Multiple sequence alignment - TraesCS7A01G359000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G359000 chr7A 100.000 2357 0 0 1 2357 532735774 532733418 0.000000e+00 4353
1 TraesCS7A01G359000 chr7A 86.538 260 33 2 104 361 699735885 699736144 3.830000e-73 285
2 TraesCS7A01G359000 chr7B 89.069 1546 130 21 688 2219 491150580 491152100 0.000000e+00 1882
3 TraesCS7A01G359000 chr7B 88.041 393 41 4 1966 2357 491153072 491153459 5.940000e-126 460
4 TraesCS7A01G359000 chr7D 91.560 936 37 12 695 1623 467717330 467718230 0.000000e+00 1253
5 TraesCS7A01G359000 chr7D 88.000 475 49 7 1887 2357 467718975 467719445 2.650000e-154 555
6 TraesCS7A01G359000 chr7D 87.451 255 30 2 114 366 363048674 363048928 2.290000e-75 292
7 TraesCS7A01G359000 chr7D 92.683 205 10 3 1619 1822 467718297 467718497 8.240000e-75 291
8 TraesCS7A01G359000 chr4D 90.361 249 23 1 114 361 145579756 145579508 2.260000e-85 326
9 TraesCS7A01G359000 chr4D 82.883 222 34 3 1856 2074 499835721 499835941 1.850000e-46 196
10 TraesCS7A01G359000 chr2A 88.258 264 25 6 97 356 193703022 193703283 6.330000e-81 311
11 TraesCS7A01G359000 chr6D 89.113 248 26 1 114 360 348087849 348087602 8.180000e-80 307
12 TraesCS7A01G359000 chr6D 88.353 249 26 2 114 361 408691751 408691505 1.770000e-76 296
13 TraesCS7A01G359000 chr6D 92.899 169 12 0 379 547 406391525 406391357 1.810000e-61 246
14 TraesCS7A01G359000 chr3B 89.388 245 23 3 114 356 741566229 741566472 2.940000e-79 305
15 TraesCS7A01G359000 chr5D 89.167 240 25 1 114 352 443651581 443651820 4.920000e-77 298
16 TraesCS7A01G359000 chr5D 79.498 239 49 0 1839 2077 199738684 199738922 1.120000e-38 171
17 TraesCS7A01G359000 chr1A 87.259 259 29 3 104 359 464856241 464855984 2.290000e-75 292
18 TraesCS7A01G359000 chr5B 93.333 165 11 0 381 545 427931202 427931366 6.510000e-61 244
19 TraesCS7A01G359000 chr4B 91.111 180 16 0 378 557 638578534 638578713 6.510000e-61 244
20 TraesCS7A01G359000 chr4B 81.140 228 39 3 1828 2053 106231386 106231161 1.860000e-41 180
21 TraesCS7A01G359000 chr2B 92.398 171 13 0 378 548 719520502 719520672 6.510000e-61 244
22 TraesCS7A01G359000 chrUn 94.304 158 7 2 375 530 362727633 362727790 8.420000e-60 241
23 TraesCS7A01G359000 chrUn 81.624 234 38 5 1822 2053 78112798 78113028 3.090000e-44 189
24 TraesCS7A01G359000 chr5A 91.525 177 12 3 369 545 616478416 616478589 8.420000e-60 241
25 TraesCS7A01G359000 chr2D 91.429 175 15 0 374 548 351985606 351985780 8.420000e-60 241
26 TraesCS7A01G359000 chr2D 91.429 175 15 0 374 548 575354302 575354476 8.420000e-60 241
27 TraesCS7A01G359000 chr1D 91.477 176 13 2 374 549 423269501 423269674 8.420000e-60 241
28 TraesCS7A01G359000 chr6B 82.083 240 43 0 1838 2077 670288572 670288811 3.070000e-49 206
29 TraesCS7A01G359000 chr6B 81.624 234 38 5 1822 2053 149610637 149610407 3.090000e-44 189
30 TraesCS7A01G359000 chr6B 79.918 244 45 4 1836 2077 621304048 621304289 2.410000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G359000 chr7A 532733418 532735774 2356 True 4353.000000 4353 100.000000 1 2357 1 chr7A.!!$R1 2356
1 TraesCS7A01G359000 chr7B 491150580 491153459 2879 False 1171.000000 1882 88.555000 688 2357 2 chr7B.!!$F1 1669
2 TraesCS7A01G359000 chr7D 467717330 467719445 2115 False 699.666667 1253 90.747667 695 2357 3 chr7D.!!$F2 1662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 681 0.03467 AGCCTTTGATGGAGCAGGTC 60.035 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1559 0.250038 TGGTCAAGACAGTCTGCAGC 60.25 55.0 9.47 4.26 0.0 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.370609 GCGAGAGGCTAAGAAAACCC 58.629 55.000 0.00 0.00 39.11 4.11
22 23 1.066071 GCGAGAGGCTAAGAAAACCCT 60.066 52.381 0.00 0.00 39.11 4.34
23 24 2.167900 GCGAGAGGCTAAGAAAACCCTA 59.832 50.000 0.00 0.00 39.11 3.53
24 25 3.738590 GCGAGAGGCTAAGAAAACCCTAG 60.739 52.174 0.00 0.00 39.11 3.02
25 26 3.738590 CGAGAGGCTAAGAAAACCCTAGC 60.739 52.174 0.00 0.00 0.00 3.42
26 27 2.168728 AGAGGCTAAGAAAACCCTAGCG 59.831 50.000 0.00 0.00 34.82 4.26
27 28 2.167900 GAGGCTAAGAAAACCCTAGCGA 59.832 50.000 0.00 0.00 34.82 4.93
28 29 2.168728 AGGCTAAGAAAACCCTAGCGAG 59.831 50.000 0.00 0.00 34.82 5.03
29 30 2.167900 GGCTAAGAAAACCCTAGCGAGA 59.832 50.000 0.00 0.00 34.82 4.04
30 31 3.449632 GCTAAGAAAACCCTAGCGAGAG 58.550 50.000 0.00 0.00 0.00 3.20
31 32 3.119065 GCTAAGAAAACCCTAGCGAGAGT 60.119 47.826 0.00 0.00 0.00 3.24
32 33 3.596310 AAGAAAACCCTAGCGAGAGTC 57.404 47.619 0.00 0.00 0.00 3.36
33 34 1.473278 AGAAAACCCTAGCGAGAGTCG 59.527 52.381 0.00 0.00 43.89 4.18
42 43 3.201494 CGAGAGTCGCATGGGTCT 58.799 61.111 9.18 9.18 31.14 3.85
43 44 1.513158 CGAGAGTCGCATGGGTCTT 59.487 57.895 10.62 2.12 31.14 3.01
44 45 0.108615 CGAGAGTCGCATGGGTCTTT 60.109 55.000 10.62 5.46 31.14 2.52
45 46 1.363744 GAGAGTCGCATGGGTCTTTG 58.636 55.000 10.62 0.00 0.00 2.77
46 47 0.674895 AGAGTCGCATGGGTCTTTGC 60.675 55.000 10.62 0.00 35.50 3.68
47 48 1.648467 GAGTCGCATGGGTCTTTGCC 61.648 60.000 10.62 0.00 35.41 4.52
48 49 1.675641 GTCGCATGGGTCTTTGCCT 60.676 57.895 9.86 0.00 35.41 4.75
49 50 1.377202 TCGCATGGGTCTTTGCCTC 60.377 57.895 9.86 0.00 35.41 4.70
50 51 1.377725 CGCATGGGTCTTTGCCTCT 60.378 57.895 0.68 0.00 35.41 3.69
51 52 1.372087 CGCATGGGTCTTTGCCTCTC 61.372 60.000 0.68 0.00 35.41 3.20
52 53 1.372087 GCATGGGTCTTTGCCTCTCG 61.372 60.000 0.00 0.00 32.66 4.04
53 54 1.078143 ATGGGTCTTTGCCTCTCGC 60.078 57.895 0.00 0.00 38.31 5.03
67 68 2.502213 TCTCGCACGAGAGAAAAACA 57.498 45.000 18.22 0.00 45.26 2.83
68 69 3.026630 TCTCGCACGAGAGAAAAACAT 57.973 42.857 18.22 0.00 45.26 2.71
69 70 4.168922 TCTCGCACGAGAGAAAAACATA 57.831 40.909 18.22 0.00 45.26 2.29
70 71 4.552355 TCTCGCACGAGAGAAAAACATAA 58.448 39.130 18.22 0.00 45.26 1.90
71 72 4.621460 TCTCGCACGAGAGAAAAACATAAG 59.379 41.667 18.22 0.00 45.26 1.73
72 73 4.304110 TCGCACGAGAGAAAAACATAAGT 58.696 39.130 0.00 0.00 0.00 2.24
73 74 5.463286 TCGCACGAGAGAAAAACATAAGTA 58.537 37.500 0.00 0.00 0.00 2.24
74 75 5.344128 TCGCACGAGAGAAAAACATAAGTAC 59.656 40.000 0.00 0.00 0.00 2.73
75 76 5.345202 CGCACGAGAGAAAAACATAAGTACT 59.655 40.000 0.00 0.00 0.00 2.73
76 77 6.525628 CGCACGAGAGAAAAACATAAGTACTA 59.474 38.462 0.00 0.00 0.00 1.82
77 78 7.220300 CGCACGAGAGAAAAACATAAGTACTAT 59.780 37.037 0.00 0.00 0.00 2.12
78 79 9.512435 GCACGAGAGAAAAACATAAGTACTATA 57.488 33.333 0.00 0.00 0.00 1.31
95 96 8.668510 AGTACTATAACATCCAAATTGAGCTG 57.331 34.615 0.00 0.00 0.00 4.24
96 97 8.486210 AGTACTATAACATCCAAATTGAGCTGA 58.514 33.333 0.00 0.00 0.00 4.26
97 98 9.109393 GTACTATAACATCCAAATTGAGCTGAA 57.891 33.333 0.00 0.00 0.00 3.02
98 99 8.579850 ACTATAACATCCAAATTGAGCTGAAA 57.420 30.769 0.00 0.00 0.00 2.69
99 100 9.193806 ACTATAACATCCAAATTGAGCTGAAAT 57.806 29.630 0.00 0.00 0.00 2.17
103 104 7.472334 ACATCCAAATTGAGCTGAAATTAGT 57.528 32.000 0.00 0.00 0.00 2.24
104 105 7.318141 ACATCCAAATTGAGCTGAAATTAGTG 58.682 34.615 0.00 0.00 0.00 2.74
105 106 5.713025 TCCAAATTGAGCTGAAATTAGTGC 58.287 37.500 0.00 0.00 0.00 4.40
106 107 5.477984 TCCAAATTGAGCTGAAATTAGTGCT 59.522 36.000 0.00 0.00 38.59 4.40
107 108 6.015180 TCCAAATTGAGCTGAAATTAGTGCTT 60.015 34.615 0.00 0.00 35.76 3.91
108 109 6.309737 CCAAATTGAGCTGAAATTAGTGCTTC 59.690 38.462 0.00 0.00 35.76 3.86
109 110 5.573337 ATTGAGCTGAAATTAGTGCTTCC 57.427 39.130 0.00 0.00 35.76 3.46
110 111 4.292186 TGAGCTGAAATTAGTGCTTCCT 57.708 40.909 0.00 0.00 35.76 3.36
111 112 4.655963 TGAGCTGAAATTAGTGCTTCCTT 58.344 39.130 0.00 0.00 35.76 3.36
112 113 4.697352 TGAGCTGAAATTAGTGCTTCCTTC 59.303 41.667 0.00 0.00 35.76 3.46
113 114 4.916183 AGCTGAAATTAGTGCTTCCTTCT 58.084 39.130 0.00 0.00 30.96 2.85
114 115 5.320277 AGCTGAAATTAGTGCTTCCTTCTT 58.680 37.500 0.00 0.00 30.96 2.52
115 116 5.772169 AGCTGAAATTAGTGCTTCCTTCTTT 59.228 36.000 0.00 0.00 30.96 2.52
116 117 6.266330 AGCTGAAATTAGTGCTTCCTTCTTTT 59.734 34.615 0.00 0.00 30.96 2.27
117 118 6.925718 GCTGAAATTAGTGCTTCCTTCTTTTT 59.074 34.615 0.00 0.00 0.00 1.94
118 119 8.082242 GCTGAAATTAGTGCTTCCTTCTTTTTA 58.918 33.333 0.00 0.00 0.00 1.52
126 127 8.112016 AGTGCTTCCTTCTTTTTATTTACTCC 57.888 34.615 0.00 0.00 0.00 3.85
127 128 7.724061 AGTGCTTCCTTCTTTTTATTTACTCCA 59.276 33.333 0.00 0.00 0.00 3.86
128 129 7.808381 GTGCTTCCTTCTTTTTATTTACTCCAC 59.192 37.037 0.00 0.00 0.00 4.02
129 130 7.504238 TGCTTCCTTCTTTTTATTTACTCCACA 59.496 33.333 0.00 0.00 0.00 4.17
130 131 8.523658 GCTTCCTTCTTTTTATTTACTCCACAT 58.476 33.333 0.00 0.00 0.00 3.21
144 145 8.492673 TTTACTCCACATATTAGCTTTGACTG 57.507 34.615 0.00 0.00 0.00 3.51
145 146 6.299805 ACTCCACATATTAGCTTTGACTGA 57.700 37.500 0.00 0.00 0.00 3.41
146 147 6.711277 ACTCCACATATTAGCTTTGACTGAA 58.289 36.000 0.00 0.00 0.00 3.02
147 148 6.820656 ACTCCACATATTAGCTTTGACTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
148 149 6.711277 TCCACATATTAGCTTTGACTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
149 150 6.818644 TCCACATATTAGCTTTGACTGAAGTC 59.181 38.462 3.41 3.41 44.97 3.01
244 245 9.955208 TGTGAAAATATATGCAATGATGAACTC 57.045 29.630 0.00 0.00 0.00 3.01
245 246 9.110617 GTGAAAATATATGCAATGATGAACTCG 57.889 33.333 0.00 0.00 0.00 4.18
246 247 8.291740 TGAAAATATATGCAATGATGAACTCGG 58.708 33.333 0.00 0.00 0.00 4.63
247 248 7.750229 AAATATATGCAATGATGAACTCGGT 57.250 32.000 0.00 0.00 0.00 4.69
248 249 6.732531 ATATATGCAATGATGAACTCGGTG 57.267 37.500 0.00 0.00 0.00 4.94
249 250 2.470983 TGCAATGATGAACTCGGTGA 57.529 45.000 0.00 0.00 0.00 4.02
250 251 2.989909 TGCAATGATGAACTCGGTGAT 58.010 42.857 0.00 0.00 0.00 3.06
251 252 4.135747 TGCAATGATGAACTCGGTGATA 57.864 40.909 0.00 0.00 0.00 2.15
252 253 4.707105 TGCAATGATGAACTCGGTGATAT 58.293 39.130 0.00 0.00 0.00 1.63
253 254 5.852827 TGCAATGATGAACTCGGTGATATA 58.147 37.500 0.00 0.00 0.00 0.86
254 255 6.466812 TGCAATGATGAACTCGGTGATATAT 58.533 36.000 0.00 0.00 0.00 0.86
255 256 7.610865 TGCAATGATGAACTCGGTGATATATA 58.389 34.615 0.00 0.00 0.00 0.86
256 257 8.260114 TGCAATGATGAACTCGGTGATATATAT 58.740 33.333 0.00 0.00 0.00 0.86
257 258 9.102757 GCAATGATGAACTCGGTGATATATATT 57.897 33.333 0.00 0.00 0.00 1.28
367 368 7.981102 AATTAAAACAGAGTGAGTCCTTACC 57.019 36.000 0.00 0.00 0.00 2.85
368 369 6.488769 TTAAAACAGAGTGAGTCCTTACCA 57.511 37.500 0.00 0.00 0.00 3.25
369 370 5.367945 AAAACAGAGTGAGTCCTTACCAA 57.632 39.130 0.00 0.00 0.00 3.67
370 371 5.367945 AAACAGAGTGAGTCCTTACCAAA 57.632 39.130 0.00 0.00 0.00 3.28
371 372 4.608948 ACAGAGTGAGTCCTTACCAAAG 57.391 45.455 0.00 0.00 0.00 2.77
372 373 3.967987 ACAGAGTGAGTCCTTACCAAAGT 59.032 43.478 0.00 0.00 0.00 2.66
373 374 5.145564 ACAGAGTGAGTCCTTACCAAAGTA 58.854 41.667 0.00 0.00 0.00 2.24
374 375 5.601313 ACAGAGTGAGTCCTTACCAAAGTAA 59.399 40.000 0.00 0.00 36.97 2.24
375 376 5.927115 CAGAGTGAGTCCTTACCAAAGTAAC 59.073 44.000 0.00 0.00 34.70 2.50
376 377 5.839606 AGAGTGAGTCCTTACCAAAGTAACT 59.160 40.000 0.00 0.00 34.70 2.24
377 378 7.008941 AGAGTGAGTCCTTACCAAAGTAACTA 58.991 38.462 0.00 0.00 34.70 2.24
378 379 7.508296 AGAGTGAGTCCTTACCAAAGTAACTAA 59.492 37.037 0.00 0.00 34.70 2.24
379 380 7.440198 AGTGAGTCCTTACCAAAGTAACTAAC 58.560 38.462 0.00 0.00 34.70 2.34
380 381 7.289549 AGTGAGTCCTTACCAAAGTAACTAACT 59.710 37.037 0.00 0.00 41.49 2.24
381 382 8.579863 GTGAGTCCTTACCAAAGTAACTAACTA 58.420 37.037 0.00 0.00 37.50 2.24
382 383 8.579863 TGAGTCCTTACCAAAGTAACTAACTAC 58.420 37.037 0.00 0.00 37.50 2.73
383 384 8.718158 AGTCCTTACCAAAGTAACTAACTACT 57.282 34.615 0.00 0.00 37.50 2.57
384 385 8.801299 AGTCCTTACCAAAGTAACTAACTACTC 58.199 37.037 0.00 0.00 37.50 2.59
385 386 8.031864 GTCCTTACCAAAGTAACTAACTACTCC 58.968 40.741 0.00 0.00 37.50 3.85
386 387 7.179160 TCCTTACCAAAGTAACTAACTACTCCC 59.821 40.741 0.00 0.00 37.50 4.30
387 388 7.179872 CCTTACCAAAGTAACTAACTACTCCCT 59.820 40.741 0.00 0.00 37.50 4.20
388 389 6.602410 ACCAAAGTAACTAACTACTCCCTC 57.398 41.667 0.00 0.00 37.50 4.30
389 390 5.483231 ACCAAAGTAACTAACTACTCCCTCC 59.517 44.000 0.00 0.00 37.50 4.30
390 391 5.393896 CCAAAGTAACTAACTACTCCCTCCG 60.394 48.000 0.00 0.00 37.50 4.63
391 392 4.582973 AGTAACTAACTACTCCCTCCGT 57.417 45.455 0.00 0.00 36.36 4.69
392 393 4.928263 AGTAACTAACTACTCCCTCCGTT 58.072 43.478 0.00 0.00 36.36 4.44
393 394 5.328565 AGTAACTAACTACTCCCTCCGTTT 58.671 41.667 0.00 0.00 36.36 3.60
394 395 4.797800 AACTAACTACTCCCTCCGTTTC 57.202 45.455 0.00 0.00 0.00 2.78
395 396 4.044946 ACTAACTACTCCCTCCGTTTCT 57.955 45.455 0.00 0.00 0.00 2.52
396 397 5.184892 ACTAACTACTCCCTCCGTTTCTA 57.815 43.478 0.00 0.00 0.00 2.10
397 398 5.574188 ACTAACTACTCCCTCCGTTTCTAA 58.426 41.667 0.00 0.00 0.00 2.10
398 399 6.012745 ACTAACTACTCCCTCCGTTTCTAAA 58.987 40.000 0.00 0.00 0.00 1.85
399 400 6.666980 ACTAACTACTCCCTCCGTTTCTAAAT 59.333 38.462 0.00 0.00 0.00 1.40
400 401 7.836183 ACTAACTACTCCCTCCGTTTCTAAATA 59.164 37.037 0.00 0.00 0.00 1.40
401 402 7.672122 AACTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
402 403 7.672122 ACTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
403 404 8.087303 ACTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
404 405 9.205513 ACTACTCCCTCCGTTTCTAAATATTTA 57.794 33.333 7.66 7.66 0.00 1.40
407 408 8.935741 ACTCCCTCCGTTTCTAAATATTTATCT 58.064 33.333 8.34 0.00 0.00 1.98
408 409 9.780186 CTCCCTCCGTTTCTAAATATTTATCTT 57.220 33.333 8.34 0.00 0.00 2.40
439 440 9.855361 GAGATTTCAAATGAACTATCACATACG 57.145 33.333 9.37 0.00 38.69 3.06
440 441 8.830580 AGATTTCAAATGAACTATCACATACGG 58.169 33.333 9.37 0.00 38.69 4.02
441 442 8.731275 ATTTCAAATGAACTATCACATACGGA 57.269 30.769 0.00 0.00 38.69 4.69
442 443 8.731275 TTTCAAATGAACTATCACATACGGAT 57.269 30.769 0.00 0.00 38.69 4.18
443 444 7.713764 TCAAATGAACTATCACATACGGATG 57.286 36.000 5.94 5.94 38.69 3.51
445 446 8.417884 TCAAATGAACTATCACATACGGATGTA 58.582 33.333 14.23 2.61 44.82 2.29
446 447 9.208022 CAAATGAACTATCACATACGGATGTAT 57.792 33.333 14.23 10.02 44.82 2.29
484 485 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
485 486 8.485976 AGAGTGTAGATTCACTTATTTTGCTC 57.514 34.615 0.98 0.00 46.81 4.26
486 487 8.317679 AGAGTGTAGATTCACTTATTTTGCTCT 58.682 33.333 0.98 0.00 46.81 4.09
487 488 8.261492 AGTGTAGATTCACTTATTTTGCTCTG 57.739 34.615 0.00 0.00 44.92 3.35
488 489 7.880195 AGTGTAGATTCACTTATTTTGCTCTGT 59.120 33.333 0.00 0.00 44.92 3.41
489 490 9.151471 GTGTAGATTCACTTATTTTGCTCTGTA 57.849 33.333 0.00 0.00 35.68 2.74
490 491 9.890629 TGTAGATTCACTTATTTTGCTCTGTAT 57.109 29.630 0.00 0.00 0.00 2.29
492 493 8.798859 AGATTCACTTATTTTGCTCTGTATGT 57.201 30.769 0.00 0.00 0.00 2.29
493 494 9.890629 AGATTCACTTATTTTGCTCTGTATGTA 57.109 29.630 0.00 0.00 0.00 2.29
495 496 9.672673 ATTCACTTATTTTGCTCTGTATGTAGT 57.327 29.630 0.00 0.00 0.00 2.73
496 497 8.703604 TCACTTATTTTGCTCTGTATGTAGTC 57.296 34.615 0.00 0.00 0.00 2.59
497 498 8.311109 TCACTTATTTTGCTCTGTATGTAGTCA 58.689 33.333 0.00 0.00 0.00 3.41
498 499 8.383619 CACTTATTTTGCTCTGTATGTAGTCAC 58.616 37.037 0.00 0.00 0.00 3.67
499 500 8.314751 ACTTATTTTGCTCTGTATGTAGTCACT 58.685 33.333 0.00 0.00 0.00 3.41
500 501 9.155975 CTTATTTTGCTCTGTATGTAGTCACTT 57.844 33.333 0.00 0.00 0.00 3.16
501 502 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
502 503 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
503 504 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
504 505 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
505 506 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
506 507 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
507 508 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
508 509 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
509 510 8.902540 TCTGTATGTAGTCACTTGTTGAAATT 57.097 30.769 0.00 0.00 35.39 1.82
510 511 9.337396 TCTGTATGTAGTCACTTGTTGAAATTT 57.663 29.630 0.00 0.00 35.39 1.82
511 512 9.950680 CTGTATGTAGTCACTTGTTGAAATTTT 57.049 29.630 0.00 0.00 35.39 1.82
549 550 9.941325 ATATTTAGGAATGCAGAGAGTAGATTG 57.059 33.333 0.00 0.00 0.00 2.67
550 551 4.070630 AGGAATGCAGAGAGTAGATTGC 57.929 45.455 0.00 0.00 37.09 3.56
556 557 4.941657 TGCAGAGAGTAGATTGCATAGTG 58.058 43.478 0.00 0.00 41.23 2.74
557 558 4.202192 TGCAGAGAGTAGATTGCATAGTGG 60.202 45.833 0.00 0.00 41.23 4.00
558 559 4.305769 CAGAGAGTAGATTGCATAGTGGC 58.694 47.826 0.00 0.00 0.00 5.01
559 560 3.005261 AGAGAGTAGATTGCATAGTGGCG 59.995 47.826 0.00 0.00 36.28 5.69
560 561 1.795286 GAGTAGATTGCATAGTGGCGC 59.205 52.381 0.00 0.00 36.28 6.53
561 562 0.868406 GTAGATTGCATAGTGGCGCC 59.132 55.000 22.73 22.73 36.28 6.53
562 563 0.467804 TAGATTGCATAGTGGCGCCA 59.532 50.000 29.03 29.03 36.28 5.69
563 564 0.394216 AGATTGCATAGTGGCGCCAA 60.394 50.000 34.66 18.73 36.28 4.52
564 565 0.455410 GATTGCATAGTGGCGCCAAA 59.545 50.000 34.66 23.48 36.28 3.28
565 566 0.173255 ATTGCATAGTGGCGCCAAAC 59.827 50.000 34.66 20.89 36.28 2.93
566 567 1.175347 TTGCATAGTGGCGCCAAACA 61.175 50.000 34.66 21.38 36.28 2.83
567 568 1.175347 TGCATAGTGGCGCCAAACAA 61.175 50.000 34.66 17.34 36.28 2.83
568 569 0.038709 GCATAGTGGCGCCAAACAAA 60.039 50.000 34.66 15.34 0.00 2.83
569 570 1.981254 CATAGTGGCGCCAAACAAAG 58.019 50.000 34.66 15.48 0.00 2.77
570 571 0.243636 ATAGTGGCGCCAAACAAAGC 59.756 50.000 34.66 17.47 0.00 3.51
571 572 1.103987 TAGTGGCGCCAAACAAAGCA 61.104 50.000 34.66 0.58 0.00 3.91
572 573 1.300853 GTGGCGCCAAACAAAGCAT 60.301 52.632 34.66 0.00 0.00 3.79
573 574 0.038709 GTGGCGCCAAACAAAGCATA 60.039 50.000 34.66 0.00 0.00 3.14
574 575 0.243365 TGGCGCCAAACAAAGCATAG 59.757 50.000 30.74 0.00 0.00 2.23
575 576 1.078201 GGCGCCAAACAAAGCATAGC 61.078 55.000 24.80 0.00 0.00 2.97
576 577 0.388391 GCGCCAAACAAAGCATAGCA 60.388 50.000 0.00 0.00 0.00 3.49
577 578 1.736696 GCGCCAAACAAAGCATAGCAT 60.737 47.619 0.00 0.00 0.00 3.79
578 579 2.479389 GCGCCAAACAAAGCATAGCATA 60.479 45.455 0.00 0.00 0.00 3.14
579 580 3.365832 CGCCAAACAAAGCATAGCATAG 58.634 45.455 0.00 0.00 0.00 2.23
580 581 3.181497 CGCCAAACAAAGCATAGCATAGT 60.181 43.478 0.00 0.00 0.00 2.12
581 582 4.035091 CGCCAAACAAAGCATAGCATAGTA 59.965 41.667 0.00 0.00 0.00 1.82
582 583 5.514279 GCCAAACAAAGCATAGCATAGTAG 58.486 41.667 0.00 0.00 0.00 2.57
583 584 5.514279 CCAAACAAAGCATAGCATAGTAGC 58.486 41.667 0.00 0.00 0.00 3.58
584 585 5.066375 CCAAACAAAGCATAGCATAGTAGCA 59.934 40.000 0.00 0.00 36.85 3.49
585 586 6.238842 CCAAACAAAGCATAGCATAGTAGCAT 60.239 38.462 0.00 0.00 36.85 3.79
586 587 6.551385 AACAAAGCATAGCATAGTAGCATC 57.449 37.500 0.00 0.00 36.85 3.91
587 588 4.687948 ACAAAGCATAGCATAGTAGCATCG 59.312 41.667 0.00 0.00 36.85 3.84
588 589 4.790765 AAGCATAGCATAGTAGCATCGA 57.209 40.909 0.00 0.00 36.85 3.59
589 590 4.790765 AGCATAGCATAGTAGCATCGAA 57.209 40.909 0.00 0.00 36.85 3.71
590 591 4.489810 AGCATAGCATAGTAGCATCGAAC 58.510 43.478 0.00 0.00 36.85 3.95
591 592 4.021981 AGCATAGCATAGTAGCATCGAACA 60.022 41.667 0.00 0.00 36.85 3.18
592 593 4.867047 GCATAGCATAGTAGCATCGAACAT 59.133 41.667 0.00 0.00 36.85 2.71
593 594 6.036470 GCATAGCATAGTAGCATCGAACATA 58.964 40.000 0.00 0.00 36.85 2.29
594 595 6.198029 GCATAGCATAGTAGCATCGAACATAG 59.802 42.308 0.00 0.00 36.85 2.23
595 596 4.489810 AGCATAGTAGCATCGAACATAGC 58.510 43.478 0.00 0.00 36.85 2.97
596 597 4.021981 AGCATAGTAGCATCGAACATAGCA 60.022 41.667 0.00 0.00 36.85 3.49
597 598 4.867047 GCATAGTAGCATCGAACATAGCAT 59.133 41.667 0.00 0.00 0.00 3.79
598 599 6.036470 GCATAGTAGCATCGAACATAGCATA 58.964 40.000 0.00 0.00 0.00 3.14
599 600 6.198029 GCATAGTAGCATCGAACATAGCATAG 59.802 42.308 0.00 0.00 0.00 2.23
600 601 5.966742 AGTAGCATCGAACATAGCATAGA 57.033 39.130 0.00 0.00 0.00 1.98
601 602 5.948588 AGTAGCATCGAACATAGCATAGAG 58.051 41.667 0.00 0.00 0.00 2.43
602 603 4.862902 AGCATCGAACATAGCATAGAGT 57.137 40.909 0.00 0.00 0.00 3.24
603 604 5.207110 AGCATCGAACATAGCATAGAGTT 57.793 39.130 0.00 0.00 0.00 3.01
604 605 5.605534 AGCATCGAACATAGCATAGAGTTT 58.394 37.500 0.00 0.00 0.00 2.66
605 606 6.051717 AGCATCGAACATAGCATAGAGTTTT 58.948 36.000 0.00 0.00 0.00 2.43
606 607 6.201806 AGCATCGAACATAGCATAGAGTTTTC 59.798 38.462 0.00 0.00 0.00 2.29
607 608 6.576021 CATCGAACATAGCATAGAGTTTTCG 58.424 40.000 0.00 0.00 0.00 3.46
608 609 5.041287 TCGAACATAGCATAGAGTTTTCGG 58.959 41.667 0.00 0.00 0.00 4.30
609 610 5.041287 CGAACATAGCATAGAGTTTTCGGA 58.959 41.667 0.00 0.00 0.00 4.55
610 611 5.518847 CGAACATAGCATAGAGTTTTCGGAA 59.481 40.000 0.00 0.00 0.00 4.30
611 612 6.035650 CGAACATAGCATAGAGTTTTCGGAAA 59.964 38.462 0.00 0.00 0.00 3.13
612 613 7.412563 CGAACATAGCATAGAGTTTTCGGAAAA 60.413 37.037 11.68 11.68 0.00 2.29
613 614 7.308782 ACATAGCATAGAGTTTTCGGAAAAG 57.691 36.000 15.75 5.06 0.00 2.27
614 615 6.316390 ACATAGCATAGAGTTTTCGGAAAAGG 59.684 38.462 15.75 0.00 0.00 3.11
615 616 4.010349 AGCATAGAGTTTTCGGAAAAGGG 58.990 43.478 15.75 4.33 0.00 3.95
616 617 4.007659 GCATAGAGTTTTCGGAAAAGGGA 58.992 43.478 15.75 3.36 0.00 4.20
617 618 4.457949 GCATAGAGTTTTCGGAAAAGGGAA 59.542 41.667 15.75 3.90 0.00 3.97
618 619 5.125578 GCATAGAGTTTTCGGAAAAGGGAAT 59.874 40.000 15.75 5.86 0.00 3.01
619 620 6.678164 GCATAGAGTTTTCGGAAAAGGGAATC 60.678 42.308 15.75 4.44 0.00 2.52
620 621 4.986783 AGAGTTTTCGGAAAAGGGAATCT 58.013 39.130 15.75 8.51 0.00 2.40
621 622 5.386060 AGAGTTTTCGGAAAAGGGAATCTT 58.614 37.500 15.75 0.00 37.28 2.40
622 623 5.473846 AGAGTTTTCGGAAAAGGGAATCTTC 59.526 40.000 15.75 1.99 33.94 2.87
623 624 5.137551 AGTTTTCGGAAAAGGGAATCTTCA 58.862 37.500 15.75 0.00 33.94 3.02
624 625 5.775195 AGTTTTCGGAAAAGGGAATCTTCAT 59.225 36.000 15.75 0.00 33.94 2.57
625 626 6.946009 AGTTTTCGGAAAAGGGAATCTTCATA 59.054 34.615 15.75 0.00 33.94 2.15
626 627 7.450323 AGTTTTCGGAAAAGGGAATCTTCATAA 59.550 33.333 15.75 0.00 33.94 1.90
627 628 7.768807 TTTCGGAAAAGGGAATCTTCATAAA 57.231 32.000 0.00 0.00 33.94 1.40
628 629 7.768807 TTCGGAAAAGGGAATCTTCATAAAA 57.231 32.000 0.00 0.00 33.94 1.52
629 630 7.768807 TCGGAAAAGGGAATCTTCATAAAAA 57.231 32.000 0.00 0.00 33.94 1.94
630 631 8.361169 TCGGAAAAGGGAATCTTCATAAAAAT 57.639 30.769 0.00 0.00 33.94 1.82
631 632 8.466798 TCGGAAAAGGGAATCTTCATAAAAATC 58.533 33.333 0.00 0.00 33.94 2.17
632 633 7.432252 CGGAAAAGGGAATCTTCATAAAAATCG 59.568 37.037 0.00 0.00 33.94 3.34
633 634 7.706607 GGAAAAGGGAATCTTCATAAAAATCGG 59.293 37.037 0.00 0.00 33.94 4.18
634 635 7.718334 AAAGGGAATCTTCATAAAAATCGGT 57.282 32.000 0.00 0.00 33.94 4.69
635 636 8.817092 AAAGGGAATCTTCATAAAAATCGGTA 57.183 30.769 0.00 0.00 33.94 4.02
636 637 8.996651 AAGGGAATCTTCATAAAAATCGGTAT 57.003 30.769 0.00 0.00 0.00 2.73
638 639 9.503399 AGGGAATCTTCATAAAAATCGGTATAC 57.497 33.333 0.00 0.00 0.00 1.47
639 640 8.727910 GGGAATCTTCATAAAAATCGGTATACC 58.272 37.037 12.27 12.27 0.00 2.73
653 654 4.676849 GGTATACCGAGAGACGATAACC 57.323 50.000 6.06 0.00 45.77 2.85
654 655 4.067896 GGTATACCGAGAGACGATAACCA 58.932 47.826 6.06 0.00 45.77 3.67
655 656 4.516698 GGTATACCGAGAGACGATAACCAA 59.483 45.833 6.06 0.00 45.77 3.67
656 657 5.009010 GGTATACCGAGAGACGATAACCAAA 59.991 44.000 6.06 0.00 45.77 3.28
657 658 3.947910 ACCGAGAGACGATAACCAAAA 57.052 42.857 0.00 0.00 45.77 2.44
658 659 3.582780 ACCGAGAGACGATAACCAAAAC 58.417 45.455 0.00 0.00 45.77 2.43
659 660 2.928116 CCGAGAGACGATAACCAAAACC 59.072 50.000 0.00 0.00 45.77 3.27
660 661 2.928116 CGAGAGACGATAACCAAAACCC 59.072 50.000 0.00 0.00 45.77 4.11
661 662 3.615592 CGAGAGACGATAACCAAAACCCA 60.616 47.826 0.00 0.00 45.77 4.51
662 663 3.933332 GAGAGACGATAACCAAAACCCAG 59.067 47.826 0.00 0.00 0.00 4.45
663 664 2.418976 GAGACGATAACCAAAACCCAGC 59.581 50.000 0.00 0.00 0.00 4.85
664 665 1.471287 GACGATAACCAAAACCCAGCC 59.529 52.381 0.00 0.00 0.00 4.85
665 666 1.074889 ACGATAACCAAAACCCAGCCT 59.925 47.619 0.00 0.00 0.00 4.58
666 667 2.167662 CGATAACCAAAACCCAGCCTT 58.832 47.619 0.00 0.00 0.00 4.35
667 668 2.560981 CGATAACCAAAACCCAGCCTTT 59.439 45.455 0.00 0.00 0.00 3.11
668 669 3.613910 CGATAACCAAAACCCAGCCTTTG 60.614 47.826 0.00 0.00 33.25 2.77
669 670 1.872773 AACCAAAACCCAGCCTTTGA 58.127 45.000 0.00 0.00 35.03 2.69
670 671 2.101640 ACCAAAACCCAGCCTTTGAT 57.898 45.000 0.00 0.00 35.03 2.57
671 672 1.693606 ACCAAAACCCAGCCTTTGATG 59.306 47.619 0.00 0.00 35.03 3.07
678 679 2.490165 CAGCCTTTGATGGAGCAGG 58.510 57.895 0.00 0.00 0.00 4.85
679 680 0.323178 CAGCCTTTGATGGAGCAGGT 60.323 55.000 0.00 0.00 0.00 4.00
680 681 0.034670 AGCCTTTGATGGAGCAGGTC 60.035 55.000 0.00 0.00 0.00 3.85
733 740 6.830114 AGCAACGCTATAGTTCACTATTTC 57.170 37.500 4.80 0.00 39.66 2.17
773 782 3.946695 TGCCACGTGCTTGTGTAACATC 61.947 50.000 10.91 0.00 42.74 3.06
838 847 1.939934 TGTTCAACTTCCGCTCACAAG 59.060 47.619 0.00 0.00 0.00 3.16
893 902 3.901797 AAAAGGCAGACTCCCGGCG 62.902 63.158 0.00 0.00 36.81 6.46
911 920 0.741915 CGTCCTCTCCTCCTACAAGC 59.258 60.000 0.00 0.00 0.00 4.01
927 936 3.619054 GCTTAAGAGCTAGCCGCG 58.381 61.111 12.13 0.00 45.65 6.46
1037 1051 2.159254 CCTACTCAGAGAAGAGCAGCAC 60.159 54.545 3.79 0.00 39.26 4.40
1041 1055 0.034476 CAGAGAAGAGCAGCACCACA 59.966 55.000 0.00 0.00 0.00 4.17
1143 1157 4.357279 AGCTGGCCTCCTTGCACC 62.357 66.667 3.32 0.00 0.00 5.01
1146 1160 4.641645 TGGCCTCCTTGCACCACG 62.642 66.667 3.32 0.00 0.00 4.94
1391 1405 4.991056 GTGCAGATCAATCGGCTTATTCTA 59.009 41.667 14.64 0.00 46.09 2.10
1416 1430 1.451927 GCCTGGTGATCATTGCCGA 60.452 57.895 0.00 0.00 0.00 5.54
1471 1485 4.755123 AGTACGGTCACATTCTTCCTTTTG 59.245 41.667 0.00 0.00 0.00 2.44
1473 1487 3.564225 ACGGTCACATTCTTCCTTTTGTC 59.436 43.478 0.00 0.00 0.00 3.18
1500 1514 0.653636 GCGTCGTGTTTTTCCTCACA 59.346 50.000 0.00 0.00 34.66 3.58
1532 1547 2.795329 ACATAAGTGGAAGGTTGCAGG 58.205 47.619 0.00 0.00 0.00 4.85
1544 1559 2.040412 AGGTTGCAGGAAAGAAGGGTAG 59.960 50.000 0.00 0.00 0.00 3.18
1643 1730 4.923871 ACTATAAACTTGCTCTCGTGTGTG 59.076 41.667 0.00 0.00 0.00 3.82
1644 1731 2.024176 AAACTTGCTCTCGTGTGTGT 57.976 45.000 0.00 0.00 0.00 3.72
1645 1732 1.290203 AACTTGCTCTCGTGTGTGTG 58.710 50.000 0.00 0.00 0.00 3.82
1646 1733 0.175760 ACTTGCTCTCGTGTGTGTGT 59.824 50.000 0.00 0.00 0.00 3.72
1662 1749 3.005554 GTGTGTCTGGGATGTTCATCTG 58.994 50.000 11.73 4.45 0.00 2.90
1756 1846 1.040646 TGGTAGGCTAAGAGCATCCG 58.959 55.000 0.00 0.00 44.75 4.18
1878 1972 8.100164 TCCATCTTCAATCATAACAGTACAACA 58.900 33.333 0.00 0.00 0.00 3.33
1952 2469 1.875514 CTACAAGCACTGAAGCAAGCA 59.124 47.619 0.00 0.00 36.85 3.91
2039 3777 6.704493 ACAGTCAAAAAGTTATCGTGCTAAGA 59.296 34.615 0.00 0.00 0.00 2.10
2042 3780 6.147328 GTCAAAAAGTTATCGTGCTAAGACCT 59.853 38.462 0.00 0.00 0.00 3.85
2046 3784 6.710597 AAGTTATCGTGCTAAGACCTCATA 57.289 37.500 0.00 0.00 0.00 2.15
2055 3793 6.461092 CGTGCTAAGACCTCATAGAACCAATA 60.461 42.308 0.00 0.00 0.00 1.90
2056 3794 6.702282 GTGCTAAGACCTCATAGAACCAATAC 59.298 42.308 0.00 0.00 0.00 1.89
2059 3797 6.875972 AAGACCTCATAGAACCAATACACT 57.124 37.500 0.00 0.00 0.00 3.55
2066 3804 8.258007 CCTCATAGAACCAATACACTAGAACAA 58.742 37.037 0.00 0.00 0.00 2.83
2159 3897 1.290955 CGGGAGCAACTAACCACGA 59.709 57.895 0.00 0.00 0.00 4.35
2188 3926 4.976540 AGGCCACTCCTAATGGTTATAC 57.023 45.455 5.01 0.00 45.41 1.47
2303 4042 1.702182 ACACAATGAACACATGGCCA 58.298 45.000 8.56 8.56 0.00 5.36
2341 4081 9.900710 GTAGAATGTACATATCTAACACTGAGG 57.099 37.037 20.08 0.00 0.00 3.86
2343 4083 9.373450 AGAATGTACATATCTAACACTGAGGAT 57.627 33.333 9.21 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.000145 GTTTTCTTAGCCTCTCGCCG 59.000 55.000 0.00 0.00 38.78 6.46
1 2 1.370609 GGTTTTCTTAGCCTCTCGCC 58.629 55.000 0.00 0.00 38.78 5.54
2 3 1.066071 AGGGTTTTCTTAGCCTCTCGC 60.066 52.381 0.00 0.00 42.16 5.03
3 4 3.738590 GCTAGGGTTTTCTTAGCCTCTCG 60.739 52.174 0.00 0.00 44.57 4.04
4 5 3.738590 CGCTAGGGTTTTCTTAGCCTCTC 60.739 52.174 0.00 0.00 44.57 3.20
5 6 2.168728 CGCTAGGGTTTTCTTAGCCTCT 59.831 50.000 0.00 0.00 44.57 3.69
6 7 2.167900 TCGCTAGGGTTTTCTTAGCCTC 59.832 50.000 6.70 0.00 44.57 4.70
8 9 2.167900 TCTCGCTAGGGTTTTCTTAGCC 59.832 50.000 6.70 0.00 35.91 3.93
9 10 3.119065 ACTCTCGCTAGGGTTTTCTTAGC 60.119 47.826 6.70 0.00 29.55 3.09
10 11 4.674475 GACTCTCGCTAGGGTTTTCTTAG 58.326 47.826 6.70 0.00 36.20 2.18
11 12 3.128242 CGACTCTCGCTAGGGTTTTCTTA 59.872 47.826 6.70 0.00 36.20 2.10
12 13 2.094649 CGACTCTCGCTAGGGTTTTCTT 60.095 50.000 6.70 0.00 36.20 2.52
13 14 1.473278 CGACTCTCGCTAGGGTTTTCT 59.527 52.381 6.70 0.00 36.20 2.52
14 15 1.910688 CGACTCTCGCTAGGGTTTTC 58.089 55.000 6.70 0.00 36.20 2.29
25 26 0.108615 AAAGACCCATGCGACTCTCG 60.109 55.000 0.00 0.00 43.89 4.04
26 27 1.363744 CAAAGACCCATGCGACTCTC 58.636 55.000 0.00 0.00 0.00 3.20
27 28 0.674895 GCAAAGACCCATGCGACTCT 60.675 55.000 0.00 0.00 32.17 3.24
28 29 1.648467 GGCAAAGACCCATGCGACTC 61.648 60.000 0.00 0.00 43.47 3.36
29 30 1.675641 GGCAAAGACCCATGCGACT 60.676 57.895 0.00 0.00 43.47 4.18
30 31 1.648467 GAGGCAAAGACCCATGCGAC 61.648 60.000 0.00 0.00 43.47 5.19
31 32 1.377202 GAGGCAAAGACCCATGCGA 60.377 57.895 0.00 0.00 43.47 5.10
32 33 1.372087 GAGAGGCAAAGACCCATGCG 61.372 60.000 0.00 0.00 43.47 4.73
33 34 1.372087 CGAGAGGCAAAGACCCATGC 61.372 60.000 0.00 0.00 41.82 4.06
34 35 1.372087 GCGAGAGGCAAAGACCCATG 61.372 60.000 0.00 0.00 42.87 3.66
35 36 1.078143 GCGAGAGGCAAAGACCCAT 60.078 57.895 0.00 0.00 42.87 4.00
36 37 2.347490 GCGAGAGGCAAAGACCCA 59.653 61.111 0.00 0.00 42.87 4.51
49 50 4.386049 ACTTATGTTTTTCTCTCGTGCGAG 59.614 41.667 14.69 14.69 43.21 5.03
50 51 4.304110 ACTTATGTTTTTCTCTCGTGCGA 58.696 39.130 0.00 0.00 0.00 5.10
51 52 4.647291 ACTTATGTTTTTCTCTCGTGCG 57.353 40.909 0.00 0.00 0.00 5.34
52 53 6.707599 AGTACTTATGTTTTTCTCTCGTGC 57.292 37.500 0.00 0.00 0.00 5.34
69 70 9.113838 CAGCTCAATTTGGATGTTATAGTACTT 57.886 33.333 0.00 0.00 0.00 2.24
70 71 8.486210 TCAGCTCAATTTGGATGTTATAGTACT 58.514 33.333 0.00 0.00 0.00 2.73
71 72 8.662781 TCAGCTCAATTTGGATGTTATAGTAC 57.337 34.615 0.00 0.00 0.00 2.73
72 73 9.679661 TTTCAGCTCAATTTGGATGTTATAGTA 57.320 29.630 0.00 0.00 0.00 1.82
73 74 8.579850 TTTCAGCTCAATTTGGATGTTATAGT 57.420 30.769 0.00 0.00 0.00 2.12
77 78 9.023962 ACTAATTTCAGCTCAATTTGGATGTTA 57.976 29.630 5.85 0.00 0.00 2.41
78 79 7.816031 CACTAATTTCAGCTCAATTTGGATGTT 59.184 33.333 5.85 0.00 0.00 2.71
79 80 7.318141 CACTAATTTCAGCTCAATTTGGATGT 58.682 34.615 5.85 0.00 0.00 3.06
80 81 6.255020 GCACTAATTTCAGCTCAATTTGGATG 59.745 38.462 5.85 0.00 0.00 3.51
81 82 6.154021 AGCACTAATTTCAGCTCAATTTGGAT 59.846 34.615 5.85 0.00 30.05 3.41
82 83 5.477984 AGCACTAATTTCAGCTCAATTTGGA 59.522 36.000 5.85 0.00 30.05 3.53
83 84 5.717119 AGCACTAATTTCAGCTCAATTTGG 58.283 37.500 5.85 0.00 30.05 3.28
84 85 6.309737 GGAAGCACTAATTTCAGCTCAATTTG 59.690 38.462 5.85 6.72 36.07 2.32
85 86 6.210185 AGGAAGCACTAATTTCAGCTCAATTT 59.790 34.615 5.85 0.00 36.07 1.82
86 87 5.713861 AGGAAGCACTAATTTCAGCTCAATT 59.286 36.000 5.84 5.84 36.07 2.32
87 88 5.259632 AGGAAGCACTAATTTCAGCTCAAT 58.740 37.500 0.00 0.00 36.07 2.57
88 89 4.655963 AGGAAGCACTAATTTCAGCTCAA 58.344 39.130 0.00 0.00 36.07 3.02
89 90 4.292186 AGGAAGCACTAATTTCAGCTCA 57.708 40.909 0.00 0.00 36.07 4.26
90 91 4.940654 AGAAGGAAGCACTAATTTCAGCTC 59.059 41.667 0.00 0.00 36.07 4.09
91 92 4.916183 AGAAGGAAGCACTAATTTCAGCT 58.084 39.130 0.00 0.00 39.37 4.24
92 93 5.635417 AAGAAGGAAGCACTAATTTCAGC 57.365 39.130 0.00 0.00 0.00 4.26
100 101 9.227777 GGAGTAAATAAAAAGAAGGAAGCACTA 57.772 33.333 0.00 0.00 0.00 2.74
101 102 7.724061 TGGAGTAAATAAAAAGAAGGAAGCACT 59.276 33.333 0.00 0.00 0.00 4.40
102 103 7.808381 GTGGAGTAAATAAAAAGAAGGAAGCAC 59.192 37.037 0.00 0.00 0.00 4.40
103 104 7.504238 TGTGGAGTAAATAAAAAGAAGGAAGCA 59.496 33.333 0.00 0.00 0.00 3.91
104 105 7.882179 TGTGGAGTAAATAAAAAGAAGGAAGC 58.118 34.615 0.00 0.00 0.00 3.86
118 119 9.113838 CAGTCAAAGCTAATATGTGGAGTAAAT 57.886 33.333 0.00 0.00 0.00 1.40
119 120 8.318412 TCAGTCAAAGCTAATATGTGGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
120 121 7.847096 TCAGTCAAAGCTAATATGTGGAGTAA 58.153 34.615 0.00 0.00 0.00 2.24
121 122 7.418337 TCAGTCAAAGCTAATATGTGGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
122 123 6.299805 TCAGTCAAAGCTAATATGTGGAGT 57.700 37.500 0.00 0.00 0.00 3.85
123 124 6.820656 ACTTCAGTCAAAGCTAATATGTGGAG 59.179 38.462 0.00 0.00 0.00 3.86
124 125 6.711277 ACTTCAGTCAAAGCTAATATGTGGA 58.289 36.000 0.00 0.00 0.00 4.02
125 126 6.992063 ACTTCAGTCAAAGCTAATATGTGG 57.008 37.500 0.00 0.00 0.00 4.17
218 219 9.955208 GAGTTCATCATTGCATATATTTTCACA 57.045 29.630 0.00 0.00 0.00 3.58
219 220 9.110617 CGAGTTCATCATTGCATATATTTTCAC 57.889 33.333 0.00 0.00 0.00 3.18
220 221 8.291740 CCGAGTTCATCATTGCATATATTTTCA 58.708 33.333 0.00 0.00 0.00 2.69
221 222 8.292448 ACCGAGTTCATCATTGCATATATTTTC 58.708 33.333 0.00 0.00 0.00 2.29
222 223 8.077991 CACCGAGTTCATCATTGCATATATTTT 58.922 33.333 0.00 0.00 0.00 1.82
223 224 7.445096 TCACCGAGTTCATCATTGCATATATTT 59.555 33.333 0.00 0.00 0.00 1.40
224 225 6.936335 TCACCGAGTTCATCATTGCATATATT 59.064 34.615 0.00 0.00 0.00 1.28
225 226 6.466812 TCACCGAGTTCATCATTGCATATAT 58.533 36.000 0.00 0.00 0.00 0.86
226 227 5.852827 TCACCGAGTTCATCATTGCATATA 58.147 37.500 0.00 0.00 0.00 0.86
227 228 4.707105 TCACCGAGTTCATCATTGCATAT 58.293 39.130 0.00 0.00 0.00 1.78
228 229 4.135747 TCACCGAGTTCATCATTGCATA 57.864 40.909 0.00 0.00 0.00 3.14
229 230 2.989909 TCACCGAGTTCATCATTGCAT 58.010 42.857 0.00 0.00 0.00 3.96
230 231 2.470983 TCACCGAGTTCATCATTGCA 57.529 45.000 0.00 0.00 0.00 4.08
231 232 6.974932 ATATATCACCGAGTTCATCATTGC 57.025 37.500 0.00 0.00 0.00 3.56
341 342 9.498176 GGTAAGGACTCACTCTGTTTTAATTTA 57.502 33.333 0.00 0.00 0.00 1.40
342 343 7.996644 TGGTAAGGACTCACTCTGTTTTAATTT 59.003 33.333 0.00 0.00 0.00 1.82
343 344 7.514721 TGGTAAGGACTCACTCTGTTTTAATT 58.485 34.615 0.00 0.00 0.00 1.40
344 345 7.074653 TGGTAAGGACTCACTCTGTTTTAAT 57.925 36.000 0.00 0.00 0.00 1.40
345 346 6.488769 TGGTAAGGACTCACTCTGTTTTAA 57.511 37.500 0.00 0.00 0.00 1.52
346 347 6.488769 TTGGTAAGGACTCACTCTGTTTTA 57.511 37.500 0.00 0.00 0.00 1.52
347 348 5.367945 TTGGTAAGGACTCACTCTGTTTT 57.632 39.130 0.00 0.00 0.00 2.43
348 349 5.104485 ACTTTGGTAAGGACTCACTCTGTTT 60.104 40.000 0.00 0.00 35.61 2.83
349 350 4.409247 ACTTTGGTAAGGACTCACTCTGTT 59.591 41.667 0.00 0.00 35.61 3.16
350 351 3.967987 ACTTTGGTAAGGACTCACTCTGT 59.032 43.478 0.00 0.00 35.61 3.41
351 352 4.608948 ACTTTGGTAAGGACTCACTCTG 57.391 45.455 0.00 0.00 35.61 3.35
352 353 5.839606 AGTTACTTTGGTAAGGACTCACTCT 59.160 40.000 0.00 0.00 38.42 3.24
353 354 6.099159 AGTTACTTTGGTAAGGACTCACTC 57.901 41.667 0.00 0.00 38.42 3.51
354 355 7.289549 AGTTAGTTACTTTGGTAAGGACTCACT 59.710 37.037 0.00 0.00 38.42 3.41
355 356 7.440198 AGTTAGTTACTTTGGTAAGGACTCAC 58.560 38.462 0.00 0.00 38.42 3.51
356 357 7.607615 AGTTAGTTACTTTGGTAAGGACTCA 57.392 36.000 0.00 0.00 38.42 3.41
357 358 8.801299 AGTAGTTAGTTACTTTGGTAAGGACTC 58.199 37.037 0.00 0.00 38.42 3.36
358 359 8.718158 AGTAGTTAGTTACTTTGGTAAGGACT 57.282 34.615 0.00 0.00 38.42 3.85
359 360 8.031864 GGAGTAGTTAGTTACTTTGGTAAGGAC 58.968 40.741 0.00 0.00 38.42 3.85
360 361 7.179160 GGGAGTAGTTAGTTACTTTGGTAAGGA 59.821 40.741 0.00 0.00 38.42 3.36
361 362 7.179872 AGGGAGTAGTTAGTTACTTTGGTAAGG 59.820 40.741 0.00 0.00 38.42 2.69
362 363 8.131847 AGGGAGTAGTTAGTTACTTTGGTAAG 57.868 38.462 0.00 0.00 38.42 2.34
363 364 7.179160 GGAGGGAGTAGTTAGTTACTTTGGTAA 59.821 40.741 0.00 0.00 38.33 2.85
364 365 6.665248 GGAGGGAGTAGTTAGTTACTTTGGTA 59.335 42.308 0.00 0.00 38.33 3.25
365 366 5.483231 GGAGGGAGTAGTTAGTTACTTTGGT 59.517 44.000 0.00 0.00 38.33 3.67
366 367 5.393896 CGGAGGGAGTAGTTAGTTACTTTGG 60.394 48.000 0.00 0.00 38.33 3.28
367 368 5.184671 ACGGAGGGAGTAGTTAGTTACTTTG 59.815 44.000 0.00 0.00 38.33 2.77
368 369 5.328565 ACGGAGGGAGTAGTTAGTTACTTT 58.671 41.667 0.00 0.00 38.33 2.66
369 370 4.928263 ACGGAGGGAGTAGTTAGTTACTT 58.072 43.478 0.00 0.00 38.33 2.24
370 371 4.582973 ACGGAGGGAGTAGTTAGTTACT 57.417 45.455 0.00 0.00 41.04 2.24
371 372 5.417266 AGAAACGGAGGGAGTAGTTAGTTAC 59.583 44.000 0.00 0.00 0.00 2.50
372 373 5.574188 AGAAACGGAGGGAGTAGTTAGTTA 58.426 41.667 0.00 0.00 0.00 2.24
373 374 4.414677 AGAAACGGAGGGAGTAGTTAGTT 58.585 43.478 0.00 0.00 0.00 2.24
374 375 4.044946 AGAAACGGAGGGAGTAGTTAGT 57.955 45.455 0.00 0.00 0.00 2.24
375 376 6.521151 TTTAGAAACGGAGGGAGTAGTTAG 57.479 41.667 0.00 0.00 0.00 2.34
376 377 8.773033 ATATTTAGAAACGGAGGGAGTAGTTA 57.227 34.615 0.00 0.00 0.00 2.24
377 378 7.672122 ATATTTAGAAACGGAGGGAGTAGTT 57.328 36.000 0.00 0.00 0.00 2.24
378 379 7.672122 AATATTTAGAAACGGAGGGAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
381 382 8.935741 AGATAAATATTTAGAAACGGAGGGAGT 58.064 33.333 13.15 0.00 0.00 3.85
382 383 9.780186 AAGATAAATATTTAGAAACGGAGGGAG 57.220 33.333 13.15 0.00 0.00 4.30
413 414 9.855361 CGTATGTGATAGTTCATTTGAAATCTC 57.145 33.333 0.00 0.00 35.58 2.75
414 415 8.830580 CCGTATGTGATAGTTCATTTGAAATCT 58.169 33.333 0.00 0.00 35.58 2.40
415 416 8.826710 TCCGTATGTGATAGTTCATTTGAAATC 58.173 33.333 0.00 0.00 35.58 2.17
416 417 8.731275 TCCGTATGTGATAGTTCATTTGAAAT 57.269 30.769 0.00 0.00 35.58 2.17
417 418 8.611757 CATCCGTATGTGATAGTTCATTTGAAA 58.388 33.333 0.00 0.00 35.58 2.69
418 419 7.768582 ACATCCGTATGTGATAGTTCATTTGAA 59.231 33.333 0.00 0.00 44.79 2.69
419 420 7.272244 ACATCCGTATGTGATAGTTCATTTGA 58.728 34.615 0.00 0.00 44.79 2.69
420 421 7.482654 ACATCCGTATGTGATAGTTCATTTG 57.517 36.000 0.00 0.00 44.79 2.32
463 464 8.034058 ACAGAGCAAAATAAGTGAATCTACAC 57.966 34.615 0.00 0.00 40.60 2.90
464 465 9.890629 ATACAGAGCAAAATAAGTGAATCTACA 57.109 29.630 0.00 0.00 0.00 2.74
466 467 9.890629 ACATACAGAGCAAAATAAGTGAATCTA 57.109 29.630 0.00 0.00 0.00 1.98
467 468 8.798859 ACATACAGAGCAAAATAAGTGAATCT 57.201 30.769 0.00 0.00 0.00 2.40
469 470 9.672673 ACTACATACAGAGCAAAATAAGTGAAT 57.327 29.630 0.00 0.00 0.00 2.57
470 471 9.151471 GACTACATACAGAGCAAAATAAGTGAA 57.849 33.333 0.00 0.00 0.00 3.18
471 472 8.311109 TGACTACATACAGAGCAAAATAAGTGA 58.689 33.333 0.00 0.00 0.00 3.41
472 473 8.383619 GTGACTACATACAGAGCAAAATAAGTG 58.616 37.037 0.00 0.00 0.00 3.16
473 474 8.314751 AGTGACTACATACAGAGCAAAATAAGT 58.685 33.333 0.00 0.00 0.00 2.24
474 475 8.709386 AGTGACTACATACAGAGCAAAATAAG 57.291 34.615 0.00 0.00 0.00 1.73
475 476 8.935844 CAAGTGACTACATACAGAGCAAAATAA 58.064 33.333 0.00 0.00 0.00 1.40
476 477 8.094548 ACAAGTGACTACATACAGAGCAAAATA 58.905 33.333 0.00 0.00 0.00 1.40
477 478 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
478 479 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
479 480 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
480 481 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
481 482 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
482 483 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
483 484 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
484 485 8.902540 AATTTCAACAAGTGACTACATACAGA 57.097 30.769 0.00 0.00 35.39 3.41
485 486 9.950680 AAAATTTCAACAAGTGACTACATACAG 57.049 29.630 0.00 0.00 35.39 2.74
523 524 9.941325 CAATCTACTCTCTGCATTCCTAAATAT 57.059 33.333 0.00 0.00 0.00 1.28
524 525 7.875041 GCAATCTACTCTCTGCATTCCTAAATA 59.125 37.037 0.00 0.00 34.87 1.40
525 526 6.709846 GCAATCTACTCTCTGCATTCCTAAAT 59.290 38.462 0.00 0.00 34.87 1.40
526 527 6.051717 GCAATCTACTCTCTGCATTCCTAAA 58.948 40.000 0.00 0.00 34.87 1.85
527 528 5.129320 TGCAATCTACTCTCTGCATTCCTAA 59.871 40.000 0.00 0.00 39.77 2.69
528 529 4.651045 TGCAATCTACTCTCTGCATTCCTA 59.349 41.667 0.00 0.00 39.77 2.94
529 530 3.453717 TGCAATCTACTCTCTGCATTCCT 59.546 43.478 0.00 0.00 39.77 3.36
530 531 3.801698 TGCAATCTACTCTCTGCATTCC 58.198 45.455 0.00 0.00 39.77 3.01
535 536 4.305769 CCACTATGCAATCTACTCTCTGC 58.694 47.826 0.00 0.00 35.32 4.26
536 537 4.305769 GCCACTATGCAATCTACTCTCTG 58.694 47.826 0.00 0.00 0.00 3.35
537 538 3.005261 CGCCACTATGCAATCTACTCTCT 59.995 47.826 0.00 0.00 0.00 3.10
538 539 3.312828 CGCCACTATGCAATCTACTCTC 58.687 50.000 0.00 0.00 0.00 3.20
539 540 2.546795 GCGCCACTATGCAATCTACTCT 60.547 50.000 0.00 0.00 0.00 3.24
540 541 1.795286 GCGCCACTATGCAATCTACTC 59.205 52.381 0.00 0.00 0.00 2.59
541 542 1.541233 GGCGCCACTATGCAATCTACT 60.541 52.381 24.80 0.00 0.00 2.57
542 543 0.868406 GGCGCCACTATGCAATCTAC 59.132 55.000 24.80 0.00 0.00 2.59
543 544 0.467804 TGGCGCCACTATGCAATCTA 59.532 50.000 29.03 0.00 0.00 1.98
544 545 0.394216 TTGGCGCCACTATGCAATCT 60.394 50.000 32.95 0.00 0.00 2.40
545 546 0.455410 TTTGGCGCCACTATGCAATC 59.545 50.000 32.95 0.00 0.00 2.67
546 547 0.173255 GTTTGGCGCCACTATGCAAT 59.827 50.000 32.95 0.00 0.00 3.56
547 548 1.175347 TGTTTGGCGCCACTATGCAA 61.175 50.000 32.95 17.66 0.00 4.08
548 549 1.175347 TTGTTTGGCGCCACTATGCA 61.175 50.000 32.95 19.97 0.00 3.96
549 550 0.038709 TTTGTTTGGCGCCACTATGC 60.039 50.000 32.95 17.52 0.00 3.14
550 551 1.981254 CTTTGTTTGGCGCCACTATG 58.019 50.000 32.95 13.85 0.00 2.23
551 552 0.243636 GCTTTGTTTGGCGCCACTAT 59.756 50.000 32.95 0.00 0.00 2.12
552 553 1.103987 TGCTTTGTTTGGCGCCACTA 61.104 50.000 32.95 18.37 0.00 2.74
553 554 1.747325 ATGCTTTGTTTGGCGCCACT 61.747 50.000 32.95 2.86 0.00 4.00
554 555 0.038709 TATGCTTTGTTTGGCGCCAC 60.039 50.000 32.95 20.33 0.00 5.01
555 556 0.243365 CTATGCTTTGTTTGGCGCCA 59.757 50.000 29.03 29.03 0.00 5.69
556 557 1.078201 GCTATGCTTTGTTTGGCGCC 61.078 55.000 22.73 22.73 0.00 6.53
557 558 0.388391 TGCTATGCTTTGTTTGGCGC 60.388 50.000 0.00 0.00 0.00 6.53
558 559 2.282701 ATGCTATGCTTTGTTTGGCG 57.717 45.000 0.00 0.00 0.00 5.69
559 560 4.376340 ACTATGCTATGCTTTGTTTGGC 57.624 40.909 0.00 0.00 0.00 4.52
560 561 5.066375 TGCTACTATGCTATGCTTTGTTTGG 59.934 40.000 0.00 0.00 0.00 3.28
561 562 6.122850 TGCTACTATGCTATGCTTTGTTTG 57.877 37.500 0.00 0.00 0.00 2.93
562 563 6.293081 CGATGCTACTATGCTATGCTTTGTTT 60.293 38.462 0.00 0.00 0.00 2.83
563 564 5.178252 CGATGCTACTATGCTATGCTTTGTT 59.822 40.000 0.00 0.00 0.00 2.83
564 565 4.687948 CGATGCTACTATGCTATGCTTTGT 59.312 41.667 0.00 0.00 0.00 2.83
565 566 4.925646 TCGATGCTACTATGCTATGCTTTG 59.074 41.667 0.00 0.00 0.00 2.77
566 567 5.139435 TCGATGCTACTATGCTATGCTTT 57.861 39.130 0.00 0.00 0.00 3.51
567 568 4.790765 TCGATGCTACTATGCTATGCTT 57.209 40.909 0.00 0.00 0.00 3.91
568 569 4.021981 TGTTCGATGCTACTATGCTATGCT 60.022 41.667 0.00 0.00 0.00 3.79
569 570 4.237724 TGTTCGATGCTACTATGCTATGC 58.762 43.478 0.00 0.00 0.00 3.14
570 571 6.198029 GCTATGTTCGATGCTACTATGCTATG 59.802 42.308 0.00 0.00 0.00 2.23
571 572 6.127619 TGCTATGTTCGATGCTACTATGCTAT 60.128 38.462 0.00 0.00 0.00 2.97
572 573 5.183140 TGCTATGTTCGATGCTACTATGCTA 59.817 40.000 0.00 0.00 0.00 3.49
573 574 4.021981 TGCTATGTTCGATGCTACTATGCT 60.022 41.667 0.00 0.00 0.00 3.79
574 575 4.237724 TGCTATGTTCGATGCTACTATGC 58.762 43.478 0.00 0.00 0.00 3.14
575 576 7.475840 TCTATGCTATGTTCGATGCTACTATG 58.524 38.462 0.00 0.00 0.00 2.23
576 577 7.338196 ACTCTATGCTATGTTCGATGCTACTAT 59.662 37.037 0.00 0.00 0.00 2.12
577 578 6.655425 ACTCTATGCTATGTTCGATGCTACTA 59.345 38.462 0.00 0.00 0.00 1.82
578 579 5.475220 ACTCTATGCTATGTTCGATGCTACT 59.525 40.000 0.00 0.00 0.00 2.57
579 580 5.704888 ACTCTATGCTATGTTCGATGCTAC 58.295 41.667 0.00 0.00 0.00 3.58
580 581 5.966742 ACTCTATGCTATGTTCGATGCTA 57.033 39.130 0.00 0.00 0.00 3.49
581 582 4.862902 ACTCTATGCTATGTTCGATGCT 57.137 40.909 0.00 0.00 0.00 3.79
582 583 5.914085 AAACTCTATGCTATGTTCGATGC 57.086 39.130 0.00 0.00 0.00 3.91
583 584 6.346120 CCGAAAACTCTATGCTATGTTCGATG 60.346 42.308 4.21 0.00 39.04 3.84
584 585 5.692204 CCGAAAACTCTATGCTATGTTCGAT 59.308 40.000 4.21 0.00 39.04 3.59
585 586 5.041287 CCGAAAACTCTATGCTATGTTCGA 58.959 41.667 4.21 0.00 39.04 3.71
586 587 5.041287 TCCGAAAACTCTATGCTATGTTCG 58.959 41.667 0.00 0.00 37.08 3.95
587 588 6.903883 TTCCGAAAACTCTATGCTATGTTC 57.096 37.500 0.00 0.00 0.00 3.18
588 589 7.148239 CCTTTTCCGAAAACTCTATGCTATGTT 60.148 37.037 2.01 0.00 0.00 2.71
589 590 6.316390 CCTTTTCCGAAAACTCTATGCTATGT 59.684 38.462 2.01 0.00 0.00 2.29
590 591 6.238484 CCCTTTTCCGAAAACTCTATGCTATG 60.238 42.308 2.01 0.00 0.00 2.23
591 592 5.823045 CCCTTTTCCGAAAACTCTATGCTAT 59.177 40.000 2.01 0.00 0.00 2.97
592 593 5.046159 TCCCTTTTCCGAAAACTCTATGCTA 60.046 40.000 2.01 0.00 0.00 3.49
593 594 4.010349 CCCTTTTCCGAAAACTCTATGCT 58.990 43.478 2.01 0.00 0.00 3.79
594 595 4.007659 TCCCTTTTCCGAAAACTCTATGC 58.992 43.478 2.01 0.00 0.00 3.14
595 596 6.599638 AGATTCCCTTTTCCGAAAACTCTATG 59.400 38.462 2.01 0.00 0.00 2.23
596 597 6.722328 AGATTCCCTTTTCCGAAAACTCTAT 58.278 36.000 2.01 0.00 0.00 1.98
597 598 6.123045 AGATTCCCTTTTCCGAAAACTCTA 57.877 37.500 2.01 0.00 0.00 2.43
598 599 4.986783 AGATTCCCTTTTCCGAAAACTCT 58.013 39.130 2.01 0.00 0.00 3.24
599 600 5.240844 TGAAGATTCCCTTTTCCGAAAACTC 59.759 40.000 2.01 0.00 34.68 3.01
600 601 5.137551 TGAAGATTCCCTTTTCCGAAAACT 58.862 37.500 2.01 0.00 34.68 2.66
601 602 5.447624 TGAAGATTCCCTTTTCCGAAAAC 57.552 39.130 2.01 0.00 34.68 2.43
602 603 7.768807 TTATGAAGATTCCCTTTTCCGAAAA 57.231 32.000 6.16 6.16 34.68 2.29
603 604 7.768807 TTTATGAAGATTCCCTTTTCCGAAA 57.231 32.000 0.00 0.00 34.68 3.46
604 605 7.768807 TTTTATGAAGATTCCCTTTTCCGAA 57.231 32.000 0.00 0.00 34.68 4.30
605 606 7.768807 TTTTTATGAAGATTCCCTTTTCCGA 57.231 32.000 0.00 0.00 34.68 4.55
606 607 7.432252 CGATTTTTATGAAGATTCCCTTTTCCG 59.568 37.037 0.00 0.00 34.68 4.30
607 608 7.706607 CCGATTTTTATGAAGATTCCCTTTTCC 59.293 37.037 0.00 0.00 34.68 3.13
608 609 8.251026 ACCGATTTTTATGAAGATTCCCTTTTC 58.749 33.333 0.00 0.00 34.68 2.29
609 610 8.134202 ACCGATTTTTATGAAGATTCCCTTTT 57.866 30.769 0.00 0.00 34.68 2.27
610 611 7.718334 ACCGATTTTTATGAAGATTCCCTTT 57.282 32.000 0.00 0.00 34.68 3.11
611 612 8.996651 ATACCGATTTTTATGAAGATTCCCTT 57.003 30.769 0.00 0.00 37.93 3.95
612 613 9.503399 GTATACCGATTTTTATGAAGATTCCCT 57.497 33.333 0.00 0.00 0.00 4.20
613 614 8.727910 GGTATACCGATTTTTATGAAGATTCCC 58.272 37.037 6.06 0.00 0.00 3.97
632 633 4.067896 TGGTTATCGTCTCTCGGTATACC 58.932 47.826 12.27 12.27 37.11 2.73
633 634 5.679734 TTGGTTATCGTCTCTCGGTATAC 57.320 43.478 0.00 0.00 40.32 1.47
634 635 6.460123 GGTTTTGGTTATCGTCTCTCGGTATA 60.460 42.308 0.00 0.00 40.32 1.47
635 636 5.346522 GTTTTGGTTATCGTCTCTCGGTAT 58.653 41.667 0.00 0.00 40.32 2.73
636 637 4.380867 GGTTTTGGTTATCGTCTCTCGGTA 60.381 45.833 0.00 0.00 40.32 4.02
637 638 3.582780 GTTTTGGTTATCGTCTCTCGGT 58.417 45.455 0.00 0.00 40.32 4.69
638 639 2.928116 GGTTTTGGTTATCGTCTCTCGG 59.072 50.000 0.00 0.00 40.32 4.63
639 640 2.928116 GGGTTTTGGTTATCGTCTCTCG 59.072 50.000 0.00 0.00 41.41 4.04
640 641 3.933332 CTGGGTTTTGGTTATCGTCTCTC 59.067 47.826 0.00 0.00 0.00 3.20
641 642 3.868754 GCTGGGTTTTGGTTATCGTCTCT 60.869 47.826 0.00 0.00 0.00 3.10
642 643 2.418976 GCTGGGTTTTGGTTATCGTCTC 59.581 50.000 0.00 0.00 0.00 3.36
643 644 2.433436 GCTGGGTTTTGGTTATCGTCT 58.567 47.619 0.00 0.00 0.00 4.18
644 645 1.471287 GGCTGGGTTTTGGTTATCGTC 59.529 52.381 0.00 0.00 0.00 4.20
645 646 1.074889 AGGCTGGGTTTTGGTTATCGT 59.925 47.619 0.00 0.00 0.00 3.73
646 647 1.834188 AGGCTGGGTTTTGGTTATCG 58.166 50.000 0.00 0.00 0.00 2.92
647 648 3.576550 TCAAAGGCTGGGTTTTGGTTATC 59.423 43.478 0.00 0.00 35.52 1.75
648 649 3.582164 TCAAAGGCTGGGTTTTGGTTAT 58.418 40.909 0.00 0.00 35.52 1.89
649 650 3.033659 TCAAAGGCTGGGTTTTGGTTA 57.966 42.857 0.00 0.00 35.52 2.85
650 651 1.872773 TCAAAGGCTGGGTTTTGGTT 58.127 45.000 0.00 0.00 35.52 3.67
651 652 1.693606 CATCAAAGGCTGGGTTTTGGT 59.306 47.619 0.00 0.00 35.52 3.67
652 653 1.002315 CCATCAAAGGCTGGGTTTTGG 59.998 52.381 0.00 0.00 35.52 3.28
653 654 1.969923 TCCATCAAAGGCTGGGTTTTG 59.030 47.619 0.00 0.00 36.00 2.44
654 655 2.250924 CTCCATCAAAGGCTGGGTTTT 58.749 47.619 0.00 0.00 33.13 2.43
655 656 1.928868 CTCCATCAAAGGCTGGGTTT 58.071 50.000 0.00 0.00 33.13 3.27
656 657 0.613012 GCTCCATCAAAGGCTGGGTT 60.613 55.000 0.00 0.00 33.13 4.11
657 658 1.000396 GCTCCATCAAAGGCTGGGT 60.000 57.895 0.00 0.00 33.13 4.51
658 659 1.000521 TGCTCCATCAAAGGCTGGG 60.001 57.895 0.00 0.00 33.13 4.45
659 660 1.035932 CCTGCTCCATCAAAGGCTGG 61.036 60.000 0.00 0.00 37.43 4.85
660 661 0.323178 ACCTGCTCCATCAAAGGCTG 60.323 55.000 0.00 0.00 32.73 4.85
661 662 0.034670 GACCTGCTCCATCAAAGGCT 60.035 55.000 0.00 0.00 32.73 4.58
662 663 1.034292 GGACCTGCTCCATCAAAGGC 61.034 60.000 0.00 0.00 39.21 4.35
663 664 0.622665 AGGACCTGCTCCATCAAAGG 59.377 55.000 0.00 0.00 42.46 3.11
664 665 1.004044 ACAGGACCTGCTCCATCAAAG 59.996 52.381 21.95 0.00 42.46 2.77
665 666 1.067295 ACAGGACCTGCTCCATCAAA 58.933 50.000 21.95 0.00 42.46 2.69
666 667 1.951209 TACAGGACCTGCTCCATCAA 58.049 50.000 21.95 0.00 42.46 2.57
667 668 1.833630 CTTACAGGACCTGCTCCATCA 59.166 52.381 21.95 0.00 42.46 3.07
668 669 1.834263 ACTTACAGGACCTGCTCCATC 59.166 52.381 21.95 0.00 42.46 3.51
669 670 1.556911 CACTTACAGGACCTGCTCCAT 59.443 52.381 21.95 4.01 42.46 3.41
670 671 0.976641 CACTTACAGGACCTGCTCCA 59.023 55.000 21.95 1.43 42.46 3.86
671 672 0.250513 CCACTTACAGGACCTGCTCC 59.749 60.000 21.95 0.00 39.81 4.70
672 673 1.205893 CTCCACTTACAGGACCTGCTC 59.794 57.143 21.95 0.00 34.37 4.26
673 674 1.270907 CTCCACTTACAGGACCTGCT 58.729 55.000 21.95 11.16 34.37 4.24
674 675 0.391793 GCTCCACTTACAGGACCTGC 60.392 60.000 21.95 0.00 34.37 4.85
675 676 1.066573 CAGCTCCACTTACAGGACCTG 60.067 57.143 20.45 20.45 33.77 4.00
676 677 1.270907 CAGCTCCACTTACAGGACCT 58.729 55.000 0.00 0.00 0.00 3.85
677 678 0.977395 ACAGCTCCACTTACAGGACC 59.023 55.000 0.00 0.00 0.00 4.46
678 679 2.417719 CAACAGCTCCACTTACAGGAC 58.582 52.381 0.00 0.00 0.00 3.85
679 680 1.270839 GCAACAGCTCCACTTACAGGA 60.271 52.381 0.00 0.00 0.00 3.86
680 681 1.160137 GCAACAGCTCCACTTACAGG 58.840 55.000 0.00 0.00 0.00 4.00
681 682 1.882912 TGCAACAGCTCCACTTACAG 58.117 50.000 0.00 0.00 0.00 2.74
682 683 2.340210 TTGCAACAGCTCCACTTACA 57.660 45.000 0.00 0.00 0.00 2.41
683 684 3.372060 GTTTTGCAACAGCTCCACTTAC 58.628 45.455 0.00 0.00 32.54 2.34
684 685 2.032799 CGTTTTGCAACAGCTCCACTTA 59.967 45.455 0.00 0.00 32.54 2.24
685 686 1.202290 CGTTTTGCAACAGCTCCACTT 60.202 47.619 0.00 0.00 32.54 3.16
686 687 0.381801 CGTTTTGCAACAGCTCCACT 59.618 50.000 0.00 0.00 32.54 4.00
733 740 6.635641 CGTGGCATATCAAATCATGAAAGAAG 59.364 38.462 0.00 0.00 42.54 2.85
773 782 2.496257 GCGGCTTTTAATGTGCGCG 61.496 57.895 0.00 0.00 0.00 6.86
838 847 0.237498 GTACCGCCAAAAGCTGTGAC 59.763 55.000 0.00 0.00 39.52 3.67
893 902 2.153034 AGCTTGTAGGAGGAGAGGAC 57.847 55.000 0.00 0.00 0.00 3.85
911 920 1.066587 AGCGCGGCTAGCTCTTAAG 59.933 57.895 15.72 0.00 41.83 1.85
987 1001 1.414181 CTCTCCATTGACGTATGGGCT 59.586 52.381 15.72 0.00 44.32 5.19
1037 1051 4.966787 CCGGGGTGGTGGTTGTGG 62.967 72.222 0.00 0.00 0.00 4.17
1140 1154 1.738099 CGAGGAAGAAGCCGTGGTG 60.738 63.158 0.00 0.00 0.00 4.17
1143 1157 1.801913 CGTCGAGGAAGAAGCCGTG 60.802 63.158 0.00 0.00 0.00 4.94
1146 1160 1.514443 CGACGTCGAGGAAGAAGCC 60.514 63.158 33.35 0.00 43.02 4.35
1180 1194 4.796231 CCACGACCTCGCCTTCGG 62.796 72.222 0.00 0.00 44.43 4.30
1378 1392 5.471456 CAGGCAGAAAATAGAATAAGCCGAT 59.529 40.000 0.00 0.00 45.19 4.18
1391 1405 3.118884 GCAATGATCACCAGGCAGAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
1416 1430 0.036010 CCTCTTGGATCACGGCAAGT 60.036 55.000 8.65 0.00 34.57 3.16
1460 1474 3.480470 CCAGAGCTGACAAAAGGAAGAA 58.520 45.455 0.00 0.00 0.00 2.52
1471 1485 2.807045 CACGACGCCAGAGCTGAC 60.807 66.667 0.00 0.00 36.60 3.51
1473 1487 1.498865 AAAACACGACGCCAGAGCTG 61.499 55.000 0.00 0.00 36.60 4.24
1515 1530 3.137544 TCTTTCCTGCAACCTTCCACTTA 59.862 43.478 0.00 0.00 0.00 2.24
1532 1547 2.027653 AGTCTGCAGCTACCCTTCTTTC 60.028 50.000 9.47 0.00 0.00 2.62
1544 1559 0.250038 TGGTCAAGACAGTCTGCAGC 60.250 55.000 9.47 4.26 0.00 5.25
1643 1730 2.636830 CCAGATGAACATCCCAGACAC 58.363 52.381 10.63 0.00 38.58 3.67
1644 1731 1.065199 GCCAGATGAACATCCCAGACA 60.065 52.381 10.63 0.00 38.58 3.41
1645 1732 1.673168 GCCAGATGAACATCCCAGAC 58.327 55.000 10.63 0.00 38.58 3.51
1646 1733 0.548031 GGCCAGATGAACATCCCAGA 59.452 55.000 10.63 0.00 38.58 3.86
1662 1749 0.963355 TATTTGCAACCGTCCAGGCC 60.963 55.000 0.00 0.00 46.52 5.19
1701 1788 1.896220 CCTTGCAACTAACCTGCTCA 58.104 50.000 0.00 0.00 40.59 4.26
1756 1846 1.929836 GGACGAACATGAGAGCATCAC 59.070 52.381 0.00 0.00 41.91 3.06
1835 1926 9.163894 TGAAGATGGATATATCAGAAGTTTCCT 57.836 33.333 14.60 0.00 0.00 3.36
1853 1944 8.267620 TGTTGTACTGTTATGATTGAAGATGG 57.732 34.615 0.00 0.00 0.00 3.51
1916 2433 4.396166 GCTTGTAGTCGTTACTAGGTGGTA 59.604 45.833 0.00 0.00 38.89 3.25
1926 2443 3.243602 TGCTTCAGTGCTTGTAGTCGTTA 60.244 43.478 0.00 0.00 0.00 3.18
1927 2444 2.135933 GCTTCAGTGCTTGTAGTCGTT 58.864 47.619 0.00 0.00 0.00 3.85
1962 2479 2.498941 GGAGGGTCGATGATGGCGA 61.499 63.158 0.00 0.00 35.08 5.54
2020 2538 6.228258 TGAGGTCTTAGCACGATAACTTTTT 58.772 36.000 0.00 0.00 0.00 1.94
2022 2540 5.401531 TGAGGTCTTAGCACGATAACTTT 57.598 39.130 0.00 0.00 0.00 2.66
2027 2545 5.241064 GGTTCTATGAGGTCTTAGCACGATA 59.759 44.000 0.00 0.00 0.00 2.92
2028 2546 4.038162 GGTTCTATGAGGTCTTAGCACGAT 59.962 45.833 0.00 0.00 0.00 3.73
2039 3777 7.399191 TGTTCTAGTGTATTGGTTCTATGAGGT 59.601 37.037 0.00 0.00 0.00 3.85
2042 3780 8.590204 TGTTGTTCTAGTGTATTGGTTCTATGA 58.410 33.333 0.00 0.00 0.00 2.15
2046 3784 7.117812 CGATTGTTGTTCTAGTGTATTGGTTCT 59.882 37.037 0.00 0.00 0.00 3.01
2055 3793 2.066262 CGGCGATTGTTGTTCTAGTGT 58.934 47.619 0.00 0.00 0.00 3.55
2056 3794 1.201921 GCGGCGATTGTTGTTCTAGTG 60.202 52.381 12.98 0.00 0.00 2.74
2059 3797 1.730064 GAAGCGGCGATTGTTGTTCTA 59.270 47.619 17.76 0.00 0.00 2.10
2066 3804 1.234821 TGAAAAGAAGCGGCGATTGT 58.765 45.000 17.76 8.96 0.00 2.71
2101 3839 5.934625 TCCTATCTCTCAAAGTCAAAAGCAC 59.065 40.000 0.00 0.00 0.00 4.40
2157 3895 0.680061 GGAGTGGCCTAAGGGTATCG 59.320 60.000 3.32 0.00 34.45 2.92
2250 3989 8.939201 TTGCAACTTCATTTCAAGTCAATAAA 57.061 26.923 0.00 0.00 35.45 1.40
2270 4009 5.781210 TCATTGTGTTTGTATCCTTGCAA 57.219 34.783 0.00 0.00 0.00 4.08
2327 4067 7.712204 TTGTGTGTATCCTCAGTGTTAGATA 57.288 36.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.