Multiple sequence alignment - TraesCS7A01G360400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G360400 chr7A 100.000 3371 0 0 1 3371 533994324 533997694 0.000000e+00 6226
1 TraesCS7A01G360400 chr7D 90.831 1974 102 43 646 2571 465914783 465912841 0.000000e+00 2569
2 TraesCS7A01G360400 chr7D 89.124 708 32 24 2686 3352 465892621 465891918 0.000000e+00 839
3 TraesCS7A01G360400 chr7D 80.412 582 96 14 35 603 465921306 465920730 8.640000e-116 427
4 TraesCS7A01G360400 chr7B 89.377 2071 125 43 649 2669 490433567 490431542 0.000000e+00 2518
5 TraesCS7A01G360400 chr7B 88.859 745 30 17 2668 3371 490431614 490430882 0.000000e+00 867
6 TraesCS7A01G360400 chr6D 84.211 190 23 7 1137 1321 48719561 48719748 9.610000e-41 178
7 TraesCS7A01G360400 chr6A 83.938 193 24 7 1137 1324 65846881 65846691 9.610000e-41 178
8 TraesCS7A01G360400 chr4D 83.069 189 30 2 1132 1319 506340131 506339944 1.610000e-38 171
9 TraesCS7A01G360400 chr5A 82.564 195 30 4 1127 1319 704342961 704343153 5.780000e-38 169
10 TraesCS7A01G360400 chr4B 82.540 189 31 2 1132 1319 662470994 662470807 7.480000e-37 165
11 TraesCS7A01G360400 chrUn 81.683 202 32 5 1120 1319 109029196 109028998 2.690000e-36 163
12 TraesCS7A01G360400 chr3B 81.053 190 34 2 1131 1319 799983088 799982900 2.100000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G360400 chr7A 533994324 533997694 3370 False 6226.0 6226 100.000 1 3371 1 chr7A.!!$F1 3370
1 TraesCS7A01G360400 chr7D 465912841 465914783 1942 True 2569.0 2569 90.831 646 2571 1 chr7D.!!$R2 1925
2 TraesCS7A01G360400 chr7D 465891918 465892621 703 True 839.0 839 89.124 2686 3352 1 chr7D.!!$R1 666
3 TraesCS7A01G360400 chr7D 465920730 465921306 576 True 427.0 427 80.412 35 603 1 chr7D.!!$R3 568
4 TraesCS7A01G360400 chr7B 490430882 490433567 2685 True 1692.5 2518 89.118 649 3371 2 chr7B.!!$R1 2722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 485 0.035056 AAGACCGGGCATCCTCAAAG 60.035 55.0 11.69 0.0 0.0 2.77 F
2031 2063 0.034380 TAGACGTGGAGGTGGAGGAG 60.034 60.0 0.00 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2189 0.035317 AGTGAATTGTGCCGAGCTGA 59.965 50.0 0.00 0.00 0.00 4.26 R
2847 2922 0.034337 AAGCTTCTACCGAACGGCAA 59.966 50.0 13.32 3.33 39.32 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.834911 GACCGGGTCCATGGTTTT 57.165 55.556 16.55 0.00 38.99 2.43
18 19 2.563297 GACCGGGTCCATGGTTTTC 58.437 57.895 16.55 1.23 38.99 2.29
19 20 1.302993 ACCGGGTCCATGGTTTTCG 60.303 57.895 12.58 11.43 33.81 3.46
20 21 2.043980 CCGGGTCCATGGTTTTCGG 61.044 63.158 12.58 16.24 0.00 4.30
21 22 2.696759 CGGGTCCATGGTTTTCGGC 61.697 63.158 12.58 0.00 0.00 5.54
22 23 1.605165 GGGTCCATGGTTTTCGGCA 60.605 57.895 12.58 0.00 0.00 5.69
23 24 1.182385 GGGTCCATGGTTTTCGGCAA 61.182 55.000 12.58 0.00 0.00 4.52
24 25 0.243636 GGTCCATGGTTTTCGGCAAG 59.756 55.000 12.58 0.00 0.00 4.01
25 26 0.958822 GTCCATGGTTTTCGGCAAGT 59.041 50.000 12.58 0.00 0.00 3.16
26 27 0.958091 TCCATGGTTTTCGGCAAGTG 59.042 50.000 12.58 0.00 0.00 3.16
27 28 0.038343 CCATGGTTTTCGGCAAGTGG 60.038 55.000 2.57 0.00 0.00 4.00
28 29 0.673437 CATGGTTTTCGGCAAGTGGT 59.327 50.000 0.00 0.00 0.00 4.16
29 30 1.068434 CATGGTTTTCGGCAAGTGGTT 59.932 47.619 0.00 0.00 0.00 3.67
30 31 0.457851 TGGTTTTCGGCAAGTGGTTG 59.542 50.000 0.00 0.00 36.67 3.77
31 32 0.249280 GGTTTTCGGCAAGTGGTTGG 60.249 55.000 0.00 0.00 33.87 3.77
39 40 1.372004 CAAGTGGTTGGCACATGCG 60.372 57.895 0.00 0.00 43.26 4.73
41 42 0.895100 AAGTGGTTGGCACATGCGAT 60.895 50.000 0.00 0.00 43.26 4.58
44 45 0.322008 TGGTTGGCACATGCGATACA 60.322 50.000 0.00 0.00 43.26 2.29
52 53 4.791487 GGCACATGCGATACAATCCTTGT 61.791 47.826 0.00 0.00 44.12 3.16
54 55 4.675146 GCACATGCGATACAATCCTTGTTT 60.675 41.667 0.00 0.00 42.22 2.83
55 56 5.030295 CACATGCGATACAATCCTTGTTTC 58.970 41.667 0.00 0.00 42.22 2.78
57 58 5.065218 ACATGCGATACAATCCTTGTTTCTC 59.935 40.000 0.00 0.00 42.22 2.87
58 59 4.832248 TGCGATACAATCCTTGTTTCTCT 58.168 39.130 0.00 0.00 42.22 3.10
60 61 5.351465 TGCGATACAATCCTTGTTTCTCTTC 59.649 40.000 0.00 0.00 42.22 2.87
64 66 4.911390 ACAATCCTTGTTTCTCTTCGGAT 58.089 39.130 0.00 0.00 42.22 4.18
65 67 6.049955 ACAATCCTTGTTTCTCTTCGGATA 57.950 37.500 0.00 0.00 42.22 2.59
72 74 6.074088 CCTTGTTTCTCTTCGGATAATGATCG 60.074 42.308 0.00 0.00 32.28 3.69
73 75 6.144078 TGTTTCTCTTCGGATAATGATCGA 57.856 37.500 0.00 0.00 32.28 3.59
77 79 4.827835 TCTCTTCGGATAATGATCGAAGGT 59.172 41.667 19.75 0.00 39.95 3.50
79 81 3.936372 TCGGATAATGATCGAAGGTCC 57.064 47.619 0.00 0.00 32.28 4.46
101 103 8.912658 GGTCCGAAAGAAAATTCTGAATAAAAC 58.087 33.333 2.85 0.00 37.65 2.43
104 107 8.417176 CCGAAAGAAAATTCTGAATAAAACGTG 58.583 33.333 2.85 0.00 37.65 4.49
111 114 6.817765 ATTCTGAATAAAACGTGTGTGGAT 57.182 33.333 0.00 0.00 0.00 3.41
112 115 6.627395 TTCTGAATAAAACGTGTGTGGATT 57.373 33.333 0.00 0.00 0.00 3.01
118 121 1.878953 AACGTGTGTGGATTGAGGAC 58.121 50.000 0.00 0.00 0.00 3.85
120 123 1.626654 CGTGTGTGGATTGAGGACGC 61.627 60.000 0.00 0.00 0.00 5.19
130 133 3.440173 GGATTGAGGACGCTGAAATTCAA 59.560 43.478 0.00 0.00 0.00 2.69
135 138 1.806542 GGACGCTGAAATTCAAGCTCA 59.193 47.619 12.84 0.00 0.00 4.26
144 147 5.195185 TGAAATTCAAGCTCATAGATGGCA 58.805 37.500 0.00 0.00 0.00 4.92
173 176 4.081972 ACGAGCATATCATATGGACCAGAC 60.082 45.833 6.79 0.00 0.00 3.51
174 177 4.159321 CGAGCATATCATATGGACCAGACT 59.841 45.833 6.79 0.00 0.00 3.24
179 182 4.952071 ATCATATGGACCAGACTGTCAG 57.048 45.455 10.88 1.42 36.97 3.51
180 183 3.033909 TCATATGGACCAGACTGTCAGG 58.966 50.000 16.69 16.69 36.97 3.86
184 187 1.587054 GACCAGACTGTCAGGACCG 59.413 63.158 23.95 0.00 35.29 4.79
199 202 3.256136 CAGGACCGTCTCAGTAAACTCTT 59.744 47.826 0.00 0.00 0.00 2.85
205 208 5.475909 ACCGTCTCAGTAAACTCTTCATGTA 59.524 40.000 0.00 0.00 0.00 2.29
206 209 6.153000 ACCGTCTCAGTAAACTCTTCATGTAT 59.847 38.462 0.00 0.00 0.00 2.29
207 210 7.338703 ACCGTCTCAGTAAACTCTTCATGTATA 59.661 37.037 0.00 0.00 0.00 1.47
208 211 7.858382 CCGTCTCAGTAAACTCTTCATGTATAG 59.142 40.741 0.00 0.00 0.00 1.31
209 212 8.399425 CGTCTCAGTAAACTCTTCATGTATAGT 58.601 37.037 0.00 0.00 0.00 2.12
210 213 9.509855 GTCTCAGTAAACTCTTCATGTATAGTG 57.490 37.037 0.00 0.00 0.00 2.74
211 214 9.462606 TCTCAGTAAACTCTTCATGTATAGTGA 57.537 33.333 0.00 0.00 0.00 3.41
251 255 2.429971 TCATTGCTTTGCTTGTGGTTCA 59.570 40.909 0.00 0.00 0.00 3.18
257 261 5.609423 TGCTTTGCTTGTGGTTCAATATTT 58.391 33.333 0.00 0.00 35.35 1.40
258 262 5.466058 TGCTTTGCTTGTGGTTCAATATTTG 59.534 36.000 0.00 0.00 35.35 2.32
259 263 5.466393 GCTTTGCTTGTGGTTCAATATTTGT 59.534 36.000 0.00 0.00 35.35 2.83
266 270 8.190122 GCTTGTGGTTCAATATTTGTGATCATA 58.810 33.333 0.00 0.00 35.35 2.15
283 287 8.219868 TGTGATCATACTTTCCACCATATCATT 58.780 33.333 0.00 0.00 0.00 2.57
287 291 8.224389 TCATACTTTCCACCATATCATTTGTG 57.776 34.615 0.00 0.00 0.00 3.33
289 293 4.711355 ACTTTCCACCATATCATTTGTGGG 59.289 41.667 7.60 0.00 46.54 4.61
290 294 2.665165 TCCACCATATCATTTGTGGGC 58.335 47.619 7.60 0.00 46.54 5.36
291 295 2.024560 TCCACCATATCATTTGTGGGCA 60.025 45.455 7.60 0.00 46.54 5.36
320 324 0.385751 CGCACCGAGTCATAGGACAT 59.614 55.000 10.58 0.00 46.80 3.06
332 336 6.219473 AGTCATAGGACATTCAATAAGAGCG 58.781 40.000 10.58 0.00 46.80 5.03
337 341 1.665679 ACATTCAATAAGAGCGTGGCG 59.334 47.619 0.00 0.00 0.00 5.69
338 342 1.665679 CATTCAATAAGAGCGTGGCGT 59.334 47.619 0.00 0.00 0.00 5.68
340 344 0.800683 TCAATAAGAGCGTGGCGTCG 60.801 55.000 0.00 0.00 0.00 5.12
344 348 1.978712 TAAGAGCGTGGCGTCGAGAG 61.979 60.000 0.00 0.00 0.00 3.20
353 357 2.487428 CGTCGAGAGTCTGGCCTG 59.513 66.667 3.32 2.92 0.00 4.85
356 360 3.385384 CGAGAGTCTGGCCTGCCA 61.385 66.667 10.98 10.98 45.02 4.92
364 368 4.720902 TGGCCTGCCACACATCGG 62.721 66.667 6.80 0.00 41.89 4.18
371 375 3.199551 CCACACATCGGGCATTGG 58.800 61.111 0.00 0.00 0.00 3.16
372 376 2.417257 CCACACATCGGGCATTGGG 61.417 63.158 0.00 0.00 0.00 4.12
373 377 1.378382 CACACATCGGGCATTGGGA 60.378 57.895 0.00 0.00 0.00 4.37
374 378 1.077501 ACACATCGGGCATTGGGAG 60.078 57.895 0.00 0.00 0.00 4.30
375 379 1.825191 CACATCGGGCATTGGGAGG 60.825 63.158 0.00 0.00 0.00 4.30
376 380 2.308722 ACATCGGGCATTGGGAGGT 61.309 57.895 0.00 0.00 0.00 3.85
377 381 0.986019 ACATCGGGCATTGGGAGGTA 60.986 55.000 0.00 0.00 0.00 3.08
379 383 0.694444 ATCGGGCATTGGGAGGTAGT 60.694 55.000 0.00 0.00 0.00 2.73
380 384 1.146263 CGGGCATTGGGAGGTAGTC 59.854 63.158 0.00 0.00 0.00 2.59
382 386 1.523938 GGCATTGGGAGGTAGTCGC 60.524 63.158 0.00 0.00 38.63 5.19
383 387 1.523938 GCATTGGGAGGTAGTCGCC 60.524 63.158 0.00 0.00 37.31 5.54
384 388 1.904771 CATTGGGAGGTAGTCGCCA 59.095 57.895 0.00 0.00 37.03 5.69
385 389 0.469917 CATTGGGAGGTAGTCGCCAT 59.530 55.000 0.00 0.00 37.03 4.40
386 390 0.469917 ATTGGGAGGTAGTCGCCATG 59.530 55.000 0.00 0.00 37.03 3.66
387 391 0.907704 TTGGGAGGTAGTCGCCATGT 60.908 55.000 0.00 0.00 37.03 3.21
388 392 0.907704 TGGGAGGTAGTCGCCATGTT 60.908 55.000 0.00 0.00 37.03 2.71
389 393 0.179081 GGGAGGTAGTCGCCATGTTC 60.179 60.000 0.00 0.00 37.03 3.18
390 394 0.535335 GGAGGTAGTCGCCATGTTCA 59.465 55.000 0.00 0.00 35.24 3.18
395 399 2.616960 GTAGTCGCCATGTTCATGTGA 58.383 47.619 11.13 6.49 0.00 3.58
406 410 5.649395 CCATGTTCATGTGACTTAGGACATT 59.351 40.000 11.13 0.00 30.14 2.71
411 415 8.154203 TGTTCATGTGACTTAGGACATTAAAGA 58.846 33.333 0.00 0.00 30.14 2.52
413 417 9.567776 TTCATGTGACTTAGGACATTAAAGAAA 57.432 29.630 0.00 0.00 30.14 2.52
421 425 7.883833 ACTTAGGACATTAAAGAAAGGAAGACC 59.116 37.037 0.00 0.00 0.00 3.85
422 426 5.571285 AGGACATTAAAGAAAGGAAGACCC 58.429 41.667 0.00 0.00 36.73 4.46
431 435 1.920835 AGGAAGACCCTGGTGAGCC 60.921 63.158 0.00 0.00 45.61 4.70
435 439 2.358737 GACCCTGGTGAGCCAACG 60.359 66.667 0.00 0.00 45.51 4.10
439 447 1.541310 CCCTGGTGAGCCAACGTAGA 61.541 60.000 0.00 0.00 45.51 2.59
450 458 2.061028 CCAACGTAGACAAACCCGTAC 58.939 52.381 0.00 0.00 32.49 3.67
452 460 0.603065 ACGTAGACAAACCCGTACCC 59.397 55.000 0.00 0.00 0.00 3.69
453 461 0.602562 CGTAGACAAACCCGTACCCA 59.397 55.000 0.00 0.00 0.00 4.51
454 462 1.000731 CGTAGACAAACCCGTACCCAA 59.999 52.381 0.00 0.00 0.00 4.12
457 469 1.770061 AGACAAACCCGTACCCAAAGA 59.230 47.619 0.00 0.00 0.00 2.52
468 480 2.677228 CCAAAGACCGGGCATCCT 59.323 61.111 11.69 0.00 0.00 3.24
473 485 0.035056 AAGACCGGGCATCCTCAAAG 60.035 55.000 11.69 0.00 0.00 2.77
485 497 4.202090 GCATCCTCAAAGATTCACCCAATC 60.202 45.833 0.00 0.00 41.37 2.67
491 503 0.537188 AGATTCACCCAATCGCGAGT 59.463 50.000 16.66 9.86 45.20 4.18
499 511 0.374758 CCAATCGCGAGTTGTGGATG 59.625 55.000 16.66 0.00 31.90 3.51
502 514 0.459899 ATCGCGAGTTGTGGATGCTA 59.540 50.000 16.66 0.00 0.00 3.49
515 527 2.682856 TGGATGCTAAATTTGACGAGCC 59.317 45.455 7.94 0.00 33.87 4.70
518 530 1.084289 GCTAAATTTGACGAGCCGGT 58.916 50.000 1.90 0.00 0.00 5.28
530 542 2.364324 ACGAGCCGGTTGTGTGATATAT 59.636 45.455 1.90 0.00 0.00 0.86
534 546 3.135712 AGCCGGTTGTGTGATATATCCAA 59.864 43.478 10.25 4.76 0.00 3.53
537 549 5.364778 CCGGTTGTGTGATATATCCAAAGA 58.635 41.667 10.25 0.00 0.00 2.52
562 574 4.070009 GGGTCTTTCTTTGTATGTTCGGT 58.930 43.478 0.00 0.00 0.00 4.69
564 576 5.878669 GGGTCTTTCTTTGTATGTTCGGTAT 59.121 40.000 0.00 0.00 0.00 2.73
625 638 8.954950 TTTAGGCAAGAAAAACATTCATTTGA 57.045 26.923 0.00 0.00 0.00 2.69
626 639 6.849588 AGGCAAGAAAAACATTCATTTGAC 57.150 33.333 0.00 0.00 0.00 3.18
627 640 6.347696 AGGCAAGAAAAACATTCATTTGACA 58.652 32.000 0.00 0.00 0.00 3.58
628 641 6.480981 AGGCAAGAAAAACATTCATTTGACAG 59.519 34.615 0.00 0.00 0.00 3.51
629 642 6.258507 GGCAAGAAAAACATTCATTTGACAGT 59.741 34.615 0.00 0.00 0.00 3.55
630 643 7.437862 GGCAAGAAAAACATTCATTTGACAGTA 59.562 33.333 0.00 0.00 0.00 2.74
631 644 8.816144 GCAAGAAAAACATTCATTTGACAGTAA 58.184 29.630 0.00 0.00 0.00 2.24
638 651 9.868277 AAACATTCATTTGACAGTAAAACTTCA 57.132 25.926 0.00 0.00 0.00 3.02
639 652 9.868277 AACATTCATTTGACAGTAAAACTTCAA 57.132 25.926 0.00 0.00 0.00 2.69
640 653 9.301153 ACATTCATTTGACAGTAAAACTTCAAC 57.699 29.630 0.00 0.00 30.69 3.18
641 654 9.299963 CATTCATTTGACAGTAAAACTTCAACA 57.700 29.630 0.00 0.00 30.69 3.33
642 655 9.868277 ATTCATTTGACAGTAAAACTTCAACAA 57.132 25.926 0.00 0.00 30.69 2.83
643 656 8.909708 TCATTTGACAGTAAAACTTCAACAAG 57.090 30.769 0.00 0.00 30.69 3.16
644 657 7.973388 TCATTTGACAGTAAAACTTCAACAAGG 59.027 33.333 0.00 0.00 33.37 3.61
662 675 5.353986 ACAAGGTATGATATATCTGGGCCT 58.646 41.667 13.79 11.95 0.00 5.19
838 855 6.619801 AAGAAAATATCCGCCAATAGACAC 57.380 37.500 0.00 0.00 0.00 3.67
839 856 5.680619 AGAAAATATCCGCCAATAGACACA 58.319 37.500 0.00 0.00 0.00 3.72
840 857 5.527582 AGAAAATATCCGCCAATAGACACAC 59.472 40.000 0.00 0.00 0.00 3.82
841 858 4.415881 AATATCCGCCAATAGACACACA 57.584 40.909 0.00 0.00 0.00 3.72
855 872 3.054802 AGACACACAATTCATCCCCTCTC 60.055 47.826 0.00 0.00 0.00 3.20
929 946 4.394712 ACTCCGCTCCCGCCAAAG 62.395 66.667 0.00 0.00 0.00 2.77
944 961 2.775890 CCAAAGCAGACATCACTCACT 58.224 47.619 0.00 0.00 0.00 3.41
945 962 2.740981 CCAAAGCAGACATCACTCACTC 59.259 50.000 0.00 0.00 0.00 3.51
951 968 1.201181 AGACATCACTCACTCACGAGC 59.799 52.381 0.00 0.00 36.42 5.03
952 969 0.109551 ACATCACTCACTCACGAGCG 60.110 55.000 0.00 0.00 36.42 5.03
953 970 0.799917 CATCACTCACTCACGAGCGG 60.800 60.000 0.00 0.00 36.42 5.52
954 971 2.549611 ATCACTCACTCACGAGCGGC 62.550 60.000 0.00 0.00 36.42 6.53
973 990 1.555477 CCAACCAAACGAACACTTGC 58.445 50.000 0.00 0.00 0.00 4.01
974 991 1.135257 CCAACCAAACGAACACTTGCA 60.135 47.619 0.00 0.00 0.00 4.08
975 992 1.917303 CAACCAAACGAACACTTGCAC 59.083 47.619 0.00 0.00 0.00 4.57
976 993 0.098025 ACCAAACGAACACTTGCACG 59.902 50.000 0.00 0.00 0.00 5.34
977 994 0.591236 CCAAACGAACACTTGCACGG 60.591 55.000 0.00 0.00 0.00 4.94
978 995 0.591236 CAAACGAACACTTGCACGGG 60.591 55.000 0.00 0.00 0.00 5.28
979 996 2.331019 AAACGAACACTTGCACGGGC 62.331 55.000 0.34 0.34 41.68 6.13
980 997 2.972505 CGAACACTTGCACGGGCT 60.973 61.111 12.74 0.00 41.91 5.19
981 998 2.639286 GAACACTTGCACGGGCTG 59.361 61.111 12.74 2.82 41.91 4.85
990 1007 4.988598 CACGGGCTGCACTTCGGT 62.989 66.667 0.00 0.00 0.00 4.69
991 1008 4.681978 ACGGGCTGCACTTCGGTC 62.682 66.667 0.00 0.00 0.00 4.79
992 1009 4.680237 CGGGCTGCACTTCGGTCA 62.680 66.667 0.00 0.00 0.00 4.02
993 1010 2.743928 GGGCTGCACTTCGGTCAG 60.744 66.667 0.50 0.00 0.00 3.51
994 1011 2.343758 GGCTGCACTTCGGTCAGA 59.656 61.111 0.50 0.00 0.00 3.27
995 1012 1.301716 GGCTGCACTTCGGTCAGAA 60.302 57.895 0.50 0.00 37.31 3.02
1233 1253 1.003355 CAGCTTCGTGGTGTGGGAT 60.003 57.895 0.00 0.00 39.17 3.85
1343 1363 2.746277 GTCTGCGGCGGTTCCATT 60.746 61.111 9.78 0.00 34.01 3.16
1344 1364 2.435938 TCTGCGGCGGTTCCATTC 60.436 61.111 9.78 0.00 34.01 2.67
1345 1365 2.436646 CTGCGGCGGTTCCATTCT 60.437 61.111 9.78 0.00 34.01 2.40
1346 1366 2.033448 TGCGGCGGTTCCATTCTT 59.967 55.556 9.78 0.00 34.01 2.52
1349 1369 0.732538 GCGGCGGTTCCATTCTTTTG 60.733 55.000 9.78 0.00 34.01 2.44
1350 1370 0.732538 CGGCGGTTCCATTCTTTTGC 60.733 55.000 0.00 0.00 34.01 3.68
1352 1372 1.669795 GGCGGTTCCATTCTTTTGCTG 60.670 52.381 0.00 0.00 34.01 4.41
1353 1373 1.269448 GCGGTTCCATTCTTTTGCTGA 59.731 47.619 0.00 0.00 0.00 4.26
1369 1389 1.004504 GCTGATCGATCGCTGTTTTCC 60.005 52.381 24.96 1.70 0.00 3.13
1393 1413 2.602878 CTTTGCTGATGAATGTGGTGC 58.397 47.619 0.00 0.00 0.00 5.01
1397 1417 1.402968 GCTGATGAATGTGGTGCGATT 59.597 47.619 0.00 0.00 0.00 3.34
1398 1418 2.793585 GCTGATGAATGTGGTGCGATTG 60.794 50.000 0.00 0.00 0.00 2.67
1405 1425 0.817229 TGTGGTGCGATTGTTGCAGA 60.817 50.000 0.00 0.00 44.21 4.26
1862 1882 3.353836 GCGGCTTCTCAACGCCAA 61.354 61.111 0.00 0.00 46.62 4.52
1864 1884 1.961277 CGGCTTCTCAACGCCAACT 60.961 57.895 0.00 0.00 46.62 3.16
1866 1886 0.603975 GGCTTCTCAACGCCAACTCT 60.604 55.000 0.00 0.00 45.59 3.24
1896 1916 3.998672 GCGGAGGACGGGTTCACA 61.999 66.667 0.00 0.00 44.51 3.58
2019 2051 1.299468 GCAGGCGGAGATAGACGTG 60.299 63.158 0.00 0.00 0.00 4.49
2022 2054 0.820074 AGGCGGAGATAGACGTGGAG 60.820 60.000 0.00 0.00 0.00 3.86
2031 2063 0.034380 TAGACGTGGAGGTGGAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
2066 2098 3.399181 GGACATGGAGCCGTGGGA 61.399 66.667 12.98 0.00 37.27 4.37
2106 2138 1.415289 CAGGACCTGATGCAGCAGATA 59.585 52.381 32.59 0.00 38.14 1.98
2119 2151 1.137872 AGCAGATAGACTCCTTTGCCG 59.862 52.381 0.00 0.00 32.21 5.69
2122 2154 0.533085 GATAGACTCCTTTGCCGGCC 60.533 60.000 26.77 5.30 0.00 6.13
2147 2179 3.426695 CCCAGTTGTTGAATCTTGATCGC 60.427 47.826 0.00 0.00 0.00 4.58
2157 2189 1.117994 TCTTGATCGCCTCATCAGCT 58.882 50.000 0.00 0.00 34.22 4.24
2164 2196 1.592131 GCCTCATCAGCTCAGCTCG 60.592 63.158 0.00 0.00 36.40 5.03
2175 2207 0.445436 CTCAGCTCGGCACAATTCAC 59.555 55.000 0.00 0.00 0.00 3.18
2176 2208 0.035317 TCAGCTCGGCACAATTCACT 59.965 50.000 0.00 0.00 0.00 3.41
2178 2210 1.662629 CAGCTCGGCACAATTCACTAG 59.337 52.381 0.00 0.00 0.00 2.57
2179 2211 1.276421 AGCTCGGCACAATTCACTAGT 59.724 47.619 0.00 0.00 0.00 2.57
2184 2216 5.276461 TCGGCACAATTCACTAGTATCAT 57.724 39.130 0.00 0.00 0.00 2.45
2186 2218 6.811954 TCGGCACAATTCACTAGTATCATTA 58.188 36.000 0.00 0.00 0.00 1.90
2188 2220 7.931407 TCGGCACAATTCACTAGTATCATTATT 59.069 33.333 0.00 0.00 0.00 1.40
2189 2221 9.203421 CGGCACAATTCACTAGTATCATTATTA 57.797 33.333 0.00 0.00 0.00 0.98
2234 2282 8.059798 AGTAGCTTTGCAGTTTGATTATGATT 57.940 30.769 0.00 0.00 0.00 2.57
2235 2283 9.177608 AGTAGCTTTGCAGTTTGATTATGATTA 57.822 29.630 0.00 0.00 0.00 1.75
2236 2284 9.956720 GTAGCTTTGCAGTTTGATTATGATTAT 57.043 29.630 0.00 0.00 0.00 1.28
2311 2359 1.114627 TCCGGATGATGGAGTCTGTG 58.885 55.000 0.00 0.00 0.00 3.66
2333 2381 0.038166 GATGCAAGGTGTGGAAGGGA 59.962 55.000 0.00 0.00 0.00 4.20
2335 2383 1.973812 GCAAGGTGTGGAAGGGAGC 60.974 63.158 0.00 0.00 0.00 4.70
2347 2399 0.889306 AAGGGAGCGACAGTCAGTAC 59.111 55.000 0.41 0.00 0.00 2.73
2367 2419 1.092345 GCTCCGGAAGTTCAGATGCC 61.092 60.000 5.23 0.00 0.00 4.40
2390 2444 0.037697 GTACCGCCGATGCATCCATA 60.038 55.000 20.87 3.84 37.32 2.74
2404 2458 8.886719 CGATGCATCCATATTCATTACTTGTAT 58.113 33.333 20.87 0.00 0.00 2.29
2432 2486 4.207429 GCTGACGATTTTCTCTCCGAATAC 59.793 45.833 0.00 0.00 0.00 1.89
2503 2562 2.224719 CCAATCTGGGATGGTGATCCTC 60.225 54.545 0.00 0.00 46.88 3.71
2526 2585 4.802039 CACATTAAAAGGCTGTGATGATGC 59.198 41.667 9.37 0.00 42.20 3.91
2527 2586 4.463539 ACATTAAAAGGCTGTGATGATGCA 59.536 37.500 9.37 0.00 0.00 3.96
2528 2587 5.128171 ACATTAAAAGGCTGTGATGATGCAT 59.872 36.000 0.00 0.00 0.00 3.96
2529 2588 3.520290 AAAAGGCTGTGATGATGCATG 57.480 42.857 2.46 0.00 0.00 4.06
2530 2589 2.430248 AAGGCTGTGATGATGCATGA 57.570 45.000 2.46 0.00 0.00 3.07
2531 2590 2.658807 AGGCTGTGATGATGCATGAT 57.341 45.000 2.46 0.00 0.00 2.45
2536 2595 3.548214 GCTGTGATGATGCATGATGTGTC 60.548 47.826 2.46 0.00 0.00 3.67
2555 2614 7.026631 TGTGTCTTTTGATTTGTAGGAACTG 57.973 36.000 0.00 0.00 41.52 3.16
2560 2619 6.490040 TCTTTTGATTTGTAGGAACTGGGAAG 59.510 38.462 0.00 0.00 41.52 3.46
2564 2623 3.502123 TTGTAGGAACTGGGAAGGTTG 57.498 47.619 0.00 0.00 41.52 3.77
2571 2630 2.683211 ACTGGGAAGGTTGCAGAATT 57.317 45.000 0.00 0.00 0.00 2.17
2572 2631 2.242043 ACTGGGAAGGTTGCAGAATTG 58.758 47.619 0.00 0.00 0.00 2.32
2590 2649 2.798976 TGCAGACAGAAAAATGGTGC 57.201 45.000 0.00 0.00 35.76 5.01
2618 2677 6.897966 TCAGGACTACTCCATTTCAAGTCTAT 59.102 38.462 0.00 0.00 39.39 1.98
2619 2678 7.400339 TCAGGACTACTCCATTTCAAGTCTATT 59.600 37.037 0.00 0.00 39.39 1.73
2620 2679 8.043710 CAGGACTACTCCATTTCAAGTCTATTT 58.956 37.037 0.00 0.00 39.39 1.40
2621 2680 8.261522 AGGACTACTCCATTTCAAGTCTATTTC 58.738 37.037 0.00 0.00 39.39 2.17
2622 2681 7.222999 GGACTACTCCATTTCAAGTCTATTTCG 59.777 40.741 0.00 0.00 37.36 3.46
2623 2682 7.612677 ACTACTCCATTTCAAGTCTATTTCGT 58.387 34.615 0.00 0.00 0.00 3.85
2624 2683 8.095169 ACTACTCCATTTCAAGTCTATTTCGTT 58.905 33.333 0.00 0.00 0.00 3.85
2625 2684 7.133891 ACTCCATTTCAAGTCTATTTCGTTG 57.866 36.000 0.00 0.00 0.00 4.10
2626 2685 6.934645 ACTCCATTTCAAGTCTATTTCGTTGA 59.065 34.615 0.00 0.00 0.00 3.18
2627 2686 7.607991 ACTCCATTTCAAGTCTATTTCGTTGAT 59.392 33.333 0.00 0.00 0.00 2.57
2628 2687 7.974675 TCCATTTCAAGTCTATTTCGTTGATC 58.025 34.615 0.00 0.00 0.00 2.92
2629 2688 7.065803 TCCATTTCAAGTCTATTTCGTTGATCC 59.934 37.037 0.00 0.00 0.00 3.36
2630 2689 6.737254 TTTCAAGTCTATTTCGTTGATCCC 57.263 37.500 0.00 0.00 0.00 3.85
2631 2690 4.766375 TCAAGTCTATTTCGTTGATCCCC 58.234 43.478 0.00 0.00 0.00 4.81
2632 2691 3.840124 AGTCTATTTCGTTGATCCCCC 57.160 47.619 0.00 0.00 0.00 5.40
2633 2692 3.112263 AGTCTATTTCGTTGATCCCCCA 58.888 45.455 0.00 0.00 0.00 4.96
2634 2693 3.521937 AGTCTATTTCGTTGATCCCCCAA 59.478 43.478 0.00 0.00 0.00 4.12
2635 2694 4.018779 AGTCTATTTCGTTGATCCCCCAAA 60.019 41.667 0.00 0.00 0.00 3.28
2636 2695 4.703093 GTCTATTTCGTTGATCCCCCAAAA 59.297 41.667 0.00 0.00 0.00 2.44
2637 2696 5.184287 GTCTATTTCGTTGATCCCCCAAAAA 59.816 40.000 0.00 0.00 0.00 1.94
2638 2697 4.535526 ATTTCGTTGATCCCCCAAAAAG 57.464 40.909 0.00 0.00 0.00 2.27
2639 2698 2.961531 TCGTTGATCCCCCAAAAAGA 57.038 45.000 0.00 0.00 0.00 2.52
2640 2699 3.231207 TCGTTGATCCCCCAAAAAGAA 57.769 42.857 0.00 0.00 0.00 2.52
2641 2700 3.153919 TCGTTGATCCCCCAAAAAGAAG 58.846 45.455 0.00 0.00 0.00 2.85
2642 2701 2.890945 CGTTGATCCCCCAAAAAGAAGT 59.109 45.455 0.00 0.00 0.00 3.01
2643 2702 3.057526 CGTTGATCCCCCAAAAAGAAGTC 60.058 47.826 0.00 0.00 0.00 3.01
2644 2703 4.152647 GTTGATCCCCCAAAAAGAAGTCT 58.847 43.478 0.00 0.00 0.00 3.24
2645 2704 5.321927 GTTGATCCCCCAAAAAGAAGTCTA 58.678 41.667 0.00 0.00 0.00 2.59
2646 2705 5.796502 TGATCCCCCAAAAAGAAGTCTAT 57.203 39.130 0.00 0.00 0.00 1.98
2647 2706 6.152638 TGATCCCCCAAAAAGAAGTCTATT 57.847 37.500 0.00 0.00 0.00 1.73
2648 2707 6.561294 TGATCCCCCAAAAAGAAGTCTATTT 58.439 36.000 0.00 0.00 0.00 1.40
2649 2708 6.663523 TGATCCCCCAAAAAGAAGTCTATTTC 59.336 38.462 0.00 0.00 0.00 2.17
2650 2709 5.959512 TCCCCCAAAAAGAAGTCTATTTCA 58.040 37.500 0.00 0.00 0.00 2.69
2651 2710 6.561294 TCCCCCAAAAAGAAGTCTATTTCAT 58.439 36.000 0.00 0.00 0.00 2.57
2652 2711 7.016296 TCCCCCAAAAAGAAGTCTATTTCATT 58.984 34.615 0.00 0.00 0.00 2.57
2653 2712 7.039082 TCCCCCAAAAAGAAGTCTATTTCATTG 60.039 37.037 0.00 0.00 0.00 2.82
2654 2713 7.039082 CCCCCAAAAAGAAGTCTATTTCATTGA 60.039 37.037 0.00 0.00 0.00 2.57
2655 2714 8.534496 CCCCAAAAAGAAGTCTATTTCATTGAT 58.466 33.333 0.00 0.00 0.00 2.57
2656 2715 9.578439 CCCAAAAAGAAGTCTATTTCATTGATC 57.422 33.333 0.00 0.00 0.00 2.92
2675 2734 7.615582 TTGATCAATGACAAATGGACTACTC 57.384 36.000 3.38 0.00 0.00 2.59
2676 2735 6.115446 TGATCAATGACAAATGGACTACTCC 58.885 40.000 0.00 0.00 37.04 3.85
2688 2747 5.152623 TGGACTACTCCATTTCAAGTCTG 57.847 43.478 0.00 0.00 42.15 3.51
2700 2759 5.418310 TTTCAAGTCTGTTTCGTTGATCC 57.582 39.130 0.00 0.00 0.00 3.36
2704 2763 2.632996 AGTCTGTTTCGTTGATCCCTCA 59.367 45.455 0.00 0.00 0.00 3.86
2741 2804 9.642327 CAATTTCATTGATCAGTAATGGTTTCA 57.358 29.630 6.12 0.00 42.83 2.69
2747 2810 5.748402 TGATCAGTAATGGTTTCAGCTCAT 58.252 37.500 0.00 0.00 0.00 2.90
2812 2886 1.622312 TCAGCATGCTCACTGACTTCT 59.378 47.619 19.68 0.00 37.99 2.85
2847 2922 2.035449 TCGTCTTGATTTCGTCACAGGT 59.965 45.455 0.00 0.00 36.32 4.00
2856 2931 2.935955 GTCACAGGTTGCCGTTCG 59.064 61.111 0.00 0.00 0.00 3.95
2910 2988 5.663456 CAAGCACTAACCCAATGCAAATAT 58.337 37.500 0.00 0.00 41.97 1.28
2952 3030 6.314899 TCTGTACTGAGAGATGAACTAGGA 57.685 41.667 0.00 0.00 0.00 2.94
2958 3036 9.092876 GTACTGAGAGATGAACTAGGAAAAATG 57.907 37.037 0.00 0.00 0.00 2.32
3005 3083 4.816385 ACTGGATATAACAACAGCCGAATG 59.184 41.667 0.00 0.00 34.40 2.67
3026 3104 1.670811 AGCACTTCCACAACAGTTTCG 59.329 47.619 0.00 0.00 0.00 3.46
3028 3106 2.096819 GCACTTCCACAACAGTTTCGAA 59.903 45.455 0.00 0.00 0.00 3.71
3118 3199 9.988815 AACATTACATCTTCATATGAGAGTACC 57.011 33.333 5.39 0.00 0.00 3.34
3164 3245 1.408702 TCATCGCCGTCTTCATCATCA 59.591 47.619 0.00 0.00 0.00 3.07
3197 3278 5.051816 CACCTTGACATGAAAGCACAAAAT 58.948 37.500 0.00 0.00 0.00 1.82
3198 3279 5.524646 CACCTTGACATGAAAGCACAAAATT 59.475 36.000 0.00 0.00 0.00 1.82
3208 3305 4.900635 AAGCACAAAATTTCAGTCGTCT 57.099 36.364 0.00 0.00 0.00 4.18
3314 3417 2.093075 CCCAGTGTCTCATCTGCTTCAT 60.093 50.000 0.00 0.00 0.00 2.57
3315 3418 3.196463 CCAGTGTCTCATCTGCTTCATC 58.804 50.000 0.00 0.00 0.00 2.92
3316 3419 3.369157 CCAGTGTCTCATCTGCTTCATCA 60.369 47.826 0.00 0.00 0.00 3.07
3317 3420 4.443621 CAGTGTCTCATCTGCTTCATCAT 58.556 43.478 0.00 0.00 0.00 2.45
3318 3421 4.508492 CAGTGTCTCATCTGCTTCATCATC 59.492 45.833 0.00 0.00 0.00 2.92
3319 3422 4.406326 AGTGTCTCATCTGCTTCATCATCT 59.594 41.667 0.00 0.00 0.00 2.90
3320 3423 5.104859 AGTGTCTCATCTGCTTCATCATCTT 60.105 40.000 0.00 0.00 0.00 2.40
3321 3424 5.234757 GTGTCTCATCTGCTTCATCATCTTC 59.765 44.000 0.00 0.00 0.00 2.87
3322 3425 5.105064 TGTCTCATCTGCTTCATCATCTTCA 60.105 40.000 0.00 0.00 0.00 3.02
3349 3452 3.790152 TCATCTGTCTCATCCTGTTCG 57.210 47.619 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.303091 CGAAAACCATGGACCCGGTC 61.303 60.000 21.47 9.30 33.17 4.79
1 2 1.302993 CGAAAACCATGGACCCGGT 60.303 57.895 21.47 0.00 36.98 5.28
2 3 2.043980 CCGAAAACCATGGACCCGG 61.044 63.158 21.47 19.91 0.00 5.73
3 4 2.696759 GCCGAAAACCATGGACCCG 61.697 63.158 21.47 15.13 0.00 5.28
4 5 1.182385 TTGCCGAAAACCATGGACCC 61.182 55.000 21.47 3.44 0.00 4.46
5 6 0.243636 CTTGCCGAAAACCATGGACC 59.756 55.000 21.47 3.07 0.00 4.46
6 7 0.958822 ACTTGCCGAAAACCATGGAC 59.041 50.000 21.47 5.87 0.00 4.02
7 8 0.958091 CACTTGCCGAAAACCATGGA 59.042 50.000 21.47 0.00 0.00 3.41
8 9 0.038343 CCACTTGCCGAAAACCATGG 60.038 55.000 11.19 11.19 0.00 3.66
9 10 0.673437 ACCACTTGCCGAAAACCATG 59.327 50.000 0.00 0.00 0.00 3.66
10 11 1.068434 CAACCACTTGCCGAAAACCAT 59.932 47.619 0.00 0.00 0.00 3.55
11 12 0.457851 CAACCACTTGCCGAAAACCA 59.542 50.000 0.00 0.00 0.00 3.67
12 13 0.249280 CCAACCACTTGCCGAAAACC 60.249 55.000 0.00 0.00 0.00 3.27
13 14 0.874175 GCCAACCACTTGCCGAAAAC 60.874 55.000 0.00 0.00 0.00 2.43
14 15 1.323271 TGCCAACCACTTGCCGAAAA 61.323 50.000 0.00 0.00 0.00 2.29
15 16 1.754621 TGCCAACCACTTGCCGAAA 60.755 52.632 0.00 0.00 0.00 3.46
16 17 2.124109 TGCCAACCACTTGCCGAA 60.124 55.556 0.00 0.00 0.00 4.30
17 18 2.904866 GTGCCAACCACTTGCCGA 60.905 61.111 0.00 0.00 41.35 5.54
18 19 2.563798 ATGTGCCAACCACTTGCCG 61.564 57.895 0.00 0.00 44.92 5.69
19 20 1.005867 CATGTGCCAACCACTTGCC 60.006 57.895 0.00 0.00 44.92 4.52
20 21 4.659480 CATGTGCCAACCACTTGC 57.341 55.556 0.00 0.00 44.92 4.01
21 22 1.372004 CGCATGTGCCAACCACTTG 60.372 57.895 0.00 5.32 46.67 3.16
22 23 0.895100 ATCGCATGTGCCAACCACTT 60.895 50.000 0.00 0.00 44.92 3.16
23 24 0.035534 TATCGCATGTGCCAACCACT 60.036 50.000 0.00 0.00 44.92 4.00
24 25 0.098728 GTATCGCATGTGCCAACCAC 59.901 55.000 0.00 0.00 44.90 4.16
25 26 0.322008 TGTATCGCATGTGCCAACCA 60.322 50.000 0.00 0.00 37.91 3.67
26 27 0.808125 TTGTATCGCATGTGCCAACC 59.192 50.000 0.00 0.00 37.91 3.77
27 28 2.541588 GGATTGTATCGCATGTGCCAAC 60.542 50.000 0.00 0.16 37.91 3.77
28 29 1.675483 GGATTGTATCGCATGTGCCAA 59.325 47.619 0.00 4.97 37.91 4.52
29 30 1.134128 AGGATTGTATCGCATGTGCCA 60.134 47.619 0.00 0.00 37.91 4.92
30 31 1.597742 AGGATTGTATCGCATGTGCC 58.402 50.000 0.00 0.00 37.91 5.01
31 32 2.990941 CAAGGATTGTATCGCATGTGC 58.009 47.619 0.00 0.00 42.34 4.57
44 45 7.338710 TCATTATCCGAAGAGAAACAAGGATT 58.661 34.615 0.00 0.00 39.07 3.01
52 53 6.183360 ACCTTCGATCATTATCCGAAGAGAAA 60.183 38.462 20.75 0.00 40.86 2.52
54 55 4.827835 ACCTTCGATCATTATCCGAAGAGA 59.172 41.667 20.75 0.00 40.86 3.10
55 56 5.127693 ACCTTCGATCATTATCCGAAGAG 57.872 43.478 20.75 14.37 40.86 2.85
57 58 4.238514 GGACCTTCGATCATTATCCGAAG 58.761 47.826 14.48 14.48 39.63 3.79
58 59 4.252971 GGACCTTCGATCATTATCCGAA 57.747 45.455 0.00 0.00 0.00 4.30
60 61 2.228103 TCGGACCTTCGATCATTATCCG 59.772 50.000 13.44 13.44 46.99 4.18
64 66 4.994907 TCTTTCGGACCTTCGATCATTA 57.005 40.909 0.00 0.00 39.03 1.90
65 67 3.887621 TCTTTCGGACCTTCGATCATT 57.112 42.857 0.00 0.00 39.03 2.57
72 74 5.941948 TCAGAATTTTCTTTCGGACCTTC 57.058 39.130 0.00 0.00 34.74 3.46
73 75 6.901081 ATTCAGAATTTTCTTTCGGACCTT 57.099 33.333 0.00 0.00 34.74 3.50
77 79 8.347035 ACGTTTTATTCAGAATTTTCTTTCGGA 58.653 29.630 0.00 0.00 34.74 4.55
79 81 8.953990 ACACGTTTTATTCAGAATTTTCTTTCG 58.046 29.630 0.00 1.56 34.74 3.46
101 103 1.626654 GCGTCCTCAATCCACACACG 61.627 60.000 0.00 0.00 0.00 4.49
104 107 0.037326 TCAGCGTCCTCAATCCACAC 60.037 55.000 0.00 0.00 0.00 3.82
111 114 2.226437 GCTTGAATTTCAGCGTCCTCAA 59.774 45.455 0.00 0.00 0.00 3.02
112 115 1.806542 GCTTGAATTTCAGCGTCCTCA 59.193 47.619 0.00 0.00 0.00 3.86
118 121 5.441543 CATCTATGAGCTTGAATTTCAGCG 58.558 41.667 12.20 4.94 0.00 5.18
120 123 5.298527 TGCCATCTATGAGCTTGAATTTCAG 59.701 40.000 0.00 0.00 0.00 3.02
130 133 3.554544 CGTCTGAATGCCATCTATGAGCT 60.555 47.826 0.00 0.00 0.00 4.09
135 138 2.366590 TGCTCGTCTGAATGCCATCTAT 59.633 45.455 0.00 0.00 0.00 1.98
144 147 6.336566 GTCCATATGATATGCTCGTCTGAAT 58.663 40.000 3.65 0.00 0.00 2.57
173 176 1.822506 TACTGAGACGGTCCTGACAG 58.177 55.000 4.14 11.50 0.00 3.51
174 177 2.281539 TTACTGAGACGGTCCTGACA 57.718 50.000 4.14 0.20 0.00 3.58
179 182 3.255149 TGAAGAGTTTACTGAGACGGTCC 59.745 47.826 4.14 0.00 0.00 4.46
180 183 4.500603 TGAAGAGTTTACTGAGACGGTC 57.499 45.455 0.00 0.00 0.00 4.79
184 187 9.509855 CACTATACATGAAGAGTTTACTGAGAC 57.490 37.037 0.00 0.00 0.00 3.36
217 221 6.711645 AGCAAAGCAATGAATTTTTACCATGT 59.288 30.769 0.00 0.00 0.00 3.21
227 231 4.075963 ACCACAAGCAAAGCAATGAATT 57.924 36.364 0.00 0.00 0.00 2.17
229 233 3.118847 TGAACCACAAGCAAAGCAATGAA 60.119 39.130 0.00 0.00 0.00 2.57
251 255 8.821686 TGGTGGAAAGTATGATCACAAATATT 57.178 30.769 0.00 0.00 0.00 1.28
257 261 7.135591 TGATATGGTGGAAAGTATGATCACA 57.864 36.000 0.00 0.00 0.00 3.58
258 262 8.627208 AATGATATGGTGGAAAGTATGATCAC 57.373 34.615 0.00 0.00 0.00 3.06
259 263 9.070179 CAAATGATATGGTGGAAAGTATGATCA 57.930 33.333 0.00 0.00 0.00 2.92
278 282 2.279842 GGCACTGCCCACAAATGAT 58.720 52.632 9.13 0.00 44.06 2.45
298 302 0.393944 TCCTATGACTCGGTGCGTCT 60.394 55.000 0.00 0.00 32.70 4.18
307 311 6.364706 CGCTCTTATTGAATGTCCTATGACTC 59.635 42.308 0.00 0.00 42.28 3.36
310 314 5.985530 CACGCTCTTATTGAATGTCCTATGA 59.014 40.000 0.00 0.00 0.00 2.15
320 324 1.355971 GACGCCACGCTCTTATTGAA 58.644 50.000 0.00 0.00 0.00 2.69
332 336 2.179517 CCAGACTCTCGACGCCAC 59.820 66.667 0.00 0.00 0.00 5.01
337 341 2.183046 GCAGGCCAGACTCTCGAC 59.817 66.667 5.01 0.00 0.00 4.20
338 342 3.071206 GGCAGGCCAGACTCTCGA 61.071 66.667 5.01 0.00 35.81 4.04
356 360 1.077501 CTCCCAATGCCCGATGTGT 60.078 57.895 0.00 0.00 0.00 3.72
364 368 1.523938 GCGACTACCTCCCAATGCC 60.524 63.158 0.00 0.00 0.00 4.40
365 369 1.523938 GGCGACTACCTCCCAATGC 60.524 63.158 0.00 0.00 0.00 3.56
368 372 0.907704 ACATGGCGACTACCTCCCAA 60.908 55.000 0.00 0.00 0.00 4.12
369 373 0.907704 AACATGGCGACTACCTCCCA 60.908 55.000 0.00 0.00 0.00 4.37
370 374 0.179081 GAACATGGCGACTACCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
371 375 0.535335 TGAACATGGCGACTACCTCC 59.465 55.000 0.00 0.00 0.00 4.30
372 376 2.205074 CATGAACATGGCGACTACCTC 58.795 52.381 6.87 0.00 35.24 3.85
373 377 1.555075 ACATGAACATGGCGACTACCT 59.445 47.619 17.25 0.00 42.91 3.08
374 378 1.665679 CACATGAACATGGCGACTACC 59.334 52.381 17.25 0.00 42.91 3.18
375 379 2.348666 GTCACATGAACATGGCGACTAC 59.651 50.000 21.26 8.70 42.91 2.73
376 380 2.233676 AGTCACATGAACATGGCGACTA 59.766 45.455 25.74 5.29 45.52 2.59
377 381 1.002430 AGTCACATGAACATGGCGACT 59.998 47.619 23.52 23.52 44.07 4.18
379 383 2.183478 AAGTCACATGAACATGGCGA 57.817 45.000 17.25 11.05 42.91 5.54
380 384 2.352651 CCTAAGTCACATGAACATGGCG 59.647 50.000 17.25 9.20 42.91 5.69
382 386 4.578871 TGTCCTAAGTCACATGAACATGG 58.421 43.478 17.25 7.94 42.91 3.66
383 387 6.748333 AATGTCCTAAGTCACATGAACATG 57.252 37.500 12.43 12.43 44.15 3.21
384 388 8.862325 TTTAATGTCCTAAGTCACATGAACAT 57.138 30.769 0.00 0.00 33.38 2.71
385 389 8.154203 TCTTTAATGTCCTAAGTCACATGAACA 58.846 33.333 0.00 0.00 33.38 3.18
386 390 8.547967 TCTTTAATGTCCTAAGTCACATGAAC 57.452 34.615 0.00 0.00 33.38 3.18
387 391 9.567776 TTTCTTTAATGTCCTAAGTCACATGAA 57.432 29.630 0.00 0.00 33.38 2.57
388 392 9.219603 CTTTCTTTAATGTCCTAAGTCACATGA 57.780 33.333 0.00 0.00 33.38 3.07
389 393 8.454106 CCTTTCTTTAATGTCCTAAGTCACATG 58.546 37.037 0.00 0.00 33.38 3.21
390 394 8.383175 TCCTTTCTTTAATGTCCTAAGTCACAT 58.617 33.333 0.00 0.00 34.58 3.21
395 399 7.883833 GGTCTTCCTTTCTTTAATGTCCTAAGT 59.116 37.037 0.00 0.00 0.00 2.24
406 410 3.977999 TCACCAGGGTCTTCCTTTCTTTA 59.022 43.478 0.00 0.00 45.47 1.85
411 415 0.402121 GCTCACCAGGGTCTTCCTTT 59.598 55.000 0.00 0.00 45.47 3.11
431 435 2.061028 GGTACGGGTTTGTCTACGTTG 58.939 52.381 0.00 0.00 40.38 4.10
435 439 2.837532 TTGGGTACGGGTTTGTCTAC 57.162 50.000 0.00 0.00 0.00 2.59
439 447 1.477377 GGTCTTTGGGTACGGGTTTGT 60.477 52.381 0.00 0.00 0.00 2.83
452 460 0.322456 TTGAGGATGCCCGGTCTTTG 60.322 55.000 0.00 0.00 37.58 2.77
453 461 0.404040 TTTGAGGATGCCCGGTCTTT 59.596 50.000 0.00 0.00 37.58 2.52
454 462 0.035056 CTTTGAGGATGCCCGGTCTT 60.035 55.000 0.00 0.00 37.58 3.01
457 469 0.625849 AATCTTTGAGGATGCCCGGT 59.374 50.000 0.00 0.00 37.58 5.28
463 475 4.036027 CGATTGGGTGAATCTTTGAGGATG 59.964 45.833 0.00 0.00 38.74 3.51
465 477 3.609853 CGATTGGGTGAATCTTTGAGGA 58.390 45.455 0.00 0.00 38.74 3.71
468 480 1.737236 CGCGATTGGGTGAATCTTTGA 59.263 47.619 0.00 0.00 38.74 2.69
473 485 1.062587 CAACTCGCGATTGGGTGAATC 59.937 52.381 10.36 0.00 37.67 2.52
485 497 1.075542 TTTAGCATCCACAACTCGCG 58.924 50.000 0.00 0.00 0.00 5.87
491 503 4.379394 GCTCGTCAAATTTAGCATCCACAA 60.379 41.667 5.92 0.00 35.05 3.33
499 511 1.084289 ACCGGCTCGTCAAATTTAGC 58.916 50.000 0.00 2.60 0.00 3.09
502 514 1.001815 CACAACCGGCTCGTCAAATTT 60.002 47.619 0.00 0.00 0.00 1.82
515 527 6.017934 CCTTCTTTGGATATATCACACAACCG 60.018 42.308 14.60 4.42 0.00 4.44
518 530 6.069088 ACCCCTTCTTTGGATATATCACACAA 60.069 38.462 14.60 6.89 0.00 3.33
537 549 4.760204 CGAACATACAAAGAAAGACCCCTT 59.240 41.667 0.00 0.00 0.00 3.95
603 616 6.347696 TGTCAAATGAATGTTTTTCTTGCCT 58.652 32.000 0.00 0.00 0.00 4.75
604 617 6.258507 ACTGTCAAATGAATGTTTTTCTTGCC 59.741 34.615 0.00 0.00 0.00 4.52
605 618 7.237920 ACTGTCAAATGAATGTTTTTCTTGC 57.762 32.000 0.00 0.00 0.00 4.01
612 625 9.868277 TGAAGTTTTACTGTCAAATGAATGTTT 57.132 25.926 0.00 0.00 0.00 2.83
613 626 9.868277 TTGAAGTTTTACTGTCAAATGAATGTT 57.132 25.926 0.00 0.00 29.22 2.71
614 627 9.301153 GTTGAAGTTTTACTGTCAAATGAATGT 57.699 29.630 0.00 0.00 31.87 2.71
615 628 9.299963 TGTTGAAGTTTTACTGTCAAATGAATG 57.700 29.630 0.00 0.00 31.87 2.67
616 629 9.868277 TTGTTGAAGTTTTACTGTCAAATGAAT 57.132 25.926 0.00 0.00 31.87 2.57
617 630 9.352784 CTTGTTGAAGTTTTACTGTCAAATGAA 57.647 29.630 0.00 0.00 31.87 2.57
618 631 7.973388 CCTTGTTGAAGTTTTACTGTCAAATGA 59.027 33.333 0.00 0.00 31.87 2.57
619 632 7.759433 ACCTTGTTGAAGTTTTACTGTCAAATG 59.241 33.333 0.00 0.00 31.87 2.32
620 633 7.836842 ACCTTGTTGAAGTTTTACTGTCAAAT 58.163 30.769 0.00 0.00 31.87 2.32
621 634 7.222000 ACCTTGTTGAAGTTTTACTGTCAAA 57.778 32.000 0.00 0.00 31.87 2.69
622 635 6.827586 ACCTTGTTGAAGTTTTACTGTCAA 57.172 33.333 0.00 0.00 0.00 3.18
623 636 7.771361 TCATACCTTGTTGAAGTTTTACTGTCA 59.229 33.333 0.00 0.00 0.00 3.58
624 637 8.149973 TCATACCTTGTTGAAGTTTTACTGTC 57.850 34.615 0.00 0.00 0.00 3.51
625 638 8.691661 ATCATACCTTGTTGAAGTTTTACTGT 57.308 30.769 0.00 0.00 0.00 3.55
632 645 9.784531 CCAGATATATCATACCTTGTTGAAGTT 57.215 33.333 15.08 0.00 0.00 2.66
633 646 8.378565 CCCAGATATATCATACCTTGTTGAAGT 58.621 37.037 15.08 0.00 0.00 3.01
634 647 7.335422 GCCCAGATATATCATACCTTGTTGAAG 59.665 40.741 15.08 0.00 0.00 3.02
635 648 7.168219 GCCCAGATATATCATACCTTGTTGAA 58.832 38.462 15.08 0.00 0.00 2.69
636 649 6.296432 GGCCCAGATATATCATACCTTGTTGA 60.296 42.308 15.08 0.00 0.00 3.18
637 650 5.882557 GGCCCAGATATATCATACCTTGTTG 59.117 44.000 15.08 1.30 0.00 3.33
638 651 5.792712 AGGCCCAGATATATCATACCTTGTT 59.207 40.000 15.08 0.00 0.00 2.83
639 652 5.190528 CAGGCCCAGATATATCATACCTTGT 59.809 44.000 15.08 0.00 0.00 3.16
640 653 5.426509 TCAGGCCCAGATATATCATACCTTG 59.573 44.000 15.08 7.21 0.00 3.61
641 654 5.603750 TCAGGCCCAGATATATCATACCTT 58.396 41.667 15.08 0.00 0.00 3.50
642 655 5.215069 CTCAGGCCCAGATATATCATACCT 58.785 45.833 15.08 11.91 0.00 3.08
643 656 4.346418 CCTCAGGCCCAGATATATCATACC 59.654 50.000 15.08 10.02 0.00 2.73
644 657 4.202305 GCCTCAGGCCCAGATATATCATAC 60.202 50.000 3.37 1.64 44.06 2.39
662 675 1.741401 CGAAGCCGAACATGCCTCA 60.741 57.895 0.00 0.00 38.22 3.86
733 746 4.082787 CGCAGGTAGATTTTTGGTGAATGT 60.083 41.667 0.00 0.00 0.00 2.71
801 818 7.965107 CGGATATTTTCTTTGGAAGTTTCTCAG 59.035 37.037 0.00 0.00 32.61 3.35
838 855 3.433314 CCAGAGAGAGGGGATGAATTGTG 60.433 52.174 0.00 0.00 0.00 3.33
839 856 2.776536 CCAGAGAGAGGGGATGAATTGT 59.223 50.000 0.00 0.00 0.00 2.71
840 857 2.776536 ACCAGAGAGAGGGGATGAATTG 59.223 50.000 0.00 0.00 0.00 2.32
841 858 3.142579 ACCAGAGAGAGGGGATGAATT 57.857 47.619 0.00 0.00 0.00 2.17
878 895 6.270000 TGTGGAGTATTTATAGGAGTGGGATG 59.730 42.308 0.00 0.00 0.00 3.51
929 946 1.068264 TCGTGAGTGAGTGATGTCTGC 60.068 52.381 0.00 0.00 0.00 4.26
931 948 1.201181 GCTCGTGAGTGAGTGATGTCT 59.799 52.381 0.00 0.00 38.28 3.41
944 961 3.758973 TTTGGTTGGCCGCTCGTGA 62.759 57.895 0.00 0.00 37.67 4.35
945 962 3.283684 TTTGGTTGGCCGCTCGTG 61.284 61.111 0.00 0.00 37.67 4.35
951 968 1.298788 GTGTTCGTTTGGTTGGCCG 60.299 57.895 0.00 0.00 37.67 6.13
952 969 0.458260 AAGTGTTCGTTTGGTTGGCC 59.542 50.000 0.00 0.00 0.00 5.36
953 970 1.555477 CAAGTGTTCGTTTGGTTGGC 58.445 50.000 0.00 0.00 0.00 4.52
954 971 1.135257 TGCAAGTGTTCGTTTGGTTGG 60.135 47.619 0.00 0.00 0.00 3.77
973 990 4.988598 ACCGAAGTGCAGCCCGTG 62.989 66.667 0.00 0.00 0.00 4.94
974 991 4.681978 GACCGAAGTGCAGCCCGT 62.682 66.667 0.00 0.00 0.00 5.28
975 992 4.680237 TGACCGAAGTGCAGCCCG 62.680 66.667 0.00 0.00 0.00 6.13
976 993 2.731691 TTCTGACCGAAGTGCAGCCC 62.732 60.000 0.00 0.00 0.00 5.19
977 994 1.301716 TTCTGACCGAAGTGCAGCC 60.302 57.895 0.00 0.00 0.00 4.85
978 995 1.569479 GGTTCTGACCGAAGTGCAGC 61.569 60.000 0.00 0.00 35.91 5.25
979 996 2.533318 GGTTCTGACCGAAGTGCAG 58.467 57.895 0.00 0.00 35.91 4.41
980 997 4.771127 GGTTCTGACCGAAGTGCA 57.229 55.556 0.00 0.00 35.91 4.57
988 1005 1.208293 GGAGTCCATCTGGTTCTGACC 59.792 57.143 3.60 0.00 46.71 4.02
989 1006 1.134965 CGGAGTCCATCTGGTTCTGAC 60.135 57.143 10.49 0.00 36.34 3.51
990 1007 1.186200 CGGAGTCCATCTGGTTCTGA 58.814 55.000 10.49 0.00 36.34 3.27
991 1008 0.460987 GCGGAGTCCATCTGGTTCTG 60.461 60.000 10.49 2.72 34.56 3.02
992 1009 1.617947 GGCGGAGTCCATCTGGTTCT 61.618 60.000 10.49 0.00 34.56 3.01
993 1010 1.153349 GGCGGAGTCCATCTGGTTC 60.153 63.158 10.49 0.00 34.56 3.62
994 1011 2.990479 GGCGGAGTCCATCTGGTT 59.010 61.111 10.49 0.00 34.56 3.67
995 1012 3.461773 CGGCGGAGTCCATCTGGT 61.462 66.667 10.49 0.00 34.56 4.00
1017 1034 2.014554 CTTGACGTCCACGGTCACG 61.015 63.158 14.12 7.43 44.95 4.35
1024 1041 1.374758 CCTCCTGCTTGACGTCCAC 60.375 63.158 14.12 2.70 0.00 4.02
1030 1047 2.270527 GGGCTCCTCCTGCTTGAC 59.729 66.667 0.00 0.00 34.39 3.18
1265 1285 2.117779 TTGGCGTGCTTGAAGTGCA 61.118 52.632 8.09 0.00 38.19 4.57
1266 1286 1.658409 GTTGGCGTGCTTGAAGTGC 60.658 57.895 0.00 0.00 0.00 4.40
1327 1347 2.435938 GAATGGAACCGCCGCAGA 60.436 61.111 0.00 0.00 40.66 4.26
1334 1354 3.728864 CGATCAGCAAAAGAATGGAACCG 60.729 47.826 0.00 0.00 0.00 4.44
1343 1363 1.929169 CAGCGATCGATCAGCAAAAGA 59.071 47.619 29.97 0.00 0.00 2.52
1344 1364 1.662629 ACAGCGATCGATCAGCAAAAG 59.337 47.619 29.97 21.98 0.00 2.27
1345 1365 1.725641 ACAGCGATCGATCAGCAAAA 58.274 45.000 29.97 0.00 0.00 2.44
1346 1366 1.725641 AACAGCGATCGATCAGCAAA 58.274 45.000 29.97 0.00 0.00 3.68
1349 1369 1.004504 GGAAAACAGCGATCGATCAGC 60.005 52.381 24.40 24.69 0.00 4.26
1350 1370 2.544685 AGGAAAACAGCGATCGATCAG 58.455 47.619 24.40 17.27 0.00 2.90
1352 1372 2.285488 GGAAGGAAAACAGCGATCGATC 59.715 50.000 21.57 15.68 0.00 3.69
1353 1373 2.093447 AGGAAGGAAAACAGCGATCGAT 60.093 45.455 21.57 10.64 0.00 3.59
1369 1389 3.508793 ACCACATTCATCAGCAAAGGAAG 59.491 43.478 0.00 0.00 0.00 3.46
1393 1413 2.002586 ACGGAATCTCTGCAACAATCG 58.997 47.619 0.00 0.00 0.00 3.34
1397 1417 2.301870 ACCTTACGGAATCTCTGCAACA 59.698 45.455 0.00 0.00 0.00 3.33
1398 1418 2.673368 CACCTTACGGAATCTCTGCAAC 59.327 50.000 0.00 0.00 0.00 4.17
1405 1425 1.206371 CGGGTTCACCTTACGGAATCT 59.794 52.381 0.00 0.00 36.97 2.40
1533 1553 2.503375 GACGACGACGGCGACAAT 60.503 61.111 32.70 6.94 44.46 2.71
1581 1601 3.615811 TCCAGCTCCCCCTCCACT 61.616 66.667 0.00 0.00 0.00 4.00
1823 1843 1.996292 CTTCTTCTTGCCGTCGATGA 58.004 50.000 6.11 0.00 0.00 2.92
1825 1845 1.078759 CGCTTCTTCTTGCCGTCGAT 61.079 55.000 0.00 0.00 0.00 3.59
1851 1871 0.944311 GCGAAGAGTTGGCGTTGAGA 60.944 55.000 0.00 0.00 0.00 3.27
1896 1916 1.220206 CAGTGCCAGCTCCTCGAAT 59.780 57.895 0.00 0.00 0.00 3.34
2019 2051 2.363147 ACGAGCTCCTCCACCTCC 60.363 66.667 8.47 0.00 0.00 4.30
2022 2054 4.459089 GCCACGAGCTCCTCCACC 62.459 72.222 8.47 0.00 38.99 4.61
2066 2098 2.756283 CCTCCTCCTCGCCGAACT 60.756 66.667 0.00 0.00 0.00 3.01
2106 2138 4.035102 GGGCCGGCAAAGGAGTCT 62.035 66.667 30.85 0.00 0.00 3.24
2119 2151 4.966787 TCAACAACTGGGCGGGCC 62.967 66.667 14.65 14.65 0.00 5.80
2122 2154 1.068333 CAAGATTCAACAACTGGGCGG 60.068 52.381 0.00 0.00 0.00 6.13
2147 2179 1.067749 CCGAGCTGAGCTGATGAGG 59.932 63.158 13.71 3.28 39.88 3.86
2157 2189 0.035317 AGTGAATTGTGCCGAGCTGA 59.965 50.000 0.00 0.00 0.00 4.26
2175 2207 9.944663 GCTGCTAGCTACTAATAATGATACTAG 57.055 37.037 17.23 0.00 38.45 2.57
2176 2208 9.462606 TGCTGCTAGCTACTAATAATGATACTA 57.537 33.333 17.23 0.00 42.97 1.82
2178 2210 7.704472 CCTGCTGCTAGCTACTAATAATGATAC 59.296 40.741 17.23 0.00 42.97 2.24
2179 2211 7.147828 CCCTGCTGCTAGCTACTAATAATGATA 60.148 40.741 17.23 0.00 42.97 2.15
2184 2216 3.006967 GCCCTGCTGCTAGCTACTAATAA 59.993 47.826 17.23 0.00 42.97 1.40
2186 2218 1.346068 GCCCTGCTGCTAGCTACTAAT 59.654 52.381 17.23 0.00 42.97 1.73
2188 2220 0.397114 TGCCCTGCTGCTAGCTACTA 60.397 55.000 17.23 0.00 42.97 1.82
2189 2221 1.053264 ATGCCCTGCTGCTAGCTACT 61.053 55.000 17.23 0.00 42.97 2.57
2190 2222 0.681733 TATGCCCTGCTGCTAGCTAC 59.318 55.000 17.23 8.44 42.97 3.58
2191 2223 0.972134 CTATGCCCTGCTGCTAGCTA 59.028 55.000 17.23 1.31 42.97 3.32
2192 2224 1.053264 ACTATGCCCTGCTGCTAGCT 61.053 55.000 17.23 0.00 42.97 3.32
2193 2225 0.681733 TACTATGCCCTGCTGCTAGC 59.318 55.000 8.10 8.10 42.82 3.42
2194 2226 1.337635 GCTACTATGCCCTGCTGCTAG 60.338 57.143 0.00 0.00 0.00 3.42
2234 2282 5.666462 ACGACAAGCACACATATGGTAATA 58.334 37.500 7.80 0.00 0.00 0.98
2235 2283 4.513442 ACGACAAGCACACATATGGTAAT 58.487 39.130 7.80 0.00 0.00 1.89
2236 2284 3.932822 ACGACAAGCACACATATGGTAA 58.067 40.909 7.80 0.00 0.00 2.85
2237 2285 3.603158 ACGACAAGCACACATATGGTA 57.397 42.857 7.80 0.00 0.00 3.25
2240 2288 2.160219 AGCAACGACAAGCACACATATG 59.840 45.455 0.00 0.00 0.00 1.78
2311 2359 0.967380 CTTCCACACCTTGCATCCCC 60.967 60.000 0.00 0.00 0.00 4.81
2333 2381 3.669686 AGCGTACTGACTGTCGCT 58.330 55.556 18.66 18.66 44.34 4.93
2335 2383 1.226046 CGGAGCGTACTGACTGTCG 60.226 63.158 2.98 0.99 0.00 4.35
2347 2399 1.424493 GCATCTGAACTTCCGGAGCG 61.424 60.000 3.34 2.33 0.00 5.03
2367 2419 0.388649 GATGCATCGGCGGTACCTAG 60.389 60.000 11.68 0.91 45.35 3.02
2390 2444 6.183360 CGTCAGCCCAAATACAAGTAATGAAT 60.183 38.462 0.00 0.00 0.00 2.57
2404 2458 3.074412 GAGAGAAAATCGTCAGCCCAAA 58.926 45.455 0.00 0.00 0.00 3.28
2450 2508 6.381801 ACGCTGAAGAAACAAATTAGAATGG 58.618 36.000 0.00 0.00 0.00 3.16
2499 2557 4.365514 TCACAGCCTTTTAATGTGAGGA 57.634 40.909 5.01 0.00 46.17 3.71
2503 2562 4.802039 GCATCATCACAGCCTTTTAATGTG 59.198 41.667 0.57 0.57 44.48 3.21
2513 2572 1.954382 ACATCATGCATCATCACAGCC 59.046 47.619 0.00 0.00 0.00 4.85
2526 2585 7.819644 TCCTACAAATCAAAAGACACATCATG 58.180 34.615 0.00 0.00 0.00 3.07
2527 2586 8.299570 GTTCCTACAAATCAAAAGACACATCAT 58.700 33.333 0.00 0.00 0.00 2.45
2528 2587 7.502226 AGTTCCTACAAATCAAAAGACACATCA 59.498 33.333 0.00 0.00 0.00 3.07
2529 2588 7.805071 CAGTTCCTACAAATCAAAAGACACATC 59.195 37.037 0.00 0.00 0.00 3.06
2530 2589 7.255590 CCAGTTCCTACAAATCAAAAGACACAT 60.256 37.037 0.00 0.00 0.00 3.21
2531 2590 6.039270 CCAGTTCCTACAAATCAAAAGACACA 59.961 38.462 0.00 0.00 0.00 3.72
2536 2595 6.294731 CCTTCCCAGTTCCTACAAATCAAAAG 60.295 42.308 0.00 0.00 0.00 2.27
2571 2630 2.309613 AGCACCATTTTTCTGTCTGCA 58.690 42.857 0.00 0.00 0.00 4.41
2572 2631 3.375782 AAGCACCATTTTTCTGTCTGC 57.624 42.857 0.00 0.00 0.00 4.26
2573 2632 4.935702 TGAAAGCACCATTTTTCTGTCTG 58.064 39.130 0.00 0.00 35.02 3.51
2574 2633 4.038402 CCTGAAAGCACCATTTTTCTGTCT 59.962 41.667 0.00 0.00 35.02 3.41
2575 2634 4.037923 TCCTGAAAGCACCATTTTTCTGTC 59.962 41.667 0.00 0.00 35.02 3.51
2576 2635 3.960102 TCCTGAAAGCACCATTTTTCTGT 59.040 39.130 0.00 0.00 35.02 3.41
2577 2636 4.038402 AGTCCTGAAAGCACCATTTTTCTG 59.962 41.667 0.00 0.00 35.02 3.02
2578 2637 4.218312 AGTCCTGAAAGCACCATTTTTCT 58.782 39.130 0.00 0.00 35.02 2.52
2579 2638 4.590850 AGTCCTGAAAGCACCATTTTTC 57.409 40.909 0.00 0.00 34.64 2.29
2580 2639 5.140454 AGTAGTCCTGAAAGCACCATTTTT 58.860 37.500 0.00 0.00 0.00 1.94
2581 2640 4.729868 AGTAGTCCTGAAAGCACCATTTT 58.270 39.130 0.00 0.00 0.00 1.82
2582 2641 4.327680 GAGTAGTCCTGAAAGCACCATTT 58.672 43.478 0.00 0.00 0.00 2.32
2583 2642 3.307762 GGAGTAGTCCTGAAAGCACCATT 60.308 47.826 9.55 0.00 40.17 3.16
2584 2643 2.237392 GGAGTAGTCCTGAAAGCACCAT 59.763 50.000 9.55 0.00 40.17 3.55
2585 2644 1.623811 GGAGTAGTCCTGAAAGCACCA 59.376 52.381 9.55 0.00 40.17 4.17
2590 2649 6.234177 ACTTGAAATGGAGTAGTCCTGAAAG 58.766 40.000 17.62 14.50 44.30 2.62
2618 2677 3.567397 TCTTTTTGGGGGATCAACGAAA 58.433 40.909 0.00 0.00 0.00 3.46
2619 2678 3.231207 TCTTTTTGGGGGATCAACGAA 57.769 42.857 0.00 0.00 0.00 3.85
2620 2679 2.961531 TCTTTTTGGGGGATCAACGA 57.038 45.000 0.00 0.00 0.00 3.85
2621 2680 2.890945 ACTTCTTTTTGGGGGATCAACG 59.109 45.455 0.00 0.00 0.00 4.10
2622 2681 4.152647 AGACTTCTTTTTGGGGGATCAAC 58.847 43.478 0.00 0.00 0.00 3.18
2623 2682 4.469469 AGACTTCTTTTTGGGGGATCAA 57.531 40.909 0.00 0.00 0.00 2.57
2624 2683 5.796502 ATAGACTTCTTTTTGGGGGATCA 57.203 39.130 0.00 0.00 0.00 2.92
2625 2684 6.663523 TGAAATAGACTTCTTTTTGGGGGATC 59.336 38.462 0.08 0.00 29.46 3.36
2626 2685 6.561294 TGAAATAGACTTCTTTTTGGGGGAT 58.439 36.000 0.08 0.00 29.46 3.85
2627 2686 5.959512 TGAAATAGACTTCTTTTTGGGGGA 58.040 37.500 0.08 0.00 29.46 4.81
2628 2687 6.857437 ATGAAATAGACTTCTTTTTGGGGG 57.143 37.500 0.08 0.00 29.46 5.40
2629 2688 7.895759 TCAATGAAATAGACTTCTTTTTGGGG 58.104 34.615 0.08 0.00 29.46 4.96
2630 2689 9.578439 GATCAATGAAATAGACTTCTTTTTGGG 57.422 33.333 0.08 0.00 29.46 4.12
2650 2709 7.284034 GGAGTAGTCCATTTGTCATTGATCAAT 59.716 37.037 15.36 15.36 43.31 2.57
2651 2710 6.599244 GGAGTAGTCCATTTGTCATTGATCAA 59.401 38.462 11.26 11.26 43.31 2.57
2652 2711 6.115446 GGAGTAGTCCATTTGTCATTGATCA 58.885 40.000 12.02 0.00 43.31 2.92
2653 2712 6.610741 GGAGTAGTCCATTTGTCATTGATC 57.389 41.667 12.02 0.00 43.31 2.92
2667 2726 5.153950 ACAGACTTGAAATGGAGTAGTCC 57.846 43.478 9.91 9.91 44.24 3.85
2668 2727 6.128795 CGAAACAGACTTGAAATGGAGTAGTC 60.129 42.308 0.00 0.00 36.38 2.59
2669 2728 5.696724 CGAAACAGACTTGAAATGGAGTAGT 59.303 40.000 0.00 0.00 0.00 2.73
2670 2729 5.696724 ACGAAACAGACTTGAAATGGAGTAG 59.303 40.000 0.00 0.00 0.00 2.57
2671 2730 5.607477 ACGAAACAGACTTGAAATGGAGTA 58.393 37.500 0.00 0.00 0.00 2.59
2672 2731 4.451900 ACGAAACAGACTTGAAATGGAGT 58.548 39.130 0.00 0.00 0.00 3.85
2673 2732 5.007626 TCAACGAAACAGACTTGAAATGGAG 59.992 40.000 0.00 0.00 0.00 3.86
2674 2733 4.878971 TCAACGAAACAGACTTGAAATGGA 59.121 37.500 0.00 0.00 0.00 3.41
2675 2734 5.168526 TCAACGAAACAGACTTGAAATGG 57.831 39.130 0.00 0.00 0.00 3.16
2676 2735 5.853282 GGATCAACGAAACAGACTTGAAATG 59.147 40.000 0.00 0.00 0.00 2.32
2677 2736 5.048713 GGGATCAACGAAACAGACTTGAAAT 60.049 40.000 0.00 0.00 0.00 2.17
2678 2737 4.274950 GGGATCAACGAAACAGACTTGAAA 59.725 41.667 0.00 0.00 0.00 2.69
2679 2738 3.813166 GGGATCAACGAAACAGACTTGAA 59.187 43.478 0.00 0.00 0.00 2.69
2680 2739 3.071023 AGGGATCAACGAAACAGACTTGA 59.929 43.478 0.00 0.00 0.00 3.02
2681 2740 3.403038 AGGGATCAACGAAACAGACTTG 58.597 45.455 0.00 0.00 0.00 3.16
2682 2741 3.071023 TGAGGGATCAACGAAACAGACTT 59.929 43.478 0.00 0.00 0.00 3.01
2683 2742 2.632996 TGAGGGATCAACGAAACAGACT 59.367 45.455 0.00 0.00 0.00 3.24
2684 2743 3.040147 TGAGGGATCAACGAAACAGAC 57.960 47.619 0.00 0.00 0.00 3.51
2716 2775 9.865321 CTGAAACCATTACTGATCAATGAAATT 57.135 29.630 7.33 0.74 35.77 1.82
2741 2804 9.445878 CATATTAGTTATCCATGTTCATGAGCT 57.554 33.333 11.09 0.00 0.00 4.09
2847 2922 0.034337 AAGCTTCTACCGAACGGCAA 59.966 50.000 13.32 3.33 39.32 4.52
2856 2931 9.712305 TGCAGATAATATTTCTAAGCTTCTACC 57.288 33.333 0.00 0.00 0.00 3.18
2910 2988 4.688879 ACAGATGCGTTGATTTTCGTCTAA 59.311 37.500 0.00 0.00 0.00 2.10
2952 3030 7.551035 TTGTTTGCTCAAGTTATGCATTTTT 57.449 28.000 3.54 0.00 36.55 1.94
2958 3036 7.435192 AGTTACTTTTGTTTGCTCAAGTTATGC 59.565 33.333 0.00 0.00 31.83 3.14
3005 3083 2.286418 CGAAACTGTTGTGGAAGTGCTC 60.286 50.000 0.00 0.00 0.00 4.26
3026 3104 3.304293 GTGTGTTTTTCTGCTGCTGTTTC 59.696 43.478 0.00 0.00 0.00 2.78
3028 3106 2.230992 TGTGTGTTTTTCTGCTGCTGTT 59.769 40.909 0.00 0.00 0.00 3.16
3107 3188 6.205076 GTCGATAAAGCTCTGGTACTCTCATA 59.795 42.308 0.00 0.00 0.00 2.15
3112 3193 4.096682 ACTGTCGATAAAGCTCTGGTACTC 59.903 45.833 0.00 0.00 0.00 2.59
3118 3199 5.172232 CGATAACACTGTCGATAAAGCTCTG 59.828 44.000 0.00 0.00 38.35 3.35
3164 3245 6.653526 TTCATGTCAAGGTGTGATGAATTT 57.346 33.333 0.00 0.00 38.90 1.82
3197 3278 3.703286 TGAAGACGAAGACGACTGAAA 57.297 42.857 0.00 0.00 42.60 2.69
3198 3279 3.252458 TGATGAAGACGAAGACGACTGAA 59.748 43.478 0.00 0.00 42.60 3.02
3208 3305 6.276091 AGATGAATTCGATGATGAAGACGAA 58.724 36.000 0.00 0.00 45.88 3.85
3314 3417 7.069578 TGAGACAGATGAAGATGATGAAGATGA 59.930 37.037 0.00 0.00 0.00 2.92
3315 3418 7.210873 TGAGACAGATGAAGATGATGAAGATG 58.789 38.462 0.00 0.00 0.00 2.90
3316 3419 7.362802 TGAGACAGATGAAGATGATGAAGAT 57.637 36.000 0.00 0.00 0.00 2.40
3317 3420 6.786967 TGAGACAGATGAAGATGATGAAGA 57.213 37.500 0.00 0.00 0.00 2.87
3318 3421 6.647481 GGATGAGACAGATGAAGATGATGAAG 59.353 42.308 0.00 0.00 0.00 3.02
3319 3422 6.326843 AGGATGAGACAGATGAAGATGATGAA 59.673 38.462 0.00 0.00 0.00 2.57
3320 3423 5.839606 AGGATGAGACAGATGAAGATGATGA 59.160 40.000 0.00 0.00 0.00 2.92
3321 3424 5.929415 CAGGATGAGACAGATGAAGATGATG 59.071 44.000 0.00 0.00 39.69 3.07
3322 3425 5.603395 ACAGGATGAGACAGATGAAGATGAT 59.397 40.000 0.00 0.00 39.69 2.45
3349 3452 1.865340 GAAAATGAGGATACCGCGGAC 59.135 52.381 35.90 21.49 37.17 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.