCCATA 57.188 37.500 0.00 0.00 0.00 2.74
351 352 5.703730 TTTTAATACTTCCTCCGTCCCAT 57.296 39.130 0.00 0.00 0.00 4.00
352 353 5.013391 AGTTTTTAATACTTCCTCCGTCCCA 59.987 40.000 0.00 0.00 0.00 4.37
353 354 5.353400 CAGTTTTTAATACTTCCTCCGTCCC 59.647 44.000 0.00 0.00 0.00 4.46
354 355 5.353400 CCAGTTTTTAATACTTCCTCCGTCC 59.647 44.000 0.00 0.00 0.00 4.79
355 356 5.353400 CCCAGTTTTTAATACTTCCTCCGTC 59.647 44.000 0.00 0.00 0.00 4.79
356 357 5.250982 CCCAGTTTTTAATACTTCCTCCGT 58.749 41.667 0.00 0.00 0.00 4.69
357 358 4.095932 GCCCAGTTTTTAATACTTCCTCCG 59.904 45.833 0.00 0.00 0.00 4.63
358 359 4.095932 CGCCCAGTTTTTAATACTTCCTCC 59.904 45.833 0.00 0.00 0.00 4.30
359 360 4.939439 TCGCCCAGTTTTTAATACTTCCTC 59.061 41.667 0.00 0.00 0.00 3.71
360 361 4.913784 TCGCCCAGTTTTTAATACTTCCT 58.086 39.130 0.00 0.00 0.00 3.36
361 362 4.939439 TCTCGCCCAGTTTTTAATACTTCC 59.061 41.667 0.00 0.00 0.00 3.46
362 363 5.642491 ACTCTCGCCCAGTTTTTAATACTTC 59.358 40.000 0.00 0.00 0.00 3.01
363 364 5.411669 CACTCTCGCCCAGTTTTTAATACTT 59.588 40.000 0.00 0.00 0.00 2.24
364 365 4.935808 CACTCTCGCCCAGTTTTTAATACT 59.064 41.667 0.00 0.00 0.00 2.12
365 366 4.694037 ACACTCTCGCCCAGTTTTTAATAC 59.306 41.667 0.00 0.00 0.00 1.89
366 367 4.901868 ACACTCTCGCCCAGTTTTTAATA 58.098 39.130 0.00 0.00 0.00 0.98
367 368 3.751518 ACACTCTCGCCCAGTTTTTAAT 58.248 40.909 0.00 0.00 0.00 1.40
368 369 3.202829 ACACTCTCGCCCAGTTTTTAA 57.797 42.857 0.00 0.00 0.00 1.52
369 370 2.922740 ACACTCTCGCCCAGTTTTTA 57.077 45.000 0.00 0.00 0.00 1.52
370 371 2.490991 GTACACTCTCGCCCAGTTTTT 58.509 47.619 0.00 0.00 0.00 1.94
376 377 0.606604 GAAAGGTACACTCTCGCCCA 59.393 55.000 0.00 0.00 0.00 5.36
378 379 0.243095 ACGAAAGGTACACTCTCGCC 59.757 55.000 6.91 0.00 0.00 5.54
380 381 1.465354 CCGACGAAAGGTACACTCTCG 60.465 57.143 0.00 5.79 0.00 4.04
419 445 5.541910 CATTGTCTACGAATCTCACAAACG 58.458 41.667 0.00 0.00 31.04 3.60
557 583 0.677288 CAAGTGGACGTGGAGGTACA 59.323 55.000 0.00 0.00 0.00 2.90
586 612 3.481024 CCGGCGTTTCGTTACGGG 61.481 66.667 6.01 0.00 41.65 5.28
757 783 2.186903 CGGTTGGGGGATCTCACG 59.813 66.667 0.00 0.00 0.00 4.35
758 784 1.221021 GTCGGTTGGGGGATCTCAC 59.779 63.158 0.00 0.00 0.00 3.51
759 785 2.355986 CGTCGGTTGGGGGATCTCA 61.356 63.158 0.00 0.00 0.00 3.27
760 786 2.499685 CGTCGGTTGGGGGATCTC 59.500 66.667 0.00 0.00 0.00 2.75
901 937 6.199393 CGATTCGAGGAATGAAATTAAACCC 58.801 40.000 0.00 0.00 36.07 4.11
959 996 4.696479 AGAATAACAATCCGATCCTGCT 57.304 40.909 0.00 0.00 0.00 4.24
960 997 6.428159 ACAATAGAATAACAATCCGATCCTGC 59.572 38.462 0.00 0.00 0.00 4.85
961 998 7.969536 ACAATAGAATAACAATCCGATCCTG 57.030 36.000 0.00 0.00 0.00 3.86
962 999 7.993183 ACAACAATAGAATAACAATCCGATCCT 59.007 33.333 0.00 0.00 0.00 3.24
963 1000 8.154649 ACAACAATAGAATAACAATCCGATCC 57.845 34.615 0.00 0.00 0.00 3.36
964 1001 8.283291 GGACAACAATAGAATAACAATCCGATC 58.717 37.037 0.00 0.00 0.00 3.69
965 1002 7.042051 CGGACAACAATAGAATAACAATCCGAT 60.042 37.037 0.00 0.00 45.39 4.18
966 1003 6.256975 CGGACAACAATAGAATAACAATCCGA 59.743 38.462 0.00 0.00 45.39 4.55
967 1004 6.418956 CGGACAACAATAGAATAACAATCCG 58.581 40.000 0.00 0.00 38.36 4.18
968 1005 6.199393 GCGGACAACAATAGAATAACAATCC 58.801 40.000 0.00 0.00 0.00 3.01
969 1006 5.901884 CGCGGACAACAATAGAATAACAATC 59.098 40.000 0.00 0.00 0.00 2.67
970 1007 5.220777 CCGCGGACAACAATAGAATAACAAT 60.221 40.000 24.07 0.00 0.00 2.71
971 1008 4.093703 CCGCGGACAACAATAGAATAACAA 59.906 41.667 24.07 0.00 0.00 2.83
972 1009 3.619483 CCGCGGACAACAATAGAATAACA 59.381 43.478 24.07 0.00 0.00 2.41
973 1010 3.545426 GCCGCGGACAACAATAGAATAAC 60.545 47.826 33.48 0.00 0.00 1.89
974 1011 2.610374 GCCGCGGACAACAATAGAATAA 59.390 45.455 33.48 0.00 0.00 1.40
975 1012 2.206750 GCCGCGGACAACAATAGAATA 58.793 47.619 33.48 0.00 0.00 1.75
976 1013 1.014352 GCCGCGGACAACAATAGAAT 58.986 50.000 33.48 0.00 0.00 2.40
977 1014 1.355796 CGCCGCGGACAACAATAGAA 61.356 55.000 33.48 0.00 0.00 2.10
978 1015 1.807981 CGCCGCGGACAACAATAGA 60.808 57.895 33.48 0.00 0.00 1.98
979 1016 2.701006 CGCCGCGGACAACAATAG 59.299 61.111 33.48 3.43 0.00 1.73
1057 1117 2.827190 CATGGCTGCCGCTGTGAT 60.827 61.111 14.98 0.00 36.09 3.06
1086 1146 1.106285 GCAGGACAAATAAGCAGGGG 58.894 55.000 0.00 0.00 0.00 4.79
1095 1157 3.434319 CGCGGCAGCAGGACAAAT 61.434 61.111 10.08 0.00 45.49 2.32
1165 1227 2.937149 GCCATTAGAGGAACGGAGAAAC 59.063 50.000 0.00 0.00 0.00 2.78
1167 1229 2.168521 CTGCCATTAGAGGAACGGAGAA 59.831 50.000 0.00 0.00 0.00 2.87
1169 1231 1.202580 CCTGCCATTAGAGGAACGGAG 60.203 57.143 0.00 0.00 0.00 4.63
1230 1292 1.296056 ACGTACCTGCGAATTGGTGC 61.296 55.000 0.00 0.00 37.74 5.01
1251 1313 6.253758 ACCATAAATAGCCCCTTAATTAGCC 58.746 40.000 0.00 0.00 0.00 3.93
1553 1623 2.664851 CCTTGGCGAGCACGAACA 60.665 61.111 8.01 2.21 42.66 3.18
1836 1912 2.124403 GCAGCCATCCCTGACAGG 60.124 66.667 15.15 15.15 34.77 4.00
2117 5246 8.447833 TCACTTGTGTTTAAGTAGAAGTTTGTG 58.552 33.333 0.46 0.00 38.78 3.33
2189 5324 7.602644 TGCGAATTTTAAGTTGTCTGATCTAGT 59.397 33.333 0.00 0.00 0.00 2.57
2238 5723 7.015877 GTGTTTACAAAGCTACTGCATAGAAC 58.984 38.462 7.19 2.87 42.74 3.01
2378 5917 8.709386 ATTTCTGACACACATACTTGATACTC 57.291 34.615 0.00 0.00 0.00 2.59
2456 5995 5.863560 TTGAAAGACAAGCTTGGGACAAGTA 60.864 40.000 29.18 6.89 37.48 2.24
2579 6135 8.004801 TCCCCTAAAATCTGTTTTTCTCTTTCT 58.995 33.333 0.03 0.00 38.47 2.52
2580 6136 8.178313 TCCCCTAAAATCTGTTTTTCTCTTTC 57.822 34.615 0.03 0.00 38.47 2.62
2581 6137 8.547481 TTCCCCTAAAATCTGTTTTTCTCTTT 57.453 30.769 0.03 0.00 38.47 2.52
2582 6138 8.004801 TCTTCCCCTAAAATCTGTTTTTCTCTT 58.995 33.333 0.03 0.00 38.47 2.85
2594 6150 5.298527 CCCGTAAACATCTTCCCCTAAAATC 59.701 44.000 0.00 0.00 0.00 2.17
2671 6227 9.740710 AATAGCTCCTGTAAAAGTGATTTTACT 57.259 29.630 18.97 5.92 43.89 2.24
2701 6257 4.399004 AACATACAGGACAGAGAGCATC 57.601 45.455 0.00 0.00 0.00 3.91
2702 6258 4.223700 TCAAACATACAGGACAGAGAGCAT 59.776 41.667 0.00 0.00 0.00 3.79
2707 6263 5.636965 CAGAACTCAAACATACAGGACAGAG 59.363 44.000 0.00 0.00 0.00 3.35
2708 6264 5.511373 CCAGAACTCAAACATACAGGACAGA 60.511 44.000 0.00 0.00 0.00 3.41
2888 6467 2.900546 GAGATACAATCCCCGTCTCCAT 59.099 50.000 0.00 0.00 31.41 3.41
2895 6474 2.037251 ACCGAATGAGATACAATCCCCG 59.963 50.000 0.00 0.00 0.00 5.73
2920 6499 1.541310 CGCCCAAGGATAGCCCGATA 61.541 60.000 0.00 0.00 40.87 2.92
3062 6817 2.299297 CCGAGTGAGGAACTGTTAACCT 59.701 50.000 2.48 0.74 41.55 3.50
3243 7001 2.102578 GGGCTGTTGGCATTGTAGAAT 58.897 47.619 0.00 0.00 44.01 2.40
3316 7074 7.175347 TGAGATCCACTAATGCCATATAGAC 57.825 40.000 0.00 0.00 0.00 2.59
3486 7244 0.458669 CATTGATCACCAAGCAGCCC 59.541 55.000 0.00 0.00 38.31 5.19
3497 7255 3.925379 ACAAGTCGTAGTGCATTGATCA 58.075 40.909 0.00 0.00 0.00 2.92
3532 7290 4.362677 AGCCTCCCATCTTACTCAGTTAA 58.637 43.478 0.00 0.00 0.00 2.01
3703 7463 0.606673 GCAAAGACTGGTGGGACTCC 60.607 60.000 0.00 0.00 43.26 3.85
3788 7548 3.062763 CAGGAGATCCGCATTGATGTAC 58.937 50.000 0.00 0.00 42.08 2.90
3799 7559 0.457851 AGCGACTTTCAGGAGATCCG 59.542 55.000 0.00 0.00 42.08 4.18
3806 7566 2.213499 ACAGTTGAAGCGACTTTCAGG 58.787 47.619 0.00 0.00 38.25 3.86
3939 7699 9.922305 GATTGGTATTTAAGTTGAGAAAGATCG 57.078 33.333 0.00 0.00 0.00 3.69
4092 7853 8.627403 CAGGCATAGATGAATGAACTGTATTTT 58.373 33.333 0.00 0.00 32.88 1.82
4205 7972 3.010584 AGCATGGGTTACTGGAACTTGAT 59.989 43.478 2.26 0.00 38.21 2.57
4330 8100 5.711506 TGTAATGCCATCAACAGAGAACATT 59.288 36.000 0.00 0.00 0.00 2.71
4331 8101 5.124457 GTGTAATGCCATCAACAGAGAACAT 59.876 40.000 0.00 0.00 0.00 2.71
4332 8102 4.455533 GTGTAATGCCATCAACAGAGAACA 59.544 41.667 0.00 0.00 0.00 3.18
4333 8103 4.455533 TGTGTAATGCCATCAACAGAGAAC 59.544 41.667 0.00 0.00 0.00 3.01
4334 8104 4.650734 TGTGTAATGCCATCAACAGAGAA 58.349 39.130 0.00 0.00 0.00 2.87
4354 8125 8.443160 CAAATCTTACATTTGTCGACAGTATGT 58.557 33.333 32.50 32.50 42.00 2.29
4380 8151 6.809196 CACTCTAGGTAAAACACTCAGATCAC 59.191 42.308 0.00 0.00 0.00 3.06
4390 8161 7.120579 CCATACAAATGCACTCTAGGTAAAACA 59.879 37.037 0.00 0.00 0.00 2.83
4396 8167 4.844349 ACCATACAAATGCACTCTAGGT 57.156 40.909 0.00 0.00 0.00 3.08
4409 8180 3.420893 CCTCTGCTGGAAAACCATACAA 58.579 45.455 0.00 0.00 0.00 2.41
4417 8188 2.468015 AGAGGCCTCTGCTGGAAAA 58.532 52.632 34.74 0.00 38.75 2.29
4429 8200 2.923121 TCATATGTTTGCTCAGAGGCC 58.077 47.619 1.90 0.00 0.00 5.19
4430 8201 3.501445 GGATCATATGTTTGCTCAGAGGC 59.499 47.826 1.90 0.00 0.00 4.70
4434 8205 3.252701 GCCTGGATCATATGTTTGCTCAG 59.747 47.826 1.90 4.04 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.