Multiple sequence alignment - TraesCS7A01G359800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G359800 chr7A 100.000 4365 0 0 1 4365 533585740 533581376 0.000000e+00 8061.0
1 TraesCS7A01G359800 chr7A 90.057 875 73 7 3415 4281 565439077 565439945 0.000000e+00 1122.0
2 TraesCS7A01G359800 chr7A 83.699 865 100 18 2165 3006 533599205 533598359 0.000000e+00 778.0
3 TraesCS7A01G359800 chr7A 87.827 649 23 23 30 653 533601227 533600610 0.000000e+00 710.0
4 TraesCS7A01G359800 chr7A 84.436 559 63 19 1134 1684 533600199 533599657 2.990000e-146 529.0
5 TraesCS7A01G359800 chr7A 95.765 307 12 1 351 657 533597840 533597535 1.090000e-135 494.0
6 TraesCS7A01G359800 chr7A 82.723 573 58 29 1134 1684 533597090 533596537 5.110000e-129 472.0
7 TraesCS7A01G359800 chr7A 88.415 328 28 3 1671 1988 533599620 533599293 1.900000e-103 387.0
8 TraesCS7A01G359800 chr7A 95.556 90 4 0 2079 2168 9657378 9657467 1.270000e-30 145.0
9 TraesCS7A01G359800 chr7A 91.860 86 7 0 2082 2167 695622767 695622852 2.130000e-23 121.0
10 TraesCS7A01G359800 chr7D 93.056 1152 70 7 2163 3314 467158383 467159524 0.000000e+00 1676.0
11 TraesCS7A01G359800 chr7D 89.760 1123 59 23 1000 2083 467157281 467158386 0.000000e+00 1386.0
12 TraesCS7A01G359800 chr7D 91.300 954 58 6 3415 4365 467161472 467162403 0.000000e+00 1279.0
13 TraesCS7A01G359800 chr7D 86.820 607 52 17 1396 1979 467042152 467042753 0.000000e+00 652.0
14 TraesCS7A01G359800 chr7D 91.176 442 32 2 2761 3195 467043899 467044340 1.050000e-165 593.0
15 TraesCS7A01G359800 chr7D 87.212 391 37 11 268 655 467041017 467041397 2.410000e-117 433.0
16 TraesCS7A01G359800 chr7D 97.076 171 5 0 2165 2335 467042805 467042975 5.520000e-74 289.0
17 TraesCS7A01G359800 chr7D 94.488 127 6 1 3188 3314 467159547 467159672 1.240000e-45 195.0
18 TraesCS7A01G359800 chr7D 88.148 135 10 2 2566 2700 467043493 467043621 5.850000e-34 156.0
19 TraesCS7A01G359800 chr7D 94.872 78 3 1 110 186 467156468 467156545 2.130000e-23 121.0
20 TraesCS7A01G359800 chr7D 85.981 107 11 2 2076 2182 20516218 20516320 1.280000e-20 111.0
21 TraesCS7A01G359800 chr7D 97.297 37 1 0 2701 2737 467043865 467043901 3.640000e-06 63.9
22 TraesCS7A01G359800 chr7B 90.191 1254 93 12 2158 3409 490676959 490678184 0.000000e+00 1607.0
23 TraesCS7A01G359800 chr7B 86.964 1166 85 37 973 2107 490675735 490676864 0.000000e+00 1249.0
24 TraesCS7A01G359800 chr7B 88.921 695 47 9 2701 3388 490673452 490674123 0.000000e+00 830.0
25 TraesCS7A01G359800 chr7B 92.471 518 35 3 3849 4365 490681093 490681607 0.000000e+00 737.0
26 TraesCS7A01G359800 chr7B 94.231 416 23 1 3415 3830 490680110 490680524 6.160000e-178 634.0
27 TraesCS7A01G359800 chr6A 89.143 875 73 10 3415 4281 68978085 68977225 0.000000e+00 1070.0
28 TraesCS7A01G359800 chr6A 93.750 288 17 1 368 655 18738159 18738445 8.670000e-117 431.0
29 TraesCS7A01G359800 chr6A 93.750 288 17 1 368 655 18743305 18743591 8.670000e-117 431.0
30 TraesCS7A01G359800 chr6A 95.067 223 9 2 444 665 172116914 172117135 2.500000e-92 350.0
31 TraesCS7A01G359800 chr6A 84.821 112 12 4 2079 2189 593927353 593927246 1.660000e-19 108.0
32 TraesCS7A01G359800 chr1A 91.000 300 22 2 3893 4187 543395589 543395290 2.450000e-107 399.0
33 TraesCS7A01G359800 chr1A 93.571 140 9 0 4140 4279 543393995 543393856 4.420000e-50 209.0
34 TraesCS7A01G359800 chr1A 84.404 109 12 4 2079 2186 481241376 481241272 7.720000e-18 102.0
35 TraesCS7A01G359800 chr5D 86.711 301 39 1 358 657 465030729 465031029 2.520000e-87 333.0
36 TraesCS7A01G359800 chr5D 96.774 93 3 0 2077 2169 10524927 10524835 5.850000e-34 156.0
37 TraesCS7A01G359800 chr5D 93.617 94 6 0 2076 2169 387711315 387711222 1.640000e-29 141.0
38 TraesCS7A01G359800 chr5B 86.319 307 40 2 349 654 572389784 572390089 2.520000e-87 333.0
39 TraesCS7A01G359800 chr5A 86.780 295 37 2 364 657 585429449 585429742 1.170000e-85 327.0
40 TraesCS7A01G359800 chr4D 95.833 96 4 0 2079 2174 198482943 198483038 5.850000e-34 156.0
41 TraesCS7A01G359800 chr4D 91.000 100 9 0 2072 2171 215187695 215187794 7.610000e-28 135.0
42 TraesCS7A01G359800 chr3A 95.604 91 3 1 2077 2167 660055964 660055875 1.270000e-30 145.0
43 TraesCS7A01G359800 chr2A 93.684 95 6 0 2079 2173 78805674 78805768 4.550000e-30 143.0
44 TraesCS7A01G359800 chrUn 92.000 100 8 0 2072 2171 96524680 96524779 1.640000e-29 141.0
45 TraesCS7A01G359800 chr6D 91.000 100 9 0 2072 2171 291718663 291718564 7.610000e-28 135.0
46 TraesCS7A01G359800 chr6D 87.387 111 11 2 2082 2192 385916941 385917048 1.650000e-24 124.0
47 TraesCS7A01G359800 chr6D 90.566 53 4 1 1 52 455718070 455718122 7.830000e-08 69.4
48 TraesCS7A01G359800 chr4A 85.047 107 15 1 2079 2184 607946144 607946038 1.660000e-19 108.0
49 TraesCS7A01G359800 chr3B 86.813 91 12 0 2080 2170 111565280 111565370 7.720000e-18 102.0
50 TraesCS7A01G359800 chr3B 94.872 39 2 0 1 39 678709817 678709779 1.310000e-05 62.1
51 TraesCS7A01G359800 chr2B 83.636 110 16 2 2080 2189 770660235 770660128 7.720000e-18 102.0
52 TraesCS7A01G359800 chr2B 97.143 35 0 1 1 34 548943755 548943721 1.700000e-04 58.4
53 TraesCS7A01G359800 chr1D 80.508 118 17 4 2079 2191 474446544 474446428 7.780000e-13 86.1
54 TraesCS7A01G359800 chr1D 94.595 37 1 1 1 36 207717050 207717014 6.100000e-04 56.5
55 TraesCS7A01G359800 chr6B 94.595 37 1 1 1 36 532984675 532984711 6.100000e-04 56.5
56 TraesCS7A01G359800 chr6B 94.595 37 1 1 1 36 533181352 533181388 6.100000e-04 56.5
57 TraesCS7A01G359800 chr4B 94.595 37 1 1 1 36 343817884 343817920 6.100000e-04 56.5
58 TraesCS7A01G359800 chr4B 100.000 30 0 0 11 40 405905498 405905469 6.100000e-04 56.5
59 TraesCS7A01G359800 chr1B 94.595 37 1 1 1 36 437288405 437288369 6.100000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G359800 chr7A 533581376 533585740 4364 True 8061.000000 8061 100.000000 1 4365 1 chr7A.!!$R1 4364
1 TraesCS7A01G359800 chr7A 565439077 565439945 868 False 1122.000000 1122 90.057000 3415 4281 1 chr7A.!!$F2 866
2 TraesCS7A01G359800 chr7A 533596537 533601227 4690 True 561.666667 778 87.144167 30 3006 6 chr7A.!!$R2 2976
3 TraesCS7A01G359800 chr7D 467156468 467162403 5935 False 931.400000 1676 92.695200 110 4365 5 chr7D.!!$F3 4255
4 TraesCS7A01G359800 chr7D 467041017 467044340 3323 False 364.483333 652 91.288167 268 3195 6 chr7D.!!$F2 2927
5 TraesCS7A01G359800 chr7B 490673452 490681607 8155 False 1011.400000 1607 90.555600 973 4365 5 chr7B.!!$F1 3392
6 TraesCS7A01G359800 chr6A 68977225 68978085 860 True 1070.000000 1070 89.143000 3415 4281 1 chr6A.!!$R1 866
7 TraesCS7A01G359800 chr1A 543393856 543395589 1733 True 304.000000 399 92.285500 3893 4279 2 chr1A.!!$R2 386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 308 0.103208 CCAACGGAGGAGGAGAATCG 59.897 60.0 0.0 0.00 34.37 3.34 F
352 424 0.108424 CAGCAGACGAGGAAGGAAGG 60.108 60.0 0.0 0.00 0.00 3.46 F
825 898 0.109723 CCCTGAAACTCCCGGTGAAA 59.890 55.0 0.0 0.00 0.00 2.69 F
975 1048 0.179000 CCCATTCCTCCGAGAACTGG 59.821 60.0 0.0 0.51 0.00 4.00 F
976 1049 0.179000 CCATTCCTCCGAGAACTGGG 59.821 60.0 0.0 0.00 0.00 4.45 F
1843 3832 0.248012 TAATCGAGCCAACAAGCGGA 59.752 50.0 0.0 0.00 38.01 5.54 F
2945 5630 0.249447 TGCTTGTCGGCATATCCTCG 60.249 55.0 0.0 0.00 37.29 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 3511 0.108138 ATCTAGGAACTGCACACCGC 60.108 55.000 0.00 0.00 41.52 5.68 R
1991 3980 0.688487 TTGTGACCGTTTCTAGGGGG 59.312 55.000 0.00 0.00 33.51 5.40 R
2451 4868 2.661718 GGGTCCTGAAGTTTGTTCCAA 58.338 47.619 0.00 0.00 0.00 3.53 R
2930 5615 1.456892 ACCCGAGGATATGCCGACA 60.457 57.895 6.66 0.00 43.43 4.35 R
2945 5630 4.683334 GCAGCGACGTTTGCACCC 62.683 66.667 17.63 0.83 40.02 4.61 R
3178 5864 2.231964 GAGCTGCCCATGACATCAAAAA 59.768 45.455 0.00 0.00 0.00 1.94 R
4082 10096 0.318955 CAAGTTTTCTGCGCCCCTTG 60.319 55.000 4.18 4.26 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.611374 ACATTCTTGTATTATGGGACGGAG 58.389 41.667 0.00 0.00 33.16 4.63
25 26 4.682778 TTCTTGTATTATGGGACGGAGG 57.317 45.455 0.00 0.00 0.00 4.30
26 27 2.969950 TCTTGTATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
27 28 2.779429 TGTATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
28 29 2.605257 TGTATTATGGGACGGAGGGAG 58.395 52.381 0.00 0.00 0.00 4.30
49 50 6.431234 GGGAGTACAAGATTATTAATGGCAGG 59.569 42.308 0.00 0.00 0.00 4.85
50 51 6.998673 GGAGTACAAGATTATTAATGGCAGGT 59.001 38.462 0.00 0.00 0.00 4.00
55 56 5.779529 AGATTATTAATGGCAGGTGCAAG 57.220 39.130 4.01 0.00 44.36 4.01
91 92 8.862325 ACAACATTTAGACATATGAACCTCAA 57.138 30.769 10.38 2.26 0.00 3.02
94 95 7.341805 ACATTTAGACATATGAACCTCAAGCT 58.658 34.615 10.38 0.00 0.00 3.74
109 116 4.279169 CCTCAAGCTGGAAATTGTTTCTCA 59.721 41.667 0.00 0.00 39.59 3.27
148 155 2.795175 ATTGGCCGACATACTCGTAG 57.205 50.000 0.00 0.00 41.18 3.51
237 281 2.361737 GAAGGGAAGGCACAGGGC 60.362 66.667 0.00 0.00 43.74 5.19
247 291 4.722700 CACAGGGCCCAACGGAGG 62.723 72.222 27.56 6.39 0.00 4.30
257 308 0.103208 CCAACGGAGGAGGAGAATCG 59.897 60.000 0.00 0.00 34.37 3.34
310 377 2.280524 AAACCAGCAGCGCGTGTA 60.281 55.556 8.43 0.00 0.00 2.90
352 424 0.108424 CAGCAGACGAGGAAGGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
355 427 1.404851 GCAGACGAGGAAGGAAGGAAG 60.405 57.143 0.00 0.00 0.00 3.46
356 428 0.899019 AGACGAGGAAGGAAGGAAGC 59.101 55.000 0.00 0.00 0.00 3.86
357 429 0.608640 GACGAGGAAGGAAGGAAGCA 59.391 55.000 0.00 0.00 0.00 3.91
358 430 1.002087 GACGAGGAAGGAAGGAAGCAA 59.998 52.381 0.00 0.00 0.00 3.91
359 431 1.002544 ACGAGGAAGGAAGGAAGCAAG 59.997 52.381 0.00 0.00 0.00 4.01
360 432 1.458398 GAGGAAGGAAGGAAGCAAGC 58.542 55.000 0.00 0.00 0.00 4.01
417 490 2.423446 CTGAGGGCGGATGGCTAC 59.577 66.667 0.00 0.00 42.94 3.58
422 495 0.679960 AGGGCGGATGGCTACAAAAC 60.680 55.000 0.00 0.00 42.94 2.43
623 696 4.034258 CTGGGCGTTGCACTGCTG 62.034 66.667 9.04 0.00 30.56 4.41
628 701 4.034258 CGTTGCACTGCTGCCCTG 62.034 66.667 1.98 0.00 43.51 4.45
629 702 3.677648 GTTGCACTGCTGCCCTGG 61.678 66.667 1.98 0.00 43.51 4.45
650 723 2.679996 GGCGCTCCCCAACCAAAT 60.680 61.111 7.64 0.00 0.00 2.32
651 724 2.710902 GGCGCTCCCCAACCAAATC 61.711 63.158 7.64 0.00 0.00 2.17
655 728 0.247460 GCTCCCCAACCAAATCAAGC 59.753 55.000 0.00 0.00 0.00 4.01
657 730 1.969923 CTCCCCAACCAAATCAAGCAA 59.030 47.619 0.00 0.00 0.00 3.91
660 733 2.104622 CCCCAACCAAATCAAGCAAACT 59.895 45.455 0.00 0.00 0.00 2.66
661 734 3.433456 CCCCAACCAAATCAAGCAAACTT 60.433 43.478 0.00 0.00 36.19 2.66
662 735 4.198530 CCCAACCAAATCAAGCAAACTTT 58.801 39.130 0.00 0.00 32.29 2.66
663 736 4.639755 CCCAACCAAATCAAGCAAACTTTT 59.360 37.500 0.00 0.00 32.29 2.27
665 738 5.353678 CCAACCAAATCAAGCAAACTTTTGA 59.646 36.000 5.87 0.00 40.55 2.69
666 739 6.128063 CCAACCAAATCAAGCAAACTTTTGAA 60.128 34.615 5.87 0.00 40.55 2.69
667 740 6.667007 ACCAAATCAAGCAAACTTTTGAAG 57.333 33.333 5.87 0.00 40.55 3.02
671 744 7.396419 CAAATCAAGCAAACTTTTGAAGTCTG 58.604 34.615 5.87 0.00 41.91 3.51
672 745 5.643379 TCAAGCAAACTTTTGAAGTCTGT 57.357 34.783 5.87 0.00 41.91 3.41
673 746 6.024552 TCAAGCAAACTTTTGAAGTCTGTT 57.975 33.333 5.87 0.00 41.91 3.16
674 747 7.151999 TCAAGCAAACTTTTGAAGTCTGTTA 57.848 32.000 5.87 0.00 41.91 2.41
675 748 7.598278 TCAAGCAAACTTTTGAAGTCTGTTAA 58.402 30.769 5.87 0.00 41.91 2.01
676 749 7.754924 TCAAGCAAACTTTTGAAGTCTGTTAAG 59.245 33.333 5.87 0.00 41.91 1.85
677 750 7.158099 AGCAAACTTTTGAAGTCTGTTAAGT 57.842 32.000 5.87 0.00 41.91 2.24
678 751 7.602753 AGCAAACTTTTGAAGTCTGTTAAGTT 58.397 30.769 5.87 0.00 41.91 2.66
681 754 6.359480 ACTTTTGAAGTCTGTTAAGTTCGG 57.641 37.500 0.00 0.00 37.02 4.30
683 756 6.373495 ACTTTTGAAGTCTGTTAAGTTCGGTT 59.627 34.615 0.00 0.00 37.02 4.44
684 757 6.746745 TTTGAAGTCTGTTAAGTTCGGTTT 57.253 33.333 0.00 0.00 32.30 3.27
686 759 8.441312 TTTGAAGTCTGTTAAGTTCGGTTTAT 57.559 30.769 0.00 0.00 32.30 1.40
687 760 7.416154 TGAAGTCTGTTAAGTTCGGTTTATG 57.584 36.000 0.00 0.00 32.30 1.90
689 762 4.694037 AGTCTGTTAAGTTCGGTTTATGCC 59.306 41.667 0.00 0.00 0.00 4.40
691 764 5.123344 GTCTGTTAAGTTCGGTTTATGCCAT 59.877 40.000 0.00 0.00 0.00 4.40
692 765 5.708230 TCTGTTAAGTTCGGTTTATGCCATT 59.292 36.000 0.00 0.00 0.00 3.16
694 767 6.844254 TGTTAAGTTCGGTTTATGCCATTAC 58.156 36.000 0.00 0.00 0.00 1.89
698 771 4.638865 AGTTCGGTTTATGCCATTACTTCC 59.361 41.667 0.00 0.00 0.00 3.46
699 772 4.223556 TCGGTTTATGCCATTACTTCCA 57.776 40.909 0.00 0.00 0.00 3.53
700 773 4.590918 TCGGTTTATGCCATTACTTCCAA 58.409 39.130 0.00 0.00 0.00 3.53
701 774 5.197451 TCGGTTTATGCCATTACTTCCAAT 58.803 37.500 0.00 0.00 0.00 3.16
702 775 5.067153 TCGGTTTATGCCATTACTTCCAATG 59.933 40.000 0.00 0.00 35.97 2.82
717 790 5.499004 TTCCAATGGAAGCTACTGTACTT 57.501 39.130 11.23 3.42 36.71 2.24
718 791 5.499004 TCCAATGGAAGCTACTGTACTTT 57.501 39.130 0.00 0.00 0.00 2.66
719 792 6.614694 TCCAATGGAAGCTACTGTACTTTA 57.385 37.500 0.00 0.00 0.00 1.85
720 793 7.195374 TCCAATGGAAGCTACTGTACTTTAT 57.805 36.000 0.00 2.17 0.00 1.40
721 794 7.630082 TCCAATGGAAGCTACTGTACTTTATT 58.370 34.615 0.00 6.21 0.00 1.40
722 795 7.769044 TCCAATGGAAGCTACTGTACTTTATTC 59.231 37.037 0.00 0.00 0.00 1.75
723 796 7.770897 CCAATGGAAGCTACTGTACTTTATTCT 59.229 37.037 0.00 0.00 0.00 2.40
724 797 8.607459 CAATGGAAGCTACTGTACTTTATTCTG 58.393 37.037 0.00 0.00 0.00 3.02
725 798 7.476540 TGGAAGCTACTGTACTTTATTCTGA 57.523 36.000 0.00 0.00 0.00 3.27
727 800 7.817962 TGGAAGCTACTGTACTTTATTCTGAAC 59.182 37.037 0.00 0.00 0.00 3.18
728 801 8.035984 GGAAGCTACTGTACTTTATTCTGAACT 58.964 37.037 0.00 0.00 0.00 3.01
746 819 8.848474 TCTGAACTTTAAAGGGTATTCTGAAG 57.152 34.615 19.14 7.64 0.00 3.02
747 820 7.883311 TCTGAACTTTAAAGGGTATTCTGAAGG 59.117 37.037 19.14 4.67 0.00 3.46
748 821 7.523415 TGAACTTTAAAGGGTATTCTGAAGGT 58.477 34.615 19.14 0.00 0.00 3.50
749 822 7.447238 TGAACTTTAAAGGGTATTCTGAAGGTG 59.553 37.037 19.14 0.00 0.00 4.00
751 824 7.981142 ACTTTAAAGGGTATTCTGAAGGTGTA 58.019 34.615 19.14 0.00 0.00 2.90
752 825 8.612145 ACTTTAAAGGGTATTCTGAAGGTGTAT 58.388 33.333 19.14 0.00 0.00 2.29
753 826 9.110502 CTTTAAAGGGTATTCTGAAGGTGTATC 57.889 37.037 7.37 0.00 0.00 2.24
754 827 6.893020 AAAGGGTATTCTGAAGGTGTATCT 57.107 37.500 0.00 0.00 0.00 1.98
755 828 6.487299 AAGGGTATTCTGAAGGTGTATCTC 57.513 41.667 0.00 0.00 0.00 2.75
757 830 5.964477 AGGGTATTCTGAAGGTGTATCTCAA 59.036 40.000 0.00 0.00 0.00 3.02
758 831 6.443849 AGGGTATTCTGAAGGTGTATCTCAAA 59.556 38.462 0.00 0.00 0.00 2.69
759 832 6.539103 GGGTATTCTGAAGGTGTATCTCAAAC 59.461 42.308 0.00 0.00 0.00 2.93
760 833 6.539103 GGTATTCTGAAGGTGTATCTCAAACC 59.461 42.308 0.00 0.00 0.00 3.27
762 835 3.576982 TCTGAAGGTGTATCTCAAACCGT 59.423 43.478 0.00 0.00 39.07 4.83
763 836 3.659786 TGAAGGTGTATCTCAAACCGTG 58.340 45.455 0.00 0.00 39.07 4.94
764 837 3.070446 TGAAGGTGTATCTCAAACCGTGT 59.930 43.478 0.00 0.00 39.07 4.49
766 839 3.399330 AGGTGTATCTCAAACCGTGTTG 58.601 45.455 0.00 0.00 39.07 3.33
767 840 2.482721 GGTGTATCTCAAACCGTGTTGG 59.517 50.000 0.00 0.00 46.41 3.77
769 842 2.105134 TGTATCTCAAACCGTGTTGGGT 59.895 45.455 0.00 0.00 42.41 4.51
776 849 1.813192 ACCGTGTTGGGTTTTGCAG 59.187 52.632 0.00 0.00 44.64 4.41
777 850 0.968393 ACCGTGTTGGGTTTTGCAGT 60.968 50.000 0.00 0.00 44.64 4.40
778 851 1.025812 CCGTGTTGGGTTTTGCAGTA 58.974 50.000 0.00 0.00 0.00 2.74
779 852 1.001815 CCGTGTTGGGTTTTGCAGTAG 60.002 52.381 0.00 0.00 0.00 2.57
780 853 1.599419 CGTGTTGGGTTTTGCAGTAGC 60.599 52.381 0.00 0.00 42.57 3.58
781 854 1.036707 TGTTGGGTTTTGCAGTAGCC 58.963 50.000 10.47 10.47 41.13 3.93
783 856 1.175983 TTGGGTTTTGCAGTAGCCCG 61.176 55.000 15.06 0.00 42.10 6.13
785 858 0.321830 GGGTTTTGCAGTAGCCCGTA 60.322 55.000 7.00 0.00 41.13 4.02
786 859 1.084289 GGTTTTGCAGTAGCCCGTAG 58.916 55.000 0.00 0.00 41.13 3.51
788 861 2.000447 GTTTTGCAGTAGCCCGTAGAG 59.000 52.381 0.00 0.00 41.13 2.43
789 862 1.552578 TTTGCAGTAGCCCGTAGAGA 58.447 50.000 0.00 0.00 41.13 3.10
791 864 1.319541 TGCAGTAGCCCGTAGAGATC 58.680 55.000 0.00 0.00 41.13 2.75
792 865 1.133761 TGCAGTAGCCCGTAGAGATCT 60.134 52.381 0.00 0.00 41.13 2.75
793 866 1.957877 GCAGTAGCCCGTAGAGATCTT 59.042 52.381 0.00 0.00 33.58 2.40
794 867 2.030628 GCAGTAGCCCGTAGAGATCTTC 60.031 54.545 0.00 0.00 33.58 2.87
798 871 1.063567 AGCCCGTAGAGATCTTCAGGT 60.064 52.381 0.00 0.00 0.00 4.00
799 872 2.175069 AGCCCGTAGAGATCTTCAGGTA 59.825 50.000 0.00 0.00 0.00 3.08
800 873 3.158676 GCCCGTAGAGATCTTCAGGTAT 58.841 50.000 0.00 0.00 0.00 2.73
801 874 3.574826 GCCCGTAGAGATCTTCAGGTATT 59.425 47.826 0.00 0.00 0.00 1.89
802 875 4.321378 GCCCGTAGAGATCTTCAGGTATTC 60.321 50.000 0.00 0.00 0.00 1.75
804 877 5.048364 CCCGTAGAGATCTTCAGGTATTCAG 60.048 48.000 0.00 0.00 0.00 3.02
805 878 5.765677 CCGTAGAGATCTTCAGGTATTCAGA 59.234 44.000 0.00 0.00 0.00 3.27
806 879 6.293735 CCGTAGAGATCTTCAGGTATTCAGAC 60.294 46.154 0.00 0.00 0.00 3.51
807 880 6.293735 CGTAGAGATCTTCAGGTATTCAGACC 60.294 46.154 0.00 0.00 40.08 3.85
809 882 4.889780 AGATCTTCAGGTATTCAGACCCT 58.110 43.478 0.00 0.00 40.74 4.34
810 883 4.653341 AGATCTTCAGGTATTCAGACCCTG 59.347 45.833 0.00 0.00 45.81 4.45
819 892 0.685097 TTCAGACCCTGAAACTCCCG 59.315 55.000 6.91 0.00 45.84 5.14
820 893 1.192146 TCAGACCCTGAAACTCCCGG 61.192 60.000 0.00 0.00 37.57 5.73
824 897 1.057851 ACCCTGAAACTCCCGGTGAA 61.058 55.000 0.00 0.00 0.00 3.18
825 898 0.109723 CCCTGAAACTCCCGGTGAAA 59.890 55.000 0.00 0.00 0.00 2.69
826 899 1.271926 CCCTGAAACTCCCGGTGAAAT 60.272 52.381 0.00 0.00 0.00 2.17
827 900 2.084546 CCTGAAACTCCCGGTGAAATC 58.915 52.381 0.00 0.00 0.00 2.17
828 901 2.084546 CTGAAACTCCCGGTGAAATCC 58.915 52.381 0.00 0.00 0.00 3.01
836 909 3.604130 CGGTGAAATCCGTTGCATC 57.396 52.632 0.00 0.00 44.77 3.91
837 910 0.801872 CGGTGAAATCCGTTGCATCA 59.198 50.000 0.00 0.00 44.77 3.07
838 911 1.198867 CGGTGAAATCCGTTGCATCAA 59.801 47.619 0.00 0.00 44.77 2.57
839 912 2.351253 CGGTGAAATCCGTTGCATCAAA 60.351 45.455 0.00 0.00 44.77 2.69
840 913 3.648009 GGTGAAATCCGTTGCATCAAAA 58.352 40.909 0.00 0.00 0.00 2.44
841 914 4.244862 GGTGAAATCCGTTGCATCAAAAT 58.755 39.130 0.00 0.00 0.00 1.82
842 915 4.690280 GGTGAAATCCGTTGCATCAAAATT 59.310 37.500 0.00 0.00 0.00 1.82
844 917 4.152045 TGAAATCCGTTGCATCAAAATTGC 59.848 37.500 0.00 0.00 40.55 3.56
845 918 2.077413 TCCGTTGCATCAAAATTGCC 57.923 45.000 0.00 0.00 39.39 4.52
846 919 1.342496 TCCGTTGCATCAAAATTGCCA 59.658 42.857 0.00 0.00 39.39 4.92
847 920 1.460359 CCGTTGCATCAAAATTGCCAC 59.540 47.619 0.00 0.00 39.39 5.01
848 921 2.133553 CGTTGCATCAAAATTGCCACA 58.866 42.857 0.00 0.00 39.39 4.17
850 923 1.780806 TGCATCAAAATTGCCACACG 58.219 45.000 0.00 0.00 39.39 4.49
851 924 1.068281 TGCATCAAAATTGCCACACGT 59.932 42.857 0.00 0.00 39.39 4.49
852 925 1.456544 GCATCAAAATTGCCACACGTG 59.543 47.619 15.48 15.48 33.95 4.49
853 926 2.861750 GCATCAAAATTGCCACACGTGA 60.862 45.455 25.01 0.00 33.95 4.35
854 927 3.379240 CATCAAAATTGCCACACGTGAA 58.621 40.909 25.01 6.16 0.00 3.18
855 928 3.724508 TCAAAATTGCCACACGTGAAT 57.275 38.095 25.01 8.56 0.00 2.57
856 929 4.052159 TCAAAATTGCCACACGTGAATT 57.948 36.364 25.01 14.45 0.00 2.17
857 930 4.437239 TCAAAATTGCCACACGTGAATTT 58.563 34.783 25.01 19.35 32.11 1.82
862 935 3.281341 TGCCACACGTGAATTTCATTC 57.719 42.857 25.01 1.19 39.70 2.67
863 936 2.884012 TGCCACACGTGAATTTCATTCT 59.116 40.909 25.01 0.00 39.96 2.40
864 937 3.317711 TGCCACACGTGAATTTCATTCTT 59.682 39.130 25.01 0.00 39.96 2.52
865 938 3.670055 GCCACACGTGAATTTCATTCTTG 59.330 43.478 25.01 4.92 39.96 3.02
867 940 4.539870 CACACGTGAATTTCATTCTTGCT 58.460 39.130 25.01 0.00 39.96 3.91
868 941 5.334802 CCACACGTGAATTTCATTCTTGCTA 60.335 40.000 25.01 0.00 39.96 3.49
869 942 5.791974 CACACGTGAATTTCATTCTTGCTAG 59.208 40.000 25.01 0.00 39.96 3.42
871 944 6.128445 ACACGTGAATTTCATTCTTGCTAGAG 60.128 38.462 25.01 0.00 39.96 2.43
872 945 5.352569 ACGTGAATTTCATTCTTGCTAGAGG 59.647 40.000 1.78 0.00 39.96 3.69
877 950 7.231317 TGAATTTCATTCTTGCTAGAGGTTGTT 59.769 33.333 0.00 0.00 39.96 2.83
878 951 5.947228 TTCATTCTTGCTAGAGGTTGTTG 57.053 39.130 0.00 0.00 0.00 3.33
880 953 2.859165 TCTTGCTAGAGGTTGTTGGG 57.141 50.000 0.00 0.00 0.00 4.12
881 954 2.334977 TCTTGCTAGAGGTTGTTGGGA 58.665 47.619 0.00 0.00 0.00 4.37
882 955 2.038557 TCTTGCTAGAGGTTGTTGGGAC 59.961 50.000 0.00 0.00 0.00 4.46
883 956 1.429930 TGCTAGAGGTTGTTGGGACA 58.570 50.000 0.00 0.00 0.00 4.02
901 974 4.949856 GGGACAAGTACATCATGGTTGATT 59.050 41.667 0.00 0.00 40.70 2.57
902 975 5.418840 GGGACAAGTACATCATGGTTGATTT 59.581 40.000 0.00 0.00 40.70 2.17
903 976 6.601613 GGGACAAGTACATCATGGTTGATTTA 59.398 38.462 0.00 0.00 40.70 1.40
905 978 8.345565 GGACAAGTACATCATGGTTGATTTATC 58.654 37.037 0.00 0.00 40.70 1.75
906 979 9.113838 GACAAGTACATCATGGTTGATTTATCT 57.886 33.333 0.00 0.00 40.70 1.98
919 992 9.559732 TGGTTGATTTATCTATTGTATGGAGTG 57.440 33.333 0.00 0.00 0.00 3.51
920 993 9.778741 GGTTGATTTATCTATTGTATGGAGTGA 57.221 33.333 0.00 0.00 0.00 3.41
923 996 9.987272 TGATTTATCTATTGTATGGAGTGACAG 57.013 33.333 0.00 0.00 0.00 3.51
924 997 8.839310 ATTTATCTATTGTATGGAGTGACAGC 57.161 34.615 0.00 0.00 0.00 4.40
925 998 5.876651 ATCTATTGTATGGAGTGACAGCA 57.123 39.130 0.00 0.00 0.00 4.41
926 999 5.675684 TCTATTGTATGGAGTGACAGCAA 57.324 39.130 0.00 0.00 0.00 3.91
927 1000 6.048732 TCTATTGTATGGAGTGACAGCAAA 57.951 37.500 0.00 0.00 0.00 3.68
928 1001 6.108687 TCTATTGTATGGAGTGACAGCAAAG 58.891 40.000 0.00 0.00 0.00 2.77
929 1002 4.350368 TTGTATGGAGTGACAGCAAAGA 57.650 40.909 0.00 0.00 0.00 2.52
930 1003 3.664107 TGTATGGAGTGACAGCAAAGAC 58.336 45.455 0.00 0.00 0.00 3.01
932 1005 2.245159 TGGAGTGACAGCAAAGACAG 57.755 50.000 0.00 0.00 0.00 3.51
933 1006 1.762370 TGGAGTGACAGCAAAGACAGA 59.238 47.619 0.00 0.00 0.00 3.41
934 1007 2.170397 TGGAGTGACAGCAAAGACAGAA 59.830 45.455 0.00 0.00 0.00 3.02
935 1008 2.545946 GGAGTGACAGCAAAGACAGAAC 59.454 50.000 0.00 0.00 0.00 3.01
936 1009 2.545946 GAGTGACAGCAAAGACAGAACC 59.454 50.000 0.00 0.00 0.00 3.62
938 1011 1.134521 TGACAGCAAAGACAGAACCGT 60.135 47.619 0.00 0.00 0.00 4.83
939 1012 2.101750 TGACAGCAAAGACAGAACCGTA 59.898 45.455 0.00 0.00 0.00 4.02
941 1014 2.159014 ACAGCAAAGACAGAACCGTACA 60.159 45.455 0.00 0.00 0.00 2.90
943 1016 3.498397 CAGCAAAGACAGAACCGTACAAT 59.502 43.478 0.00 0.00 0.00 2.71
944 1017 4.688879 CAGCAAAGACAGAACCGTACAATA 59.311 41.667 0.00 0.00 0.00 1.90
947 1020 6.430000 AGCAAAGACAGAACCGTACAATAATT 59.570 34.615 0.00 0.00 0.00 1.40
948 1021 6.523201 GCAAAGACAGAACCGTACAATAATTG 59.477 38.462 0.00 0.00 0.00 2.32
950 1023 8.714179 CAAAGACAGAACCGTACAATAATTGTA 58.286 33.333 0.00 0.00 43.27 2.41
951 1024 9.444600 AAAGACAGAACCGTACAATAATTGTAT 57.555 29.630 0.00 0.00 46.73 2.29
957 1030 9.485206 AGAACCGTACAATAATTGTATATGTCC 57.515 33.333 0.00 0.00 46.73 4.02
958 1031 8.611654 AACCGTACAATAATTGTATATGTCCC 57.388 34.615 0.00 0.00 46.73 4.46
959 1032 7.737869 ACCGTACAATAATTGTATATGTCCCA 58.262 34.615 0.00 0.00 46.73 4.37
960 1033 8.380099 ACCGTACAATAATTGTATATGTCCCAT 58.620 33.333 0.00 0.00 46.73 4.00
961 1034 9.226606 CCGTACAATAATTGTATATGTCCCATT 57.773 33.333 0.00 0.00 46.73 3.16
965 1038 9.520515 ACAATAATTGTATATGTCCCATTCCTC 57.479 33.333 0.00 0.00 43.27 3.71
966 1039 8.960591 CAATAATTGTATATGTCCCATTCCTCC 58.039 37.037 0.00 0.00 0.00 4.30
967 1040 4.617253 TTGTATATGTCCCATTCCTCCG 57.383 45.455 0.00 0.00 0.00 4.63
968 1041 3.851979 TGTATATGTCCCATTCCTCCGA 58.148 45.455 0.00 0.00 0.00 4.55
969 1042 3.832490 TGTATATGTCCCATTCCTCCGAG 59.168 47.826 0.00 0.00 0.00 4.63
970 1043 2.767644 TATGTCCCATTCCTCCGAGA 57.232 50.000 0.00 0.00 0.00 4.04
972 1045 0.902531 TGTCCCATTCCTCCGAGAAC 59.097 55.000 0.00 0.00 0.00 3.01
974 1047 1.134670 GTCCCATTCCTCCGAGAACTG 60.135 57.143 0.00 0.00 0.00 3.16
975 1048 0.179000 CCCATTCCTCCGAGAACTGG 59.821 60.000 0.00 0.51 0.00 4.00
976 1049 0.179000 CCATTCCTCCGAGAACTGGG 59.821 60.000 0.00 0.00 0.00 4.45
977 1050 1.195115 CATTCCTCCGAGAACTGGGA 58.805 55.000 5.53 5.53 36.07 4.37
978 1051 1.134670 CATTCCTCCGAGAACTGGGAC 60.135 57.143 1.56 0.00 33.76 4.46
983 2829 0.251033 TCCGAGAACTGGGACGAGAA 60.251 55.000 1.56 0.00 32.32 2.87
986 2832 1.666311 CGAGAACTGGGACGAGAACAC 60.666 57.143 0.00 0.00 0.00 3.32
994 2840 1.301479 GACGAGAACACCACCCACC 60.301 63.158 0.00 0.00 0.00 4.61
995 2841 2.032071 CGAGAACACCACCCACCC 59.968 66.667 0.00 0.00 0.00 4.61
996 2842 2.032071 GAGAACACCACCCACCCG 59.968 66.667 0.00 0.00 0.00 5.28
997 2843 2.446994 AGAACACCACCCACCCGA 60.447 61.111 0.00 0.00 0.00 5.14
1001 2856 2.052047 AACACCACCCACCCGAAGAG 62.052 60.000 0.00 0.00 0.00 2.85
1003 2858 1.460689 ACCACCCACCCGAAGAGAA 60.461 57.895 0.00 0.00 0.00 2.87
1006 2861 0.685097 CACCCACCCGAAGAGAAAGA 59.315 55.000 0.00 0.00 0.00 2.52
1036 2891 2.270527 GCTGTGGAGGAAGAGGGC 59.729 66.667 0.00 0.00 0.00 5.19
1037 2892 2.993853 CTGTGGAGGAAGAGGGCC 59.006 66.667 0.00 0.00 0.00 5.80
1066 2921 0.856982 TCCCATCTCTCCTCTCCTCC 59.143 60.000 0.00 0.00 0.00 4.30
1067 2922 0.539438 CCCATCTCTCCTCTCCTCCG 60.539 65.000 0.00 0.00 0.00 4.63
1068 2923 0.539438 CCATCTCTCCTCTCCTCCGG 60.539 65.000 0.00 0.00 0.00 5.14
1069 2924 0.539438 CATCTCTCCTCTCCTCCGGG 60.539 65.000 0.00 0.00 0.00 5.73
1070 2925 1.725169 ATCTCTCCTCTCCTCCGGGG 61.725 65.000 0.00 0.00 0.00 5.73
1071 2926 2.286962 TCTCCTCTCCTCCGGGGA 60.287 66.667 0.37 7.28 42.77 4.81
1134 2992 2.166907 TGTCTCCCCTCCTCATCTTC 57.833 55.000 0.00 0.00 0.00 2.87
1139 2997 0.758123 CCCCTCCTCATCTTCTGCTC 59.242 60.000 0.00 0.00 0.00 4.26
1157 3016 2.817844 GCTCCGAAACAAGGTTTATGGT 59.182 45.455 10.53 0.00 0.00 3.55
1166 3025 4.642429 ACAAGGTTTATGGTGTCTCAGTC 58.358 43.478 0.00 0.00 0.00 3.51
1171 3030 4.262894 GGTTTATGGTGTCTCAGTCTTGGA 60.263 45.833 0.00 0.00 0.00 3.53
1200 3059 2.114670 GGATGTGGATGTGCGTGGG 61.115 63.158 0.00 0.00 0.00 4.61
1214 3082 0.734889 CGTGGGCTCCATTGTCAATC 59.265 55.000 0.00 0.00 35.28 2.67
1227 3095 5.220739 CCATTGTCAATCTCGGTGAAGATTC 60.221 44.000 0.00 0.00 42.68 2.52
1271 3140 5.450550 GGCACAAGAGGGTTATATTTCTTGC 60.451 44.000 11.72 1.77 46.47 4.01
1319 3189 4.162320 TCTTGACAGGGAATAGCCAGTTAG 59.838 45.833 0.00 0.00 38.95 2.34
1339 3211 1.160137 GCACAGGTCTTGCTTGGTAG 58.840 55.000 0.00 0.00 37.00 3.18
1347 3227 1.839994 TCTTGCTTGGTAGGGATCAGG 59.160 52.381 0.00 0.00 0.00 3.86
1370 3250 6.556116 AGGAGGCCTGCATTTAAATCATTTAT 59.444 34.615 27.56 0.00 29.57 1.40
1372 3252 7.716560 GGAGGCCTGCATTTAAATCATTTATTT 59.283 33.333 20.97 0.00 40.87 1.40
1373 3253 9.762933 GAGGCCTGCATTTAAATCATTTATTTA 57.237 29.630 12.00 0.00 38.71 1.40
1374 3254 9.546428 AGGCCTGCATTTAAATCATTTATTTAC 57.454 29.630 3.11 0.00 39.28 2.01
1375 3255 9.546428 GGCCTGCATTTAAATCATTTATTTACT 57.454 29.630 0.00 0.00 39.28 2.24
1394 3301 8.691661 ATTTACTTATATGGTGGCCTACTTTG 57.308 34.615 3.32 0.00 0.00 2.77
1416 3323 6.757897 TGTATTTTTGTTCAGCTCATAGGG 57.242 37.500 0.00 0.00 0.00 3.53
1558 3466 2.028733 GCGCCAATGCAACCCTTTG 61.029 57.895 0.00 0.00 37.32 2.77
1604 3512 9.010366 GGTTCATTTCTTGAATTTATAAGTCGC 57.990 33.333 0.00 0.00 45.77 5.19
1631 3541 5.806654 TGCAGTTCCTAGATGCATATACA 57.193 39.130 0.00 0.00 44.56 2.29
1632 3542 6.364568 TGCAGTTCCTAGATGCATATACAT 57.635 37.500 0.00 0.00 44.56 2.29
1633 3543 6.401394 TGCAGTTCCTAGATGCATATACATC 58.599 40.000 7.74 7.74 44.56 3.06
1709 3669 5.163581 ACTGTGATGATGCTCCTATTTTTGC 60.164 40.000 0.00 0.00 0.00 3.68
1716 3676 5.243507 TGATGCTCCTATTTTTGCAGTGAAA 59.756 36.000 0.00 0.00 38.87 2.69
1763 3750 1.269206 ACCAGAGTGCGTGCAATTTTG 60.269 47.619 0.00 0.00 0.00 2.44
1843 3832 0.248012 TAATCGAGCCAACAAGCGGA 59.752 50.000 0.00 0.00 38.01 5.54
1874 3863 3.342377 TTGGAATGGTGTTCATCGCTA 57.658 42.857 0.00 0.00 34.44 4.26
1963 3952 3.960102 TGAGATTTTTGGGTGCTGAACTT 59.040 39.130 0.00 0.00 0.00 2.66
1988 3977 4.223032 TCTTAACAGGTGAGAACCAGGATC 59.777 45.833 0.00 0.00 0.00 3.36
1989 3978 1.280457 ACAGGTGAGAACCAGGATCC 58.720 55.000 2.48 2.48 0.00 3.36
1990 3979 0.543749 CAGGTGAGAACCAGGATCCC 59.456 60.000 8.55 0.00 0.00 3.85
1991 3980 0.621862 AGGTGAGAACCAGGATCCCC 60.622 60.000 8.55 0.00 0.00 4.81
2009 4008 2.368591 CCCCCTAGAAACGGTCACA 58.631 57.895 0.00 0.00 0.00 3.58
2079 4088 6.899089 TGCTCTTCCATCATCTAACCAAATA 58.101 36.000 0.00 0.00 0.00 1.40
2080 4089 6.994496 TGCTCTTCCATCATCTAACCAAATAG 59.006 38.462 0.00 0.00 0.00 1.73
2081 4090 6.995091 GCTCTTCCATCATCTAACCAAATAGT 59.005 38.462 0.00 0.00 0.00 2.12
2083 4092 9.482627 CTCTTCCATCATCTAACCAAATAGTAC 57.517 37.037 0.00 0.00 0.00 2.73
2090 4099 7.363031 TCATCTAACCAAATAGTACTCCCTCT 58.637 38.462 0.00 0.00 0.00 3.69
2093 4102 7.645942 TCTAACCAAATAGTACTCCCTCTGTA 58.354 38.462 0.00 0.00 0.00 2.74
2094 4103 8.117956 TCTAACCAAATAGTACTCCCTCTGTAA 58.882 37.037 0.00 0.00 0.00 2.41
2097 4106 6.729569 ACCAAATAGTACTCCCTCTGTAAACT 59.270 38.462 0.00 0.00 0.00 2.66
2109 4118 9.680315 CTCCCTCTGTAAACTAATATAAGAACG 57.320 37.037 0.00 0.00 0.00 3.95
2111 4120 9.813446 CCCTCTGTAAACTAATATAAGAACGTT 57.187 33.333 0.00 0.00 0.00 3.99
2247 4300 6.071051 GGTTTAAAGGAATGATTGGCAAGGTA 60.071 38.462 5.96 0.00 0.00 3.08
2451 4868 9.423061 GCAACAGTTTACTCCATTATCATTTTT 57.577 29.630 0.00 0.00 0.00 1.94
2641 5075 7.612633 TGTAATTTCAGGTAATCCCTTAACCAC 59.387 37.037 0.00 0.00 42.73 4.16
2644 5078 4.172807 TCAGGTAATCCCTTAACCACACT 58.827 43.478 0.00 0.00 42.73 3.55
2663 5097 4.755123 ACACTATGTGGTGCTAGTTTCAAC 59.245 41.667 2.72 0.00 40.52 3.18
2665 5099 5.470098 CACTATGTGGTGCTAGTTTCAACTT 59.530 40.000 0.00 0.00 40.37 2.66
2666 5100 5.701290 ACTATGTGGTGCTAGTTTCAACTTC 59.299 40.000 0.00 0.00 40.37 3.01
2667 5101 4.150897 TGTGGTGCTAGTTTCAACTTCT 57.849 40.909 0.00 0.00 40.37 2.85
2668 5102 4.523083 TGTGGTGCTAGTTTCAACTTCTT 58.477 39.130 0.00 0.00 40.37 2.52
2669 5103 4.335315 TGTGGTGCTAGTTTCAACTTCTTG 59.665 41.667 0.00 0.00 40.37 3.02
2670 5104 4.335594 GTGGTGCTAGTTTCAACTTCTTGT 59.664 41.667 0.00 0.00 40.37 3.16
2671 5105 5.526111 GTGGTGCTAGTTTCAACTTCTTGTA 59.474 40.000 0.00 0.00 40.37 2.41
2893 5578 3.402681 CACGGAGGAGGCCATGGT 61.403 66.667 14.67 0.00 0.00 3.55
2945 5630 0.249447 TGCTTGTCGGCATATCCTCG 60.249 55.000 0.00 0.00 37.29 4.63
3031 5717 1.985473 TCATCTTTGCTGGCTGTGTT 58.015 45.000 0.00 0.00 0.00 3.32
3080 5766 2.202623 CGGCGAGAGAAGGGAACG 60.203 66.667 0.00 0.00 0.00 3.95
3094 5780 1.408822 GGGAACGAGGGCAAGATGATT 60.409 52.381 0.00 0.00 0.00 2.57
3115 5801 1.136828 TTACCATATTCCCCAGCGCT 58.863 50.000 2.64 2.64 0.00 5.92
3178 5864 5.222870 AGGGAGGAATGTGAGAATATGACT 58.777 41.667 0.00 0.00 0.00 3.41
3249 5935 2.469826 TGTGTTCGTAAGTGTCAGCAG 58.530 47.619 0.00 0.00 39.48 4.24
3261 5947 2.035961 GTGTCAGCAGAAGGTACAGTGA 59.964 50.000 0.00 0.00 0.00 3.41
3282 5968 5.009010 GTGAATCCTCTGTTCTTGCTTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
3283 5969 5.593909 TGAATCCTCTGTTCTTGCTTTTCAA 59.406 36.000 0.00 0.00 0.00 2.69
3352 6156 7.105241 ACAGGCTAATTGAATGGAAGAAATC 57.895 36.000 0.00 0.00 0.00 2.17
3379 6183 3.181456 GCTGATCTTCATAAGGGCACTCT 60.181 47.826 0.00 0.00 0.00 3.24
3409 6213 6.861065 TTCTTGTCCGGCTCAATAATTATC 57.139 37.500 11.20 0.00 0.00 1.75
3413 6217 9.031537 TCTTGTCCGGCTCAATAATTATCTATA 57.968 33.333 11.20 0.00 0.00 1.31
3565 8555 3.175710 ACCCTGTCCCCAAACGCT 61.176 61.111 0.00 0.00 0.00 5.07
3586 8576 0.241749 TGAAACACGTCTCCGCGTAT 59.758 50.000 4.92 0.00 43.83 3.06
3717 9174 4.097437 CACATTATCTGCCTGTCAAGCAAT 59.903 41.667 0.00 0.00 40.35 3.56
3768 9225 0.546988 GGTCCCAGTGGTAGAGGGTT 60.547 60.000 8.74 0.00 43.31 4.11
3779 9236 2.697229 GGTAGAGGGTTACATACGGCTT 59.303 50.000 0.00 0.00 0.00 4.35
3788 9245 4.202284 GGTTACATACGGCTTAATCCCTGA 60.202 45.833 0.00 0.00 0.00 3.86
3818 9278 9.582648 AAAAATACCAGTTCACCTTGTTAGTAT 57.417 29.630 0.00 0.00 0.00 2.12
3820 9280 4.906618 ACCAGTTCACCTTGTTAGTATGG 58.093 43.478 0.00 0.00 0.00 2.74
3895 9904 9.246670 TGGTCAATAATGTTTTGATCTTCAGAT 57.753 29.630 0.00 0.00 35.64 2.90
3950 9959 4.787551 TCAATGACCTTGTTGTAGTGGTT 58.212 39.130 0.00 0.00 36.20 3.67
3961 9970 1.089920 GTAGTGGTTGATGCCTGCTG 58.910 55.000 0.00 0.00 0.00 4.41
3977 9986 3.901797 CTGGGTTGACCTCACCGGC 62.902 68.421 0.00 0.00 41.11 6.13
3994 10004 1.388547 GGCGCCATCTGGACATAAAA 58.611 50.000 24.80 0.00 37.39 1.52
4016 10026 5.689383 AAACACACACAAGGCTATTACTG 57.311 39.130 0.00 0.00 0.00 2.74
4082 10096 7.770897 ACAACCCTGTCTATCAGTCAAATTATC 59.229 37.037 0.00 0.00 42.19 1.75
4093 10107 2.023673 TCAAATTATCAAGGGGCGCAG 58.976 47.619 10.83 0.00 0.00 5.18
4098 10112 1.459450 TATCAAGGGGCGCAGAAAAC 58.541 50.000 10.83 0.00 0.00 2.43
4104 10118 1.173913 GGGGCGCAGAAAACTTGTAT 58.826 50.000 10.83 0.00 0.00 2.29
4199 11555 2.235650 TGAGCTGAATGTCCTCCTGAAG 59.764 50.000 0.00 0.00 0.00 3.02
4218 11574 6.990349 CCTGAAGTAGTTAGTTGTTTCAAGGA 59.010 38.462 0.00 0.00 0.00 3.36
4272 11628 4.536364 AAACGCTCATGTTCATATTCGG 57.464 40.909 0.00 0.00 0.00 4.30
4287 11643 2.202690 CGGCGGCACATTCTACGA 60.203 61.111 10.53 0.00 0.00 3.43
4312 11668 9.430838 GAAATATTATGTATCATCTTGATGCGC 57.569 33.333 0.00 0.00 41.50 6.09
4320 11676 7.550712 TGTATCATCTTGATGCGCTAATCTAT 58.449 34.615 9.73 0.00 41.50 1.98
4321 11677 8.686334 TGTATCATCTTGATGCGCTAATCTATA 58.314 33.333 9.73 0.00 41.50 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.997395 CCTCCGTCCCATAATACAAGAATG 59.003 45.833 0.00 0.00 0.00 2.67
4 5 3.389983 CCCTCCGTCCCATAATACAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
6 7 2.969950 TCCCTCCGTCCCATAATACAAG 59.030 50.000 0.00 0.00 0.00 3.16
7 8 2.969950 CTCCCTCCGTCCCATAATACAA 59.030 50.000 0.00 0.00 0.00 2.41
8 9 2.090943 ACTCCCTCCGTCCCATAATACA 60.091 50.000 0.00 0.00 0.00 2.29
9 10 2.606378 ACTCCCTCCGTCCCATAATAC 58.394 52.381 0.00 0.00 0.00 1.89
10 11 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
11 12 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
12 13 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
13 14 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
17 18 1.777941 ATCTTGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
18 19 5.532664 AATAATCTTGTACTCCCTCCGTC 57.467 43.478 0.00 0.00 0.00 4.79
19 20 7.442656 CATTAATAATCTTGTACTCCCTCCGT 58.557 38.462 0.00 0.00 0.00 4.69
20 21 6.874134 CCATTAATAATCTTGTACTCCCTCCG 59.126 42.308 0.00 0.00 0.00 4.63
24 25 6.431234 CCTGCCATTAATAATCTTGTACTCCC 59.569 42.308 0.00 0.00 0.00 4.30
25 26 6.998673 ACCTGCCATTAATAATCTTGTACTCC 59.001 38.462 0.00 0.00 0.00 3.85
26 27 7.520614 GCACCTGCCATTAATAATCTTGTACTC 60.521 40.741 0.00 0.00 34.31 2.59
27 28 6.263168 GCACCTGCCATTAATAATCTTGTACT 59.737 38.462 0.00 0.00 34.31 2.73
28 29 6.039270 TGCACCTGCCATTAATAATCTTGTAC 59.961 38.462 0.00 0.00 41.18 2.90
49 50 3.253188 TGTTGTAAATCTCCAGCTTGCAC 59.747 43.478 0.00 0.00 0.00 4.57
50 51 3.485394 TGTTGTAAATCTCCAGCTTGCA 58.515 40.909 0.00 0.00 0.00 4.08
55 56 7.377766 TGTCTAAATGTTGTAAATCTCCAGC 57.622 36.000 0.00 0.00 0.00 4.85
115 122 2.686715 CGGCCAATTTCCTGTCCCTTAT 60.687 50.000 2.24 0.00 0.00 1.73
116 123 1.340600 CGGCCAATTTCCTGTCCCTTA 60.341 52.381 2.24 0.00 0.00 2.69
148 155 2.751259 TGAAATGCATGGCTGAGAGAAC 59.249 45.455 0.00 0.00 0.00 3.01
205 212 5.163290 CCTTCCCTTCTCCTCCTGTAATTAC 60.163 48.000 8.75 8.75 0.00 1.89
206 213 4.969359 CCTTCCCTTCTCCTCCTGTAATTA 59.031 45.833 0.00 0.00 0.00 1.40
207 214 3.783082 CCTTCCCTTCTCCTCCTGTAATT 59.217 47.826 0.00 0.00 0.00 1.40
210 217 1.622725 GCCTTCCCTTCTCCTCCTGTA 60.623 57.143 0.00 0.00 0.00 2.74
212 219 0.911525 TGCCTTCCCTTCTCCTCCTG 60.912 60.000 0.00 0.00 0.00 3.86
213 220 0.912006 GTGCCTTCCCTTCTCCTCCT 60.912 60.000 0.00 0.00 0.00 3.69
214 221 1.201429 TGTGCCTTCCCTTCTCCTCC 61.201 60.000 0.00 0.00 0.00 4.30
217 261 1.301293 CCTGTGCCTTCCCTTCTCC 59.699 63.158 0.00 0.00 0.00 3.71
237 281 0.466124 GATTCTCCTCCTCCGTTGGG 59.534 60.000 0.00 0.00 0.00 4.12
238 282 0.103208 CGATTCTCCTCCTCCGTTGG 59.897 60.000 0.00 0.00 0.00 3.77
242 286 2.333225 CGCGATTCTCCTCCTCCG 59.667 66.667 0.00 0.00 0.00 4.63
243 287 2.731374 CCGCGATTCTCCTCCTCC 59.269 66.667 8.23 0.00 0.00 4.30
245 289 3.541713 GCCCGCGATTCTCCTCCT 61.542 66.667 8.23 0.00 0.00 3.69
246 290 3.541713 AGCCCGCGATTCTCCTCC 61.542 66.667 8.23 0.00 0.00 4.30
247 291 1.735376 TACAGCCCGCGATTCTCCTC 61.735 60.000 8.23 0.00 0.00 3.71
297 360 4.121227 CACGTACACGCGCTGCTG 62.121 66.667 5.73 0.00 44.43 4.41
340 412 1.731720 CTTGCTTCCTTCCTTCCTCG 58.268 55.000 0.00 0.00 0.00 4.63
352 424 1.200948 CTAAACCTGCCTGCTTGCTTC 59.799 52.381 0.00 0.00 0.00 3.86
355 427 1.468914 GTACTAAACCTGCCTGCTTGC 59.531 52.381 0.00 0.00 0.00 4.01
356 428 2.084546 GGTACTAAACCTGCCTGCTTG 58.915 52.381 0.00 0.00 45.75 4.01
357 429 2.491675 GGTACTAAACCTGCCTGCTT 57.508 50.000 0.00 0.00 45.75 3.91
401 473 1.558167 TTTGTAGCCATCCGCCCTCA 61.558 55.000 0.00 0.00 38.78 3.86
417 490 1.151668 CTGAGGCAGGTCTCGTTTTG 58.848 55.000 0.00 0.00 36.61 2.44
422 495 3.288308 AACGCTGAGGCAGGTCTCG 62.288 63.158 0.00 0.00 38.60 4.04
606 679 4.034258 CAGCAGTGCAACGCCCAG 62.034 66.667 19.20 0.00 45.86 4.45
633 706 2.679996 ATTTGGTTGGGGAGCGCC 60.680 61.111 2.29 0.00 0.00 6.53
636 709 0.247460 GCTTGATTTGGTTGGGGAGC 59.753 55.000 0.00 0.00 0.00 4.70
637 710 1.631405 TGCTTGATTTGGTTGGGGAG 58.369 50.000 0.00 0.00 0.00 4.30
638 711 2.094100 TTGCTTGATTTGGTTGGGGA 57.906 45.000 0.00 0.00 0.00 4.81
639 712 2.104622 AGTTTGCTTGATTTGGTTGGGG 59.895 45.455 0.00 0.00 0.00 4.96
640 713 3.473923 AGTTTGCTTGATTTGGTTGGG 57.526 42.857 0.00 0.00 0.00 4.12
641 714 5.353678 TCAAAAGTTTGCTTGATTTGGTTGG 59.646 36.000 0.00 0.00 38.05 3.77
642 715 6.419980 TCAAAAGTTTGCTTGATTTGGTTG 57.580 33.333 0.00 0.00 38.05 3.77
645 718 6.536224 AGACTTCAAAAGTTTGCTTGATTTGG 59.464 34.615 0.00 0.00 43.03 3.28
646 719 7.063780 ACAGACTTCAAAAGTTTGCTTGATTTG 59.936 33.333 9.52 0.00 44.85 2.32
650 723 5.643379 ACAGACTTCAAAAGTTTGCTTGA 57.357 34.783 9.52 0.00 44.85 3.02
651 724 7.542130 ACTTAACAGACTTCAAAAGTTTGCTTG 59.458 33.333 9.52 2.68 44.85 4.01
655 728 7.218204 CCGAACTTAACAGACTTCAAAAGTTTG 59.782 37.037 8.37 8.37 46.01 2.93
657 730 6.373495 ACCGAACTTAACAGACTTCAAAAGTT 59.627 34.615 0.00 0.00 43.03 2.66
660 733 6.746745 AACCGAACTTAACAGACTTCAAAA 57.253 33.333 0.00 0.00 0.00 2.44
661 734 6.746745 AAACCGAACTTAACAGACTTCAAA 57.253 33.333 0.00 0.00 0.00 2.69
662 735 7.519328 GCATAAACCGAACTTAACAGACTTCAA 60.519 37.037 0.00 0.00 0.00 2.69
663 736 6.073440 GCATAAACCGAACTTAACAGACTTCA 60.073 38.462 0.00 0.00 0.00 3.02
665 738 5.180680 GGCATAAACCGAACTTAACAGACTT 59.819 40.000 0.00 0.00 0.00 3.01
666 739 4.694037 GGCATAAACCGAACTTAACAGACT 59.306 41.667 0.00 0.00 0.00 3.24
667 740 4.453136 TGGCATAAACCGAACTTAACAGAC 59.547 41.667 0.00 0.00 0.00 3.51
671 744 7.080353 AGTAATGGCATAAACCGAACTTAAC 57.920 36.000 0.00 0.00 0.00 2.01
672 745 7.148205 GGAAGTAATGGCATAAACCGAACTTAA 60.148 37.037 0.00 0.00 32.11 1.85
673 746 6.316890 GGAAGTAATGGCATAAACCGAACTTA 59.683 38.462 0.00 0.00 32.11 2.24
674 747 5.124936 GGAAGTAATGGCATAAACCGAACTT 59.875 40.000 0.00 2.67 33.65 2.66
675 748 4.638865 GGAAGTAATGGCATAAACCGAACT 59.361 41.667 0.00 0.00 0.00 3.01
676 749 4.396790 TGGAAGTAATGGCATAAACCGAAC 59.603 41.667 0.00 0.00 0.00 3.95
677 750 4.590918 TGGAAGTAATGGCATAAACCGAA 58.409 39.130 0.00 0.00 0.00 4.30
678 751 4.223556 TGGAAGTAATGGCATAAACCGA 57.776 40.909 0.00 0.00 0.00 4.69
698 771 8.607459 CAGAATAAAGTACAGTAGCTTCCATTG 58.393 37.037 0.00 0.00 0.00 2.82
699 772 8.540388 TCAGAATAAAGTACAGTAGCTTCCATT 58.460 33.333 0.00 0.00 0.00 3.16
700 773 8.079211 TCAGAATAAAGTACAGTAGCTTCCAT 57.921 34.615 0.00 0.00 0.00 3.41
701 774 7.476540 TCAGAATAAAGTACAGTAGCTTCCA 57.523 36.000 0.00 0.00 0.00 3.53
702 775 8.035984 AGTTCAGAATAAAGTACAGTAGCTTCC 58.964 37.037 0.00 0.00 0.00 3.46
703 776 8.989653 AGTTCAGAATAAAGTACAGTAGCTTC 57.010 34.615 0.00 0.00 0.00 3.86
704 777 9.780186 AAAGTTCAGAATAAAGTACAGTAGCTT 57.220 29.630 0.00 0.00 0.00 3.74
711 784 9.856162 ACCCTTTAAAGTTCAGAATAAAGTACA 57.144 29.630 14.03 0.00 34.88 2.90
719 792 9.807921 TTCAGAATACCCTTTAAAGTTCAGAAT 57.192 29.630 14.03 0.00 0.00 2.40
720 793 9.284968 CTTCAGAATACCCTTTAAAGTTCAGAA 57.715 33.333 14.03 15.48 0.00 3.02
721 794 7.883311 CCTTCAGAATACCCTTTAAAGTTCAGA 59.117 37.037 14.03 9.98 0.00 3.27
722 795 7.665974 ACCTTCAGAATACCCTTTAAAGTTCAG 59.334 37.037 14.03 8.05 0.00 3.02
723 796 7.447238 CACCTTCAGAATACCCTTTAAAGTTCA 59.553 37.037 14.03 0.00 0.00 3.18
724 797 7.447545 ACACCTTCAGAATACCCTTTAAAGTTC 59.552 37.037 14.03 10.52 0.00 3.01
725 798 7.295340 ACACCTTCAGAATACCCTTTAAAGTT 58.705 34.615 14.03 1.69 0.00 2.66
727 800 9.110502 GATACACCTTCAGAATACCCTTTAAAG 57.889 37.037 8.32 8.32 0.00 1.85
728 801 8.832735 AGATACACCTTCAGAATACCCTTTAAA 58.167 33.333 0.00 0.00 0.00 1.52
731 804 6.443849 TGAGATACACCTTCAGAATACCCTTT 59.556 38.462 0.00 0.00 0.00 3.11
732 805 5.964477 TGAGATACACCTTCAGAATACCCTT 59.036 40.000 0.00 0.00 0.00 3.95
733 806 5.529289 TGAGATACACCTTCAGAATACCCT 58.471 41.667 0.00 0.00 0.00 4.34
734 807 5.871396 TGAGATACACCTTCAGAATACCC 57.129 43.478 0.00 0.00 0.00 3.69
735 808 6.539103 GGTTTGAGATACACCTTCAGAATACC 59.461 42.308 0.00 0.00 0.00 2.73
736 809 6.255887 CGGTTTGAGATACACCTTCAGAATAC 59.744 42.308 0.00 0.00 0.00 1.89
738 811 5.178797 CGGTTTGAGATACACCTTCAGAAT 58.821 41.667 0.00 0.00 0.00 2.40
739 812 4.039973 ACGGTTTGAGATACACCTTCAGAA 59.960 41.667 0.00 0.00 0.00 3.02
740 813 3.576982 ACGGTTTGAGATACACCTTCAGA 59.423 43.478 0.00 0.00 0.00 3.27
741 814 3.679980 CACGGTTTGAGATACACCTTCAG 59.320 47.826 0.00 0.00 0.00 3.02
742 815 3.070446 ACACGGTTTGAGATACACCTTCA 59.930 43.478 0.00 0.00 0.00 3.02
743 816 3.660865 ACACGGTTTGAGATACACCTTC 58.339 45.455 0.00 0.00 0.00 3.46
744 817 3.764237 ACACGGTTTGAGATACACCTT 57.236 42.857 0.00 0.00 0.00 3.50
746 819 2.482721 CCAACACGGTTTGAGATACACC 59.517 50.000 0.11 0.00 0.00 4.16
747 820 2.482721 CCCAACACGGTTTGAGATACAC 59.517 50.000 0.11 0.00 0.00 2.90
748 821 2.105134 ACCCAACACGGTTTGAGATACA 59.895 45.455 0.11 0.00 29.19 2.29
749 822 2.774687 ACCCAACACGGTTTGAGATAC 58.225 47.619 0.11 0.00 29.19 2.24
751 824 2.358322 AACCCAACACGGTTTGAGAT 57.642 45.000 0.11 0.00 43.88 2.75
752 825 3.886324 AACCCAACACGGTTTGAGA 57.114 47.368 0.11 0.00 43.88 3.27
758 831 0.968393 ACTGCAAAACCCAACACGGT 60.968 50.000 0.00 0.00 37.93 4.83
759 832 1.001815 CTACTGCAAAACCCAACACGG 60.002 52.381 0.00 0.00 0.00 4.94
760 833 1.599419 GCTACTGCAAAACCCAACACG 60.599 52.381 0.00 0.00 39.41 4.49
762 835 1.036707 GGCTACTGCAAAACCCAACA 58.963 50.000 0.00 0.00 41.91 3.33
763 836 0.317160 GGGCTACTGCAAAACCCAAC 59.683 55.000 8.49 0.00 40.52 3.77
764 837 1.175983 CGGGCTACTGCAAAACCCAA 61.176 55.000 12.71 0.00 40.87 4.12
766 839 0.321830 TACGGGCTACTGCAAAACCC 60.322 55.000 4.09 4.09 41.91 4.11
767 840 1.084289 CTACGGGCTACTGCAAAACC 58.916 55.000 0.00 0.00 41.91 3.27
769 842 1.897133 TCTCTACGGGCTACTGCAAAA 59.103 47.619 0.00 0.00 41.91 2.44
770 843 1.552578 TCTCTACGGGCTACTGCAAA 58.447 50.000 0.00 0.00 41.91 3.68
772 845 1.133761 AGATCTCTACGGGCTACTGCA 60.134 52.381 0.00 0.00 41.91 4.41
773 846 1.611519 AGATCTCTACGGGCTACTGC 58.388 55.000 0.00 0.00 38.76 4.40
774 847 3.215151 TGAAGATCTCTACGGGCTACTG 58.785 50.000 0.00 0.00 0.00 2.74
776 849 2.554893 CCTGAAGATCTCTACGGGCTAC 59.445 54.545 0.00 0.00 0.00 3.58
777 850 2.175069 ACCTGAAGATCTCTACGGGCTA 59.825 50.000 17.02 0.00 0.00 3.93
778 851 1.063567 ACCTGAAGATCTCTACGGGCT 60.064 52.381 17.02 6.84 0.00 5.19
779 852 1.404843 ACCTGAAGATCTCTACGGGC 58.595 55.000 17.02 0.00 0.00 6.13
780 853 4.827835 TGAATACCTGAAGATCTCTACGGG 59.172 45.833 16.06 16.06 0.00 5.28
781 854 5.765677 TCTGAATACCTGAAGATCTCTACGG 59.234 44.000 0.00 0.00 0.00 4.02
783 856 6.015772 GGGTCTGAATACCTGAAGATCTCTAC 60.016 46.154 0.00 0.00 39.65 2.59
785 858 4.898861 GGGTCTGAATACCTGAAGATCTCT 59.101 45.833 0.00 0.00 39.65 3.10
786 859 4.898861 AGGGTCTGAATACCTGAAGATCTC 59.101 45.833 0.00 0.00 39.65 2.75
800 873 0.685097 CGGGAGTTTCAGGGTCTGAA 59.315 55.000 6.28 6.28 46.93 3.02
801 874 1.192146 CCGGGAGTTTCAGGGTCTGA 61.192 60.000 0.00 0.00 38.87 3.27
802 875 1.296715 CCGGGAGTTTCAGGGTCTG 59.703 63.158 0.00 0.00 0.00 3.51
804 877 1.003718 CACCGGGAGTTTCAGGGTC 60.004 63.158 6.32 0.00 0.00 4.46
805 878 1.057851 TTCACCGGGAGTTTCAGGGT 61.058 55.000 6.32 0.00 0.00 4.34
806 879 0.109723 TTTCACCGGGAGTTTCAGGG 59.890 55.000 6.32 0.00 0.00 4.45
807 880 2.084546 GATTTCACCGGGAGTTTCAGG 58.915 52.381 6.32 0.00 0.00 3.86
809 882 2.194201 GGATTTCACCGGGAGTTTCA 57.806 50.000 6.32 0.00 0.00 2.69
819 892 3.296322 TTTGATGCAACGGATTTCACC 57.704 42.857 0.00 0.00 0.00 4.02
820 893 5.610975 CAATTTTGATGCAACGGATTTCAC 58.389 37.500 0.00 0.00 0.00 3.18
824 897 3.002102 GGCAATTTTGATGCAACGGATT 58.998 40.909 0.00 0.00 45.60 3.01
825 898 2.028294 TGGCAATTTTGATGCAACGGAT 60.028 40.909 0.00 0.00 45.60 4.18
826 899 1.342496 TGGCAATTTTGATGCAACGGA 59.658 42.857 0.00 0.00 45.60 4.69
827 900 1.460359 GTGGCAATTTTGATGCAACGG 59.540 47.619 0.00 0.00 45.60 4.44
828 901 2.859870 GTGGCAATTTTGATGCAACG 57.140 45.000 0.00 0.00 45.60 4.10
830 903 2.133553 CGTGTGGCAATTTTGATGCAA 58.866 42.857 0.00 0.00 45.60 4.08
831 904 1.068281 ACGTGTGGCAATTTTGATGCA 59.932 42.857 0.00 0.00 45.60 3.96
833 906 3.010624 TCACGTGTGGCAATTTTGATG 57.989 42.857 16.51 0.00 0.00 3.07
834 907 3.724508 TTCACGTGTGGCAATTTTGAT 57.275 38.095 16.51 0.00 0.00 2.57
835 908 3.724508 ATTCACGTGTGGCAATTTTGA 57.275 38.095 16.51 0.00 0.00 2.69
836 909 4.269603 TGAAATTCACGTGTGGCAATTTTG 59.730 37.500 20.22 0.00 31.43 2.44
837 910 4.437239 TGAAATTCACGTGTGGCAATTTT 58.563 34.783 20.22 9.38 31.43 1.82
838 911 4.052159 TGAAATTCACGTGTGGCAATTT 57.948 36.364 19.66 19.66 32.90 1.82
839 912 3.724508 TGAAATTCACGTGTGGCAATT 57.275 38.095 16.51 11.01 0.00 2.32
840 913 3.940209 ATGAAATTCACGTGTGGCAAT 57.060 38.095 16.51 4.85 0.00 3.56
841 914 3.724508 AATGAAATTCACGTGTGGCAA 57.275 38.095 16.51 2.25 0.00 4.52
853 926 7.373493 CAACAACCTCTAGCAAGAATGAAATT 58.627 34.615 0.00 0.00 40.93 1.82
854 927 6.071728 CCAACAACCTCTAGCAAGAATGAAAT 60.072 38.462 0.00 0.00 0.00 2.17
855 928 5.241506 CCAACAACCTCTAGCAAGAATGAAA 59.758 40.000 0.00 0.00 0.00 2.69
856 929 4.761739 CCAACAACCTCTAGCAAGAATGAA 59.238 41.667 0.00 0.00 0.00 2.57
857 930 4.326826 CCAACAACCTCTAGCAAGAATGA 58.673 43.478 0.00 0.00 0.00 2.57
862 935 2.224523 TGTCCCAACAACCTCTAGCAAG 60.225 50.000 0.00 0.00 30.70 4.01
863 936 1.771854 TGTCCCAACAACCTCTAGCAA 59.228 47.619 0.00 0.00 30.70 3.91
864 937 1.429930 TGTCCCAACAACCTCTAGCA 58.570 50.000 0.00 0.00 30.70 3.49
865 938 2.224548 ACTTGTCCCAACAACCTCTAGC 60.225 50.000 0.00 0.00 40.45 3.42
867 940 3.968649 TGTACTTGTCCCAACAACCTCTA 59.031 43.478 0.00 0.00 40.45 2.43
868 941 2.775384 TGTACTTGTCCCAACAACCTCT 59.225 45.455 0.00 0.00 40.45 3.69
869 942 3.202829 TGTACTTGTCCCAACAACCTC 57.797 47.619 0.00 0.00 40.45 3.85
871 944 3.482436 TGATGTACTTGTCCCAACAACC 58.518 45.455 0.00 0.00 40.45 3.77
872 945 4.082787 CCATGATGTACTTGTCCCAACAAC 60.083 45.833 0.00 0.00 40.45 3.32
877 950 3.329225 TCAACCATGATGTACTTGTCCCA 59.671 43.478 0.00 0.00 0.00 4.37
878 951 3.950397 TCAACCATGATGTACTTGTCCC 58.050 45.455 0.00 0.00 0.00 4.46
880 953 9.113838 AGATAAATCAACCATGATGTACTTGTC 57.886 33.333 0.00 0.00 45.60 3.18
893 966 9.559732 CACTCCATACAATAGATAAATCAACCA 57.440 33.333 0.00 0.00 0.00 3.67
897 970 9.987272 CTGTCACTCCATACAATAGATAAATCA 57.013 33.333 0.00 0.00 0.00 2.57
901 974 7.360113 TGCTGTCACTCCATACAATAGATAA 57.640 36.000 0.00 0.00 0.00 1.75
902 975 6.976934 TGCTGTCACTCCATACAATAGATA 57.023 37.500 0.00 0.00 0.00 1.98
903 976 5.876651 TGCTGTCACTCCATACAATAGAT 57.123 39.130 0.00 0.00 0.00 1.98
905 978 6.036517 GTCTTTGCTGTCACTCCATACAATAG 59.963 42.308 0.00 0.00 0.00 1.73
906 979 5.874810 GTCTTTGCTGTCACTCCATACAATA 59.125 40.000 0.00 0.00 0.00 1.90
907 980 4.697352 GTCTTTGCTGTCACTCCATACAAT 59.303 41.667 0.00 0.00 0.00 2.71
910 983 3.664107 TGTCTTTGCTGTCACTCCATAC 58.336 45.455 0.00 0.00 0.00 2.39
912 985 2.369860 TCTGTCTTTGCTGTCACTCCAT 59.630 45.455 0.00 0.00 0.00 3.41
914 987 2.533266 TCTGTCTTTGCTGTCACTCC 57.467 50.000 0.00 0.00 0.00 3.85
915 988 2.545946 GGTTCTGTCTTTGCTGTCACTC 59.454 50.000 0.00 0.00 0.00 3.51
917 990 1.261619 CGGTTCTGTCTTTGCTGTCAC 59.738 52.381 0.00 0.00 0.00 3.67
919 992 1.583054 ACGGTTCTGTCTTTGCTGTC 58.417 50.000 0.00 0.00 0.00 3.51
920 993 2.159014 TGTACGGTTCTGTCTTTGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
921 994 2.479837 TGTACGGTTCTGTCTTTGCTG 58.520 47.619 0.00 0.00 0.00 4.41
922 995 2.902705 TGTACGGTTCTGTCTTTGCT 57.097 45.000 0.00 0.00 0.00 3.91
923 996 5.600908 TTATTGTACGGTTCTGTCTTTGC 57.399 39.130 0.00 0.00 0.00 3.68
924 997 7.581476 ACAATTATTGTACGGTTCTGTCTTTG 58.419 34.615 9.02 0.00 43.27 2.77
925 998 7.739498 ACAATTATTGTACGGTTCTGTCTTT 57.261 32.000 9.02 0.00 43.27 2.52
934 1007 8.380099 ATGGGACATATACAATTATTGTACGGT 58.620 33.333 18.53 15.88 46.37 4.83
935 1008 8.786826 ATGGGACATATACAATTATTGTACGG 57.213 34.615 18.53 13.29 46.37 4.02
954 1027 1.134670 CAGTTCTCGGAGGAATGGGAC 60.135 57.143 5.84 0.00 0.00 4.46
956 1029 0.179000 CCAGTTCTCGGAGGAATGGG 59.821 60.000 22.35 6.39 0.00 4.00
957 1030 0.179000 CCCAGTTCTCGGAGGAATGG 59.821 60.000 22.97 22.97 0.00 3.16
958 1031 1.134670 GTCCCAGTTCTCGGAGGAATG 60.135 57.143 6.77 6.77 0.00 2.67
959 1032 1.196012 GTCCCAGTTCTCGGAGGAAT 58.804 55.000 4.96 0.00 0.00 3.01
960 1033 1.248785 CGTCCCAGTTCTCGGAGGAA 61.249 60.000 4.96 0.00 36.36 3.36
961 1034 1.677966 CGTCCCAGTTCTCGGAGGA 60.678 63.158 4.96 0.00 36.36 3.71
962 1035 1.658686 CTCGTCCCAGTTCTCGGAGG 61.659 65.000 4.96 0.94 35.75 4.30
965 1038 0.109226 GTTCTCGTCCCAGTTCTCGG 60.109 60.000 0.00 0.00 0.00 4.63
966 1039 0.596577 TGTTCTCGTCCCAGTTCTCG 59.403 55.000 0.00 0.00 0.00 4.04
967 1040 1.336980 GGTGTTCTCGTCCCAGTTCTC 60.337 57.143 0.00 0.00 0.00 2.87
968 1041 0.680061 GGTGTTCTCGTCCCAGTTCT 59.320 55.000 0.00 0.00 0.00 3.01
969 1042 0.391597 TGGTGTTCTCGTCCCAGTTC 59.608 55.000 0.00 0.00 0.00 3.01
970 1043 0.106149 GTGGTGTTCTCGTCCCAGTT 59.894 55.000 0.00 0.00 0.00 3.16
972 1045 1.004918 GGTGGTGTTCTCGTCCCAG 60.005 63.158 0.00 0.00 0.00 4.45
974 1047 2.346365 GGGTGGTGTTCTCGTCCC 59.654 66.667 0.00 0.00 0.00 4.46
975 1048 1.301479 GTGGGTGGTGTTCTCGTCC 60.301 63.158 0.00 0.00 0.00 4.79
976 1049 1.301479 GGTGGGTGGTGTTCTCGTC 60.301 63.158 0.00 0.00 0.00 4.20
977 1050 2.814835 GGGTGGGTGGTGTTCTCGT 61.815 63.158 0.00 0.00 0.00 4.18
978 1051 2.032071 GGGTGGGTGGTGTTCTCG 59.968 66.667 0.00 0.00 0.00 4.04
983 2829 2.446994 TCTTCGGGTGGGTGGTGT 60.447 61.111 0.00 0.00 0.00 4.16
986 2832 0.321653 CTTTCTCTTCGGGTGGGTGG 60.322 60.000 0.00 0.00 0.00 4.61
994 2840 1.136110 GCTCCCTCTCTTTCTCTTCGG 59.864 57.143 0.00 0.00 0.00 4.30
995 2841 2.099405 AGCTCCCTCTCTTTCTCTTCG 58.901 52.381 0.00 0.00 0.00 3.79
996 2842 4.039124 CCATAGCTCCCTCTCTTTCTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
997 2843 3.966665 CCATAGCTCCCTCTCTTTCTCTT 59.033 47.826 0.00 0.00 0.00 2.85
1001 2856 2.542020 GCCATAGCTCCCTCTCTTTC 57.458 55.000 0.00 0.00 35.50 2.62
1021 2876 3.003173 CGGCCCTCTTCCTCCACA 61.003 66.667 0.00 0.00 0.00 4.17
1036 2891 1.771255 AGAGATGGGATTCCTTTCCGG 59.229 52.381 2.01 0.00 36.58 5.14
1037 2892 2.224402 GGAGAGATGGGATTCCTTTCCG 60.224 54.545 2.01 0.00 36.58 4.30
1066 2921 4.772231 TTCTCCTCCCCGTCCCCG 62.772 72.222 0.00 0.00 0.00 5.73
1067 2922 3.082055 GTTCTCCTCCCCGTCCCC 61.082 72.222 0.00 0.00 0.00 4.81
1068 2923 1.687297 GATGTTCTCCTCCCCGTCCC 61.687 65.000 0.00 0.00 0.00 4.46
1069 2924 1.823976 GATGTTCTCCTCCCCGTCC 59.176 63.158 0.00 0.00 0.00 4.79
1070 2925 1.437986 CGATGTTCTCCTCCCCGTC 59.562 63.158 0.00 0.00 0.00 4.79
1071 2926 2.722201 GCGATGTTCTCCTCCCCGT 61.722 63.158 0.00 0.00 0.00 5.28
1134 2992 3.119849 CCATAAACCTTGTTTCGGAGCAG 60.120 47.826 0.00 0.00 0.00 4.24
1139 2997 3.818773 AGACACCATAAACCTTGTTTCGG 59.181 43.478 0.00 1.72 0.00 4.30
1166 3025 4.261741 CCACATCCAAGAAAACAGTCCAAG 60.262 45.833 0.00 0.00 0.00 3.61
1171 3030 4.279169 CACATCCACATCCAAGAAAACAGT 59.721 41.667 0.00 0.00 0.00 3.55
1200 3059 1.667724 CACCGAGATTGACAATGGAGC 59.332 52.381 5.14 0.00 0.00 4.70
1214 3082 3.491267 GGAATAAGCGAATCTTCACCGAG 59.509 47.826 0.00 0.00 36.25 4.63
1227 3095 4.083003 TGCCTAAAAACAGTGGAATAAGCG 60.083 41.667 0.00 0.00 0.00 4.68
1271 3140 5.536916 ACTCTCCCGAAATCCTCTACTTATG 59.463 44.000 0.00 0.00 0.00 1.90
1287 3157 0.247736 CCCTGTCAAGAACTCTCCCG 59.752 60.000 0.00 0.00 0.00 5.14
1319 3189 0.250727 TACCAAGCAAGACCTGTGCC 60.251 55.000 0.00 0.00 43.27 5.01
1347 3227 8.667076 AAATAAATGATTTAAATGCAGGCCTC 57.333 30.769 0.00 0.00 35.91 4.70
1370 3250 7.635648 ACAAAGTAGGCCACCATATAAGTAAA 58.364 34.615 5.01 0.00 0.00 2.01
1372 3252 6.818281 ACAAAGTAGGCCACCATATAAGTA 57.182 37.500 5.01 0.00 0.00 2.24
1373 3253 5.710409 ACAAAGTAGGCCACCATATAAGT 57.290 39.130 5.01 0.00 0.00 2.24
1374 3254 8.691661 AAATACAAAGTAGGCCACCATATAAG 57.308 34.615 5.01 0.00 0.00 1.73
1375 3255 9.482175 AAAAATACAAAGTAGGCCACCATATAA 57.518 29.630 5.01 0.00 0.00 0.98
1376 3256 8.908903 CAAAAATACAAAGTAGGCCACCATATA 58.091 33.333 5.01 0.00 0.00 0.86
1377 3257 7.398904 ACAAAAATACAAAGTAGGCCACCATAT 59.601 33.333 5.01 0.00 0.00 1.78
1394 3301 6.404734 CCACCCTATGAGCTGAACAAAAATAC 60.405 42.308 0.00 0.00 0.00 1.89
1558 3466 7.648142 TGAACCAAGTGAGTCATAAAATCAAC 58.352 34.615 0.00 0.00 0.00 3.18
1603 3511 0.108138 ATCTAGGAACTGCACACCGC 60.108 55.000 0.00 0.00 41.52 5.68
1604 3512 1.645034 CATCTAGGAACTGCACACCG 58.355 55.000 0.00 0.00 41.52 4.94
1630 3540 3.932545 CCTGTAGGCTGTAGCTAGATG 57.067 52.381 0.00 0.00 41.70 2.90
1763 3750 3.003482 GCATCTTCAATCATCCTGCAGAC 59.997 47.826 17.39 0.00 0.00 3.51
1843 3832 6.043012 TGAACACCATTCCAATTCCTTGATTT 59.957 34.615 0.00 0.00 34.04 2.17
1874 3863 3.434940 AAACCGGTAGCCTTTCTGAAT 57.565 42.857 8.00 0.00 0.00 2.57
1963 3952 5.338632 TCCTGGTTCTCACCTGTTAAGATA 58.661 41.667 0.00 0.00 44.61 1.98
1991 3980 0.688487 TTGTGACCGTTTCTAGGGGG 59.312 55.000 0.00 0.00 33.51 5.40
2002 4001 3.914312 AGTATCTGTGAGTTTGTGACCG 58.086 45.455 0.00 0.00 0.00 4.79
2083 4092 9.680315 CGTTCTTATATTAGTTTACAGAGGGAG 57.320 37.037 0.00 0.00 0.00 4.30
2150 4203 9.544579 ACTTTAAGTACTACTCCCTCTGTAAAT 57.455 33.333 0.00 0.00 0.00 1.40
2151 4204 8.800332 CACTTTAAGTACTACTCCCTCTGTAAA 58.200 37.037 0.00 0.00 0.00 2.01
2152 4205 7.946776 ACACTTTAAGTACTACTCCCTCTGTAA 59.053 37.037 0.00 0.00 0.00 2.41
2153 4206 7.465116 ACACTTTAAGTACTACTCCCTCTGTA 58.535 38.462 0.00 0.00 0.00 2.74
2155 4208 6.660094 AGACACTTTAAGTACTACTCCCTCTG 59.340 42.308 0.00 0.00 0.00 3.35
2156 4209 6.792424 AGACACTTTAAGTACTACTCCCTCT 58.208 40.000 0.00 0.00 0.00 3.69
2247 4300 5.076873 GGTATAGTCTTCATCAGCTCCTCT 58.923 45.833 0.00 0.00 0.00 3.69
2416 4833 4.321230 GGAGTAAACTGTTGCCCAAGAATG 60.321 45.833 0.00 0.00 0.00 2.67
2418 4835 3.219281 GGAGTAAACTGTTGCCCAAGAA 58.781 45.455 0.00 0.00 0.00 2.52
2451 4868 2.661718 GGGTCCTGAAGTTTGTTCCAA 58.338 47.619 0.00 0.00 0.00 3.53
2641 5075 4.997395 AGTTGAAACTAGCACCACATAGTG 59.003 41.667 0.00 0.00 37.52 2.74
2644 5078 5.865085 AGAAGTTGAAACTAGCACCACATA 58.135 37.500 0.00 0.00 38.57 2.29
2663 5097 5.070001 TGGTTGGAAGTCCATTACAAGAAG 58.930 41.667 0.00 0.00 42.56 2.85
2665 5099 4.715534 TGGTTGGAAGTCCATTACAAGA 57.284 40.909 0.00 0.00 42.56 3.02
2666 5100 5.476599 TGATTGGTTGGAAGTCCATTACAAG 59.523 40.000 0.00 0.00 42.56 3.16
2667 5101 5.389520 TGATTGGTTGGAAGTCCATTACAA 58.610 37.500 0.00 7.46 46.97 2.41
2668 5102 4.991776 TGATTGGTTGGAAGTCCATTACA 58.008 39.130 0.00 0.00 46.97 2.41
2669 5103 5.253330 TCTGATTGGTTGGAAGTCCATTAC 58.747 41.667 0.00 0.00 46.97 1.89
2670 5104 5.512942 TCTGATTGGTTGGAAGTCCATTA 57.487 39.130 0.00 0.00 46.97 1.90
2671 5105 4.387026 TCTGATTGGTTGGAAGTCCATT 57.613 40.909 0.00 0.00 46.97 3.16
2893 5578 3.473647 CCAGCCTCCTCGCCATCA 61.474 66.667 0.00 0.00 0.00 3.07
2930 5615 1.456892 ACCCGAGGATATGCCGACA 60.457 57.895 6.66 0.00 43.43 4.35
2945 5630 4.683334 GCAGCGACGTTTGCACCC 62.683 66.667 17.63 0.83 40.02 4.61
3031 5717 3.690139 AGAGACTCGCGAAATCAGAACTA 59.310 43.478 19.08 0.00 0.00 2.24
3115 5801 3.067320 CAGAGTTCATGTATCTCTCGCCA 59.933 47.826 11.74 0.00 36.57 5.69
3178 5864 2.231964 GAGCTGCCCATGACATCAAAAA 59.768 45.455 0.00 0.00 0.00 1.94
3249 5935 4.810191 ACAGAGGATTCACTGTACCTTC 57.190 45.455 1.70 0.00 41.75 3.46
3261 5947 6.469782 TTTGAAAAGCAAGAACAGAGGATT 57.530 33.333 0.00 0.00 37.87 3.01
3283 5969 2.486918 GCAAAGGCATGCTCTGTTTTT 58.513 42.857 18.92 6.37 43.06 1.94
3352 6156 5.123502 GTGCCCTTATGAAGATCAGCATATG 59.876 44.000 0.00 0.00 0.00 1.78
3379 6183 4.280436 TGAGCCGGACAAGAAAAGATAA 57.720 40.909 5.05 0.00 0.00 1.75
3439 8198 3.429141 CGCCACCTCTGCTGCAAG 61.429 66.667 3.02 4.44 0.00 4.01
3586 8576 4.351938 AGCAACGACTACGCGGCA 62.352 61.111 12.47 0.00 43.96 5.69
3717 9174 3.009033 CCCTGGAAGACAAGTACAATGGA 59.991 47.826 0.00 0.00 34.07 3.41
3768 9225 5.364446 TCTTTCAGGGATTAAGCCGTATGTA 59.636 40.000 4.37 0.00 0.00 2.29
3779 9236 8.950007 AACTGGTATTTTTCTTTCAGGGATTA 57.050 30.769 0.00 0.00 0.00 1.75
3788 9245 7.418337 ACAAGGTGAACTGGTATTTTTCTTT 57.582 32.000 0.00 0.00 29.14 2.52
3818 9278 6.889177 TGCTGATTCCAAATTAGTTATGACCA 59.111 34.615 0.00 0.00 0.00 4.02
3820 9280 7.989826 ACTGCTGATTCCAAATTAGTTATGAC 58.010 34.615 0.00 0.00 0.00 3.06
3837 9297 9.774742 GAAGTTTTATCGAAAATAACTGCTGAT 57.225 29.630 0.00 0.00 36.92 2.90
3895 9904 9.921637 CCTAGCAAAAGGTGAATTTTTATACAA 57.078 29.630 0.00 0.00 30.01 2.41
3900 9909 7.657336 CACTCCTAGCAAAAGGTGAATTTTTA 58.343 34.615 8.34 0.00 37.91 1.52
3905 9914 3.084786 GCACTCCTAGCAAAAGGTGAAT 58.915 45.455 8.34 0.00 37.91 2.57
3950 9959 1.303561 GTCAACCCAGCAGGCATCA 60.304 57.895 0.00 0.00 40.58 3.07
3994 10004 5.130350 ACAGTAATAGCCTTGTGTGTGTTT 58.870 37.500 0.00 0.00 0.00 2.83
3997 10007 5.932303 ACTAACAGTAATAGCCTTGTGTGTG 59.068 40.000 0.00 0.00 0.00 3.82
4082 10096 0.318955 CAAGTTTTCTGCGCCCCTTG 60.319 55.000 4.18 4.26 0.00 3.61
4104 10118 7.390440 CGGATTCTCCCAAGTATGCATTATTAA 59.610 37.037 3.54 0.00 31.13 1.40
4199 11555 6.708949 TCATGGTCCTTGAAACAACTAACTAC 59.291 38.462 4.99 0.00 0.00 2.73
4218 11574 6.533723 CACACGTTGTACAATATACTCATGGT 59.466 38.462 12.26 0.00 0.00 3.55
4272 11628 4.468095 AATATTTCGTAGAATGTGCCGC 57.532 40.909 0.00 0.00 45.90 6.53
4287 11643 9.170734 AGCGCATCAAGATGATACATAATATTT 57.829 29.630 11.47 0.00 41.20 1.40
4320 11676 7.867921 TCTCCTTTTTGGAAATATAGGCACTA 58.132 34.615 0.00 0.00 45.41 2.74
4321 11677 6.731467 TCTCCTTTTTGGAAATATAGGCACT 58.269 36.000 0.00 0.00 45.63 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.