Multiple sequence alignment - TraesCS7A01G359700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G359700 chr7A 100.000 2916 0 0 3011 5926 533580765 533583680 0.000000e+00 5385.0
1 TraesCS7A01G359700 chr7A 100.000 2614 0 0 1 2614 533577755 533580368 0.000000e+00 4828.0
2 TraesCS7A01G359700 chr7A 90.057 875 73 7 3706 4572 565439945 565439077 0.000000e+00 1122.0
3 TraesCS7A01G359700 chr7A 83.699 865 100 18 4981 5822 533598359 533599205 0.000000e+00 778.0
4 TraesCS7A01G359700 chr7A 95.556 90 4 0 5819 5908 9657467 9657378 1.720000e-30 145.0
5 TraesCS7A01G359700 chr7B 89.779 1898 122 34 300 2154 490684431 490682563 0.000000e+00 2364.0
6 TraesCS7A01G359700 chr7B 90.191 1254 93 12 4578 5829 490678184 490676959 0.000000e+00 1607.0
7 TraesCS7A01G359700 chr7B 91.496 929 52 16 3214 4138 490681998 490681093 0.000000e+00 1253.0
8 TraesCS7A01G359700 chr7B 88.921 695 47 9 4599 5286 490674123 490673452 0.000000e+00 830.0
9 TraesCS7A01G359700 chr7B 94.231 416 23 1 4157 4572 490680524 490680110 8.380000e-178 634.0
10 TraesCS7A01G359700 chr7B 93.262 282 16 2 2333 2614 490682564 490682286 4.270000e-111 412.0
11 TraesCS7A01G359700 chr7B 96.364 220 5 2 3011 3229 490682229 490682012 5.650000e-95 359.0
12 TraesCS7A01G359700 chr7B 89.270 233 23 1 70 302 490684971 490684741 2.090000e-74 291.0
13 TraesCS7A01G359700 chr7B 85.714 70 3 4 1 65 490685067 490685000 3.830000e-07 67.6
14 TraesCS7A01G359700 chr7B 90.000 50 5 0 1240 1289 524811837 524811788 1.380000e-06 65.8
15 TraesCS7A01G359700 chr7D 91.677 1598 105 19 578 2161 467164899 467163316 0.000000e+00 2189.0
16 TraesCS7A01G359700 chr7D 93.056 1152 70 7 4673 5824 467159524 467158383 0.000000e+00 1676.0
17 TraesCS7A01G359700 chr7D 92.015 1052 59 6 3524 4572 467162501 467161472 0.000000e+00 1454.0
18 TraesCS7A01G359700 chr7D 95.422 415 14 3 3011 3421 467162913 467162500 0.000000e+00 656.0
19 TraesCS7A01G359700 chr7D 91.176 442 32 2 4792 5226 467044340 467043899 1.420000e-165 593.0
20 TraesCS7A01G359700 chr7D 94.318 352 18 1 2263 2614 467163319 467162970 6.760000e-149 538.0
21 TraesCS7A01G359700 chr7D 97.076 171 5 0 5652 5822 467042975 467042805 7.510000e-74 289.0
22 TraesCS7A01G359700 chr7D 94.488 127 6 1 4673 4799 467159672 467159547 1.690000e-45 195.0
23 TraesCS7A01G359700 chr7D 88.148 135 10 2 5287 5421 467043621 467043493 7.950000e-34 156.0
24 TraesCS7A01G359700 chr7D 90.000 50 5 0 1240 1289 496720097 496720048 1.380000e-06 65.8
25 TraesCS7A01G359700 chr7D 97.297 37 1 0 5250 5286 467043901 467043865 4.960000e-06 63.9
26 TraesCS7A01G359700 chr6A 89.143 875 73 10 3706 4572 68977225 68978085 0.000000e+00 1070.0
27 TraesCS7A01G359700 chr1A 91.000 300 22 2 3800 4094 543395290 543395589 3.330000e-107 399.0
28 TraesCS7A01G359700 chr1A 93.571 140 9 0 3708 3847 543393856 543393995 6.020000e-50 209.0
29 TraesCS7A01G359700 chr6D 94.595 111 6 0 2157 2267 77986226 77986116 7.900000e-39 172.0
30 TraesCS7A01G359700 chr6D 91.000 100 9 0 5816 5915 291718564 291718663 1.040000e-27 135.0
31 TraesCS7A01G359700 chr2D 94.595 111 6 0 2157 2267 428751109 428750999 7.900000e-39 172.0
32 TraesCS7A01G359700 chr2D 94.595 111 6 0 2157 2267 560254189 560254079 7.900000e-39 172.0
33 TraesCS7A01G359700 chr2D 88.679 53 6 0 1237 1289 427336558 427336506 1.380000e-06 65.8
34 TraesCS7A01G359700 chr2B 95.370 108 5 0 2159 2266 501608130 501608023 7.900000e-39 172.0
35 TraesCS7A01G359700 chr2B 88.679 53 6 0 1237 1289 504207769 504207717 1.380000e-06 65.8
36 TraesCS7A01G359700 chr2A 94.595 111 6 0 2157 2267 183375850 183375740 7.900000e-39 172.0
37 TraesCS7A01G359700 chr2A 93.684 95 6 0 5814 5908 78805768 78805674 6.190000e-30 143.0
38 TraesCS7A01G359700 chr4B 93.805 113 6 1 2154 2266 299557696 299557585 1.020000e-37 169.0
39 TraesCS7A01G359700 chr3D 93.750 112 7 0 2156 2267 497083834 497083723 1.020000e-37 169.0
40 TraesCS7A01G359700 chr6B 91.667 120 8 2 2150 2269 622730982 622731099 1.320000e-36 165.0
41 TraesCS7A01G359700 chr1B 91.667 120 8 2 2152 2269 683469552 683469671 1.320000e-36 165.0
42 TraesCS7A01G359700 chr5D 96.774 93 3 0 5818 5910 10524835 10524927 7.950000e-34 156.0
43 TraesCS7A01G359700 chr5D 93.617 94 6 0 5818 5911 387711222 387711315 2.230000e-29 141.0
44 TraesCS7A01G359700 chr4D 95.833 96 4 0 5813 5908 198483038 198482943 7.950000e-34 156.0
45 TraesCS7A01G359700 chr4D 91.000 100 9 0 5816 5915 215187794 215187695 1.040000e-27 135.0
46 TraesCS7A01G359700 chr4D 90.000 50 5 0 1240 1289 60170041 60169992 1.380000e-06 65.8
47 TraesCS7A01G359700 chr4D 90.000 50 5 0 1240 1289 60175968 60176017 1.380000e-06 65.8
48 TraesCS7A01G359700 chr3A 95.604 91 3 1 5820 5910 660055875 660055964 1.720000e-30 145.0
49 TraesCS7A01G359700 chrUn 92.000 100 8 0 5816 5915 96524779 96524680 2.230000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G359700 chr7A 533577755 533583680 5925 False 5106.500000 5385 100.000000 1 5926 2 chr7A.!!$F2 5925
1 TraesCS7A01G359700 chr7A 565439077 565439945 868 True 1122.000000 1122 90.057000 3706 4572 1 chr7A.!!$R2 866
2 TraesCS7A01G359700 chr7A 533598359 533599205 846 False 778.000000 778 83.699000 4981 5822 1 chr7A.!!$F1 841
3 TraesCS7A01G359700 chr7B 490673452 490685067 11615 True 868.622222 2364 91.025333 1 5829 9 chr7B.!!$R2 5828
4 TraesCS7A01G359700 chr7D 467158383 467164899 6516 True 1118.000000 2189 93.496000 578 5824 6 chr7D.!!$R3 5246
5 TraesCS7A01G359700 chr7D 467042805 467044340 1535 True 275.475000 593 93.424250 4792 5822 4 chr7D.!!$R2 1030
6 TraesCS7A01G359700 chr6A 68977225 68978085 860 False 1070.000000 1070 89.143000 3706 4572 1 chr6A.!!$F1 866
7 TraesCS7A01G359700 chr1A 543393856 543395589 1733 False 304.000000 399 92.285500 3708 4094 2 chr1A.!!$F1 386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 1043 0.187117 TCCACCATGCCTTCAAACCA 59.813 50.0 0.00 0.00 0.00 3.67 F
1222 1602 0.978146 ACGAGAGGGAGTGGGAATGG 60.978 60.0 0.00 0.00 0.00 3.16 F
2085 2474 0.236711 CTCTTGCGCAAGTGACCAAG 59.763 55.0 40.37 28.45 39.38 3.61 F
3336 3760 0.665835 GGGACAAATTCGCACACACA 59.334 50.0 0.00 0.00 37.14 3.72 F
3903 5674 0.318955 CAAGTTTTCTGCGCCCCTTG 60.319 55.0 4.18 4.26 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1979 1.200948 GAGAAGGGTGCATGAAACAGC 59.799 52.381 0.00 0.0 34.81 4.40 R
2585 2977 1.336148 CGATGCACACAGCCATGTTTT 60.336 47.619 0.00 0.0 44.83 2.43 R
3427 3854 0.252197 GCGACCACTCCCCAGTTAAT 59.748 55.000 0.00 0.0 0.00 1.40 R
4399 6727 0.241749 TGAAACACGTCTCCGCGTAT 59.758 50.000 4.92 0.0 43.83 3.06 R
5040 9472 0.249447 TGCTTGTCGGCATATCCTCG 60.249 55.000 0.00 0.0 37.29 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 71 1.067821 AGGAGCAGACGATCGATTTCC 59.932 52.381 24.34 18.77 0.00 3.13
66 72 1.202417 GGAGCAGACGATCGATTTCCA 60.202 52.381 24.34 0.00 0.00 3.53
67 73 2.540515 GAGCAGACGATCGATTTCCAA 58.459 47.619 24.34 0.00 0.00 3.53
68 74 3.126831 GAGCAGACGATCGATTTCCAAT 58.873 45.455 24.34 0.00 0.00 3.16
104 134 4.853268 GCAAAGTAAGCCATAGCAAGATC 58.147 43.478 0.00 0.00 43.56 2.75
128 158 1.001181 AGGATGTTGTTGTGGCAATGC 59.999 47.619 0.00 0.00 0.00 3.56
133 163 1.527736 GTTGTTGTGGCAATGCATGTG 59.472 47.619 7.79 2.08 0.00 3.21
169 199 7.018826 CACAAATACTCGGCTAAATTTTCGAA 58.981 34.615 0.00 0.00 0.00 3.71
171 201 7.749126 ACAAATACTCGGCTAAATTTTCGAAAG 59.251 33.333 10.98 0.00 0.00 2.62
172 202 7.605410 AATACTCGGCTAAATTTTCGAAAGA 57.395 32.000 10.98 3.16 39.20 2.52
173 203 7.787725 ATACTCGGCTAAATTTTCGAAAGAT 57.212 32.000 10.98 5.36 41.60 2.40
175 205 7.605410 ACTCGGCTAAATTTTCGAAAGATAA 57.395 32.000 10.98 0.00 41.60 1.75
214 244 4.685169 AGCACACAAAAATAGATCCGTG 57.315 40.909 0.00 0.00 0.00 4.94
226 256 0.758734 GATCCGTGACCATGATCCCA 59.241 55.000 0.00 0.00 30.89 4.37
242 272 3.827008 TCCCACAGCTCATTAGATGAC 57.173 47.619 0.00 0.00 41.85 3.06
247 277 5.508825 CCCACAGCTCATTAGATGACTAGTC 60.509 48.000 16.32 16.32 41.85 2.59
257 287 8.106462 TCATTAGATGACTAGTCTATCCAGAGG 58.894 40.741 23.01 13.17 33.59 3.69
266 296 4.362677 AGTCTATCCAGAGGCCAAGTAAA 58.637 43.478 5.01 0.00 0.00 2.01
337 679 4.159879 CGATAGAGTTGTCACCTTTACCCT 59.840 45.833 0.00 0.00 39.76 4.34
338 680 5.359009 CGATAGAGTTGTCACCTTTACCCTA 59.641 44.000 0.00 0.00 39.76 3.53
340 682 3.261137 AGAGTTGTCACCTTTACCCTAGC 59.739 47.826 0.00 0.00 0.00 3.42
358 700 0.881118 GCCTGATGAGACGGCAAAAA 59.119 50.000 0.00 0.00 43.25 1.94
390 732 7.416438 CGAGAGAAGTAAAAGAAGTAGGCCATA 60.416 40.741 5.01 0.00 0.00 2.74
395 737 3.460857 AAAGAAGTAGGCCATAGCTCG 57.539 47.619 5.01 0.00 39.73 5.03
409 751 4.319911 CCATAGCTCGGAAAACAACGAAAA 60.320 41.667 0.00 0.00 38.79 2.29
428 771 3.733443 AACCTGAGGTTTTGTTGATGC 57.267 42.857 11.91 0.00 44.33 3.91
435 778 3.641648 AGGTTTTGTTGATGCGTCATTG 58.358 40.909 9.96 0.00 33.56 2.82
436 779 2.730928 GGTTTTGTTGATGCGTCATTGG 59.269 45.455 9.96 0.00 33.56 3.16
477 820 7.203910 ACAGATCGAAAAGACATGGATACTAC 58.796 38.462 0.00 0.00 37.61 2.73
481 824 9.130312 GATCGAAAAGACATGGATACTACATAC 57.870 37.037 0.00 0.00 37.61 2.39
483 826 8.471609 TCGAAAAGACATGGATACTACATACAA 58.528 33.333 0.00 0.00 37.61 2.41
491 834 6.056090 TGGATACTACATACAAGCCACAAA 57.944 37.500 0.00 0.00 37.61 2.83
505 848 6.435277 ACAAGCCACAAAATGATGAGAGTATT 59.565 34.615 0.00 0.00 0.00 1.89
522 865 0.374758 ATTTGCTCGTACTGCGCATG 59.625 50.000 12.24 8.04 41.07 4.06
562 905 2.159014 TGTTGCGTTCAGTCTACCAACT 60.159 45.455 0.00 0.00 35.04 3.16
568 911 4.369182 CGTTCAGTCTACCAACTTGTCTT 58.631 43.478 0.00 0.00 0.00 3.01
569 912 5.526115 CGTTCAGTCTACCAACTTGTCTTA 58.474 41.667 0.00 0.00 0.00 2.10
571 914 5.464030 TCAGTCTACCAACTTGTCTTACC 57.536 43.478 0.00 0.00 0.00 2.85
572 915 5.145564 TCAGTCTACCAACTTGTCTTACCT 58.854 41.667 0.00 0.00 0.00 3.08
574 917 6.952358 TCAGTCTACCAACTTGTCTTACCTAT 59.048 38.462 0.00 0.00 0.00 2.57
578 921 8.312564 GTCTACCAACTTGTCTTACCTATCTTT 58.687 37.037 0.00 0.00 0.00 2.52
580 923 6.473758 ACCAACTTGTCTTACCTATCTTTCC 58.526 40.000 0.00 0.00 0.00 3.13
592 935 4.102367 ACCTATCTTTCCTGCATCCTCTTC 59.898 45.833 0.00 0.00 0.00 2.87
594 937 1.012841 CTTTCCTGCATCCTCTTCGC 58.987 55.000 0.00 0.00 0.00 4.70
619 962 0.550914 TTCTTGTCTGGCCACCAACT 59.449 50.000 0.00 0.00 30.80 3.16
643 986 1.854126 CCAGAAAGCAACAACAAAGCG 59.146 47.619 0.00 0.00 0.00 4.68
647 990 1.938625 AAGCAACAACAAAGCGCAAT 58.061 40.000 11.47 0.00 0.00 3.56
650 993 1.850377 CAACAACAAAGCGCAATCCA 58.150 45.000 11.47 0.00 0.00 3.41
670 1013 3.462982 CAAGGCAACACACAGTACTGTA 58.537 45.455 27.48 0.00 40.19 2.74
671 1014 3.107642 AGGCAACACACAGTACTGTAC 57.892 47.619 27.48 9.93 40.19 2.90
691 1034 0.743345 GTACGTTCCTCCACCATGCC 60.743 60.000 0.00 0.00 0.00 4.40
697 1040 0.776810 TCCTCCACCATGCCTTCAAA 59.223 50.000 0.00 0.00 0.00 2.69
699 1042 0.890683 CTCCACCATGCCTTCAAACC 59.109 55.000 0.00 0.00 0.00 3.27
700 1043 0.187117 TCCACCATGCCTTCAAACCA 59.813 50.000 0.00 0.00 0.00 3.67
848 1196 1.150827 TCAGCAACAGCAACTCATCG 58.849 50.000 0.00 0.00 0.00 3.84
855 1203 1.889170 ACAGCAACTCATCGTCTCTGA 59.111 47.619 0.00 0.00 32.52 3.27
869 1217 3.124297 CGTCTCTGAAACATTCCTCTTGC 59.876 47.826 0.00 0.00 0.00 4.01
907 1283 1.066929 GCCCCCACACTTTGCTTAATG 60.067 52.381 0.00 0.00 0.00 1.90
920 1296 3.430453 TGCTTAATGGGTTTGCTAGCTT 58.570 40.909 17.23 2.16 0.00 3.74
944 1320 1.074889 TGGCCCTCCTAACCAACTTTC 59.925 52.381 0.00 0.00 0.00 2.62
950 1326 3.434453 CCTCCTAACCAACTTTCCACACA 60.434 47.826 0.00 0.00 0.00 3.72
964 1342 8.806429 ACTTTCCACACATATATCAAACATCA 57.194 30.769 0.00 0.00 0.00 3.07
1026 1404 3.584848 ACTTCTCTCCCTGTAAGCAACAT 59.415 43.478 0.00 0.00 37.50 2.71
1045 1423 5.398603 ACATACATGCCATCTACTAGCTC 57.601 43.478 0.00 0.00 0.00 4.09
1046 1424 4.835056 ACATACATGCCATCTACTAGCTCA 59.165 41.667 0.00 0.00 0.00 4.26
1098 1476 3.572539 CGCTCTCTCTCGCTCGCT 61.573 66.667 0.00 0.00 0.00 4.93
1222 1602 0.978146 ACGAGAGGGAGTGGGAATGG 60.978 60.000 0.00 0.00 0.00 3.16
1268 1648 2.357034 GGCTTCGTCTTCGGCACA 60.357 61.111 0.00 0.00 37.69 4.57
1294 1674 2.595238 CTCCGCCTACCAGGTAGTAAT 58.405 52.381 23.04 0.00 37.80 1.89
1307 1687 8.980481 ACCAGGTAGTAATAATTCTCAATTGG 57.020 34.615 5.42 0.00 32.38 3.16
1426 1812 8.099364 AGTGTGTTCTTTTCACATAATCGATT 57.901 30.769 16.15 16.15 45.43 3.34
1437 1823 3.181465 ACATAATCGATTGAGCGTCCCTT 60.181 43.478 20.87 0.00 0.00 3.95
1464 1850 4.104086 TCTCTGTGGTATGGGATCTGTTT 58.896 43.478 0.00 0.00 0.00 2.83
1465 1851 4.080919 TCTCTGTGGTATGGGATCTGTTTG 60.081 45.833 0.00 0.00 0.00 2.93
1466 1852 3.587061 TCTGTGGTATGGGATCTGTTTGT 59.413 43.478 0.00 0.00 0.00 2.83
1468 1854 5.428457 TCTGTGGTATGGGATCTGTTTGTAT 59.572 40.000 0.00 0.00 0.00 2.29
1469 1855 6.613679 TCTGTGGTATGGGATCTGTTTGTATA 59.386 38.462 0.00 0.00 0.00 1.47
1475 1861 5.862678 TGGGATCTGTTTGTATACGATCA 57.137 39.130 15.31 10.42 33.62 2.92
1531 1917 4.207891 ACCATGCTAGTTCATTCGTTCT 57.792 40.909 0.00 0.00 0.00 3.01
1590 1979 0.877071 GACTTGTGGGTCATGTGCTG 59.123 55.000 0.00 0.00 35.12 4.41
1690 2079 7.545615 GTCGATGCCTCCTTTGAAAAATAAAAT 59.454 33.333 0.00 0.00 0.00 1.82
1865 2254 5.337554 CATGAGCAACACATGATTGTTAGG 58.662 41.667 0.00 0.00 45.22 2.69
1885 2274 5.306114 AGGACTACTTTGCAAGTAACCTT 57.694 39.130 17.77 7.05 42.65 3.50
1894 2283 0.238289 CAAGTAACCTTGCAGTGGCG 59.762 55.000 7.62 0.00 45.35 5.69
1961 2350 8.177119 TGCATAAACAGGAGTTAGAATTTTGT 57.823 30.769 0.00 0.00 36.84 2.83
2001 2390 8.543774 CGACATGGACTAGAAACAAGAATTATC 58.456 37.037 0.00 0.00 0.00 1.75
2026 2415 4.319839 GCTCAAAGCAAGTAGGAACTTCAC 60.320 45.833 0.00 0.00 44.28 3.18
2040 2429 6.681777 AGGAACTTCACTAACATTTGCAATC 58.318 36.000 0.00 0.00 27.25 2.67
2085 2474 0.236711 CTCTTGCGCAAGTGACCAAG 59.763 55.000 40.37 28.45 39.38 3.61
2152 2544 6.183360 CCAATAATTAGCCAAACGTACCCATT 60.183 38.462 0.00 0.00 0.00 3.16
2157 2549 8.522542 AATTAGCCAAACGTACCCATTAAATA 57.477 30.769 0.00 0.00 0.00 1.40
2158 2550 7.556733 TTAGCCAAACGTACCCATTAAATAG 57.443 36.000 0.00 0.00 0.00 1.73
2159 2551 5.503002 AGCCAAACGTACCCATTAAATAGT 58.497 37.500 0.00 0.00 0.00 2.12
2160 2552 6.652053 AGCCAAACGTACCCATTAAATAGTA 58.348 36.000 0.00 0.00 0.00 1.82
2161 2553 6.539826 AGCCAAACGTACCCATTAAATAGTAC 59.460 38.462 0.00 0.00 33.36 2.73
2162 2554 6.539826 GCCAAACGTACCCATTAAATAGTACT 59.460 38.462 0.00 0.00 34.30 2.73
2163 2555 7.254556 GCCAAACGTACCCATTAAATAGTACTC 60.255 40.741 0.00 0.00 34.30 2.59
2164 2556 7.225341 CCAAACGTACCCATTAAATAGTACTCC 59.775 40.741 0.00 0.00 34.30 3.85
2165 2557 6.410942 ACGTACCCATTAAATAGTACTCCC 57.589 41.667 0.00 0.00 34.30 4.30
2166 2558 6.138967 ACGTACCCATTAAATAGTACTCCCT 58.861 40.000 0.00 0.00 34.30 4.20
2167 2559 6.266330 ACGTACCCATTAAATAGTACTCCCTC 59.734 42.308 0.00 0.00 34.30 4.30
2168 2560 6.294955 CGTACCCATTAAATAGTACTCCCTCC 60.295 46.154 0.00 0.00 34.30 4.30
2169 2561 5.544682 ACCCATTAAATAGTACTCCCTCCA 58.455 41.667 0.00 0.00 0.00 3.86
2170 2562 6.158260 ACCCATTAAATAGTACTCCCTCCAT 58.842 40.000 0.00 0.00 0.00 3.41
2171 2563 6.624021 ACCCATTAAATAGTACTCCCTCCATT 59.376 38.462 0.00 0.00 0.00 3.16
2172 2564 7.168905 CCCATTAAATAGTACTCCCTCCATTC 58.831 42.308 0.00 0.00 0.00 2.67
2173 2565 6.874134 CCATTAAATAGTACTCCCTCCATTCG 59.126 42.308 0.00 0.00 0.00 3.34
2174 2566 4.957684 AAATAGTACTCCCTCCATTCGG 57.042 45.455 0.00 0.00 0.00 4.30
2175 2567 3.897657 ATAGTACTCCCTCCATTCGGA 57.102 47.619 0.00 0.00 39.79 4.55
2176 2568 2.544844 AGTACTCCCTCCATTCGGAA 57.455 50.000 0.00 0.00 42.21 4.30
2177 2569 3.047695 AGTACTCCCTCCATTCGGAAT 57.952 47.619 0.00 0.00 42.21 3.01
2178 2570 3.385115 AGTACTCCCTCCATTCGGAATT 58.615 45.455 0.00 0.00 42.21 2.17
2179 2571 4.553678 AGTACTCCCTCCATTCGGAATTA 58.446 43.478 0.00 0.00 42.21 1.40
2180 2572 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
2181 2573 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
2182 2574 3.388350 ACTCCCTCCATTCGGAATTACTC 59.612 47.826 0.00 0.00 42.21 2.59
2183 2575 2.364324 TCCCTCCATTCGGAATTACTCG 59.636 50.000 0.00 0.00 42.21 4.18
2184 2576 2.102588 CCCTCCATTCGGAATTACTCGT 59.897 50.000 0.00 0.00 42.21 4.18
2185 2577 3.381949 CCTCCATTCGGAATTACTCGTC 58.618 50.000 0.00 0.00 42.21 4.20
2186 2578 3.181479 CCTCCATTCGGAATTACTCGTCA 60.181 47.826 0.00 0.00 42.21 4.35
2187 2579 4.430007 CTCCATTCGGAATTACTCGTCAA 58.570 43.478 0.00 0.00 42.21 3.18
2188 2580 4.823157 TCCATTCGGAATTACTCGTCAAA 58.177 39.130 0.00 0.00 38.83 2.69
2189 2581 5.239351 TCCATTCGGAATTACTCGTCAAAA 58.761 37.500 0.00 0.00 38.83 2.44
2190 2582 5.701750 TCCATTCGGAATTACTCGTCAAAAA 59.298 36.000 0.00 0.00 38.83 1.94
2242 2634 9.655769 CATCTAAATACATTCATTTCTTGGACG 57.344 33.333 0.00 0.00 30.84 4.79
2243 2635 9.613428 ATCTAAATACATTCATTTCTTGGACGA 57.387 29.630 0.00 0.00 30.84 4.20
2244 2636 9.098355 TCTAAATACATTCATTTCTTGGACGAG 57.902 33.333 0.00 0.00 30.84 4.18
2245 2637 7.687941 AAATACATTCATTTCTTGGACGAGT 57.312 32.000 0.00 0.00 0.00 4.18
2246 2638 8.786826 AAATACATTCATTTCTTGGACGAGTA 57.213 30.769 0.00 0.00 0.00 2.59
2247 2639 8.786826 AATACATTCATTTCTTGGACGAGTAA 57.213 30.769 0.00 0.00 0.00 2.24
2248 2640 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
2249 2641 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2250 2642 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2251 2643 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2252 2644 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2253 2645 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2254 2646 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2255 2647 4.730949 TCTTGGACGAGTAATTCCGAAT 57.269 40.909 0.00 0.00 0.00 3.34
2256 2648 4.430007 TCTTGGACGAGTAATTCCGAATG 58.570 43.478 0.00 0.00 0.00 2.67
2257 2649 3.173668 TGGACGAGTAATTCCGAATGG 57.826 47.619 0.00 0.00 0.00 3.16
2258 2650 2.761767 TGGACGAGTAATTCCGAATGGA 59.238 45.455 0.00 0.00 44.61 3.41
2295 2687 1.962807 TGGTGCACTGAAAAGGAATGG 59.037 47.619 17.98 0.00 0.00 3.16
2308 2700 5.324832 AAAGGAATGGTCTCCAGAAGAAA 57.675 39.130 0.00 0.00 36.75 2.52
2340 2732 1.288508 TGGAAGCCACATATGCCCCT 61.289 55.000 1.58 0.00 0.00 4.79
2442 2834 3.490348 TGACTCATGACTCACTGACTCA 58.510 45.455 1.33 0.00 0.00 3.41
2503 2895 5.460419 GCTTCGACAAATCAGTCTACCATAG 59.540 44.000 0.00 0.00 36.38 2.23
2526 2918 7.721286 AGAACTTGAATAATAGCTTGATCGG 57.279 36.000 0.00 0.00 0.00 4.18
2539 2931 0.963225 TGATCGGTCCGTCTTGAACA 59.037 50.000 11.88 0.00 0.00 3.18
2547 2939 4.250464 GGTCCGTCTTGAACACAATATGA 58.750 43.478 0.00 0.00 0.00 2.15
2566 2958 4.424061 TGAACTCAGCAACAATACATGC 57.576 40.909 0.00 0.00 42.87 4.06
2568 2960 3.837213 ACTCAGCAACAATACATGCAC 57.163 42.857 0.00 0.00 44.95 4.57
2569 2961 2.160219 ACTCAGCAACAATACATGCACG 59.840 45.455 0.00 0.00 44.95 5.34
2585 2977 1.795872 GCACGCACTACATAACACACA 59.204 47.619 0.00 0.00 0.00 3.72
3098 3491 4.006319 CTCTCAGTTTTGGGAAGATGACC 58.994 47.826 0.00 0.00 32.16 4.02
3099 3492 3.652869 TCTCAGTTTTGGGAAGATGACCT 59.347 43.478 0.00 0.00 28.50 3.85
3336 3760 0.665835 GGGACAAATTCGCACACACA 59.334 50.000 0.00 0.00 37.14 3.72
3419 3846 4.221262 AGCATTGTTGGCACATGAAAGTAT 59.779 37.500 0.00 0.00 39.30 2.12
3420 3847 5.418524 AGCATTGTTGGCACATGAAAGTATA 59.581 36.000 0.00 0.00 39.30 1.47
3421 3848 5.516339 GCATTGTTGGCACATGAAAGTATAC 59.484 40.000 0.00 0.00 39.30 1.47
3422 3849 5.637006 TTGTTGGCACATGAAAGTATACC 57.363 39.130 0.00 0.00 39.30 2.73
3423 3850 4.657013 TGTTGGCACATGAAAGTATACCA 58.343 39.130 0.00 0.00 39.30 3.25
3424 3851 5.260424 TGTTGGCACATGAAAGTATACCAT 58.740 37.500 0.00 0.00 39.30 3.55
3425 3852 6.418946 TGTTGGCACATGAAAGTATACCATA 58.581 36.000 0.00 0.00 39.30 2.74
3426 3853 6.542005 TGTTGGCACATGAAAGTATACCATAG 59.458 38.462 0.00 0.00 39.30 2.23
3427 3854 6.493189 TGGCACATGAAAGTATACCATAGA 57.507 37.500 0.00 0.00 0.00 1.98
3445 3872 1.831736 AGATTAACTGGGGAGTGGTCG 59.168 52.381 0.00 0.00 0.00 4.79
3461 3888 1.537776 GGTCGCTCATGAGGTCTGATG 60.538 57.143 23.89 0.00 0.00 3.07
3462 3889 1.406898 GTCGCTCATGAGGTCTGATGA 59.593 52.381 23.89 0.63 32.48 2.92
3463 3890 1.406898 TCGCTCATGAGGTCTGATGAC 59.593 52.381 23.89 3.18 42.22 3.06
3482 3911 9.133627 CTGATGACCGAATATGTATTTACTCAG 57.866 37.037 0.00 0.00 0.00 3.35
3489 3918 7.361201 CCGAATATGTATTTACTCAGCAATGGG 60.361 40.741 0.00 0.00 0.00 4.00
3514 3943 4.801330 AACCTTGGCCACTAAAATTAGC 57.199 40.909 3.88 0.00 34.09 3.09
3519 3948 4.027674 TGGCCACTAAAATTAGCAGTCA 57.972 40.909 0.00 0.00 34.09 3.41
3634 4063 2.243602 TGACCACTACCACCGTTTTC 57.756 50.000 0.00 0.00 0.00 2.29
3664 4093 6.731467 TCTCCTTTTTGGAAATATAGGCACT 58.269 36.000 0.00 0.00 45.63 4.40
3665 4094 7.867921 TCTCCTTTTTGGAAATATAGGCACTA 58.132 34.615 0.00 0.00 45.41 2.74
3698 4127 9.170734 AGCGCATCAAGATGATACATAATATTT 57.829 29.630 11.47 0.00 41.20 1.40
3713 4142 4.468095 AATATTTCGTAGAATGTGCCGC 57.532 40.909 0.00 0.00 45.90 6.53
3767 4196 6.533723 CACACGTTGTACAATATACTCATGGT 59.466 38.462 12.26 0.00 0.00 3.55
3786 4215 6.708949 TCATGGTCCTTGAAACAACTAACTAC 59.291 38.462 4.99 0.00 0.00 2.73
3881 5652 7.390440 CGGATTCTCCCAAGTATGCATTATTAA 59.610 37.037 3.54 0.00 31.13 1.40
3903 5674 0.318955 CAAGTTTTCTGCGCCCCTTG 60.319 55.000 4.18 4.26 0.00 3.61
3988 5763 5.932303 ACTAACAGTAATAGCCTTGTGTGTG 59.068 40.000 0.00 0.00 0.00 3.82
3991 5766 5.130350 ACAGTAATAGCCTTGTGTGTGTTT 58.870 37.500 0.00 0.00 0.00 2.83
4035 5811 1.303561 GTCAACCCAGCAGGCATCA 60.304 57.895 0.00 0.00 40.58 3.07
4080 5856 3.084786 GCACTCCTAGCAAAAGGTGAAT 58.915 45.455 8.34 0.00 37.91 2.57
4085 5861 7.657336 CACTCCTAGCAAAAGGTGAATTTTTA 58.343 34.615 8.34 0.00 37.91 1.52
4090 5866 9.921637 CCTAGCAAAAGGTGAATTTTTATACAA 57.078 29.630 0.00 0.00 30.01 2.41
4148 5924 9.774742 GAAGTTTTATCGAAAATAACTGCTGAT 57.225 29.630 0.00 0.00 36.92 2.90
4165 6490 7.989826 ACTGCTGATTCCAAATTAGTTATGAC 58.010 34.615 0.00 0.00 0.00 3.06
4167 6492 6.889177 TGCTGATTCCAAATTAGTTATGACCA 59.111 34.615 0.00 0.00 0.00 4.02
4168 6493 7.560991 TGCTGATTCCAAATTAGTTATGACCAT 59.439 33.333 0.00 0.00 0.00 3.55
4185 6510 5.547465 TGACCATACTAACAAGGTGAACTG 58.453 41.667 0.00 0.00 33.77 3.16
4187 6512 4.349930 ACCATACTAACAAGGTGAACTGGT 59.650 41.667 0.00 0.00 33.68 4.00
4191 6516 7.610305 CCATACTAACAAGGTGAACTGGTATTT 59.390 37.037 0.00 0.00 29.84 1.40
4194 6519 7.937649 ACTAACAAGGTGAACTGGTATTTTTC 58.062 34.615 0.00 0.00 29.84 2.29
4197 6525 7.418337 ACAAGGTGAACTGGTATTTTTCTTT 57.582 32.000 0.00 0.00 29.14 2.52
4206 6534 8.950007 AACTGGTATTTTTCTTTCAGGGATTA 57.050 30.769 0.00 0.00 0.00 1.75
4217 6545 5.364446 TCTTTCAGGGATTAAGCCGTATGTA 59.636 40.000 4.37 0.00 0.00 2.29
4268 6596 3.009033 CCCTGGAAGACAAGTACAATGGA 59.991 47.826 0.00 0.00 34.07 3.41
4399 6727 4.351938 AGCAACGACTACGCGGCA 62.352 61.111 12.47 0.00 43.96 5.69
4546 6874 3.429141 CGCCACCTCTGCTGCAAG 61.429 66.667 3.02 4.44 0.00 4.01
4606 8889 4.280436 TGAGCCGGACAAGAAAAGATAA 57.720 40.909 5.05 0.00 0.00 1.75
4628 8911 3.137533 GAGTGCCCTTATGAAGATCAGC 58.862 50.000 0.00 0.00 0.00 4.26
4632 8915 5.013913 AGTGCCCTTATGAAGATCAGCATAT 59.986 40.000 7.95 0.00 0.00 1.78
4633 8916 5.123502 GTGCCCTTATGAAGATCAGCATATG 59.876 44.000 0.00 0.00 0.00 1.78
4687 9118 5.984926 ACCACATGTATTCAAACAAGCAAAG 59.015 36.000 0.00 0.00 32.02 2.77
4702 9133 2.486918 GCAAAGGCATGCTCTGTTTTT 58.513 42.857 18.92 6.37 43.06 1.94
4724 9155 6.469782 TTTGAAAAGCAAGAACAGAGGATT 57.530 33.333 0.00 0.00 37.87 3.01
4736 9167 4.810191 ACAGAGGATTCACTGTACCTTC 57.190 45.455 1.70 0.00 41.75 3.46
4807 9238 2.231964 GAGCTGCCCATGACATCAAAAA 59.768 45.455 0.00 0.00 0.00 1.94
4870 9301 3.067320 CAGAGTTCATGTATCTCTCGCCA 59.933 47.826 11.74 0.00 36.57 5.69
4954 9385 3.690139 AGAGACTCGCGAAATCAGAACTA 59.310 43.478 19.08 0.00 0.00 2.24
5040 9472 4.683334 GCAGCGACGTTTGCACCC 62.683 66.667 17.63 0.83 40.02 4.61
5055 9487 1.456892 ACCCGAGGATATGCCGACA 60.457 57.895 6.66 0.00 43.43 4.35
5092 9524 3.473647 CCAGCCTCCTCGCCATCA 61.474 66.667 0.00 0.00 0.00 3.07
5314 9997 4.387026 TCTGATTGGTTGGAAGTCCATT 57.613 40.909 0.00 0.00 46.97 3.16
5317 10000 4.991776 TGATTGGTTGGAAGTCCATTACA 58.008 39.130 0.00 0.00 46.97 2.41
5318 10001 5.389520 TGATTGGTTGGAAGTCCATTACAA 58.610 37.500 0.00 7.46 46.97 2.41
5319 10002 5.476599 TGATTGGTTGGAAGTCCATTACAAG 59.523 40.000 0.00 0.00 42.56 3.16
5320 10003 4.715534 TGGTTGGAAGTCCATTACAAGA 57.284 40.909 0.00 0.00 42.56 3.02
5321 10004 5.055265 TGGTTGGAAGTCCATTACAAGAA 57.945 39.130 0.00 0.00 42.56 2.52
5322 10005 5.070001 TGGTTGGAAGTCCATTACAAGAAG 58.930 41.667 0.00 0.00 42.56 2.85
5341 10024 5.865085 AGAAGTTGAAACTAGCACCACATA 58.135 37.500 0.00 0.00 38.57 2.29
5344 10027 4.997395 AGTTGAAACTAGCACCACATAGTG 59.003 41.667 0.00 0.00 37.52 2.74
5534 10235 2.661718 GGGTCCTGAAGTTTGTTCCAA 58.338 47.619 0.00 0.00 0.00 3.53
5567 10268 3.219281 GGAGTAAACTGTTGCCCAAGAA 58.781 45.455 0.00 0.00 0.00 2.52
5569 10270 4.321230 GGAGTAAACTGTTGCCCAAGAATG 60.321 45.833 0.00 0.00 0.00 2.67
5738 10803 5.076873 GGTATAGTCTTCATCAGCTCCTCT 58.923 45.833 0.00 0.00 0.00 3.69
5829 10894 6.792424 AGACACTTTAAGTACTACTCCCTCT 58.208 40.000 0.00 0.00 0.00 3.69
5830 10895 6.660094 AGACACTTTAAGTACTACTCCCTCTG 59.340 42.308 0.00 0.00 0.00 3.35
5832 10897 7.465116 ACACTTTAAGTACTACTCCCTCTGTA 58.535 38.462 0.00 0.00 0.00 2.74
5833 10898 7.946776 ACACTTTAAGTACTACTCCCTCTGTAA 59.053 37.037 0.00 0.00 0.00 2.41
5834 10899 8.800332 CACTTTAAGTACTACTCCCTCTGTAAA 58.200 37.037 0.00 0.00 0.00 2.01
5835 10900 9.544579 ACTTTAAGTACTACTCCCTCTGTAAAT 57.455 33.333 0.00 0.00 0.00 1.40
5902 11011 9.680315 CGTTCTTATATTAGTTTACAGAGGGAG 57.320 37.037 0.00 0.00 0.00 4.30
5919 11028 7.070074 ACAGAGGGAGTACTATTTGGTTAGATG 59.930 40.741 0.00 0.00 0.00 2.90
5920 11029 7.287927 CAGAGGGAGTACTATTTGGTTAGATGA 59.712 40.741 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.175816 TCAGTGACTATATGATCTTGCTAGGAC 59.824 40.741 0.00 0.00 0.00 3.85
9 10 7.234355 TCAGTGACTATATGATCTTGCTAGGA 58.766 38.462 0.00 0.00 0.00 2.94
14 15 5.873712 CCCATCAGTGACTATATGATCTTGC 59.126 44.000 8.26 0.00 31.38 4.01
22 23 3.861846 TGGAGCCCATCAGTGACTATAT 58.138 45.455 0.00 0.00 0.00 0.86
23 24 3.328535 TGGAGCCCATCAGTGACTATA 57.671 47.619 0.00 0.00 0.00 1.31
52 53 9.530129 GAAATATGTTATTGGAAATCGATCGTC 57.470 33.333 15.94 5.28 0.00 4.20
65 71 9.520204 CTTACTTTGCCTGGAAATATGTTATTG 57.480 33.333 0.00 0.00 0.00 1.90
66 72 8.197439 GCTTACTTTGCCTGGAAATATGTTATT 58.803 33.333 0.00 0.00 0.00 1.40
67 73 7.201911 GGCTTACTTTGCCTGGAAATATGTTAT 60.202 37.037 0.00 0.00 46.38 1.89
68 74 6.096282 GGCTTACTTTGCCTGGAAATATGTTA 59.904 38.462 0.00 0.00 46.38 2.41
104 134 4.517952 TTGCCACAACAACATCCTTATG 57.482 40.909 0.00 0.00 39.17 1.90
128 158 2.203611 TGGGGGTTGCACCACATG 60.204 61.111 9.38 0.00 45.79 3.21
133 163 0.606096 GTATTTGTGGGGGTTGCACC 59.394 55.000 0.00 0.00 37.60 5.01
138 168 0.323087 GCCGAGTATTTGTGGGGGTT 60.323 55.000 0.00 0.00 0.00 4.11
140 170 0.834612 TAGCCGAGTATTTGTGGGGG 59.165 55.000 0.00 0.00 0.00 5.40
147 177 8.036273 TCTTTCGAAAATTTAGCCGAGTATTT 57.964 30.769 12.41 0.00 32.41 1.40
181 211 4.518278 TTTGTGTGCTATACCATGGGAT 57.482 40.909 15.58 15.58 0.00 3.85
182 212 4.308526 TTTTGTGTGCTATACCATGGGA 57.691 40.909 18.09 8.35 0.00 4.37
190 220 7.223971 GTCACGGATCTATTTTTGTGTGCTATA 59.776 37.037 0.00 0.00 0.00 1.31
191 221 6.037172 GTCACGGATCTATTTTTGTGTGCTAT 59.963 38.462 0.00 0.00 0.00 2.97
192 222 5.350365 GTCACGGATCTATTTTTGTGTGCTA 59.650 40.000 0.00 0.00 0.00 3.49
196 226 4.647611 TGGTCACGGATCTATTTTTGTGT 58.352 39.130 0.00 0.00 0.00 3.72
214 244 0.543277 TGAGCTGTGGGATCATGGTC 59.457 55.000 0.00 0.00 35.23 4.02
226 256 7.393234 GGATAGACTAGTCATCTAATGAGCTGT 59.607 40.741 24.44 1.44 40.53 4.40
242 272 3.571590 ACTTGGCCTCTGGATAGACTAG 58.428 50.000 3.32 0.00 0.00 2.57
247 277 5.300286 CCAAATTTACTTGGCCTCTGGATAG 59.700 44.000 3.32 0.00 39.55 2.08
290 320 5.511729 GTCGCCAACTCTTGTATAATTTTGC 59.488 40.000 0.00 0.00 0.00 3.68
380 722 1.789523 TTTCCGAGCTATGGCCTACT 58.210 50.000 3.32 0.00 39.73 2.57
390 732 2.223409 GGTTTTCGTTGTTTTCCGAGCT 60.223 45.455 0.00 0.00 34.16 4.09
395 737 3.129813 ACCTCAGGTTTTCGTTGTTTTCC 59.870 43.478 0.00 0.00 27.29 3.13
409 751 1.608590 CGCATCAACAAAACCTCAGGT 59.391 47.619 0.00 0.00 37.65 4.00
458 801 8.642908 TTGTATGTAGTATCCATGTCTTTTCG 57.357 34.615 0.00 0.00 0.00 3.46
467 810 5.887214 TGTGGCTTGTATGTAGTATCCAT 57.113 39.130 0.00 0.00 0.00 3.41
472 815 7.826744 TCATCATTTTGTGGCTTGTATGTAGTA 59.173 33.333 0.00 0.00 0.00 1.82
477 820 6.127814 ACTCTCATCATTTTGTGGCTTGTATG 60.128 38.462 0.00 0.00 0.00 2.39
481 824 4.778534 ACTCTCATCATTTTGTGGCTTG 57.221 40.909 0.00 0.00 0.00 4.01
483 826 6.626623 GCAAATACTCTCATCATTTTGTGGCT 60.627 38.462 0.00 0.00 0.00 4.75
491 834 6.699204 CAGTACGAGCAAATACTCTCATCATT 59.301 38.462 0.00 0.00 34.35 2.57
522 865 1.654105 CACACTCGTACTCGATTTGGC 59.346 52.381 0.00 0.00 45.21 4.52
541 884 2.159014 AGTTGGTAGACTGAACGCAACA 60.159 45.455 0.00 0.00 33.84 3.33
562 905 5.755409 TGCAGGAAAGATAGGTAAGACAA 57.245 39.130 0.00 0.00 0.00 3.18
568 911 4.820775 AGAGGATGCAGGAAAGATAGGTA 58.179 43.478 0.00 0.00 0.00 3.08
569 912 3.663198 AGAGGATGCAGGAAAGATAGGT 58.337 45.455 0.00 0.00 0.00 3.08
571 914 4.305769 CGAAGAGGATGCAGGAAAGATAG 58.694 47.826 0.00 0.00 0.00 2.08
572 915 3.493350 GCGAAGAGGATGCAGGAAAGATA 60.493 47.826 0.00 0.00 0.00 1.98
574 917 1.406069 GCGAAGAGGATGCAGGAAAGA 60.406 52.381 0.00 0.00 0.00 2.52
578 921 0.176680 GAAGCGAAGAGGATGCAGGA 59.823 55.000 0.00 0.00 0.00 3.86
580 923 1.136695 AGAGAAGCGAAGAGGATGCAG 59.863 52.381 0.00 0.00 0.00 4.41
592 935 1.074752 GCCAGACAAGAAGAGAAGCG 58.925 55.000 0.00 0.00 0.00 4.68
594 937 2.421619 GTGGCCAGACAAGAAGAGAAG 58.578 52.381 5.11 0.00 0.00 2.85
619 962 2.356665 TGTTGTTGCTTTCTGGGCTA 57.643 45.000 0.00 0.00 0.00 3.93
623 966 1.854126 CGCTTTGTTGTTGCTTTCTGG 59.146 47.619 0.00 0.00 0.00 3.86
643 986 0.388659 TGTGTGTTGCCTTGGATTGC 59.611 50.000 0.00 0.00 0.00 3.56
647 990 1.488812 AGTACTGTGTGTTGCCTTGGA 59.511 47.619 0.00 0.00 0.00 3.53
650 993 2.710096 ACAGTACTGTGTGTTGCCTT 57.290 45.000 27.41 0.00 43.11 4.35
670 1013 0.245539 CATGGTGGAGGAACGTACGT 59.754 55.000 16.72 16.72 0.00 3.57
671 1014 1.082117 GCATGGTGGAGGAACGTACG 61.082 60.000 15.01 15.01 0.00 3.67
691 1034 3.192212 GCAAGGAAGGATCTGGTTTGAAG 59.808 47.826 0.00 0.00 0.00 3.02
697 1040 2.503895 CTTGCAAGGAAGGATCTGGT 57.496 50.000 19.14 0.00 0.00 4.00
727 1070 7.437267 GCACATGTATTTATCCGTTAGTGTACT 59.563 37.037 0.00 0.00 0.00 2.73
772 1115 5.636123 AGTTGGACGAGTAGATGGATAGAT 58.364 41.667 0.00 0.00 0.00 1.98
773 1116 5.050126 AGTTGGACGAGTAGATGGATAGA 57.950 43.478 0.00 0.00 0.00 1.98
848 1196 4.322567 AGCAAGAGGAATGTTTCAGAGAC 58.677 43.478 0.00 0.00 0.00 3.36
855 1203 5.013599 ACTCTCCTAAGCAAGAGGAATGTTT 59.986 40.000 4.57 0.00 42.63 2.83
869 1217 2.814336 GGGCAACAAACACTCTCCTAAG 59.186 50.000 0.00 0.00 39.74 2.18
907 1283 1.067565 GCCAAAGAAGCTAGCAAACCC 60.068 52.381 18.83 0.63 0.00 4.11
920 1296 1.074889 GTTGGTTAGGAGGGCCAAAGA 59.925 52.381 6.18 0.00 42.98 2.52
944 1320 7.930325 AGAGTCTGATGTTTGATATATGTGTGG 59.070 37.037 0.00 0.00 0.00 4.17
950 1326 7.293299 TCCCCAAGAGTCTGATGTTTGATATAT 59.707 37.037 0.00 0.00 0.00 0.86
1026 1404 4.038042 GTGTGAGCTAGTAGATGGCATGTA 59.962 45.833 3.81 1.28 38.00 2.29
1045 1423 6.872547 AGAGACTTATATATGCATGCTGTGTG 59.127 38.462 20.33 4.32 0.00 3.82
1046 1424 6.872547 CAGAGACTTATATATGCATGCTGTGT 59.127 38.462 20.33 8.57 0.00 3.72
1052 1430 6.034363 GCGACACAGAGACTTATATATGCATG 59.966 42.308 10.16 0.00 0.00 4.06
1147 1527 2.480610 AACCACACCACAAGCAGCG 61.481 57.895 0.00 0.00 0.00 5.18
1149 1529 1.735360 CCAACCACACCACAAGCAG 59.265 57.895 0.00 0.00 0.00 4.24
1208 1588 2.780010 CAGATTACCATTCCCACTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
1222 1602 2.393646 AGCTCCCTCTGGTCAGATTAC 58.606 52.381 0.75 0.00 36.76 1.89
1379 1765 9.162764 ACACTAGCCAATTAAGTAACAATAGTG 57.837 33.333 0.00 0.00 35.97 2.74
1381 1767 9.162764 ACACACTAGCCAATTAAGTAACAATAG 57.837 33.333 0.00 0.00 0.00 1.73
1386 1772 7.668525 AGAACACACTAGCCAATTAAGTAAC 57.331 36.000 0.00 0.00 0.00 2.50
1426 1812 0.603569 GAGAAGACAAGGGACGCTCA 59.396 55.000 0.00 0.00 0.00 4.26
1437 1823 3.184382 TCCCATACCACAGAGAAGACA 57.816 47.619 0.00 0.00 0.00 3.41
1464 1850 6.819397 ATCGGAGAAGATTGATCGTATACA 57.181 37.500 3.32 0.00 43.58 2.29
1475 1861 8.980481 AAACCATATTACAATCGGAGAAGATT 57.020 30.769 0.00 0.00 43.58 2.40
1590 1979 1.200948 GAGAAGGGTGCATGAAACAGC 59.799 52.381 0.00 0.00 34.81 4.40
1690 2079 9.897744 GATTTTGTTTGTTGAGAAGTCATCATA 57.102 29.630 0.00 0.00 33.36 2.15
1892 2281 2.500369 CATGTGACAACGCAGCGC 60.500 61.111 16.61 0.00 39.92 5.92
1894 2283 2.500369 CGCATGTGACAACGCAGC 60.500 61.111 0.00 0.40 39.92 5.25
1961 2350 4.799949 GTCCATGTCGTTAATTAGCGTGTA 59.200 41.667 19.23 9.01 0.00 2.90
2015 2404 7.665559 AGATTGCAAATGTTAGTGAAGTTCCTA 59.334 33.333 1.71 0.00 0.00 2.94
2057 2446 2.484264 ACTTGCGCAAGAGTAATTCACC 59.516 45.455 46.69 0.00 40.79 4.02
2060 2449 3.424962 GGTCACTTGCGCAAGAGTAATTC 60.425 47.826 46.69 28.63 40.79 2.17
2085 2474 2.858745 TCCTAGGTTCCTGCAAAACAC 58.141 47.619 9.08 3.95 0.00 3.32
2152 2544 5.708544 TCCGAATGGAGGGAGTACTATTTA 58.291 41.667 0.00 0.00 40.17 1.40
2166 2558 4.459390 TTGACGAGTAATTCCGAATGGA 57.541 40.909 0.00 0.00 44.61 3.41
2167 2559 5.539582 TTTTGACGAGTAATTCCGAATGG 57.460 39.130 0.00 0.00 0.00 3.16
2216 2608 9.655769 CGTCCAAGAAATGAATGTATTTAGATG 57.344 33.333 0.00 0.00 30.78 2.90
2217 2609 9.613428 TCGTCCAAGAAATGAATGTATTTAGAT 57.387 29.630 0.00 0.00 30.78 1.98
2218 2610 9.098355 CTCGTCCAAGAAATGAATGTATTTAGA 57.902 33.333 0.00 0.00 30.78 2.10
2219 2611 8.883731 ACTCGTCCAAGAAATGAATGTATTTAG 58.116 33.333 0.00 0.00 30.78 1.85
2220 2612 8.786826 ACTCGTCCAAGAAATGAATGTATTTA 57.213 30.769 0.00 0.00 30.78 1.40
2221 2613 7.687941 ACTCGTCCAAGAAATGAATGTATTT 57.312 32.000 0.00 0.00 33.19 1.40
2222 2614 8.786826 TTACTCGTCCAAGAAATGAATGTATT 57.213 30.769 0.00 0.00 0.00 1.89
2223 2615 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
2224 2616 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
2225 2617 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
2226 2618 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
2227 2619 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
2228 2620 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2229 2621 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2230 2622 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2231 2623 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
2232 2624 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
2233 2625 4.524316 TTCGGAATTACTCGTCCAAGAA 57.476 40.909 0.00 0.00 33.10 2.52
2234 2626 4.430007 CATTCGGAATTACTCGTCCAAGA 58.570 43.478 0.00 0.00 33.10 3.02
2235 2627 3.555956 CCATTCGGAATTACTCGTCCAAG 59.444 47.826 0.00 0.00 33.10 3.61
2236 2628 3.196039 TCCATTCGGAATTACTCGTCCAA 59.804 43.478 0.00 0.00 38.83 3.53
2237 2629 2.761767 TCCATTCGGAATTACTCGTCCA 59.238 45.455 0.00 0.00 38.83 4.02
2238 2630 3.381949 CTCCATTCGGAATTACTCGTCC 58.618 50.000 0.00 0.00 42.21 4.79
2239 2631 3.381949 CCTCCATTCGGAATTACTCGTC 58.618 50.000 0.00 0.00 42.21 4.20
2240 2632 2.102588 CCCTCCATTCGGAATTACTCGT 59.897 50.000 0.00 0.00 42.21 4.18
2241 2633 2.364324 TCCCTCCATTCGGAATTACTCG 59.636 50.000 0.00 0.00 42.21 4.18
2242 2634 3.388350 ACTCCCTCCATTCGGAATTACTC 59.612 47.826 0.00 0.00 42.21 2.59
2243 2635 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
2244 2636 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
2245 2637 7.808279 ATTATACTCCCTCCATTCGGAATTA 57.192 36.000 0.00 0.00 42.21 1.40
2246 2638 6.704056 ATTATACTCCCTCCATTCGGAATT 57.296 37.500 0.00 0.00 42.21 2.17
2247 2639 6.272324 TCAATTATACTCCCTCCATTCGGAAT 59.728 38.462 0.00 0.00 42.21 3.01
2248 2640 5.605069 TCAATTATACTCCCTCCATTCGGAA 59.395 40.000 0.00 0.00 42.21 4.30
2249 2641 5.011738 GTCAATTATACTCCCTCCATTCGGA 59.988 44.000 0.00 0.00 39.79 4.55
2250 2642 5.238583 GTCAATTATACTCCCTCCATTCGG 58.761 45.833 0.00 0.00 0.00 4.30
2251 2643 4.923871 CGTCAATTATACTCCCTCCATTCG 59.076 45.833 0.00 0.00 0.00 3.34
2252 2644 5.696724 CACGTCAATTATACTCCCTCCATTC 59.303 44.000 0.00 0.00 0.00 2.67
2253 2645 5.454755 CCACGTCAATTATACTCCCTCCATT 60.455 44.000 0.00 0.00 0.00 3.16
2254 2646 4.040461 CCACGTCAATTATACTCCCTCCAT 59.960 45.833 0.00 0.00 0.00 3.41
2255 2647 3.386726 CCACGTCAATTATACTCCCTCCA 59.613 47.826 0.00 0.00 0.00 3.86
2256 2648 3.387050 ACCACGTCAATTATACTCCCTCC 59.613 47.826 0.00 0.00 0.00 4.30
2257 2649 4.369182 CACCACGTCAATTATACTCCCTC 58.631 47.826 0.00 0.00 0.00 4.30
2258 2650 3.431766 GCACCACGTCAATTATACTCCCT 60.432 47.826 0.00 0.00 0.00 4.20
2259 2651 2.870411 GCACCACGTCAATTATACTCCC 59.130 50.000 0.00 0.00 0.00 4.30
2260 2652 3.308866 GTGCACCACGTCAATTATACTCC 59.691 47.826 5.22 0.00 0.00 3.85
2261 2653 4.032900 CAGTGCACCACGTCAATTATACTC 59.967 45.833 14.63 0.00 39.64 2.59
2295 2687 6.544197 ACCTTTTCTTCTTTTCTTCTGGAGAC 59.456 38.462 0.00 0.00 33.02 3.36
2308 2700 3.384789 GTGGCTTCCAACCTTTTCTTCTT 59.615 43.478 0.00 0.00 34.18 2.52
2340 2732 1.592064 TTGCAATCAAGTCGCACTCA 58.408 45.000 0.00 0.00 34.87 3.41
2472 2864 9.197694 GTAGACTGATTTGTCGAAGCATAATAT 57.802 33.333 0.00 0.00 41.47 1.28
2474 2866 6.480320 GGTAGACTGATTTGTCGAAGCATAAT 59.520 38.462 0.00 0.00 41.47 1.28
2503 2895 7.307455 GGACCGATCAAGCTATTATTCAAGTTC 60.307 40.741 0.00 0.00 0.00 3.01
2526 2918 5.408604 AGTTCATATTGTGTTCAAGACGGAC 59.591 40.000 0.00 0.00 36.97 4.79
2539 2931 7.686438 TGTATTGTTGCTGAGTTCATATTGT 57.314 32.000 0.00 0.00 0.00 2.71
2547 2939 3.365264 CGTGCATGTATTGTTGCTGAGTT 60.365 43.478 0.00 0.00 39.60 3.01
2566 2958 4.460471 TTTGTGTGTTATGTAGTGCGTG 57.540 40.909 0.00 0.00 0.00 5.34
2568 2960 4.838681 TGTTTTGTGTGTTATGTAGTGCG 58.161 39.130 0.00 0.00 0.00 5.34
2569 2961 5.629020 CCATGTTTTGTGTGTTATGTAGTGC 59.371 40.000 0.00 0.00 0.00 4.40
2585 2977 1.336148 CGATGCACACAGCCATGTTTT 60.336 47.619 0.00 0.00 44.83 2.43
3392 3819 3.419943 TCATGTGCCAACAATGCTTCTA 58.580 40.909 0.00 0.00 40.46 2.10
3397 3824 2.758009 ACTTTCATGTGCCAACAATGC 58.242 42.857 0.00 0.00 40.46 3.56
3419 3846 4.905456 CCACTCCCCAGTTAATCTATGGTA 59.095 45.833 0.00 0.00 31.85 3.25
3420 3847 3.716872 CCACTCCCCAGTTAATCTATGGT 59.283 47.826 0.00 0.00 31.85 3.55
3421 3848 3.716872 ACCACTCCCCAGTTAATCTATGG 59.283 47.826 0.00 0.00 0.00 2.74
3422 3849 4.501571 CGACCACTCCCCAGTTAATCTATG 60.502 50.000 0.00 0.00 0.00 2.23
3423 3850 3.641906 CGACCACTCCCCAGTTAATCTAT 59.358 47.826 0.00 0.00 0.00 1.98
3424 3851 3.028850 CGACCACTCCCCAGTTAATCTA 58.971 50.000 0.00 0.00 0.00 1.98
3425 3852 1.831736 CGACCACTCCCCAGTTAATCT 59.168 52.381 0.00 0.00 0.00 2.40
3426 3853 1.742750 GCGACCACTCCCCAGTTAATC 60.743 57.143 0.00 0.00 0.00 1.75
3427 3854 0.252197 GCGACCACTCCCCAGTTAAT 59.748 55.000 0.00 0.00 0.00 1.40
3434 3861 2.187946 CATGAGCGACCACTCCCC 59.812 66.667 0.00 0.00 35.72 4.81
3461 3888 7.709269 TTGCTGAGTAAATACATATTCGGTC 57.291 36.000 0.00 0.00 0.00 4.79
3462 3889 7.173218 CCATTGCTGAGTAAATACATATTCGGT 59.827 37.037 0.00 0.00 0.00 4.69
3463 3890 7.361201 CCCATTGCTGAGTAAATACATATTCGG 60.361 40.741 0.00 0.00 0.00 4.30
3464 3891 7.387673 TCCCATTGCTGAGTAAATACATATTCG 59.612 37.037 0.00 0.00 0.00 3.34
3482 3911 0.817654 GCCAAGGTTAGTCCCATTGC 59.182 55.000 0.00 0.00 36.75 3.56
3489 3918 5.977489 AATTTTAGTGGCCAAGGTTAGTC 57.023 39.130 7.24 0.00 0.00 2.59
3514 3943 9.498176 TCACCATCTTGAATCATAATATGACTG 57.502 33.333 4.93 0.00 43.01 3.51
3536 3965 9.614792 AGGTATTTGTAAGAAGATTGTATCACC 57.385 33.333 0.00 0.00 0.00 4.02
3664 4093 8.686334 TGTATCATCTTGATGCGCTAATCTATA 58.314 33.333 9.73 0.00 41.50 1.31
3665 4094 7.550712 TGTATCATCTTGATGCGCTAATCTAT 58.449 34.615 9.73 0.00 41.50 1.98
3673 4102 9.430838 GAAATATTATGTATCATCTTGATGCGC 57.569 33.333 0.00 0.00 41.50 6.09
3698 4127 2.202690 CGGCGGCACATTCTACGA 60.203 61.111 10.53 0.00 0.00 3.43
3713 4142 4.536364 AAACGCTCATGTTCATATTCGG 57.464 40.909 0.00 0.00 0.00 4.30
3767 4196 6.990349 CCTGAAGTAGTTAGTTGTTTCAAGGA 59.010 38.462 0.00 0.00 0.00 3.36
3786 4215 2.235650 TGAGCTGAATGTCCTCCTGAAG 59.764 50.000 0.00 0.00 0.00 3.02
3881 5652 1.173913 GGGGCGCAGAAAACTTGTAT 58.826 50.000 10.83 0.00 0.00 2.29
3887 5658 1.459450 TATCAAGGGGCGCAGAAAAC 58.541 50.000 10.83 0.00 0.00 2.43
3892 5663 2.023673 TCAAATTATCAAGGGGCGCAG 58.976 47.619 10.83 0.00 0.00 5.18
3903 5674 7.770897 ACAACCCTGTCTATCAGTCAAATTATC 59.229 37.037 0.00 0.00 42.19 1.75
3969 5744 5.689383 AAACACACACAAGGCTATTACTG 57.311 39.130 0.00 0.00 0.00 2.74
3991 5766 1.388547 GGCGCCATCTGGACATAAAA 58.611 50.000 24.80 0.00 37.39 1.52
4008 5784 3.901797 CTGGGTTGACCTCACCGGC 62.902 68.421 0.00 0.00 41.11 6.13
4024 5800 1.089920 GTAGTGGTTGATGCCTGCTG 58.910 55.000 0.00 0.00 0.00 4.41
4035 5811 4.787551 TCAATGACCTTGTTGTAGTGGTT 58.212 39.130 0.00 0.00 36.20 3.67
4090 5866 9.246670 TGGTCAATAATGTTTTGATCTTCAGAT 57.753 29.630 0.00 0.00 35.64 2.90
4165 6490 4.906618 ACCAGTTCACCTTGTTAGTATGG 58.093 43.478 0.00 0.00 0.00 2.74
4167 6492 9.582648 AAAAATACCAGTTCACCTTGTTAGTAT 57.417 29.630 0.00 0.00 0.00 2.12
4168 6493 8.983702 AAAAATACCAGTTCACCTTGTTAGTA 57.016 30.769 0.00 0.00 0.00 1.82
4185 6510 7.265673 GGCTTAATCCCTGAAAGAAAAATACC 58.734 38.462 0.00 0.00 34.07 2.73
4187 6512 6.661805 ACGGCTTAATCCCTGAAAGAAAAATA 59.338 34.615 0.00 0.00 34.07 1.40
4191 6516 4.028993 ACGGCTTAATCCCTGAAAGAAA 57.971 40.909 0.00 0.00 34.07 2.52
4194 6519 4.451900 ACATACGGCTTAATCCCTGAAAG 58.548 43.478 0.00 0.00 0.00 2.62
4197 6525 4.202284 GGTTACATACGGCTTAATCCCTGA 60.202 45.833 0.00 0.00 0.00 3.86
4206 6534 2.697229 GGTAGAGGGTTACATACGGCTT 59.303 50.000 0.00 0.00 0.00 4.35
4217 6545 0.546988 GGTCCCAGTGGTAGAGGGTT 60.547 60.000 8.74 0.00 43.31 4.11
4268 6596 4.097437 CACATTATCTGCCTGTCAAGCAAT 59.903 41.667 0.00 0.00 40.35 3.56
4399 6727 0.241749 TGAAACACGTCTCCGCGTAT 59.758 50.000 4.92 0.00 43.83 3.06
4420 6748 3.175710 ACCCTGTCCCCAAACGCT 61.176 61.111 0.00 0.00 0.00 5.07
4572 6900 9.031537 TCTTGTCCGGCTCAATAATTATCTATA 57.968 33.333 11.20 0.00 0.00 1.31
4573 6901 7.907389 TCTTGTCCGGCTCAATAATTATCTAT 58.093 34.615 11.20 0.00 0.00 1.98
4574 6902 7.297936 TCTTGTCCGGCTCAATAATTATCTA 57.702 36.000 11.20 0.00 0.00 1.98
4575 6903 6.174720 TCTTGTCCGGCTCAATAATTATCT 57.825 37.500 11.20 0.00 0.00 1.98
4576 6904 6.861065 TTCTTGTCCGGCTCAATAATTATC 57.139 37.500 11.20 0.00 0.00 1.75
4606 8889 3.181456 GCTGATCTTCATAAGGGCACTCT 60.181 47.826 0.00 0.00 0.00 3.24
4628 8911 9.635520 GGCTAATTGAATGGAAGAAATCATATG 57.364 33.333 0.00 0.00 0.00 1.78
4632 8915 6.664816 ACAGGCTAATTGAATGGAAGAAATCA 59.335 34.615 0.00 0.00 0.00 2.57
4633 8916 7.105241 ACAGGCTAATTGAATGGAAGAAATC 57.895 36.000 0.00 0.00 0.00 2.17
4636 8919 6.772716 GGATACAGGCTAATTGAATGGAAGAA 59.227 38.462 0.00 0.00 0.00 2.52
4702 9133 5.593909 TGAATCCTCTGTTCTTGCTTTTCAA 59.406 36.000 0.00 0.00 0.00 2.69
4703 9134 5.009010 GTGAATCCTCTGTTCTTGCTTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
4724 9155 2.035961 GTGTCAGCAGAAGGTACAGTGA 59.964 50.000 0.00 0.00 0.00 3.41
4736 9167 2.469826 TGTGTTCGTAAGTGTCAGCAG 58.530 47.619 0.00 0.00 39.48 4.24
4807 9238 5.222870 AGGGAGGAATGTGAGAATATGACT 58.777 41.667 0.00 0.00 0.00 3.41
4816 9247 3.274288 GCTTGTTAGGGAGGAATGTGAG 58.726 50.000 0.00 0.00 0.00 3.51
4870 9301 1.136828 TTACCATATTCCCCAGCGCT 58.863 50.000 2.64 2.64 0.00 5.92
4891 9322 1.408822 GGGAACGAGGGCAAGATGATT 60.409 52.381 0.00 0.00 0.00 2.57
4905 9336 2.202623 CGGCGAGAGAAGGGAACG 60.203 66.667 0.00 0.00 0.00 3.95
4954 9385 1.985473 TCATCTTTGCTGGCTGTGTT 58.015 45.000 0.00 0.00 0.00 3.32
5040 9472 0.249447 TGCTTGTCGGCATATCCTCG 60.249 55.000 0.00 0.00 37.29 4.63
5092 9524 3.402681 CACGGAGGAGGCCATGGT 61.403 66.667 14.67 0.00 0.00 3.55
5314 9997 5.526111 GTGGTGCTAGTTTCAACTTCTTGTA 59.474 40.000 0.00 0.00 40.37 2.41
5317 10000 4.523083 TGTGGTGCTAGTTTCAACTTCTT 58.477 39.130 0.00 0.00 40.37 2.52
5318 10001 4.150897 TGTGGTGCTAGTTTCAACTTCT 57.849 40.909 0.00 0.00 40.37 2.85
5319 10002 5.701290 ACTATGTGGTGCTAGTTTCAACTTC 59.299 40.000 0.00 0.00 40.37 3.01
5320 10003 5.470098 CACTATGTGGTGCTAGTTTCAACTT 59.530 40.000 0.00 0.00 40.37 2.66
5321 10004 4.997395 CACTATGTGGTGCTAGTTTCAACT 59.003 41.667 0.00 0.00 42.91 3.16
5322 10005 4.755123 ACACTATGTGGTGCTAGTTTCAAC 59.245 41.667 2.72 0.00 40.52 3.18
5341 10024 4.172807 TCAGGTAATCCCTTAACCACACT 58.827 43.478 0.00 0.00 42.73 3.55
5344 10027 7.612633 TGTAATTTCAGGTAATCCCTTAACCAC 59.387 37.037 0.00 0.00 42.73 4.16
5534 10235 9.423061 GCAACAGTTTACTCCATTATCATTTTT 57.577 29.630 0.00 0.00 0.00 1.94
5738 10803 6.071051 GGTTTAAAGGAATGATTGGCAAGGTA 60.071 38.462 5.96 0.00 0.00 3.08
5874 10939 9.813446 CCCTCTGTAAACTAATATAAGAACGTT 57.187 33.333 0.00 0.00 0.00 3.99
5888 10997 6.729569 ACCAAATAGTACTCCCTCTGTAAACT 59.270 38.462 0.00 0.00 0.00 2.66
5891 11000 8.117956 TCTAACCAAATAGTACTCCCTCTGTAA 58.882 37.037 0.00 0.00 0.00 2.41
5892 11001 7.645942 TCTAACCAAATAGTACTCCCTCTGTA 58.354 38.462 0.00 0.00 0.00 2.74
5895 11004 7.363031 TCATCTAACCAAATAGTACTCCCTCT 58.637 38.462 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.