Multiple sequence alignment - TraesCS7A01G358200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G358200 chr7A 100.000 2591 0 0 1 2591 527996927 527994337 0.000000e+00 4785.0
1 TraesCS7A01G358200 chr7A 95.849 265 11 0 106 370 578444754 578444490 1.840000e-116 429.0
2 TraesCS7A01G358200 chr7A 100.000 30 0 0 521 550 527996378 527996349 3.600000e-04 56.5
3 TraesCS7A01G358200 chr7A 100.000 30 0 0 550 579 527996407 527996378 3.600000e-04 56.5
4 TraesCS7A01G358200 chr7B 88.485 2093 123 49 561 2591 494434348 494436384 0.000000e+00 2422.0
5 TraesCS7A01G358200 chr7D 90.241 1578 79 34 550 2092 470836976 470838513 0.000000e+00 1991.0
6 TraesCS7A01G358200 chr7D 87.013 462 35 12 2148 2588 470838537 470838994 4.980000e-137 497.0
7 TraesCS7A01G358200 chr3A 84.164 562 70 11 1001 1548 145667235 145667791 6.350000e-146 527.0
8 TraesCS7A01G358200 chr3D 83.986 562 71 12 1001 1548 132275121 132275677 2.950000e-144 521.0
9 TraesCS7A01G358200 chr3D 94.340 265 14 1 102 366 91831624 91831887 3.100000e-109 405.0
10 TraesCS7A01G358200 chr3B 83.808 562 72 11 1001 1548 188877217 188877773 1.370000e-142 516.0
11 TraesCS7A01G358200 chr6A 95.489 266 11 1 105 369 514037586 514037321 8.570000e-115 424.0
12 TraesCS7A01G358200 chr6A 95.402 261 12 0 106 366 89591817 89592077 1.430000e-112 416.0
13 TraesCS7A01G358200 chr4A 95.149 268 12 1 105 372 62950251 62950517 3.080000e-114 422.0
14 TraesCS7A01G358200 chr4A 95.057 263 12 1 104 366 112854671 112854410 1.860000e-111 412.0
15 TraesCS7A01G358200 chr5A 95.038 262 13 0 105 366 85269503 85269764 1.860000e-111 412.0
16 TraesCS7A01G358200 chr6D 94.656 262 14 0 105 366 114949499 114949238 8.630000e-110 407.0
17 TraesCS7A01G358200 chr2A 94.030 268 15 1 104 370 625011942 625011675 3.100000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G358200 chr7A 527994337 527996927 2590 True 1632.666667 4785 100.000 1 2591 3 chr7A.!!$R2 2590
1 TraesCS7A01G358200 chr7B 494434348 494436384 2036 False 2422.000000 2422 88.485 561 2591 1 chr7B.!!$F1 2030
2 TraesCS7A01G358200 chr7D 470836976 470838994 2018 False 1244.000000 1991 88.627 550 2588 2 chr7D.!!$F1 2038
3 TraesCS7A01G358200 chr3A 145667235 145667791 556 False 527.000000 527 84.164 1001 1548 1 chr3A.!!$F1 547
4 TraesCS7A01G358200 chr3D 132275121 132275677 556 False 521.000000 521 83.986 1001 1548 1 chr3D.!!$F2 547
5 TraesCS7A01G358200 chr3B 188877217 188877773 556 False 516.000000 516 83.808 1001 1548 1 chr3B.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 520 0.111639 TGGGCCAGTAAAACCTCACC 59.888 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 1882 0.040067 CAAACGGCAGCCAGAGAAAC 60.04 55.0 13.3 0.0 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.460362 CGATGTGGATGCGGATATTTG 57.540 47.619 0.00 0.00 0.00 2.32
21 22 3.066380 CGATGTGGATGCGGATATTTGA 58.934 45.455 0.00 0.00 0.00 2.69
22 23 3.124128 CGATGTGGATGCGGATATTTGAG 59.876 47.826 0.00 0.00 0.00 3.02
23 24 2.849942 TGTGGATGCGGATATTTGAGG 58.150 47.619 0.00 0.00 0.00 3.86
24 25 2.154462 GTGGATGCGGATATTTGAGGG 58.846 52.381 0.00 0.00 0.00 4.30
25 26 1.073763 TGGATGCGGATATTTGAGGGG 59.926 52.381 0.00 0.00 0.00 4.79
26 27 1.073923 GGATGCGGATATTTGAGGGGT 59.926 52.381 0.00 0.00 0.00 4.95
27 28 2.304761 GGATGCGGATATTTGAGGGGTA 59.695 50.000 0.00 0.00 0.00 3.69
28 29 3.244770 GGATGCGGATATTTGAGGGGTAA 60.245 47.826 0.00 0.00 0.00 2.85
29 30 3.202829 TGCGGATATTTGAGGGGTAAC 57.797 47.619 0.00 0.00 0.00 2.50
52 53 2.480555 GCTGTCCGCGGATGTTTG 59.519 61.111 33.58 19.40 0.00 2.93
53 54 2.032634 GCTGTCCGCGGATGTTTGA 61.033 57.895 33.58 3.00 0.00 2.69
54 55 1.970917 GCTGTCCGCGGATGTTTGAG 61.971 60.000 33.58 19.58 0.00 3.02
55 56 1.361668 CTGTCCGCGGATGTTTGAGG 61.362 60.000 33.58 11.17 0.00 3.86
56 57 1.079405 GTCCGCGGATGTTTGAGGA 60.079 57.895 33.58 0.18 0.00 3.71
57 58 1.084370 GTCCGCGGATGTTTGAGGAG 61.084 60.000 33.58 0.00 34.61 3.69
58 59 1.079127 CCGCGGATGTTTGAGGAGT 60.079 57.895 24.07 0.00 0.00 3.85
59 60 1.361668 CCGCGGATGTTTGAGGAGTG 61.362 60.000 24.07 0.00 0.00 3.51
60 61 0.389817 CGCGGATGTTTGAGGAGTGA 60.390 55.000 0.00 0.00 0.00 3.41
61 62 1.363744 GCGGATGTTTGAGGAGTGAG 58.636 55.000 0.00 0.00 0.00 3.51
62 63 1.066858 GCGGATGTTTGAGGAGTGAGA 60.067 52.381 0.00 0.00 0.00 3.27
63 64 2.419297 GCGGATGTTTGAGGAGTGAGAT 60.419 50.000 0.00 0.00 0.00 2.75
64 65 3.866651 CGGATGTTTGAGGAGTGAGATT 58.133 45.455 0.00 0.00 0.00 2.40
65 66 4.256920 CGGATGTTTGAGGAGTGAGATTT 58.743 43.478 0.00 0.00 0.00 2.17
66 67 4.093998 CGGATGTTTGAGGAGTGAGATTTG 59.906 45.833 0.00 0.00 0.00 2.32
67 68 5.248640 GGATGTTTGAGGAGTGAGATTTGA 58.751 41.667 0.00 0.00 0.00 2.69
68 69 5.884792 GGATGTTTGAGGAGTGAGATTTGAT 59.115 40.000 0.00 0.00 0.00 2.57
69 70 6.183360 GGATGTTTGAGGAGTGAGATTTGATG 60.183 42.308 0.00 0.00 0.00 3.07
70 71 5.868454 TGTTTGAGGAGTGAGATTTGATGA 58.132 37.500 0.00 0.00 0.00 2.92
71 72 5.936372 TGTTTGAGGAGTGAGATTTGATGAG 59.064 40.000 0.00 0.00 0.00 2.90
72 73 5.752036 TTGAGGAGTGAGATTTGATGAGT 57.248 39.130 0.00 0.00 0.00 3.41
73 74 5.336150 TGAGGAGTGAGATTTGATGAGTC 57.664 43.478 0.00 0.00 0.00 3.36
74 75 5.022122 TGAGGAGTGAGATTTGATGAGTCT 58.978 41.667 0.00 0.00 0.00 3.24
75 76 5.105432 TGAGGAGTGAGATTTGATGAGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
76 77 4.161942 AGGAGTGAGATTTGATGAGTCTGG 59.838 45.833 0.00 0.00 0.00 3.86
77 78 4.161189 GGAGTGAGATTTGATGAGTCTGGA 59.839 45.833 0.00 0.00 0.00 3.86
78 79 5.163322 GGAGTGAGATTTGATGAGTCTGGAT 60.163 44.000 0.00 0.00 0.00 3.41
79 80 5.672503 AGTGAGATTTGATGAGTCTGGATG 58.327 41.667 0.00 0.00 0.00 3.51
80 81 5.189342 AGTGAGATTTGATGAGTCTGGATGT 59.811 40.000 0.00 0.00 0.00 3.06
81 82 6.382282 AGTGAGATTTGATGAGTCTGGATGTA 59.618 38.462 0.00 0.00 0.00 2.29
82 83 6.700960 GTGAGATTTGATGAGTCTGGATGTAG 59.299 42.308 0.00 0.00 0.00 2.74
83 84 6.608808 TGAGATTTGATGAGTCTGGATGTAGA 59.391 38.462 0.00 0.00 0.00 2.59
84 85 7.289549 TGAGATTTGATGAGTCTGGATGTAGAT 59.710 37.037 0.00 0.00 0.00 1.98
85 86 7.443477 AGATTTGATGAGTCTGGATGTAGATG 58.557 38.462 0.00 0.00 0.00 2.90
86 87 4.597404 TGATGAGTCTGGATGTAGATGC 57.403 45.455 0.00 0.00 0.00 3.91
87 88 3.323115 TGATGAGTCTGGATGTAGATGCC 59.677 47.826 0.00 0.00 0.00 4.40
88 89 1.683385 TGAGTCTGGATGTAGATGCCG 59.317 52.381 0.00 0.00 0.00 5.69
89 90 1.957177 GAGTCTGGATGTAGATGCCGA 59.043 52.381 0.00 0.00 0.00 5.54
90 91 1.959985 AGTCTGGATGTAGATGCCGAG 59.040 52.381 0.00 0.00 0.00 4.63
91 92 1.683917 GTCTGGATGTAGATGCCGAGT 59.316 52.381 0.00 0.00 0.00 4.18
92 93 2.885266 GTCTGGATGTAGATGCCGAGTA 59.115 50.000 0.00 0.00 0.00 2.59
93 94 3.318275 GTCTGGATGTAGATGCCGAGTAA 59.682 47.826 0.00 0.00 0.00 2.24
94 95 4.021894 GTCTGGATGTAGATGCCGAGTAAT 60.022 45.833 0.00 0.00 0.00 1.89
95 96 4.021981 TCTGGATGTAGATGCCGAGTAATG 60.022 45.833 0.00 0.00 0.00 1.90
96 97 3.641436 TGGATGTAGATGCCGAGTAATGT 59.359 43.478 0.00 0.00 0.00 2.71
97 98 4.100963 TGGATGTAGATGCCGAGTAATGTT 59.899 41.667 0.00 0.00 0.00 2.71
98 99 5.057149 GGATGTAGATGCCGAGTAATGTTT 58.943 41.667 0.00 0.00 0.00 2.83
99 100 6.183360 TGGATGTAGATGCCGAGTAATGTTTA 60.183 38.462 0.00 0.00 0.00 2.01
100 101 6.366332 GGATGTAGATGCCGAGTAATGTTTAG 59.634 42.308 0.00 0.00 0.00 1.85
101 102 6.459670 TGTAGATGCCGAGTAATGTTTAGA 57.540 37.500 0.00 0.00 0.00 2.10
102 103 7.050970 TGTAGATGCCGAGTAATGTTTAGAT 57.949 36.000 0.00 0.00 0.00 1.98
103 104 7.497595 TGTAGATGCCGAGTAATGTTTAGATT 58.502 34.615 0.00 0.00 0.00 2.40
104 105 8.635328 TGTAGATGCCGAGTAATGTTTAGATTA 58.365 33.333 0.00 0.00 0.00 1.75
105 106 9.640963 GTAGATGCCGAGTAATGTTTAGATTAT 57.359 33.333 0.00 0.00 0.00 1.28
107 108 9.640963 AGATGCCGAGTAATGTTTAGATTATAC 57.359 33.333 0.00 0.00 0.00 1.47
108 109 9.640963 GATGCCGAGTAATGTTTAGATTATACT 57.359 33.333 0.00 0.00 0.00 2.12
109 110 9.640963 ATGCCGAGTAATGTTTAGATTATACTC 57.359 33.333 0.00 0.00 0.00 2.59
110 111 8.086522 TGCCGAGTAATGTTTAGATTATACTCC 58.913 37.037 0.00 0.00 0.00 3.85
111 112 7.544915 GCCGAGTAATGTTTAGATTATACTCCC 59.455 40.741 0.00 0.00 0.00 4.30
112 113 8.804204 CCGAGTAATGTTTAGATTATACTCCCT 58.196 37.037 0.00 0.00 0.00 4.20
113 114 9.843334 CGAGTAATGTTTAGATTATACTCCCTC 57.157 37.037 0.00 0.00 0.00 4.30
115 116 8.804204 AGTAATGTTTAGATTATACTCCCTCCG 58.196 37.037 0.00 0.00 0.00 4.63
116 117 6.607004 ATGTTTAGATTATACTCCCTCCGG 57.393 41.667 0.00 0.00 0.00 5.14
117 118 5.461327 TGTTTAGATTATACTCCCTCCGGT 58.539 41.667 0.00 0.00 0.00 5.28
118 119 5.537674 TGTTTAGATTATACTCCCTCCGGTC 59.462 44.000 0.00 0.00 0.00 4.79
119 120 3.172471 AGATTATACTCCCTCCGGTCC 57.828 52.381 0.00 0.00 0.00 4.46
120 121 2.723010 AGATTATACTCCCTCCGGTCCT 59.277 50.000 0.00 0.00 0.00 3.85
121 122 3.142407 AGATTATACTCCCTCCGGTCCTT 59.858 47.826 0.00 0.00 0.00 3.36
122 123 3.409804 TTATACTCCCTCCGGTCCTTT 57.590 47.619 0.00 0.00 0.00 3.11
123 124 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
124 125 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
125 126 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
126 127 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
127 128 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
128 129 2.305052 CTCCCTCCGGTCCTTTTTACTT 59.695 50.000 0.00 0.00 0.00 2.24
129 130 2.712627 TCCCTCCGGTCCTTTTTACTTT 59.287 45.455 0.00 0.00 0.00 2.66
130 131 2.817844 CCCTCCGGTCCTTTTTACTTTG 59.182 50.000 0.00 0.00 0.00 2.77
131 132 2.228103 CCTCCGGTCCTTTTTACTTTGC 59.772 50.000 0.00 0.00 0.00 3.68
132 133 2.882137 CTCCGGTCCTTTTTACTTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
133 134 3.492337 TCCGGTCCTTTTTACTTTGCAT 58.508 40.909 0.00 0.00 0.00 3.96
134 135 4.653868 TCCGGTCCTTTTTACTTTGCATA 58.346 39.130 0.00 0.00 0.00 3.14
135 136 5.258051 TCCGGTCCTTTTTACTTTGCATAT 58.742 37.500 0.00 0.00 0.00 1.78
136 137 6.416415 TCCGGTCCTTTTTACTTTGCATATA 58.584 36.000 0.00 0.00 0.00 0.86
137 138 6.885376 TCCGGTCCTTTTTACTTTGCATATAA 59.115 34.615 0.00 0.00 0.00 0.98
138 139 7.066525 TCCGGTCCTTTTTACTTTGCATATAAG 59.933 37.037 0.00 0.00 0.00 1.73
139 140 7.066525 CCGGTCCTTTTTACTTTGCATATAAGA 59.933 37.037 3.66 0.00 0.00 2.10
140 141 8.455682 CGGTCCTTTTTACTTTGCATATAAGAA 58.544 33.333 3.66 0.00 0.00 2.52
243 244 7.962918 ACAATATGAAAACTAAAGTCATGACGC 59.037 33.333 19.85 0.00 34.01 5.19
244 245 5.940192 ATGAAAACTAAAGTCATGACGCA 57.060 34.783 19.85 8.35 36.20 5.24
245 246 5.940192 TGAAAACTAAAGTCATGACGCAT 57.060 34.783 19.85 12.36 36.20 4.73
246 247 5.927030 TGAAAACTAAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
247 248 5.700832 TGAAAACTAAAGTCATGACGCATCT 59.299 36.000 19.85 6.79 36.20 2.90
248 249 6.871492 TGAAAACTAAAGTCATGACGCATCTA 59.129 34.615 19.85 7.52 36.20 1.98
249 250 7.386573 TGAAAACTAAAGTCATGACGCATCTAA 59.613 33.333 19.85 2.63 36.20 2.10
250 251 7.849804 AAACTAAAGTCATGACGCATCTAAT 57.150 32.000 19.85 2.37 36.20 1.73
251 252 6.834959 ACTAAAGTCATGACGCATCTAATG 57.165 37.500 19.85 7.39 36.20 1.90
252 253 6.341316 ACTAAAGTCATGACGCATCTAATGT 58.659 36.000 19.85 7.94 36.20 2.71
253 254 6.818644 ACTAAAGTCATGACGCATCTAATGTT 59.181 34.615 19.85 2.19 36.20 2.71
254 255 5.475273 AAGTCATGACGCATCTAATGTTG 57.525 39.130 19.85 0.00 36.20 3.33
255 256 4.507710 AGTCATGACGCATCTAATGTTGT 58.492 39.130 19.85 0.00 36.20 3.32
256 257 4.937620 AGTCATGACGCATCTAATGTTGTT 59.062 37.500 19.85 0.00 36.20 2.83
257 258 5.023920 GTCATGACGCATCTAATGTTGTTG 58.976 41.667 10.69 0.00 0.00 3.33
258 259 4.934602 TCATGACGCATCTAATGTTGTTGA 59.065 37.500 0.00 0.00 0.00 3.18
259 260 5.585844 TCATGACGCATCTAATGTTGTTGAT 59.414 36.000 0.00 0.00 0.00 2.57
260 261 5.878332 TGACGCATCTAATGTTGTTGATT 57.122 34.783 0.00 0.00 0.00 2.57
261 262 6.252967 TGACGCATCTAATGTTGTTGATTT 57.747 33.333 0.00 0.00 0.00 2.17
262 263 6.314018 TGACGCATCTAATGTTGTTGATTTC 58.686 36.000 0.00 0.00 0.00 2.17
263 264 6.072783 TGACGCATCTAATGTTGTTGATTTCA 60.073 34.615 0.00 0.00 0.00 2.69
264 265 6.086222 ACGCATCTAATGTTGTTGATTTCAC 58.914 36.000 0.00 0.00 0.00 3.18
265 266 6.085573 CGCATCTAATGTTGTTGATTTCACA 58.914 36.000 0.00 0.00 0.00 3.58
266 267 6.748658 CGCATCTAATGTTGTTGATTTCACAT 59.251 34.615 0.00 0.00 0.00 3.21
267 268 7.274033 CGCATCTAATGTTGTTGATTTCACATT 59.726 33.333 0.00 0.00 0.00 2.71
268 269 8.589629 GCATCTAATGTTGTTGATTTCACATTC 58.410 33.333 0.00 0.00 0.00 2.67
269 270 9.850628 CATCTAATGTTGTTGATTTCACATTCT 57.149 29.630 0.00 0.00 0.00 2.40
270 271 9.850628 ATCTAATGTTGTTGATTTCACATTCTG 57.149 29.630 0.00 0.00 0.00 3.02
271 272 9.065798 TCTAATGTTGTTGATTTCACATTCTGA 57.934 29.630 0.00 0.00 0.00 3.27
272 273 9.681692 CTAATGTTGTTGATTTCACATTCTGAA 57.318 29.630 0.00 0.00 37.08 3.02
274 275 7.933728 TGTTGTTGATTTCACATTCTGAATG 57.066 32.000 24.79 24.79 44.48 2.67
316 317 4.205323 CTTGGTCAAAGTTTACGTGGTC 57.795 45.455 0.00 0.00 0.00 4.02
317 318 3.547054 TGGTCAAAGTTTACGTGGTCT 57.453 42.857 0.00 0.00 0.00 3.85
318 319 3.199677 TGGTCAAAGTTTACGTGGTCTG 58.800 45.455 0.00 0.00 0.00 3.51
319 320 3.118702 TGGTCAAAGTTTACGTGGTCTGA 60.119 43.478 0.00 0.00 0.00 3.27
320 321 3.246936 GGTCAAAGTTTACGTGGTCTGAC 59.753 47.826 0.00 0.00 32.94 3.51
321 322 4.117685 GTCAAAGTTTACGTGGTCTGACT 58.882 43.478 7.85 0.00 31.42 3.41
322 323 4.569564 GTCAAAGTTTACGTGGTCTGACTT 59.430 41.667 7.85 0.00 31.42 3.01
323 324 4.807304 TCAAAGTTTACGTGGTCTGACTTC 59.193 41.667 7.85 0.73 0.00 3.01
324 325 4.395959 AAGTTTACGTGGTCTGACTTCA 57.604 40.909 7.85 0.00 0.00 3.02
325 326 4.395959 AGTTTACGTGGTCTGACTTCAA 57.604 40.909 7.85 0.00 0.00 2.69
326 327 4.761975 AGTTTACGTGGTCTGACTTCAAA 58.238 39.130 7.85 0.00 0.00 2.69
327 328 4.569564 AGTTTACGTGGTCTGACTTCAAAC 59.430 41.667 7.85 10.55 0.00 2.93
328 329 2.684001 ACGTGGTCTGACTTCAAACA 57.316 45.000 7.85 0.00 0.00 2.83
329 330 2.980568 ACGTGGTCTGACTTCAAACAA 58.019 42.857 7.85 0.00 0.00 2.83
330 331 3.340034 ACGTGGTCTGACTTCAAACAAA 58.660 40.909 7.85 0.00 0.00 2.83
331 332 3.945285 ACGTGGTCTGACTTCAAACAAAT 59.055 39.130 7.85 0.00 0.00 2.32
332 333 4.035208 ACGTGGTCTGACTTCAAACAAATC 59.965 41.667 7.85 0.00 0.00 2.17
333 334 4.273480 CGTGGTCTGACTTCAAACAAATCT 59.727 41.667 7.85 0.00 0.00 2.40
334 335 5.220854 CGTGGTCTGACTTCAAACAAATCTT 60.221 40.000 7.85 0.00 0.00 2.40
335 336 6.018262 CGTGGTCTGACTTCAAACAAATCTTA 60.018 38.462 7.85 0.00 0.00 2.10
336 337 7.307989 CGTGGTCTGACTTCAAACAAATCTTAT 60.308 37.037 7.85 0.00 0.00 1.73
337 338 8.999431 GTGGTCTGACTTCAAACAAATCTTATA 58.001 33.333 7.85 0.00 0.00 0.98
338 339 9.739276 TGGTCTGACTTCAAACAAATCTTATAT 57.261 29.630 7.85 0.00 0.00 0.86
339 340 9.994432 GGTCTGACTTCAAACAAATCTTATATG 57.006 33.333 7.85 0.00 0.00 1.78
340 341 9.495754 GTCTGACTTCAAACAAATCTTATATGC 57.504 33.333 0.00 0.00 0.00 3.14
341 342 8.390354 TCTGACTTCAAACAAATCTTATATGCG 58.610 33.333 0.00 0.00 0.00 4.73
342 343 8.262715 TGACTTCAAACAAATCTTATATGCGA 57.737 30.769 0.00 0.00 0.00 5.10
343 344 8.726068 TGACTTCAAACAAATCTTATATGCGAA 58.274 29.630 0.00 0.00 0.00 4.70
344 345 8.895932 ACTTCAAACAAATCTTATATGCGAAC 57.104 30.769 0.00 0.00 0.00 3.95
345 346 8.730680 ACTTCAAACAAATCTTATATGCGAACT 58.269 29.630 0.00 0.00 0.00 3.01
355 356 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
356 357 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
357 358 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
358 359 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
359 360 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
377 378 4.759782 CGGAGGGAGTATATAGCCAAATG 58.240 47.826 4.45 0.00 0.00 2.32
378 379 4.518249 GGAGGGAGTATATAGCCAAATGC 58.482 47.826 4.45 0.00 41.71 3.56
402 403 7.639162 CTACCCTAGCAATATTTTAGACACG 57.361 40.000 5.65 0.00 0.00 4.49
403 404 6.229936 ACCCTAGCAATATTTTAGACACGA 57.770 37.500 0.00 0.00 0.00 4.35
404 405 6.047231 ACCCTAGCAATATTTTAGACACGAC 58.953 40.000 0.00 0.00 0.00 4.34
405 406 5.465724 CCCTAGCAATATTTTAGACACGACC 59.534 44.000 0.00 0.00 0.00 4.79
406 407 6.046593 CCTAGCAATATTTTAGACACGACCA 58.953 40.000 0.00 0.00 0.00 4.02
407 408 6.537301 CCTAGCAATATTTTAGACACGACCAA 59.463 38.462 0.00 0.00 0.00 3.67
408 409 6.811253 AGCAATATTTTAGACACGACCAAA 57.189 33.333 0.00 0.00 0.00 3.28
409 410 7.209471 AGCAATATTTTAGACACGACCAAAA 57.791 32.000 0.00 0.00 0.00 2.44
410 411 7.653647 AGCAATATTTTAGACACGACCAAAAA 58.346 30.769 0.00 0.00 0.00 1.94
411 412 7.593644 AGCAATATTTTAGACACGACCAAAAAC 59.406 33.333 0.00 0.00 0.00 2.43
412 413 7.593644 GCAATATTTTAGACACGACCAAAAACT 59.406 33.333 0.00 0.00 0.00 2.66
413 414 9.458374 CAATATTTTAGACACGACCAAAAACTT 57.542 29.630 0.00 0.00 0.00 2.66
417 418 8.441312 TTTTAGACACGACCAAAAACTTATCT 57.559 30.769 0.00 0.00 0.00 1.98
418 419 8.441312 TTTAGACACGACCAAAAACTTATCTT 57.559 30.769 0.00 0.00 0.00 2.40
419 420 6.937436 AGACACGACCAAAAACTTATCTTT 57.063 33.333 0.00 0.00 0.00 2.52
420 421 6.725246 AGACACGACCAAAAACTTATCTTTG 58.275 36.000 0.00 0.00 33.25 2.77
421 422 6.317893 AGACACGACCAAAAACTTATCTTTGT 59.682 34.615 0.00 0.00 31.84 2.83
422 423 6.859017 ACACGACCAAAAACTTATCTTTGTT 58.141 32.000 0.00 0.00 31.84 2.83
423 424 7.317390 ACACGACCAAAAACTTATCTTTGTTT 58.683 30.769 0.00 0.00 37.92 2.83
424 425 7.274686 ACACGACCAAAAACTTATCTTTGTTTG 59.725 33.333 0.00 0.00 36.63 2.93
425 426 6.754675 ACGACCAAAAACTTATCTTTGTTTGG 59.245 34.615 10.60 10.60 46.71 3.28
426 427 6.975772 CGACCAAAAACTTATCTTTGTTTGGA 59.024 34.615 17.40 0.00 45.04 3.53
427 428 7.651704 CGACCAAAAACTTATCTTTGTTTGGAT 59.348 33.333 17.40 4.47 45.04 3.41
428 429 8.887036 ACCAAAAACTTATCTTTGTTTGGATC 57.113 30.769 17.40 0.00 45.04 3.36
429 430 8.482128 ACCAAAAACTTATCTTTGTTTGGATCA 58.518 29.630 17.40 0.00 45.04 2.92
430 431 9.492973 CCAAAAACTTATCTTTGTTTGGATCAT 57.507 29.630 7.09 0.00 45.04 2.45
433 434 9.696917 AAAACTTATCTTTGTTTGGATCATGAC 57.303 29.630 0.00 0.00 36.63 3.06
434 435 7.396540 ACTTATCTTTGTTTGGATCATGACC 57.603 36.000 0.00 2.22 0.00 4.02
435 436 6.947733 ACTTATCTTTGTTTGGATCATGACCA 59.052 34.615 11.56 11.56 35.47 4.02
436 437 7.451255 ACTTATCTTTGTTTGGATCATGACCAA 59.549 33.333 19.56 19.56 44.27 3.67
437 438 6.862469 ATCTTTGTTTGGATCATGACCAAT 57.138 33.333 22.33 9.50 45.09 3.16
438 439 6.669125 TCTTTGTTTGGATCATGACCAATT 57.331 33.333 22.33 0.00 45.09 2.32
439 440 6.690530 TCTTTGTTTGGATCATGACCAATTC 58.309 36.000 22.33 18.92 45.09 2.17
440 441 6.494491 TCTTTGTTTGGATCATGACCAATTCT 59.506 34.615 22.33 0.00 45.09 2.40
441 442 5.902613 TGTTTGGATCATGACCAATTCTC 57.097 39.130 22.33 15.77 45.09 2.87
442 443 4.706476 TGTTTGGATCATGACCAATTCTCC 59.294 41.667 22.33 14.01 45.09 3.71
443 444 4.868172 TTGGATCATGACCAATTCTCCT 57.132 40.909 19.56 0.00 41.64 3.69
444 445 4.868172 TGGATCATGACCAATTCTCCTT 57.132 40.909 12.79 0.00 34.25 3.36
445 446 4.529897 TGGATCATGACCAATTCTCCTTG 58.470 43.478 12.79 0.00 34.25 3.61
451 452 3.677963 CCAATTCTCCTTGGCAGGT 57.322 52.632 0.00 0.00 41.69 4.00
452 453 1.467920 CCAATTCTCCTTGGCAGGTC 58.532 55.000 0.00 0.00 41.69 3.85
453 454 1.272092 CCAATTCTCCTTGGCAGGTCA 60.272 52.381 0.00 0.00 41.69 4.02
454 455 2.517959 CAATTCTCCTTGGCAGGTCAA 58.482 47.619 0.00 0.00 41.69 3.18
455 456 3.094572 CAATTCTCCTTGGCAGGTCAAT 58.905 45.455 0.00 0.00 41.69 2.57
456 457 2.205022 TTCTCCTTGGCAGGTCAATG 57.795 50.000 0.00 0.00 41.69 2.82
457 458 0.322816 TCTCCTTGGCAGGTCAATGC 60.323 55.000 0.00 0.00 45.74 3.56
458 459 0.323178 CTCCTTGGCAGGTCAATGCT 60.323 55.000 0.00 0.00 45.75 3.79
459 460 0.322816 TCCTTGGCAGGTCAATGCTC 60.323 55.000 0.00 0.00 45.75 4.26
460 461 1.318158 CCTTGGCAGGTCAATGCTCC 61.318 60.000 0.00 0.00 45.75 4.70
461 462 1.304381 TTGGCAGGTCAATGCTCCC 60.304 57.895 0.00 0.00 45.75 4.30
462 463 1.792757 TTGGCAGGTCAATGCTCCCT 61.793 55.000 0.00 0.00 45.75 4.20
463 464 1.000396 GGCAGGTCAATGCTCCCTT 60.000 57.895 0.00 0.00 45.75 3.95
464 465 1.318158 GGCAGGTCAATGCTCCCTTG 61.318 60.000 0.00 0.00 45.75 3.61
465 466 1.941999 GCAGGTCAATGCTCCCTTGC 61.942 60.000 0.00 0.00 43.07 4.01
466 467 1.000396 AGGTCAATGCTCCCTTGCC 60.000 57.895 0.00 0.00 0.00 4.52
467 468 2.054453 GGTCAATGCTCCCTTGCCC 61.054 63.158 0.00 0.00 0.00 5.36
468 469 1.304381 GTCAATGCTCCCTTGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
469 470 1.304381 TCAATGCTCCCTTGCCCAC 60.304 57.895 0.00 0.00 0.00 4.61
470 471 1.304713 CAATGCTCCCTTGCCCACT 60.305 57.895 0.00 0.00 0.00 4.00
471 472 1.000396 AATGCTCCCTTGCCCACTC 60.000 57.895 0.00 0.00 0.00 3.51
472 473 1.504275 AATGCTCCCTTGCCCACTCT 61.504 55.000 0.00 0.00 0.00 3.24
473 474 0.621571 ATGCTCCCTTGCCCACTCTA 60.622 55.000 0.00 0.00 0.00 2.43
474 475 1.267574 TGCTCCCTTGCCCACTCTAG 61.268 60.000 0.00 0.00 0.00 2.43
475 476 1.268283 GCTCCCTTGCCCACTCTAGT 61.268 60.000 0.00 0.00 0.00 2.57
476 477 1.280457 CTCCCTTGCCCACTCTAGTT 58.720 55.000 0.00 0.00 0.00 2.24
477 478 1.208293 CTCCCTTGCCCACTCTAGTTC 59.792 57.143 0.00 0.00 0.00 3.01
478 479 0.984230 CCCTTGCCCACTCTAGTTCA 59.016 55.000 0.00 0.00 0.00 3.18
479 480 1.351017 CCCTTGCCCACTCTAGTTCAA 59.649 52.381 0.00 0.00 0.00 2.69
480 481 2.025887 CCCTTGCCCACTCTAGTTCAAT 60.026 50.000 0.00 0.00 0.00 2.57
481 482 3.012518 CCTTGCCCACTCTAGTTCAATG 58.987 50.000 0.00 0.00 0.00 2.82
482 483 3.560025 CCTTGCCCACTCTAGTTCAATGT 60.560 47.826 0.00 0.00 0.00 2.71
483 484 3.334583 TGCCCACTCTAGTTCAATGTC 57.665 47.619 0.00 0.00 0.00 3.06
484 485 2.906389 TGCCCACTCTAGTTCAATGTCT 59.094 45.455 0.00 0.00 0.00 3.41
485 486 4.093743 TGCCCACTCTAGTTCAATGTCTA 58.906 43.478 0.00 0.00 0.00 2.59
486 487 4.530553 TGCCCACTCTAGTTCAATGTCTAA 59.469 41.667 0.00 0.00 0.00 2.10
487 488 5.189736 TGCCCACTCTAGTTCAATGTCTAAT 59.810 40.000 0.00 0.00 0.00 1.73
488 489 5.525378 GCCCACTCTAGTTCAATGTCTAATG 59.475 44.000 0.00 0.00 0.00 1.90
489 490 6.644347 CCCACTCTAGTTCAATGTCTAATGT 58.356 40.000 0.00 0.00 0.00 2.71
490 491 7.106239 CCCACTCTAGTTCAATGTCTAATGTT 58.894 38.462 0.00 0.00 0.00 2.71
491 492 8.258007 CCCACTCTAGTTCAATGTCTAATGTTA 58.742 37.037 0.00 0.00 0.00 2.41
492 493 9.307121 CCACTCTAGTTCAATGTCTAATGTTAG 57.693 37.037 0.00 0.00 0.00 2.34
493 494 8.812329 CACTCTAGTTCAATGTCTAATGTTAGC 58.188 37.037 0.00 0.00 0.00 3.09
494 495 8.531982 ACTCTAGTTCAATGTCTAATGTTAGCA 58.468 33.333 0.00 0.00 0.00 3.49
495 496 8.932945 TCTAGTTCAATGTCTAATGTTAGCAG 57.067 34.615 0.00 0.00 0.00 4.24
496 497 8.749354 TCTAGTTCAATGTCTAATGTTAGCAGA 58.251 33.333 0.00 0.00 0.00 4.26
497 498 9.539825 CTAGTTCAATGTCTAATGTTAGCAGAT 57.460 33.333 0.00 0.00 0.00 2.90
498 499 8.430801 AGTTCAATGTCTAATGTTAGCAGATC 57.569 34.615 0.00 0.00 0.00 2.75
499 500 8.043113 AGTTCAATGTCTAATGTTAGCAGATCA 58.957 33.333 0.00 0.00 0.00 2.92
500 501 8.834465 GTTCAATGTCTAATGTTAGCAGATCAT 58.166 33.333 0.00 0.00 0.00 2.45
501 502 8.374327 TCAATGTCTAATGTTAGCAGATCATG 57.626 34.615 0.00 0.00 0.00 3.07
502 503 7.443272 TCAATGTCTAATGTTAGCAGATCATGG 59.557 37.037 0.00 0.00 0.00 3.66
503 504 5.614308 TGTCTAATGTTAGCAGATCATGGG 58.386 41.667 0.00 0.00 0.00 4.00
504 505 4.453819 GTCTAATGTTAGCAGATCATGGGC 59.546 45.833 0.00 0.00 0.00 5.36
505 506 2.283145 ATGTTAGCAGATCATGGGCC 57.717 50.000 0.00 0.00 0.00 5.80
506 507 0.918258 TGTTAGCAGATCATGGGCCA 59.082 50.000 9.61 9.61 0.00 5.36
507 508 1.134007 TGTTAGCAGATCATGGGCCAG 60.134 52.381 13.78 4.37 0.00 4.85
508 509 1.133976 GTTAGCAGATCATGGGCCAGT 60.134 52.381 13.78 0.00 0.00 4.00
509 510 2.101640 TAGCAGATCATGGGCCAGTA 57.898 50.000 13.78 2.03 0.00 2.74
510 511 1.216064 AGCAGATCATGGGCCAGTAA 58.784 50.000 13.78 0.00 0.00 2.24
511 512 1.565759 AGCAGATCATGGGCCAGTAAA 59.434 47.619 13.78 0.00 0.00 2.01
512 513 2.025037 AGCAGATCATGGGCCAGTAAAA 60.025 45.455 13.78 0.00 0.00 1.52
513 514 2.099756 GCAGATCATGGGCCAGTAAAAC 59.900 50.000 13.78 1.16 0.00 2.43
514 515 2.689983 CAGATCATGGGCCAGTAAAACC 59.310 50.000 13.78 0.00 0.00 3.27
515 516 2.582636 AGATCATGGGCCAGTAAAACCT 59.417 45.455 13.78 0.00 0.00 3.50
516 517 2.507407 TCATGGGCCAGTAAAACCTC 57.493 50.000 13.78 0.00 0.00 3.85
517 518 1.707989 TCATGGGCCAGTAAAACCTCA 59.292 47.619 13.78 0.00 0.00 3.86
518 519 1.818674 CATGGGCCAGTAAAACCTCAC 59.181 52.381 13.78 0.00 0.00 3.51
519 520 0.111639 TGGGCCAGTAAAACCTCACC 59.888 55.000 0.00 0.00 0.00 4.02
520 521 0.611062 GGGCCAGTAAAACCTCACCC 60.611 60.000 4.39 0.00 0.00 4.61
521 522 0.111639 GGCCAGTAAAACCTCACCCA 59.888 55.000 0.00 0.00 0.00 4.51
522 523 1.479757 GGCCAGTAAAACCTCACCCAA 60.480 52.381 0.00 0.00 0.00 4.12
523 524 2.312390 GCCAGTAAAACCTCACCCAAA 58.688 47.619 0.00 0.00 0.00 3.28
524 525 2.696187 GCCAGTAAAACCTCACCCAAAA 59.304 45.455 0.00 0.00 0.00 2.44
525 526 3.323691 GCCAGTAAAACCTCACCCAAAAT 59.676 43.478 0.00 0.00 0.00 1.82
526 527 4.202315 GCCAGTAAAACCTCACCCAAAATT 60.202 41.667 0.00 0.00 0.00 1.82
527 528 5.686387 GCCAGTAAAACCTCACCCAAAATTT 60.686 40.000 0.00 0.00 0.00 1.82
528 529 6.353323 CCAGTAAAACCTCACCCAAAATTTT 58.647 36.000 0.00 0.00 0.00 1.82
529 530 7.501844 CCAGTAAAACCTCACCCAAAATTTTA 58.498 34.615 2.44 0.00 0.00 1.52
530 531 7.988028 CCAGTAAAACCTCACCCAAAATTTTAA 59.012 33.333 2.44 0.00 0.00 1.52
531 532 8.822855 CAGTAAAACCTCACCCAAAATTTTAAC 58.177 33.333 2.44 0.00 0.00 2.01
532 533 8.764558 AGTAAAACCTCACCCAAAATTTTAACT 58.235 29.630 2.44 0.00 0.00 2.24
535 536 7.907841 AACCTCACCCAAAATTTTAACTAGT 57.092 32.000 2.44 0.00 0.00 2.57
536 537 7.520451 ACCTCACCCAAAATTTTAACTAGTC 57.480 36.000 2.44 0.00 0.00 2.59
537 538 7.064229 ACCTCACCCAAAATTTTAACTAGTCA 58.936 34.615 2.44 0.00 0.00 3.41
538 539 7.562088 ACCTCACCCAAAATTTTAACTAGTCAA 59.438 33.333 2.44 0.00 0.00 3.18
539 540 8.417884 CCTCACCCAAAATTTTAACTAGTCAAA 58.582 33.333 2.44 0.00 0.00 2.69
540 541 9.981114 CTCACCCAAAATTTTAACTAGTCAAAT 57.019 29.630 2.44 1.45 0.00 2.32
601 606 4.693566 CGAGATAAAGGCTAACACCAAACA 59.306 41.667 0.00 0.00 0.00 2.83
630 635 2.433838 CTGCTCGCCCACTGACAG 60.434 66.667 0.00 0.00 0.00 3.51
642 647 1.120530 ACTGACAGAACCCAACGAGT 58.879 50.000 10.08 0.00 0.00 4.18
650 655 3.988517 CAGAACCCAACGAGTAGAGAAAC 59.011 47.826 0.00 0.00 0.00 2.78
651 656 3.006644 AGAACCCAACGAGTAGAGAAACC 59.993 47.826 0.00 0.00 0.00 3.27
652 657 2.322658 ACCCAACGAGTAGAGAAACCA 58.677 47.619 0.00 0.00 0.00 3.67
653 658 2.701951 ACCCAACGAGTAGAGAAACCAA 59.298 45.455 0.00 0.00 0.00 3.67
654 659 3.135167 ACCCAACGAGTAGAGAAACCAAA 59.865 43.478 0.00 0.00 0.00 3.28
663 668 6.571731 CGAGTAGAGAAACCAAACCATGAGTA 60.572 42.308 0.00 0.00 0.00 2.59
685 690 1.104577 TGGACGCTGTTTCCCAAACC 61.105 55.000 0.00 0.00 40.67 3.27
695 700 1.043673 TTCCCAAACCCAAACCCACG 61.044 55.000 0.00 0.00 0.00 4.94
696 701 2.419620 CCAAACCCAAACCCACGC 59.580 61.111 0.00 0.00 0.00 5.34
697 702 2.427245 CCAAACCCAAACCCACGCA 61.427 57.895 0.00 0.00 0.00 5.24
731 736 3.947196 GGCACCAATTCATCATCTGTACA 59.053 43.478 0.00 0.00 0.00 2.90
733 738 5.068198 GGCACCAATTCATCATCTGTACAAT 59.932 40.000 0.00 0.00 0.00 2.71
734 739 6.204359 GCACCAATTCATCATCTGTACAATC 58.796 40.000 0.00 0.00 0.00 2.67
735 740 6.732154 CACCAATTCATCATCTGTACAATCC 58.268 40.000 0.00 0.00 0.00 3.01
866 886 4.223032 CCTCCCCACGCTTCAGTATATAAT 59.777 45.833 0.00 0.00 0.00 1.28
896 916 1.152387 ATCCACCATCCCAACCCCAA 61.152 55.000 0.00 0.00 0.00 4.12
897 917 1.609210 CCACCATCCCAACCCCAAC 60.609 63.158 0.00 0.00 0.00 3.77
898 918 1.609210 CACCATCCCAACCCCAACC 60.609 63.158 0.00 0.00 0.00 3.77
899 919 2.038813 CCATCCCAACCCCAACCC 59.961 66.667 0.00 0.00 0.00 4.11
900 920 2.038813 CATCCCAACCCCAACCCC 59.961 66.667 0.00 0.00 0.00 4.95
901 921 2.455532 ATCCCAACCCCAACCCCA 60.456 61.111 0.00 0.00 0.00 4.96
913 933 0.114168 CAACCCCAACCCCATCAAGA 59.886 55.000 0.00 0.00 0.00 3.02
936 956 2.351641 GCACACAGACACAGAGAGAGAG 60.352 54.545 0.00 0.00 0.00 3.20
937 957 3.145286 CACACAGACACAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
938 958 3.758023 CACACAGACACAGAGAGAGAGAT 59.242 47.826 0.00 0.00 0.00 2.75
939 959 4.940654 CACACAGACACAGAGAGAGAGATA 59.059 45.833 0.00 0.00 0.00 1.98
940 960 5.065090 CACACAGACACAGAGAGAGAGATAG 59.935 48.000 0.00 0.00 0.00 2.08
981 1001 0.169009 GATTTTGGGAGACAGTGCGC 59.831 55.000 0.00 0.00 0.00 6.09
997 1017 2.024588 GCTTGTGTGTGCGTGTGG 59.975 61.111 0.00 0.00 0.00 4.17
1458 1490 1.058438 CGTCGAGTCCTACGTCGTG 59.942 63.158 8.47 0.00 37.47 4.35
1597 1629 1.664321 GCGGCGGGACTAGAAGAGAA 61.664 60.000 9.78 0.00 0.00 2.87
1601 1633 2.645802 GCGGGACTAGAAGAGAAGAGA 58.354 52.381 0.00 0.00 0.00 3.10
1602 1634 2.356695 GCGGGACTAGAAGAGAAGAGAC 59.643 54.545 0.00 0.00 0.00 3.36
1608 1640 4.178540 ACTAGAAGAGAAGAGACGAGACG 58.821 47.826 0.00 0.00 0.00 4.18
1612 1644 2.613691 AGAGAAGAGACGAGACGAGAC 58.386 52.381 0.00 0.00 0.00 3.36
1616 1648 0.458889 AGAGACGAGACGAGACGAGG 60.459 60.000 0.00 0.00 0.00 4.63
1619 1651 3.878519 CGAGACGAGACGAGGGCC 61.879 72.222 0.00 0.00 0.00 5.80
1776 1821 3.844577 TTTTCCGTTGGTGTCGAAAAA 57.155 38.095 0.00 0.00 0.00 1.94
1816 1861 2.427506 CAGCCTCCTTTCCTTGTGTAC 58.572 52.381 0.00 0.00 0.00 2.90
1817 1862 2.039084 CAGCCTCCTTTCCTTGTGTACT 59.961 50.000 0.00 0.00 0.00 2.73
1818 1863 2.303311 AGCCTCCTTTCCTTGTGTACTC 59.697 50.000 0.00 0.00 0.00 2.59
1819 1864 2.038557 GCCTCCTTTCCTTGTGTACTCA 59.961 50.000 0.00 0.00 0.00 3.41
1837 1882 8.483218 GTGTACTCATATCATCATCTTTGTTCG 58.517 37.037 0.00 0.00 0.00 3.95
1843 1888 8.820933 TCATATCATCATCTTTGTTCGTTTCTC 58.179 33.333 0.00 0.00 0.00 2.87
1862 1907 2.339712 GGCTGCCGTTTGTGCAAT 59.660 55.556 1.35 0.00 38.46 3.56
1924 1970 1.351350 GGGGAAAACTCAGGTAGCTGT 59.649 52.381 20.76 1.61 0.00 4.40
1925 1971 2.224793 GGGGAAAACTCAGGTAGCTGTT 60.225 50.000 20.76 8.40 0.00 3.16
1936 1982 1.228124 TAGCTGTTGCCGGTTGCTT 60.228 52.632 1.90 0.00 42.00 3.91
1950 1996 2.420628 TTGCTTTCAACAAGATGGCG 57.579 45.000 0.00 0.00 0.00 5.69
1954 2000 1.536766 CTTTCAACAAGATGGCGCTGA 59.463 47.619 7.64 0.00 0.00 4.26
1958 2004 2.168313 TCAACAAGATGGCGCTGAGATA 59.832 45.455 7.64 0.00 0.00 1.98
1962 2008 4.960938 ACAAGATGGCGCTGAGATAATAA 58.039 39.130 7.64 0.00 0.00 1.40
1986 2032 8.460831 AATTTTACATTTCATCTTTGTACCGC 57.539 30.769 0.00 0.00 0.00 5.68
1988 2034 6.561737 TTACATTTCATCTTTGTACCGCAA 57.438 33.333 0.00 0.00 34.87 4.85
2001 2051 8.731605 TCTTTGTACCGCAAAATACAATAATGA 58.268 29.630 0.00 0.00 45.35 2.57
2003 2053 8.848948 TTGTACCGCAAAATACAATAATGATG 57.151 30.769 0.00 0.00 36.59 3.07
2023 2073 2.679336 TGTCATTCCAATCGATGTGCAG 59.321 45.455 0.00 0.00 0.00 4.41
2026 2076 2.768253 TTCCAATCGATGTGCAGACT 57.232 45.000 0.00 0.00 0.00 3.24
2049 2104 0.676736 GGCTGGGAACTAGATCCTCG 59.323 60.000 17.71 10.45 39.57 4.63
2053 2108 2.885894 CTGGGAACTAGATCCTCGGTAC 59.114 54.545 17.71 1.93 39.57 3.34
2060 2115 6.716173 GGAACTAGATCCTCGGTACTAATTCT 59.284 42.308 11.67 0.00 36.50 2.40
2066 2121 5.063017 TCCTCGGTACTAATTCTCTCCAT 57.937 43.478 0.00 0.00 0.00 3.41
2070 2125 6.490721 CCTCGGTACTAATTCTCTCCATAACT 59.509 42.308 0.00 0.00 0.00 2.24
2096 2152 6.966435 GAGAATCCTCTGTTCTTTTCTCAG 57.034 41.667 0.00 0.00 39.10 3.35
2097 2153 5.244755 AGAATCCTCTGTTCTTTTCTCAGC 58.755 41.667 0.00 0.00 32.17 4.26
2098 2154 3.032017 TCCTCTGTTCTTTTCTCAGCG 57.968 47.619 0.00 0.00 0.00 5.18
2099 2155 2.365617 TCCTCTGTTCTTTTCTCAGCGT 59.634 45.455 0.00 0.00 0.00 5.07
2100 2156 2.734079 CCTCTGTTCTTTTCTCAGCGTC 59.266 50.000 0.00 0.00 0.00 5.19
2101 2157 2.734079 CTCTGTTCTTTTCTCAGCGTCC 59.266 50.000 0.00 0.00 0.00 4.79
2104 2160 2.158957 TGTTCTTTTCTCAGCGTCCTGT 60.159 45.455 0.00 0.00 40.09 4.00
2105 2161 2.154854 TCTTTTCTCAGCGTCCTGTG 57.845 50.000 0.00 0.00 40.09 3.66
2106 2162 0.514691 CTTTTCTCAGCGTCCTGTGC 59.485 55.000 0.00 0.00 40.09 4.57
2107 2163 0.884704 TTTTCTCAGCGTCCTGTGCC 60.885 55.000 0.00 0.00 40.09 5.01
2108 2164 2.038814 TTTCTCAGCGTCCTGTGCCA 62.039 55.000 0.00 0.00 40.09 4.92
2109 2165 2.433838 CTCAGCGTCCTGTGCCAG 60.434 66.667 0.00 0.00 40.09 4.85
2118 2174 3.138798 CTGTGCCAGGATGCCAGC 61.139 66.667 0.00 0.00 31.97 4.85
2119 2175 3.931190 CTGTGCCAGGATGCCAGCA 62.931 63.158 0.00 0.00 33.69 4.41
2120 2176 3.138798 GTGCCAGGATGCCAGCAG 61.139 66.667 0.00 0.00 36.11 4.24
2130 2186 4.453093 GCCAGCAGCATCCTAGAC 57.547 61.111 0.00 0.00 42.97 2.59
2131 2187 1.828768 GCCAGCAGCATCCTAGACT 59.171 57.895 0.00 0.00 42.97 3.24
2146 2202 5.072741 TCCTAGACTGAAATTGCAAAAGCT 58.927 37.500 1.71 4.13 0.00 3.74
2161 2223 4.690748 GCAAAAGCTTCCCCATTTTAGAAC 59.309 41.667 0.00 0.00 0.00 3.01
2162 2224 5.511373 GCAAAAGCTTCCCCATTTTAGAACT 60.511 40.000 0.00 0.00 0.00 3.01
2182 2244 8.293699 AGAACTTTAGGCGATTCCAAATAATT 57.706 30.769 0.00 0.00 37.29 1.40
2185 2247 5.682943 TTAGGCGATTCCAAATAATTCCG 57.317 39.130 0.00 0.00 37.29 4.30
2186 2248 2.884639 AGGCGATTCCAAATAATTCCGG 59.115 45.455 0.00 0.00 37.29 5.14
2190 2258 3.255642 CGATTCCAAATAATTCCGGGCAT 59.744 43.478 0.00 0.00 0.00 4.40
2207 2275 4.083324 CGGGCATGATCAACGCTAATTAAT 60.083 41.667 17.19 0.00 0.00 1.40
2209 2277 6.348132 CGGGCATGATCAACGCTAATTAATTA 60.348 38.462 17.19 7.66 0.00 1.40
2210 2278 7.367285 GGGCATGATCAACGCTAATTAATTAA 58.633 34.615 17.19 0.00 0.00 1.40
2211 2279 7.865385 GGGCATGATCAACGCTAATTAATTAAA 59.135 33.333 17.19 0.00 0.00 1.52
2212 2280 9.410556 GGCATGATCAACGCTAATTAATTAAAT 57.589 29.630 17.19 0.00 0.00 1.40
2222 2290 8.273557 ACGCTAATTAATTAAATCGTACTGCTG 58.726 33.333 19.43 11.07 0.00 4.41
2229 2297 1.927895 AATCGTACTGCTGCTGCTAC 58.072 50.000 17.00 10.46 40.48 3.58
2233 2301 1.086634 GTACTGCTGCTGCTACTGGC 61.087 60.000 17.00 0.00 40.48 4.85
2256 2324 5.545658 TGAGCGAATTTGACCAGATTAAC 57.454 39.130 0.00 0.00 0.00 2.01
2266 2334 4.006989 TGACCAGATTAACGGAACCAATG 58.993 43.478 0.00 0.00 0.00 2.82
2286 2354 2.951642 TGAGAAGAGTGGTTGCAAAAGG 59.048 45.455 0.00 0.00 0.00 3.11
2298 2366 2.115266 AAAAGGAGTGGCCACCGG 59.885 61.111 32.29 0.00 40.02 5.28
2341 2413 3.127030 GCGCCACTTATAAAAGAGCAAGT 59.873 43.478 0.00 0.00 36.17 3.16
2377 2461 4.142038 ACAAGTCGGTCCTTAAAGCAAAT 58.858 39.130 0.00 0.00 0.00 2.32
2379 2463 3.000727 AGTCGGTCCTTAAAGCAAATCG 58.999 45.455 0.00 0.00 0.00 3.34
2471 2559 1.566231 AGCTAATTGGGTGGCTAAGCT 59.434 47.619 0.00 0.00 34.15 3.74
2491 2579 2.044806 GCTCTGTGGGGTCACTGTGT 62.045 60.000 7.79 0.00 43.94 3.72
2542 2632 9.801873 TTCAACACTTTATTTTTCAGAAAGGAG 57.198 29.630 0.00 0.00 35.02 3.69
2546 2636 7.014326 ACACTTTATTTTTCAGAAAGGAGGGAC 59.986 37.037 0.00 0.00 35.02 4.46
2549 2639 4.519906 TTTTTCAGAAAGGAGGGACAGT 57.480 40.909 0.00 0.00 0.00 3.55
2550 2640 5.640158 TTTTTCAGAAAGGAGGGACAGTA 57.360 39.130 0.00 0.00 0.00 2.74
2551 2641 4.891992 TTTCAGAAAGGAGGGACAGTAG 57.108 45.455 0.00 0.00 0.00 2.57
2553 2643 3.432378 TCAGAAAGGAGGGACAGTAGAC 58.568 50.000 0.00 0.00 0.00 2.59
2554 2644 3.165875 CAGAAAGGAGGGACAGTAGACA 58.834 50.000 0.00 0.00 0.00 3.41
2556 2646 3.076182 AGAAAGGAGGGACAGTAGACAGA 59.924 47.826 0.00 0.00 0.00 3.41
2557 2647 2.517998 AGGAGGGACAGTAGACAGAC 57.482 55.000 0.00 0.00 0.00 3.51
2558 2648 1.096416 GGAGGGACAGTAGACAGACG 58.904 60.000 0.00 0.00 0.00 4.18
2561 2651 1.075050 AGGGACAGTAGACAGACGGAA 59.925 52.381 0.00 0.00 0.00 4.30
2562 2652 1.473278 GGGACAGTAGACAGACGGAAG 59.527 57.143 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.066380 TCAAATATCCGCATCCACATCG 58.934 45.455 0.00 0.00 0.00 3.84
1 2 3.438087 CCTCAAATATCCGCATCCACATC 59.562 47.826 0.00 0.00 0.00 3.06
2 3 3.415212 CCTCAAATATCCGCATCCACAT 58.585 45.455 0.00 0.00 0.00 3.21
3 4 2.487086 CCCTCAAATATCCGCATCCACA 60.487 50.000 0.00 0.00 0.00 4.17
4 5 2.154462 CCCTCAAATATCCGCATCCAC 58.846 52.381 0.00 0.00 0.00 4.02
5 6 1.073763 CCCCTCAAATATCCGCATCCA 59.926 52.381 0.00 0.00 0.00 3.41
6 7 1.073923 ACCCCTCAAATATCCGCATCC 59.926 52.381 0.00 0.00 0.00 3.51
7 8 2.568623 ACCCCTCAAATATCCGCATC 57.431 50.000 0.00 0.00 0.00 3.91
8 9 3.497942 GGTTACCCCTCAAATATCCGCAT 60.498 47.826 0.00 0.00 0.00 4.73
9 10 2.158726 GGTTACCCCTCAAATATCCGCA 60.159 50.000 0.00 0.00 0.00 5.69
10 11 2.501261 GGTTACCCCTCAAATATCCGC 58.499 52.381 0.00 0.00 0.00 5.54
11 12 2.549349 CCGGTTACCCCTCAAATATCCG 60.549 54.545 0.00 0.00 33.08 4.18
12 13 2.224695 CCCGGTTACCCCTCAAATATCC 60.225 54.545 0.00 0.00 0.00 2.59
13 14 2.812983 GCCCGGTTACCCCTCAAATATC 60.813 54.545 0.00 0.00 0.00 1.63
14 15 1.144298 GCCCGGTTACCCCTCAAATAT 59.856 52.381 0.00 0.00 0.00 1.28
15 16 0.547553 GCCCGGTTACCCCTCAAATA 59.452 55.000 0.00 0.00 0.00 1.40
16 17 1.305287 GCCCGGTTACCCCTCAAAT 59.695 57.895 0.00 0.00 0.00 2.32
17 18 2.758434 GCCCGGTTACCCCTCAAA 59.242 61.111 0.00 0.00 0.00 2.69
18 19 3.708544 CGCCCGGTTACCCCTCAA 61.709 66.667 0.00 0.00 0.00 3.02
35 36 1.970917 CTCAAACATCCGCGGACAGC 61.971 60.000 33.75 0.00 43.95 4.40
36 37 1.361668 CCTCAAACATCCGCGGACAG 61.362 60.000 33.75 27.69 0.00 3.51
37 38 1.375396 CCTCAAACATCCGCGGACA 60.375 57.895 33.75 10.24 0.00 4.02
38 39 1.079405 TCCTCAAACATCCGCGGAC 60.079 57.895 33.75 0.00 0.00 4.79
39 40 1.218047 CTCCTCAAACATCCGCGGA 59.782 57.895 33.12 33.12 0.00 5.54
40 41 1.079127 ACTCCTCAAACATCCGCGG 60.079 57.895 22.12 22.12 0.00 6.46
41 42 0.389817 TCACTCCTCAAACATCCGCG 60.390 55.000 0.00 0.00 0.00 6.46
42 43 1.066858 TCTCACTCCTCAAACATCCGC 60.067 52.381 0.00 0.00 0.00 5.54
43 44 3.533606 ATCTCACTCCTCAAACATCCG 57.466 47.619 0.00 0.00 0.00 4.18
44 45 5.248640 TCAAATCTCACTCCTCAAACATCC 58.751 41.667 0.00 0.00 0.00 3.51
45 46 6.596888 TCATCAAATCTCACTCCTCAAACATC 59.403 38.462 0.00 0.00 0.00 3.06
46 47 6.479006 TCATCAAATCTCACTCCTCAAACAT 58.521 36.000 0.00 0.00 0.00 2.71
47 48 5.868454 TCATCAAATCTCACTCCTCAAACA 58.132 37.500 0.00 0.00 0.00 2.83
48 49 5.936956 ACTCATCAAATCTCACTCCTCAAAC 59.063 40.000 0.00 0.00 0.00 2.93
49 50 6.013898 AGACTCATCAAATCTCACTCCTCAAA 60.014 38.462 0.00 0.00 0.00 2.69
50 51 5.483231 AGACTCATCAAATCTCACTCCTCAA 59.517 40.000 0.00 0.00 0.00 3.02
51 52 5.022122 AGACTCATCAAATCTCACTCCTCA 58.978 41.667 0.00 0.00 0.00 3.86
52 53 5.350633 CAGACTCATCAAATCTCACTCCTC 58.649 45.833 0.00 0.00 0.00 3.71
53 54 4.161942 CCAGACTCATCAAATCTCACTCCT 59.838 45.833 0.00 0.00 0.00 3.69
54 55 4.161189 TCCAGACTCATCAAATCTCACTCC 59.839 45.833 0.00 0.00 0.00 3.85
55 56 5.336150 TCCAGACTCATCAAATCTCACTC 57.664 43.478 0.00 0.00 0.00 3.51
56 57 5.189342 ACATCCAGACTCATCAAATCTCACT 59.811 40.000 0.00 0.00 0.00 3.41
57 58 5.426504 ACATCCAGACTCATCAAATCTCAC 58.573 41.667 0.00 0.00 0.00 3.51
58 59 5.688814 ACATCCAGACTCATCAAATCTCA 57.311 39.130 0.00 0.00 0.00 3.27
59 60 7.048629 TCTACATCCAGACTCATCAAATCTC 57.951 40.000 0.00 0.00 0.00 2.75
60 61 7.443477 CATCTACATCCAGACTCATCAAATCT 58.557 38.462 0.00 0.00 0.00 2.40
61 62 6.147492 GCATCTACATCCAGACTCATCAAATC 59.853 42.308 0.00 0.00 0.00 2.17
62 63 5.996513 GCATCTACATCCAGACTCATCAAAT 59.003 40.000 0.00 0.00 0.00 2.32
63 64 5.363101 GCATCTACATCCAGACTCATCAAA 58.637 41.667 0.00 0.00 0.00 2.69
64 65 4.202295 GGCATCTACATCCAGACTCATCAA 60.202 45.833 0.00 0.00 0.00 2.57
65 66 3.323115 GGCATCTACATCCAGACTCATCA 59.677 47.826 0.00 0.00 0.00 3.07
66 67 3.613671 CGGCATCTACATCCAGACTCATC 60.614 52.174 0.00 0.00 0.00 2.92
67 68 2.298446 CGGCATCTACATCCAGACTCAT 59.702 50.000 0.00 0.00 0.00 2.90
68 69 1.683385 CGGCATCTACATCCAGACTCA 59.317 52.381 0.00 0.00 0.00 3.41
69 70 1.957177 TCGGCATCTACATCCAGACTC 59.043 52.381 0.00 0.00 0.00 3.36
70 71 1.959985 CTCGGCATCTACATCCAGACT 59.040 52.381 0.00 0.00 0.00 3.24
71 72 1.683917 ACTCGGCATCTACATCCAGAC 59.316 52.381 0.00 0.00 0.00 3.51
72 73 2.073252 ACTCGGCATCTACATCCAGA 57.927 50.000 0.00 0.00 0.00 3.86
73 74 4.240888 CATTACTCGGCATCTACATCCAG 58.759 47.826 0.00 0.00 0.00 3.86
74 75 3.641436 ACATTACTCGGCATCTACATCCA 59.359 43.478 0.00 0.00 0.00 3.41
75 76 4.258702 ACATTACTCGGCATCTACATCC 57.741 45.455 0.00 0.00 0.00 3.51
76 77 7.145985 TCTAAACATTACTCGGCATCTACATC 58.854 38.462 0.00 0.00 0.00 3.06
77 78 7.050970 TCTAAACATTACTCGGCATCTACAT 57.949 36.000 0.00 0.00 0.00 2.29
78 79 6.459670 TCTAAACATTACTCGGCATCTACA 57.540 37.500 0.00 0.00 0.00 2.74
79 80 7.948278 AATCTAAACATTACTCGGCATCTAC 57.052 36.000 0.00 0.00 0.00 2.59
81 82 9.640963 GTATAATCTAAACATTACTCGGCATCT 57.359 33.333 0.00 0.00 0.00 2.90
82 83 9.640963 AGTATAATCTAAACATTACTCGGCATC 57.359 33.333 0.00 0.00 0.00 3.91
83 84 9.640963 GAGTATAATCTAAACATTACTCGGCAT 57.359 33.333 0.00 0.00 0.00 4.40
84 85 8.086522 GGAGTATAATCTAAACATTACTCGGCA 58.913 37.037 0.00 0.00 0.00 5.69
85 86 7.544915 GGGAGTATAATCTAAACATTACTCGGC 59.455 40.741 0.00 0.00 0.00 5.54
86 87 8.804204 AGGGAGTATAATCTAAACATTACTCGG 58.196 37.037 0.00 0.00 0.00 4.63
87 88 9.843334 GAGGGAGTATAATCTAAACATTACTCG 57.157 37.037 0.00 0.00 0.00 4.18
89 90 8.804204 CGGAGGGAGTATAATCTAAACATTACT 58.196 37.037 0.00 0.00 0.00 2.24
90 91 8.983307 CGGAGGGAGTATAATCTAAACATTAC 57.017 38.462 0.00 0.00 0.00 1.89
111 112 2.882137 TGCAAAGTAAAAAGGACCGGAG 59.118 45.455 9.46 0.00 0.00 4.63
112 113 2.933573 TGCAAAGTAAAAAGGACCGGA 58.066 42.857 9.46 0.00 0.00 5.14
113 114 3.934457 ATGCAAAGTAAAAAGGACCGG 57.066 42.857 0.00 0.00 0.00 5.28
114 115 7.981142 TCTTATATGCAAAGTAAAAAGGACCG 58.019 34.615 0.00 0.00 0.00 4.79
217 218 7.962918 GCGTCATGACTTTAGTTTTCATATTGT 59.037 33.333 22.95 0.00 0.00 2.71
218 219 7.962373 TGCGTCATGACTTTAGTTTTCATATTG 59.038 33.333 22.95 3.02 0.00 1.90
219 220 8.039603 TGCGTCATGACTTTAGTTTTCATATT 57.960 30.769 22.95 0.00 0.00 1.28
220 221 7.609760 TGCGTCATGACTTTAGTTTTCATAT 57.390 32.000 22.95 0.00 0.00 1.78
221 222 7.549134 AGATGCGTCATGACTTTAGTTTTCATA 59.451 33.333 22.95 0.00 0.00 2.15
222 223 5.940192 TGCGTCATGACTTTAGTTTTCAT 57.060 34.783 22.95 0.00 0.00 2.57
223 224 5.700832 AGATGCGTCATGACTTTAGTTTTCA 59.299 36.000 22.95 7.45 0.00 2.69
224 225 6.170675 AGATGCGTCATGACTTTAGTTTTC 57.829 37.500 22.95 8.71 0.00 2.29
225 226 7.667043 TTAGATGCGTCATGACTTTAGTTTT 57.333 32.000 22.95 4.61 0.00 2.43
226 227 7.334421 ACATTAGATGCGTCATGACTTTAGTTT 59.666 33.333 22.95 5.95 0.00 2.66
227 228 6.818644 ACATTAGATGCGTCATGACTTTAGTT 59.181 34.615 22.95 7.42 0.00 2.24
228 229 6.341316 ACATTAGATGCGTCATGACTTTAGT 58.659 36.000 22.95 8.00 0.00 2.24
229 230 6.834959 ACATTAGATGCGTCATGACTTTAG 57.165 37.500 22.95 9.02 0.00 1.85
230 231 6.593770 ACAACATTAGATGCGTCATGACTTTA 59.406 34.615 22.95 9.76 0.00 1.85
231 232 5.412594 ACAACATTAGATGCGTCATGACTTT 59.587 36.000 22.95 7.92 0.00 2.66
232 233 4.937620 ACAACATTAGATGCGTCATGACTT 59.062 37.500 22.95 8.27 0.00 3.01
233 234 4.507710 ACAACATTAGATGCGTCATGACT 58.492 39.130 22.95 4.97 0.00 3.41
234 235 4.864916 ACAACATTAGATGCGTCATGAC 57.135 40.909 16.21 16.21 0.00 3.06
235 236 4.934602 TCAACAACATTAGATGCGTCATGA 59.065 37.500 8.99 0.00 0.00 3.07
236 237 5.220557 TCAACAACATTAGATGCGTCATG 57.779 39.130 8.99 6.69 0.00 3.07
237 238 6.441093 AATCAACAACATTAGATGCGTCAT 57.559 33.333 8.99 0.00 0.00 3.06
238 239 5.878332 AATCAACAACATTAGATGCGTCA 57.122 34.783 8.99 0.00 0.00 4.35
239 240 6.249260 GTGAAATCAACAACATTAGATGCGTC 59.751 38.462 0.00 0.00 0.00 5.19
240 241 6.086222 GTGAAATCAACAACATTAGATGCGT 58.914 36.000 0.00 0.00 0.00 5.24
241 242 6.085573 TGTGAAATCAACAACATTAGATGCG 58.914 36.000 0.00 0.00 0.00 4.73
242 243 8.470040 AATGTGAAATCAACAACATTAGATGC 57.530 30.769 0.00 0.00 0.00 3.91
243 244 9.850628 AGAATGTGAAATCAACAACATTAGATG 57.149 29.630 0.23 0.00 0.00 2.90
244 245 9.850628 CAGAATGTGAAATCAACAACATTAGAT 57.149 29.630 0.23 0.00 0.00 1.98
245 246 9.065798 TCAGAATGTGAAATCAACAACATTAGA 57.934 29.630 0.23 0.43 37.40 2.10
246 247 9.681692 TTCAGAATGTGAAATCAACAACATTAG 57.318 29.630 0.23 0.00 42.49 1.73
295 296 3.875134 AGACCACGTAAACTTTGACCAAG 59.125 43.478 0.00 0.00 38.64 3.61
296 297 3.623960 CAGACCACGTAAACTTTGACCAA 59.376 43.478 0.00 0.00 0.00 3.67
297 298 3.118702 TCAGACCACGTAAACTTTGACCA 60.119 43.478 0.00 0.00 0.00 4.02
298 299 3.246936 GTCAGACCACGTAAACTTTGACC 59.753 47.826 0.00 0.00 0.00 4.02
299 300 4.117685 AGTCAGACCACGTAAACTTTGAC 58.882 43.478 0.00 0.00 35.22 3.18
300 301 4.395959 AGTCAGACCACGTAAACTTTGA 57.604 40.909 0.00 0.00 0.00 2.69
301 302 4.569162 TGAAGTCAGACCACGTAAACTTTG 59.431 41.667 0.00 0.00 0.00 2.77
302 303 4.761975 TGAAGTCAGACCACGTAAACTTT 58.238 39.130 0.00 0.00 0.00 2.66
303 304 4.395959 TGAAGTCAGACCACGTAAACTT 57.604 40.909 0.00 0.00 0.00 2.66
304 305 4.395959 TTGAAGTCAGACCACGTAAACT 57.604 40.909 0.00 0.00 0.00 2.66
305 306 4.330620 TGTTTGAAGTCAGACCACGTAAAC 59.669 41.667 0.00 3.75 30.73 2.01
306 307 4.505808 TGTTTGAAGTCAGACCACGTAAA 58.494 39.130 0.00 0.00 30.73 2.01
307 308 4.126208 TGTTTGAAGTCAGACCACGTAA 57.874 40.909 0.00 0.00 30.73 3.18
308 309 3.804786 TGTTTGAAGTCAGACCACGTA 57.195 42.857 0.00 0.00 30.73 3.57
309 310 2.684001 TGTTTGAAGTCAGACCACGT 57.316 45.000 0.00 0.00 30.73 4.49
310 311 4.273480 AGATTTGTTTGAAGTCAGACCACG 59.727 41.667 0.00 0.00 30.73 4.94
311 312 5.757850 AGATTTGTTTGAAGTCAGACCAC 57.242 39.130 0.00 0.00 30.73 4.16
312 313 9.739276 ATATAAGATTTGTTTGAAGTCAGACCA 57.261 29.630 0.00 0.00 30.73 4.02
313 314 9.994432 CATATAAGATTTGTTTGAAGTCAGACC 57.006 33.333 0.00 0.00 30.73 3.85
314 315 9.495754 GCATATAAGATTTGTTTGAAGTCAGAC 57.504 33.333 0.00 0.00 0.00 3.51
315 316 8.390354 CGCATATAAGATTTGTTTGAAGTCAGA 58.610 33.333 0.00 0.00 0.00 3.27
316 317 8.390354 TCGCATATAAGATTTGTTTGAAGTCAG 58.610 33.333 0.00 0.00 0.00 3.51
317 318 8.262715 TCGCATATAAGATTTGTTTGAAGTCA 57.737 30.769 0.00 0.00 0.00 3.41
318 319 9.000018 GTTCGCATATAAGATTTGTTTGAAGTC 58.000 33.333 0.00 0.00 0.00 3.01
319 320 8.730680 AGTTCGCATATAAGATTTGTTTGAAGT 58.269 29.630 0.00 0.00 0.00 3.01
329 330 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
330 331 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
331 332 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
332 333 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
333 334 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
334 335 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
335 336 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
336 337 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
337 338 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
338 339 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
339 340 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
340 341 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
341 342 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
342 343 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
343 344 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
344 345 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
345 346 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
346 347 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
347 348 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
348 349 3.632420 ATATACTCCCTCCGGTCCTTT 57.368 47.619 0.00 0.00 0.00 3.11
349 350 3.563915 GCTATATACTCCCTCCGGTCCTT 60.564 52.174 0.00 0.00 0.00 3.36
350 351 2.025131 GCTATATACTCCCTCCGGTCCT 60.025 54.545 0.00 0.00 0.00 3.85
351 352 2.377073 GCTATATACTCCCTCCGGTCC 58.623 57.143 0.00 0.00 0.00 4.46
352 353 2.291411 TGGCTATATACTCCCTCCGGTC 60.291 54.545 0.00 0.00 0.00 4.79
353 354 1.714787 TGGCTATATACTCCCTCCGGT 59.285 52.381 0.00 0.00 0.00 5.28
354 355 2.526888 TGGCTATATACTCCCTCCGG 57.473 55.000 0.00 0.00 0.00 5.14
355 356 4.759782 CATTTGGCTATATACTCCCTCCG 58.240 47.826 0.00 0.00 0.00 4.63
356 357 4.518249 GCATTTGGCTATATACTCCCTCC 58.482 47.826 0.00 0.00 40.25 4.30
378 379 7.381678 GTCGTGTCTAAAATATTGCTAGGGTAG 59.618 40.741 0.00 0.00 0.00 3.18
379 380 7.205297 GTCGTGTCTAAAATATTGCTAGGGTA 58.795 38.462 0.00 0.00 0.00 3.69
380 381 6.047231 GTCGTGTCTAAAATATTGCTAGGGT 58.953 40.000 0.00 0.00 0.00 4.34
381 382 5.465724 GGTCGTGTCTAAAATATTGCTAGGG 59.534 44.000 0.00 0.00 0.00 3.53
382 383 6.046593 TGGTCGTGTCTAAAATATTGCTAGG 58.953 40.000 0.00 0.00 0.00 3.02
383 384 7.534085 TTGGTCGTGTCTAAAATATTGCTAG 57.466 36.000 0.00 0.00 0.00 3.42
384 385 7.908827 TTTGGTCGTGTCTAAAATATTGCTA 57.091 32.000 0.00 0.00 0.00 3.49
385 386 6.811253 TTTGGTCGTGTCTAAAATATTGCT 57.189 33.333 0.00 0.00 0.00 3.91
386 387 7.593644 AGTTTTTGGTCGTGTCTAAAATATTGC 59.406 33.333 0.00 0.00 30.44 3.56
387 388 9.458374 AAGTTTTTGGTCGTGTCTAAAATATTG 57.542 29.630 0.00 0.00 30.44 1.90
391 392 9.063615 AGATAAGTTTTTGGTCGTGTCTAAAAT 57.936 29.630 0.00 0.00 30.44 1.82
392 393 8.441312 AGATAAGTTTTTGGTCGTGTCTAAAA 57.559 30.769 0.00 0.00 0.00 1.52
393 394 8.441312 AAGATAAGTTTTTGGTCGTGTCTAAA 57.559 30.769 0.00 0.00 0.00 1.85
394 395 8.339714 CAAAGATAAGTTTTTGGTCGTGTCTAA 58.660 33.333 0.00 0.00 32.13 2.10
395 396 7.496591 ACAAAGATAAGTTTTTGGTCGTGTCTA 59.503 33.333 4.10 0.00 38.33 2.59
396 397 6.317893 ACAAAGATAAGTTTTTGGTCGTGTCT 59.682 34.615 4.10 0.00 38.33 3.41
397 398 6.492254 ACAAAGATAAGTTTTTGGTCGTGTC 58.508 36.000 4.10 0.00 38.33 3.67
398 399 6.445357 ACAAAGATAAGTTTTTGGTCGTGT 57.555 33.333 4.10 0.00 38.33 4.49
399 400 7.253950 CCAAACAAAGATAAGTTTTTGGTCGTG 60.254 37.037 5.24 0.00 38.33 4.35
400 401 6.754675 CCAAACAAAGATAAGTTTTTGGTCGT 59.245 34.615 5.24 0.00 38.33 4.34
401 402 6.975772 TCCAAACAAAGATAAGTTTTTGGTCG 59.024 34.615 11.05 0.00 38.33 4.79
402 403 8.887036 ATCCAAACAAAGATAAGTTTTTGGTC 57.113 30.769 11.05 0.00 38.33 4.02
403 404 8.482128 TGATCCAAACAAAGATAAGTTTTTGGT 58.518 29.630 11.05 0.00 38.33 3.67
404 405 8.885494 TGATCCAAACAAAGATAAGTTTTTGG 57.115 30.769 6.63 6.63 38.33 3.28
407 408 9.696917 GTCATGATCCAAACAAAGATAAGTTTT 57.303 29.630 0.00 0.00 35.90 2.43
408 409 8.306761 GGTCATGATCCAAACAAAGATAAGTTT 58.693 33.333 0.00 0.00 38.40 2.66
409 410 7.451255 TGGTCATGATCCAAACAAAGATAAGTT 59.549 33.333 12.79 0.00 31.50 2.66
410 411 6.947733 TGGTCATGATCCAAACAAAGATAAGT 59.052 34.615 12.79 0.00 31.50 2.24
411 412 7.395190 TGGTCATGATCCAAACAAAGATAAG 57.605 36.000 12.79 0.00 31.50 1.73
412 413 7.773489 TTGGTCATGATCCAAACAAAGATAA 57.227 32.000 20.58 0.00 41.25 1.75
413 414 7.959658 ATTGGTCATGATCCAAACAAAGATA 57.040 32.000 24.25 7.53 46.07 1.98
414 415 6.862469 ATTGGTCATGATCCAAACAAAGAT 57.138 33.333 24.25 10.56 46.07 2.40
415 416 6.494491 AGAATTGGTCATGATCCAAACAAAGA 59.506 34.615 24.25 8.59 46.07 2.52
416 417 6.694447 AGAATTGGTCATGATCCAAACAAAG 58.306 36.000 24.25 0.00 46.07 2.77
417 418 6.295236 GGAGAATTGGTCATGATCCAAACAAA 60.295 38.462 24.25 9.66 46.07 2.83
418 419 5.185635 GGAGAATTGGTCATGATCCAAACAA 59.814 40.000 24.25 8.62 46.07 2.83
419 420 4.706476 GGAGAATTGGTCATGATCCAAACA 59.294 41.667 24.25 10.21 46.07 2.83
420 421 4.952335 AGGAGAATTGGTCATGATCCAAAC 59.048 41.667 24.25 20.87 46.07 2.93
421 422 5.197224 AGGAGAATTGGTCATGATCCAAA 57.803 39.130 24.25 7.36 46.07 3.28
422 423 4.868172 AGGAGAATTGGTCATGATCCAA 57.132 40.909 23.29 23.29 46.82 3.53
423 424 4.529897 CAAGGAGAATTGGTCATGATCCA 58.470 43.478 2.86 8.14 0.00 3.41
424 425 3.887716 CCAAGGAGAATTGGTCATGATCC 59.112 47.826 2.86 2.17 44.01 3.36
442 443 1.318158 GGGAGCATTGACCTGCCAAG 61.318 60.000 0.00 0.00 43.33 3.61
443 444 1.304381 GGGAGCATTGACCTGCCAA 60.304 57.895 0.00 0.00 43.33 4.52
444 445 1.792757 AAGGGAGCATTGACCTGCCA 61.793 55.000 1.89 0.00 42.63 4.92
445 446 1.000396 AAGGGAGCATTGACCTGCC 60.000 57.895 0.00 0.00 43.33 4.85
446 447 1.941999 GCAAGGGAGCATTGACCTGC 61.942 60.000 0.00 0.00 42.62 4.85
447 448 1.318158 GGCAAGGGAGCATTGACCTG 61.318 60.000 0.00 0.00 34.17 4.00
448 449 1.000396 GGCAAGGGAGCATTGACCT 60.000 57.895 0.00 0.00 35.83 3.85
449 450 3.608432 GGCAAGGGAGCATTGACC 58.392 61.111 0.00 0.00 35.83 4.02
450 451 1.304381 TGGGCAAGGGAGCATTGAC 60.304 57.895 0.00 0.00 34.76 3.18
451 452 1.304381 GTGGGCAAGGGAGCATTGA 60.304 57.895 0.00 0.00 35.83 2.57
452 453 1.304713 AGTGGGCAAGGGAGCATTG 60.305 57.895 0.00 0.00 35.83 2.82
453 454 1.000396 GAGTGGGCAAGGGAGCATT 60.000 57.895 0.00 0.00 35.83 3.56
454 455 0.621571 TAGAGTGGGCAAGGGAGCAT 60.622 55.000 0.00 0.00 35.83 3.79
455 456 1.229496 TAGAGTGGGCAAGGGAGCA 60.229 57.895 0.00 0.00 35.83 4.26
456 457 1.268283 ACTAGAGTGGGCAAGGGAGC 61.268 60.000 0.00 0.00 0.00 4.70
457 458 1.208293 GAACTAGAGTGGGCAAGGGAG 59.792 57.143 0.00 0.00 0.00 4.30
458 459 1.276622 GAACTAGAGTGGGCAAGGGA 58.723 55.000 0.00 0.00 0.00 4.20
459 460 0.984230 TGAACTAGAGTGGGCAAGGG 59.016 55.000 0.00 0.00 0.00 3.95
460 461 2.859165 TTGAACTAGAGTGGGCAAGG 57.141 50.000 0.00 0.00 0.00 3.61
461 462 3.679389 ACATTGAACTAGAGTGGGCAAG 58.321 45.455 0.00 0.00 0.00 4.01
462 463 3.327757 AGACATTGAACTAGAGTGGGCAA 59.672 43.478 0.00 0.00 0.00 4.52
463 464 2.906389 AGACATTGAACTAGAGTGGGCA 59.094 45.455 0.00 0.00 0.00 5.36
464 465 3.618690 AGACATTGAACTAGAGTGGGC 57.381 47.619 0.00 0.00 0.00 5.36
465 466 6.644347 ACATTAGACATTGAACTAGAGTGGG 58.356 40.000 0.00 0.00 0.00 4.61
466 467 9.307121 CTAACATTAGACATTGAACTAGAGTGG 57.693 37.037 0.00 0.00 32.47 4.00
467 468 8.812329 GCTAACATTAGACATTGAACTAGAGTG 58.188 37.037 0.00 0.00 32.47 3.51
468 469 8.531982 TGCTAACATTAGACATTGAACTAGAGT 58.468 33.333 0.00 0.00 32.47 3.24
469 470 8.932945 TGCTAACATTAGACATTGAACTAGAG 57.067 34.615 0.00 0.00 32.47 2.43
470 471 8.749354 TCTGCTAACATTAGACATTGAACTAGA 58.251 33.333 0.00 0.00 32.47 2.43
471 472 8.932945 TCTGCTAACATTAGACATTGAACTAG 57.067 34.615 2.75 0.00 32.47 2.57
472 473 9.534565 GATCTGCTAACATTAGACATTGAACTA 57.465 33.333 2.75 0.00 32.47 2.24
473 474 8.043113 TGATCTGCTAACATTAGACATTGAACT 58.957 33.333 2.75 0.00 32.47 3.01
474 475 8.201554 TGATCTGCTAACATTAGACATTGAAC 57.798 34.615 2.75 0.00 32.47 3.18
475 476 8.833493 CATGATCTGCTAACATTAGACATTGAA 58.167 33.333 2.75 0.00 32.47 2.69
476 477 7.443272 CCATGATCTGCTAACATTAGACATTGA 59.557 37.037 2.75 0.00 32.47 2.57
477 478 7.308408 CCCATGATCTGCTAACATTAGACATTG 60.308 40.741 2.75 0.00 32.47 2.82
478 479 6.713903 CCCATGATCTGCTAACATTAGACATT 59.286 38.462 2.75 0.00 32.47 2.71
479 480 6.236409 CCCATGATCTGCTAACATTAGACAT 58.764 40.000 2.75 0.00 32.47 3.06
480 481 5.614308 CCCATGATCTGCTAACATTAGACA 58.386 41.667 2.75 0.38 32.47 3.41
481 482 4.453819 GCCCATGATCTGCTAACATTAGAC 59.546 45.833 2.75 0.00 32.47 2.59
482 483 4.505566 GGCCCATGATCTGCTAACATTAGA 60.506 45.833 2.75 0.00 32.47 2.10
483 484 3.755378 GGCCCATGATCTGCTAACATTAG 59.245 47.826 0.00 0.00 0.00 1.73
484 485 3.138098 TGGCCCATGATCTGCTAACATTA 59.862 43.478 0.00 0.00 0.00 1.90
485 486 2.091720 TGGCCCATGATCTGCTAACATT 60.092 45.455 0.00 0.00 0.00 2.71
486 487 1.496001 TGGCCCATGATCTGCTAACAT 59.504 47.619 0.00 0.00 0.00 2.71
487 488 0.918258 TGGCCCATGATCTGCTAACA 59.082 50.000 0.00 0.00 0.00 2.41
488 489 1.133976 ACTGGCCCATGATCTGCTAAC 60.134 52.381 0.00 0.00 0.00 2.34
489 490 1.216064 ACTGGCCCATGATCTGCTAA 58.784 50.000 0.00 0.00 0.00 3.09
490 491 2.101640 TACTGGCCCATGATCTGCTA 57.898 50.000 0.00 0.00 0.00 3.49
491 492 1.216064 TTACTGGCCCATGATCTGCT 58.784 50.000 0.00 0.00 0.00 4.24
492 493 2.057137 TTTACTGGCCCATGATCTGC 57.943 50.000 0.00 0.00 0.00 4.26
493 494 2.689983 GGTTTTACTGGCCCATGATCTG 59.310 50.000 0.00 0.00 0.00 2.90
494 495 2.582636 AGGTTTTACTGGCCCATGATCT 59.417 45.455 0.00 0.00 0.00 2.75
495 496 2.952310 GAGGTTTTACTGGCCCATGATC 59.048 50.000 0.00 0.00 0.00 2.92
496 497 2.311542 TGAGGTTTTACTGGCCCATGAT 59.688 45.455 0.00 0.00 0.00 2.45
497 498 1.707989 TGAGGTTTTACTGGCCCATGA 59.292 47.619 0.00 0.00 0.00 3.07
498 499 1.818674 GTGAGGTTTTACTGGCCCATG 59.181 52.381 0.00 0.00 0.00 3.66
499 500 1.272480 GGTGAGGTTTTACTGGCCCAT 60.272 52.381 0.00 0.00 0.00 4.00
500 501 0.111639 GGTGAGGTTTTACTGGCCCA 59.888 55.000 0.00 0.00 0.00 5.36
501 502 0.611062 GGGTGAGGTTTTACTGGCCC 60.611 60.000 0.00 0.00 0.00 5.80
502 503 0.111639 TGGGTGAGGTTTTACTGGCC 59.888 55.000 0.00 0.00 0.00 5.36
503 504 1.989706 TTGGGTGAGGTTTTACTGGC 58.010 50.000 0.00 0.00 0.00 4.85
504 505 5.545063 AATTTTGGGTGAGGTTTTACTGG 57.455 39.130 0.00 0.00 0.00 4.00
505 506 8.822855 GTTAAAATTTTGGGTGAGGTTTTACTG 58.177 33.333 13.76 0.00 0.00 2.74
506 507 8.764558 AGTTAAAATTTTGGGTGAGGTTTTACT 58.235 29.630 13.76 0.00 0.00 2.24
507 508 8.951787 AGTTAAAATTTTGGGTGAGGTTTTAC 57.048 30.769 13.76 0.00 0.00 2.01
509 510 8.764558 ACTAGTTAAAATTTTGGGTGAGGTTTT 58.235 29.630 13.76 0.00 0.00 2.43
510 511 8.313944 ACTAGTTAAAATTTTGGGTGAGGTTT 57.686 30.769 13.76 0.00 0.00 3.27
511 512 7.562088 TGACTAGTTAAAATTTTGGGTGAGGTT 59.438 33.333 13.76 0.00 0.00 3.50
512 513 7.064229 TGACTAGTTAAAATTTTGGGTGAGGT 58.936 34.615 13.76 4.09 0.00 3.85
513 514 7.519032 TGACTAGTTAAAATTTTGGGTGAGG 57.481 36.000 13.76 1.20 0.00 3.86
514 515 9.981114 ATTTGACTAGTTAAAATTTTGGGTGAG 57.019 29.630 15.83 6.85 0.00 3.51
571 572 6.093082 GGTGTTAGCCTTTATCTCGCTAAAAA 59.907 38.462 2.54 0.00 44.35 1.94
572 573 5.583457 GGTGTTAGCCTTTATCTCGCTAAAA 59.417 40.000 2.54 0.00 44.35 1.52
573 574 5.114081 GGTGTTAGCCTTTATCTCGCTAAA 58.886 41.667 2.54 0.00 44.35 1.85
586 587 1.214424 AGGTGTGTTTGGTGTTAGCCT 59.786 47.619 0.00 0.00 0.00 4.58
587 588 1.687563 AGGTGTGTTTGGTGTTAGCC 58.312 50.000 0.00 0.00 0.00 3.93
593 598 3.020984 AGGTTGTAAGGTGTGTTTGGTG 58.979 45.455 0.00 0.00 0.00 4.17
601 606 0.602905 GCGAGCAGGTTGTAAGGTGT 60.603 55.000 0.00 0.00 0.00 4.16
630 635 3.243975 TGGTTTCTCTACTCGTTGGGTTC 60.244 47.826 0.00 0.00 0.00 3.62
642 647 6.878923 CACATACTCATGGTTTGGTTTCTCTA 59.121 38.462 0.00 0.00 36.39 2.43
650 655 2.677836 CGTCCACATACTCATGGTTTGG 59.322 50.000 0.00 0.00 37.27 3.28
651 656 2.095853 GCGTCCACATACTCATGGTTTG 59.904 50.000 0.00 0.00 37.27 2.93
652 657 2.027192 AGCGTCCACATACTCATGGTTT 60.027 45.455 0.00 0.00 37.27 3.27
653 658 1.555075 AGCGTCCACATACTCATGGTT 59.445 47.619 0.00 0.00 37.27 3.67
654 659 1.134699 CAGCGTCCACATACTCATGGT 60.135 52.381 0.00 0.00 37.27 3.55
663 668 0.179004 TTGGGAAACAGCGTCCACAT 60.179 50.000 0.00 0.00 36.83 3.21
685 690 4.326766 CGTGCTGCGTGGGTTTGG 62.327 66.667 0.00 0.00 35.54 3.28
731 736 4.023707 CAGCAACTTTTTCACTCGAGGATT 60.024 41.667 18.41 0.00 0.00 3.01
733 738 2.872245 CAGCAACTTTTTCACTCGAGGA 59.128 45.455 18.41 8.44 0.00 3.71
734 739 2.603173 GCAGCAACTTTTTCACTCGAGG 60.603 50.000 18.41 5.96 0.00 4.63
735 740 2.289002 AGCAGCAACTTTTTCACTCGAG 59.711 45.455 11.84 11.84 0.00 4.04
798 809 2.045045 CATCCATGCACGGGGTGT 60.045 61.111 10.66 0.00 35.75 4.16
842 862 1.972660 ATACTGAAGCGTGGGGAGGC 61.973 60.000 0.00 0.00 0.00 4.70
850 870 6.605471 TGGGATGATTATATACTGAAGCGT 57.395 37.500 0.00 0.00 0.00 5.07
854 874 6.950860 TGGCTGGGATGATTATATACTGAA 57.049 37.500 0.00 0.00 0.00 3.02
855 875 6.100279 GGATGGCTGGGATGATTATATACTGA 59.900 42.308 0.00 0.00 0.00 3.41
866 886 0.995132 ATGGTGGATGGCTGGGATGA 60.995 55.000 0.00 0.00 0.00 2.92
896 916 0.409484 CTTCTTGATGGGGTTGGGGT 59.591 55.000 0.00 0.00 0.00 4.95
897 917 0.972471 GCTTCTTGATGGGGTTGGGG 60.972 60.000 0.00 0.00 0.00 4.96
898 918 0.251742 TGCTTCTTGATGGGGTTGGG 60.252 55.000 0.00 0.00 0.00 4.12
899 919 0.890683 GTGCTTCTTGATGGGGTTGG 59.109 55.000 0.00 0.00 0.00 3.77
900 920 1.270550 GTGTGCTTCTTGATGGGGTTG 59.729 52.381 0.00 0.00 0.00 3.77
901 921 1.133513 TGTGTGCTTCTTGATGGGGTT 60.134 47.619 0.00 0.00 0.00 4.11
913 933 2.034878 TCTCTCTGTGTCTGTGTGCTT 58.965 47.619 0.00 0.00 0.00 3.91
981 1001 1.062365 CACCACACGCACACACAAG 59.938 57.895 0.00 0.00 0.00 3.16
995 1015 2.970379 ATGTGCGCCTCCATCACCA 61.970 57.895 4.18 0.00 0.00 4.17
997 1017 2.475466 CCATGTGCGCCTCCATCAC 61.475 63.158 4.18 0.00 0.00 3.06
1317 1337 0.748729 GGTCGTCGTCCAGGATCTCT 60.749 60.000 3.49 0.00 0.00 3.10
1371 1391 2.992689 TAGTTGCGGAGGCGGTGA 60.993 61.111 0.00 0.00 44.10 4.02
1597 1629 0.458889 CCTCGTCTCGTCTCGTCTCT 60.459 60.000 0.00 0.00 0.00 3.10
1601 1633 3.126225 GCCCTCGTCTCGTCTCGT 61.126 66.667 0.00 0.00 0.00 4.18
1602 1634 3.878519 GGCCCTCGTCTCGTCTCG 61.879 72.222 0.00 0.00 0.00 4.04
1721 1765 5.598416 AACAAACAGAAAAGGGAAAGGAG 57.402 39.130 0.00 0.00 0.00 3.69
1725 1769 6.588373 CGAAGAAAACAAACAGAAAAGGGAAA 59.412 34.615 0.00 0.00 0.00 3.13
1728 1772 4.267690 GCGAAGAAAACAAACAGAAAAGGG 59.732 41.667 0.00 0.00 0.00 3.95
1789 1834 0.897401 GGAAAGGAGGCTGCTTGCTT 60.897 55.000 24.01 12.58 42.39 3.91
1807 1852 8.771766 CAAAGATGATGATATGAGTACACAAGG 58.228 37.037 0.00 0.00 0.00 3.61
1816 1861 8.824781 AGAAACGAACAAAGATGATGATATGAG 58.175 33.333 0.00 0.00 0.00 2.90
1817 1862 8.722480 AGAAACGAACAAAGATGATGATATGA 57.278 30.769 0.00 0.00 0.00 2.15
1818 1863 8.824781 AGAGAAACGAACAAAGATGATGATATG 58.175 33.333 0.00 0.00 0.00 1.78
1819 1864 8.824781 CAGAGAAACGAACAAAGATGATGATAT 58.175 33.333 0.00 0.00 0.00 1.63
1837 1882 0.040067 CAAACGGCAGCCAGAGAAAC 60.040 55.000 13.30 0.00 0.00 2.78
1843 1888 2.424705 ATTGCACAAACGGCAGCCAG 62.425 55.000 13.30 7.00 43.05 4.85
1862 1907 3.415212 CAGCCATCAGGAACTCAGAAAA 58.585 45.455 0.00 0.00 34.60 2.29
1897 1942 1.620822 CTGAGTTTTCCCCCTGTTGG 58.379 55.000 0.00 0.00 0.00 3.77
1900 1945 1.985895 CTACCTGAGTTTTCCCCCTGT 59.014 52.381 0.00 0.00 0.00 4.00
1936 1982 1.159285 CTCAGCGCCATCTTGTTGAA 58.841 50.000 2.29 0.00 0.00 2.69
1962 2008 7.598278 TGCGGTACAAAGATGAAATGTAAAAT 58.402 30.769 0.00 0.00 31.85 1.82
2001 2051 3.281158 TGCACATCGATTGGAATGACAT 58.719 40.909 0.00 0.00 0.00 3.06
2003 2053 2.938451 TCTGCACATCGATTGGAATGAC 59.062 45.455 0.00 0.00 0.00 3.06
2015 2065 1.002366 CAGCCGTAAGTCTGCACATC 58.998 55.000 0.00 0.00 0.00 3.06
2023 2073 2.097825 TCTAGTTCCCAGCCGTAAGTC 58.902 52.381 0.00 0.00 0.00 3.01
2026 2076 2.037144 GGATCTAGTTCCCAGCCGTAA 58.963 52.381 8.48 0.00 0.00 3.18
2049 2104 8.466617 TCTCAGTTATGGAGAGAATTAGTACC 57.533 38.462 0.00 0.00 36.52 3.34
2060 2115 5.832595 CAGAGGATTCTCTCAGTTATGGAGA 59.167 44.000 0.00 0.00 46.79 3.71
2066 2121 7.546250 AAAGAACAGAGGATTCTCTCAGTTA 57.454 36.000 0.00 0.00 46.79 2.24
2070 2125 6.268617 TGAGAAAAGAACAGAGGATTCTCTCA 59.731 38.462 0.00 0.00 46.79 3.27
2077 2132 3.007398 ACGCTGAGAAAAGAACAGAGGAT 59.993 43.478 0.00 0.00 36.18 3.24
2087 2143 0.514691 GCACAGGACGCTGAGAAAAG 59.485 55.000 0.00 0.00 0.00 2.27
2090 2146 2.343758 GGCACAGGACGCTGAGAA 59.656 61.111 0.00 0.00 0.00 2.87
2091 2147 2.917227 TGGCACAGGACGCTGAGA 60.917 61.111 0.00 0.00 0.00 3.27
2114 2170 1.117994 TCAGTCTAGGATGCTGCTGG 58.882 55.000 0.00 0.00 0.00 4.85
2115 2171 2.975732 TTCAGTCTAGGATGCTGCTG 57.024 50.000 0.00 3.11 0.00 4.41
2116 2172 4.197750 CAATTTCAGTCTAGGATGCTGCT 58.802 43.478 0.00 0.00 0.00 4.24
2117 2173 3.243002 GCAATTTCAGTCTAGGATGCTGC 60.243 47.826 0.00 0.00 0.00 5.25
2118 2174 3.943381 TGCAATTTCAGTCTAGGATGCTG 59.057 43.478 0.00 0.00 33.87 4.41
2119 2175 4.226427 TGCAATTTCAGTCTAGGATGCT 57.774 40.909 0.00 0.00 33.87 3.79
2120 2176 4.970662 TTGCAATTTCAGTCTAGGATGC 57.029 40.909 0.00 0.00 0.00 3.91
2121 2177 5.803967 GCTTTTGCAATTTCAGTCTAGGATG 59.196 40.000 0.00 0.00 46.58 3.51
2122 2178 5.958955 GCTTTTGCAATTTCAGTCTAGGAT 58.041 37.500 0.00 0.00 46.58 3.24
2123 2179 5.376854 GCTTTTGCAATTTCAGTCTAGGA 57.623 39.130 0.00 0.00 46.58 2.94
2146 2202 4.703093 CGCCTAAAGTTCTAAAATGGGGAA 59.297 41.667 0.00 0.00 0.00 3.97
2161 2223 6.142817 CGGAATTATTTGGAATCGCCTAAAG 58.857 40.000 0.00 0.00 35.05 1.85
2162 2224 5.009210 CCGGAATTATTTGGAATCGCCTAAA 59.991 40.000 0.00 0.00 35.05 1.85
2182 2244 1.681486 TAGCGTTGATCATGCCCGGA 61.681 55.000 0.73 0.00 38.31 5.14
2185 2247 4.829064 TTAATTAGCGTTGATCATGCCC 57.171 40.909 14.78 0.00 38.31 5.36
2186 2248 8.795786 TTTAATTAATTAGCGTTGATCATGCC 57.204 30.769 14.78 0.00 38.31 4.40
2207 2275 2.972625 AGCAGCAGCAGTACGATTTAA 58.027 42.857 3.17 0.00 45.49 1.52
2209 2277 2.093973 AGTAGCAGCAGCAGTACGATTT 60.094 45.455 3.17 0.00 45.49 2.17
2210 2278 1.478510 AGTAGCAGCAGCAGTACGATT 59.521 47.619 3.17 0.00 45.49 3.34
2211 2279 1.107114 AGTAGCAGCAGCAGTACGAT 58.893 50.000 3.17 0.00 45.49 3.73
2212 2280 0.171231 CAGTAGCAGCAGCAGTACGA 59.829 55.000 3.17 0.00 45.49 3.43
2214 2282 1.086634 GCCAGTAGCAGCAGCAGTAC 61.087 60.000 3.17 0.00 45.49 2.73
2229 2297 0.449388 GGTCAAATTCGCTCAGCCAG 59.551 55.000 0.00 0.00 0.00 4.85
2233 2301 5.563842 GTTAATCTGGTCAAATTCGCTCAG 58.436 41.667 0.00 0.00 0.00 3.35
2256 2324 2.289694 ACCACTCTTCTCATTGGTTCCG 60.290 50.000 0.00 0.00 39.41 4.30
2266 2334 3.214328 TCCTTTTGCAACCACTCTTCTC 58.786 45.455 0.00 0.00 0.00 2.87
2341 2413 2.419990 CGACTTGTCCTAATCCATGCCA 60.420 50.000 0.00 0.00 0.00 4.92
2471 2559 1.766059 ACAGTGACCCCACAGAGCA 60.766 57.895 0.00 0.00 45.54 4.26
2491 2579 1.191489 TCGTGAGACCCATGAAGCCA 61.191 55.000 0.00 0.00 37.83 4.75
2520 2609 7.014326 GTCCCTCCTTTCTGAAAAATAAAGTGT 59.986 37.037 4.18 0.00 0.00 3.55
2542 2632 1.473278 CTTCCGTCTGTCTACTGTCCC 59.527 57.143 0.00 0.00 0.00 4.46
2546 2636 3.127203 CAGTACCTTCCGTCTGTCTACTG 59.873 52.174 0.00 0.00 0.00 2.74
2549 2639 2.089980 GCAGTACCTTCCGTCTGTCTA 58.910 52.381 0.00 0.00 0.00 2.59
2550 2640 0.889306 GCAGTACCTTCCGTCTGTCT 59.111 55.000 0.00 0.00 0.00 3.41
2551 2641 0.601558 TGCAGTACCTTCCGTCTGTC 59.398 55.000 0.00 0.00 0.00 3.51
2553 2643 0.888619 TCTGCAGTACCTTCCGTCTG 59.111 55.000 14.67 0.00 0.00 3.51
2554 2644 1.853963 ATCTGCAGTACCTTCCGTCT 58.146 50.000 14.67 0.00 0.00 4.18
2556 2646 2.952978 CTCTATCTGCAGTACCTTCCGT 59.047 50.000 14.67 0.00 0.00 4.69
2557 2647 3.215151 TCTCTATCTGCAGTACCTTCCG 58.785 50.000 14.67 0.00 0.00 4.30
2558 2648 7.039363 ACAATATCTCTATCTGCAGTACCTTCC 60.039 40.741 14.67 0.00 0.00 3.46
2561 2651 9.540538 AATACAATATCTCTATCTGCAGTACCT 57.459 33.333 14.67 0.00 0.00 3.08
2562 2652 9.579768 CAATACAATATCTCTATCTGCAGTACC 57.420 37.037 14.67 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.