Multiple sequence alignment - TraesCS7A01G358000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G358000 chr7A 100.000 9221 0 0 1 9221 527147040 527156260 0.000000e+00 17029
1 TraesCS7A01G358000 chr7A 93.293 328 13 7 137 456 85721156 85721482 8.380000e-130 475
2 TraesCS7A01G358000 chr7A 91.919 198 10 3 1 192 85720869 85721066 1.180000e-68 272
3 TraesCS7A01G358000 chr7A 90.698 86 8 0 4026 4111 125705268 125705183 2.100000e-21 115
4 TraesCS7A01G358000 chr7D 96.591 8331 198 47 780 9063 471057928 471049637 0.000000e+00 13732
5 TraesCS7A01G358000 chr7B 97.173 6969 149 28 2126 9063 494744425 494737474 0.000000e+00 11734
6 TraesCS7A01G358000 chr7B 92.500 1360 61 23 783 2125 494745885 494744550 0.000000e+00 1908
7 TraesCS7A01G358000 chr5B 97.835 462 8 2 1 461 671477234 671477694 0.000000e+00 797
8 TraesCS7A01G358000 chr6A 96.989 465 6 5 1 458 616878086 616878549 0.000000e+00 774
9 TraesCS7A01G358000 chr1A 94.294 333 10 7 137 461 56164833 56164502 1.380000e-137 501
10 TraesCS7A01G358000 chr2B 93.694 333 12 7 137 461 216061528 216061859 2.990000e-134 490
11 TraesCS7A01G358000 chr2B 92.381 210 14 2 1 208 216061318 216061527 1.950000e-76 298
12 TraesCS7A01G358000 chr2B 82.822 163 19 4 9018 9173 786141436 786141596 4.490000e-28 137
13 TraesCS7A01G358000 chrUn 93.293 328 13 7 137 456 82640480 82640154 8.380000e-130 475
14 TraesCS7A01G358000 chrUn 93.814 291 10 6 176 458 184623935 184623645 1.840000e-116 431
15 TraesCS7A01G358000 chrUn 90.821 207 13 3 1 201 82640689 82640483 1.180000e-68 272
16 TraesCS7A01G358000 chr5A 92.727 330 15 8 137 458 668766314 668766642 1.400000e-127 468
17 TraesCS7A01G358000 chr5A 93.434 198 7 3 1 192 668766105 668766302 1.170000e-73 289
18 TraesCS7A01G358000 chr5A 82.036 167 22 5 9017 9175 422444467 422444301 1.620000e-27 135
19 TraesCS7A01G358000 chr5A 92.222 90 5 1 4030 4119 657060109 657060022 9.720000e-25 126
20 TraesCS7A01G358000 chr5A 88.298 94 8 3 4030 4121 668155679 668155587 9.790000e-20 110
21 TraesCS7A01G358000 chr4A 92.121 330 16 9 137 458 3083719 3083392 3.030000e-124 457
22 TraesCS7A01G358000 chr4A 92.157 204 10 3 1 198 3083928 3083725 5.450000e-72 283
23 TraesCS7A01G358000 chr4A 81.548 168 23 5 9018 9177 324986544 324986711 2.090000e-26 132
24 TraesCS7A01G358000 chr1B 92.308 182 13 1 1 181 90355003 90354822 3.300000e-64 257
25 TraesCS7A01G358000 chr1B 82.738 168 15 9 9017 9173 615123986 615124150 4.490000e-28 137
26 TraesCS7A01G358000 chr3A 83.133 166 21 3 9015 9173 485686647 485686482 2.680000e-30 145
27 TraesCS7A01G358000 chr3A 82.635 167 21 5 9017 9175 452657030 452657196 3.470000e-29 141
28 TraesCS7A01G358000 chr6D 82.036 167 22 5 9017 9175 160784775 160784609 1.620000e-27 135
29 TraesCS7A01G358000 chr3B 81.928 166 23 4 9015 9173 474408698 474408533 5.810000e-27 134
30 TraesCS7A01G358000 chr2A 81.609 174 20 8 9011 9173 376078221 376078049 5.810000e-27 134
31 TraesCS7A01G358000 chr4D 91.667 84 7 0 4030 4113 402527928 402528011 5.850000e-22 117
32 TraesCS7A01G358000 chr4B 91.667 84 7 0 4030 4113 498374457 498374540 5.850000e-22 117
33 TraesCS7A01G358000 chr3D 87.500 104 3 7 4030 4123 459212412 459212515 2.720000e-20 111
34 TraesCS7A01G358000 chr2D 89.888 89 6 3 4029 4115 188810598 188810511 2.720000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G358000 chr7A 527147040 527156260 9220 False 17029.0 17029 100.0000 1 9221 1 chr7A.!!$F1 9220
1 TraesCS7A01G358000 chr7A 85720869 85721482 613 False 373.5 475 92.6060 1 456 2 chr7A.!!$F2 455
2 TraesCS7A01G358000 chr7D 471049637 471057928 8291 True 13732.0 13732 96.5910 780 9063 1 chr7D.!!$R1 8283
3 TraesCS7A01G358000 chr7B 494737474 494745885 8411 True 6821.0 11734 94.8365 783 9063 2 chr7B.!!$R1 8280
4 TraesCS7A01G358000 chr2B 216061318 216061859 541 False 394.0 490 93.0375 1 461 2 chr2B.!!$F2 460
5 TraesCS7A01G358000 chrUn 82640154 82640689 535 True 373.5 475 92.0570 1 456 2 chrUn.!!$R2 455
6 TraesCS7A01G358000 chr5A 668766105 668766642 537 False 378.5 468 93.0805 1 458 2 chr5A.!!$F1 457
7 TraesCS7A01G358000 chr4A 3083392 3083928 536 True 370.0 457 92.1390 1 458 2 chr4A.!!$R1 457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 892 0.038526 GACACGACGAGTTGGTGGAT 60.039 55.000 0.00 0.00 36.02 3.41 F
734 893 0.391597 ACACGACGAGTTGGTGGATT 59.608 50.000 0.00 0.00 36.02 3.01 F
959 1124 0.747852 CTACTCTTCGGCCCTTCCTC 59.252 60.000 0.00 0.00 0.00 3.71 F
1327 1501 1.142748 GGAGGTGCGTGGATCTGAG 59.857 63.158 0.00 0.00 0.00 3.35 F
1328 1502 1.520342 GAGGTGCGTGGATCTGAGC 60.520 63.158 0.00 0.00 0.00 4.26 F
2723 3028 2.161609 GGATGTTCCCACGTTGATTGAC 59.838 50.000 0.00 0.00 0.00 3.18 F
3828 4134 3.482436 TCTGCCACGGTATGTTTCTTTT 58.518 40.909 0.00 0.00 0.00 2.27 F
4521 4828 0.398318 GGAAGGAGAAGTGCAGTGGT 59.602 55.000 0.00 0.00 0.00 4.16 F
5538 5855 1.630369 AGCCTGGCTCAATACTTGTGA 59.370 47.619 17.22 0.00 30.62 3.58 F
6989 7312 3.250762 TGTTCTTTCTGCAGATTGAACCG 59.749 43.478 34.31 15.15 36.61 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1754 0.179140 ACACACAAGCAAAACTGCGG 60.179 50.000 0.00 0.00 40.27 5.69 R
1918 2093 1.069227 CAGGCGCAAAACCTACAGAAC 60.069 52.381 10.83 0.00 35.10 3.01 R
2397 2698 2.281070 ACGAGCCAAGTGCAGTGG 60.281 61.111 11.38 11.38 44.83 4.00 R
3047 3353 0.396974 TGTCCAAGGCAAGCAAAGGT 60.397 50.000 0.00 0.00 0.00 3.50 R
3335 3641 9.858247 GTGCATGCAATTTTTCATATAAGAATG 57.142 29.630 24.58 0.00 0.00 2.67 R
4181 4487 1.037579 ATAAAGCGGCAAAGGCTCCC 61.038 55.000 1.45 0.00 40.53 4.30 R
4819 5129 1.033746 CCAGGCATGTGCTTTCCGAT 61.034 55.000 4.84 0.00 41.70 4.18 R
5568 5885 1.630369 TGAGAGGAAGGGGTGTCAATG 59.370 52.381 0.00 0.00 0.00 2.82 R
7043 7366 2.226330 TGGTTCCACAGAAAATGGACG 58.774 47.619 0.00 0.00 46.09 4.79 R
8747 9073 1.069204 GCTCCGAGATAGCATCCAACA 59.931 52.381 0.00 0.00 39.83 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.520982 CGGAGATGAGGGGGCGTA 60.521 66.667 0.00 0.00 0.00 4.42
70 71 2.880879 CCTCGTCGATGTGGTGCG 60.881 66.667 16.06 0.37 0.00 5.34
222 373 4.162690 GGAAGCGGCGGAGTGGAT 62.163 66.667 9.78 0.00 0.00 3.41
223 374 2.892425 GAAGCGGCGGAGTGGATG 60.892 66.667 9.78 0.00 0.00 3.51
273 428 4.758251 TGGGGCGACAGATGCGTG 62.758 66.667 0.00 0.00 0.00 5.34
277 432 3.478394 GCGACAGATGCGTGCGAA 61.478 61.111 0.00 0.00 0.00 4.70
279 434 2.792290 CGACAGATGCGTGCGAAGG 61.792 63.158 0.00 0.00 0.00 3.46
333 492 6.256643 ACTTTAGTCACTTTTAGTTGGGGA 57.743 37.500 0.00 0.00 0.00 4.81
405 564 6.017357 GGTGTTTGGAGGTTTACTGACTAAAG 60.017 42.308 0.00 0.00 0.00 1.85
461 620 3.264450 AGTGATCCAAACACCCTCTTAGG 59.736 47.826 0.00 0.00 38.82 2.69
462 621 3.263425 GTGATCCAAACACCCTCTTAGGA 59.737 47.826 0.00 0.00 37.67 2.94
463 622 4.080299 GTGATCCAAACACCCTCTTAGGAT 60.080 45.833 0.00 0.00 37.67 3.24
464 623 4.540099 TGATCCAAACACCCTCTTAGGATT 59.460 41.667 0.00 0.00 37.67 3.01
465 624 4.301072 TCCAAACACCCTCTTAGGATTG 57.699 45.455 0.00 0.00 37.67 2.67
466 625 3.913799 TCCAAACACCCTCTTAGGATTGA 59.086 43.478 0.00 0.00 37.67 2.57
467 626 4.010349 CCAAACACCCTCTTAGGATTGAC 58.990 47.826 0.00 0.00 37.67 3.18
468 627 3.611766 AACACCCTCTTAGGATTGACG 57.388 47.619 0.00 0.00 37.67 4.35
469 628 2.816411 ACACCCTCTTAGGATTGACGA 58.184 47.619 0.00 0.00 37.67 4.20
470 629 3.170717 ACACCCTCTTAGGATTGACGAA 58.829 45.455 0.00 0.00 37.67 3.85
471 630 3.195825 ACACCCTCTTAGGATTGACGAAG 59.804 47.826 0.00 0.00 37.67 3.79
472 631 3.195825 CACCCTCTTAGGATTGACGAAGT 59.804 47.826 0.00 0.00 41.09 3.01
486 645 2.886081 ACGAAGTCATCACATGCTCTC 58.114 47.619 0.00 0.00 29.74 3.20
487 646 1.851053 CGAAGTCATCACATGCTCTCG 59.149 52.381 0.00 0.00 0.00 4.04
488 647 2.733542 CGAAGTCATCACATGCTCTCGT 60.734 50.000 0.00 0.00 0.00 4.18
489 648 3.487544 CGAAGTCATCACATGCTCTCGTA 60.488 47.826 0.00 0.00 0.00 3.43
490 649 3.706802 AGTCATCACATGCTCTCGTAG 57.293 47.619 0.00 0.00 0.00 3.51
491 650 3.020274 AGTCATCACATGCTCTCGTAGT 58.980 45.455 0.00 0.00 0.00 2.73
492 651 3.066064 AGTCATCACATGCTCTCGTAGTC 59.934 47.826 0.00 0.00 0.00 2.59
493 652 2.032178 TCATCACATGCTCTCGTAGTCG 59.968 50.000 0.00 0.00 38.55 4.18
494 653 1.734163 TCACATGCTCTCGTAGTCGA 58.266 50.000 0.00 0.00 44.12 4.20
495 654 2.289565 TCACATGCTCTCGTAGTCGAT 58.710 47.619 0.00 0.00 45.21 3.59
496 655 2.032178 TCACATGCTCTCGTAGTCGATG 59.968 50.000 0.00 0.00 45.21 3.84
497 656 2.032178 CACATGCTCTCGTAGTCGATGA 59.968 50.000 0.00 0.00 45.21 2.92
498 657 2.683362 ACATGCTCTCGTAGTCGATGAA 59.317 45.455 0.00 0.00 45.21 2.57
499 658 3.128764 ACATGCTCTCGTAGTCGATGAAA 59.871 43.478 0.00 0.00 45.21 2.69
500 659 3.842732 TGCTCTCGTAGTCGATGAAAA 57.157 42.857 0.00 0.00 45.21 2.29
501 660 3.499048 TGCTCTCGTAGTCGATGAAAAC 58.501 45.455 0.00 0.00 45.21 2.43
502 661 3.057806 TGCTCTCGTAGTCGATGAAAACA 60.058 43.478 0.00 0.00 45.21 2.83
503 662 4.106197 GCTCTCGTAGTCGATGAAAACAT 58.894 43.478 0.00 0.00 45.21 2.71
504 663 4.205385 GCTCTCGTAGTCGATGAAAACATC 59.795 45.833 0.00 0.00 45.21 3.06
505 664 5.562506 TCTCGTAGTCGATGAAAACATCT 57.437 39.130 0.00 0.00 45.21 2.90
506 665 5.950883 TCTCGTAGTCGATGAAAACATCTT 58.049 37.500 0.00 0.00 45.21 2.40
507 666 6.028368 TCTCGTAGTCGATGAAAACATCTTC 58.972 40.000 0.00 0.00 45.21 2.87
508 667 5.100259 TCGTAGTCGATGAAAACATCTTCC 58.900 41.667 0.00 0.00 41.35 3.46
509 668 5.103000 CGTAGTCGATGAAAACATCTTCCT 58.897 41.667 0.00 0.00 39.71 3.36
510 669 5.230306 CGTAGTCGATGAAAACATCTTCCTC 59.770 44.000 0.00 0.00 39.71 3.71
511 670 5.152623 AGTCGATGAAAACATCTTCCTCA 57.847 39.130 0.00 0.00 0.00 3.86
512 671 4.932200 AGTCGATGAAAACATCTTCCTCAC 59.068 41.667 0.00 0.00 0.00 3.51
513 672 3.926527 TCGATGAAAACATCTTCCTCACG 59.073 43.478 0.00 0.00 0.00 4.35
514 673 3.926527 CGATGAAAACATCTTCCTCACGA 59.073 43.478 0.00 0.00 0.00 4.35
515 674 4.388773 CGATGAAAACATCTTCCTCACGAA 59.611 41.667 0.00 0.00 0.00 3.85
516 675 5.107104 CGATGAAAACATCTTCCTCACGAAA 60.107 40.000 0.00 0.00 0.00 3.46
517 676 5.418310 TGAAAACATCTTCCTCACGAAAC 57.582 39.130 0.00 0.00 0.00 2.78
518 677 4.025229 TGAAAACATCTTCCTCACGAAACG 60.025 41.667 0.00 0.00 0.00 3.60
519 678 3.380479 AACATCTTCCTCACGAAACGA 57.620 42.857 0.00 0.00 0.00 3.85
520 679 3.380479 ACATCTTCCTCACGAAACGAA 57.620 42.857 0.00 0.00 0.00 3.85
521 680 3.057734 ACATCTTCCTCACGAAACGAAC 58.942 45.455 0.00 0.00 0.00 3.95
522 681 2.875087 TCTTCCTCACGAAACGAACA 57.125 45.000 0.00 0.00 0.00 3.18
523 682 3.380479 TCTTCCTCACGAAACGAACAT 57.620 42.857 0.00 0.00 0.00 2.71
524 683 3.314553 TCTTCCTCACGAAACGAACATC 58.685 45.455 0.00 0.00 0.00 3.06
525 684 1.693467 TCCTCACGAAACGAACATCG 58.307 50.000 0.00 0.00 46.93 3.84
526 685 1.267533 TCCTCACGAAACGAACATCGA 59.732 47.619 6.78 0.00 43.74 3.59
527 686 1.385743 CCTCACGAAACGAACATCGAC 59.614 52.381 6.78 0.00 43.74 4.20
528 687 2.048498 CTCACGAAACGAACATCGACA 58.952 47.619 6.78 0.00 43.74 4.35
529 688 2.048498 TCACGAAACGAACATCGACAG 58.952 47.619 6.78 0.00 43.74 3.51
530 689 2.048498 CACGAAACGAACATCGACAGA 58.952 47.619 6.78 0.00 43.74 3.41
531 690 2.469886 CACGAAACGAACATCGACAGAA 59.530 45.455 6.78 0.00 43.74 3.02
532 691 3.060807 CACGAAACGAACATCGACAGAAA 60.061 43.478 6.78 0.00 43.74 2.52
533 692 3.181774 ACGAAACGAACATCGACAGAAAG 59.818 43.478 6.78 0.00 43.74 2.62
534 693 3.470562 GAAACGAACATCGACAGAAAGC 58.529 45.455 6.78 0.00 43.74 3.51
535 694 1.429463 ACGAACATCGACAGAAAGCC 58.571 50.000 6.78 0.00 43.74 4.35
536 695 1.000955 ACGAACATCGACAGAAAGCCT 59.999 47.619 6.78 0.00 43.74 4.58
537 696 1.656095 CGAACATCGACAGAAAGCCTC 59.344 52.381 0.00 0.00 43.74 4.70
538 697 2.688507 GAACATCGACAGAAAGCCTCA 58.311 47.619 0.00 0.00 0.00 3.86
539 698 2.839486 ACATCGACAGAAAGCCTCAA 57.161 45.000 0.00 0.00 0.00 3.02
540 699 3.126001 ACATCGACAGAAAGCCTCAAA 57.874 42.857 0.00 0.00 0.00 2.69
541 700 3.679389 ACATCGACAGAAAGCCTCAAAT 58.321 40.909 0.00 0.00 0.00 2.32
542 701 4.832248 ACATCGACAGAAAGCCTCAAATA 58.168 39.130 0.00 0.00 0.00 1.40
543 702 5.245531 ACATCGACAGAAAGCCTCAAATAA 58.754 37.500 0.00 0.00 0.00 1.40
544 703 5.352569 ACATCGACAGAAAGCCTCAAATAAG 59.647 40.000 0.00 0.00 0.00 1.73
545 704 4.894784 TCGACAGAAAGCCTCAAATAAGT 58.105 39.130 0.00 0.00 0.00 2.24
546 705 4.929808 TCGACAGAAAGCCTCAAATAAGTC 59.070 41.667 0.00 0.00 0.00 3.01
547 706 4.093556 CGACAGAAAGCCTCAAATAAGTCC 59.906 45.833 0.00 0.00 0.00 3.85
548 707 4.336280 ACAGAAAGCCTCAAATAAGTCCC 58.664 43.478 0.00 0.00 0.00 4.46
549 708 3.696548 CAGAAAGCCTCAAATAAGTCCCC 59.303 47.826 0.00 0.00 0.00 4.81
550 709 3.333680 AGAAAGCCTCAAATAAGTCCCCA 59.666 43.478 0.00 0.00 0.00 4.96
551 710 3.825908 AAGCCTCAAATAAGTCCCCAA 57.174 42.857 0.00 0.00 0.00 4.12
552 711 3.372440 AGCCTCAAATAAGTCCCCAAG 57.628 47.619 0.00 0.00 0.00 3.61
553 712 2.919602 AGCCTCAAATAAGTCCCCAAGA 59.080 45.455 0.00 0.00 0.00 3.02
554 713 3.333680 AGCCTCAAATAAGTCCCCAAGAA 59.666 43.478 0.00 0.00 0.00 2.52
555 714 4.017130 AGCCTCAAATAAGTCCCCAAGAAT 60.017 41.667 0.00 0.00 0.00 2.40
556 715 4.098501 GCCTCAAATAAGTCCCCAAGAATG 59.901 45.833 0.00 0.00 0.00 2.67
557 716 4.098501 CCTCAAATAAGTCCCCAAGAATGC 59.901 45.833 0.00 0.00 0.00 3.56
558 717 4.671831 TCAAATAAGTCCCCAAGAATGCA 58.328 39.130 0.00 0.00 0.00 3.96
559 718 5.083122 TCAAATAAGTCCCCAAGAATGCAA 58.917 37.500 0.00 0.00 0.00 4.08
560 719 5.721000 TCAAATAAGTCCCCAAGAATGCAAT 59.279 36.000 0.00 0.00 0.00 3.56
561 720 5.859205 AATAAGTCCCCAAGAATGCAATC 57.141 39.130 0.00 0.00 0.00 2.67
562 721 2.905415 AGTCCCCAAGAATGCAATCA 57.095 45.000 4.25 0.00 0.00 2.57
563 722 2.731572 AGTCCCCAAGAATGCAATCAG 58.268 47.619 4.25 0.00 0.00 2.90
564 723 1.135721 GTCCCCAAGAATGCAATCAGC 59.864 52.381 4.25 0.00 45.96 4.26
574 733 3.231222 GCAATCAGCAATGTCGAGC 57.769 52.632 0.00 0.00 44.79 5.03
575 734 0.248377 GCAATCAGCAATGTCGAGCC 60.248 55.000 0.00 0.00 44.79 4.70
576 735 1.376543 CAATCAGCAATGTCGAGCCT 58.623 50.000 0.00 0.00 0.00 4.58
577 736 2.554142 CAATCAGCAATGTCGAGCCTA 58.446 47.619 0.00 0.00 0.00 3.93
578 737 2.522836 ATCAGCAATGTCGAGCCTAG 57.477 50.000 0.00 0.00 0.00 3.02
579 738 0.461548 TCAGCAATGTCGAGCCTAGG 59.538 55.000 3.67 3.67 0.00 3.02
580 739 0.461548 CAGCAATGTCGAGCCTAGGA 59.538 55.000 14.75 0.00 0.00 2.94
581 740 0.461961 AGCAATGTCGAGCCTAGGAC 59.538 55.000 14.75 3.76 0.00 3.85
582 741 0.461961 GCAATGTCGAGCCTAGGACT 59.538 55.000 14.75 9.37 34.31 3.85
583 742 1.134670 GCAATGTCGAGCCTAGGACTT 60.135 52.381 14.75 0.00 34.31 3.01
584 743 2.544685 CAATGTCGAGCCTAGGACTTG 58.455 52.381 14.75 13.04 34.31 3.16
585 744 2.145397 ATGTCGAGCCTAGGACTTGA 57.855 50.000 14.75 15.16 34.31 3.02
586 745 1.919240 TGTCGAGCCTAGGACTTGAA 58.081 50.000 14.75 7.00 34.31 2.69
587 746 1.544691 TGTCGAGCCTAGGACTTGAAC 59.455 52.381 14.75 12.52 34.31 3.18
588 747 1.135053 GTCGAGCCTAGGACTTGAACC 60.135 57.143 14.75 4.44 29.33 3.62
589 748 0.175989 CGAGCCTAGGACTTGAACCC 59.824 60.000 14.75 0.00 0.00 4.11
590 749 1.574263 GAGCCTAGGACTTGAACCCT 58.426 55.000 14.75 0.00 36.60 4.34
591 750 2.748388 GAGCCTAGGACTTGAACCCTA 58.252 52.381 14.75 0.00 34.11 3.53
592 751 3.310193 GAGCCTAGGACTTGAACCCTAT 58.690 50.000 14.75 0.00 34.77 2.57
593 752 3.041946 AGCCTAGGACTTGAACCCTATG 58.958 50.000 14.75 0.00 34.77 2.23
594 753 2.104963 GCCTAGGACTTGAACCCTATGG 59.895 54.545 14.75 0.00 34.77 2.74
606 765 1.986882 CCCTATGGGCTGATTTCACC 58.013 55.000 0.00 0.00 35.35 4.02
607 766 1.215173 CCCTATGGGCTGATTTCACCA 59.785 52.381 0.00 0.00 35.35 4.17
608 767 2.158415 CCCTATGGGCTGATTTCACCAT 60.158 50.000 7.58 7.58 45.19 3.55
609 768 3.074390 CCCTATGGGCTGATTTCACCATA 59.926 47.826 8.71 8.71 43.16 2.74
610 769 4.074970 CCTATGGGCTGATTTCACCATAC 58.925 47.826 6.04 0.00 43.16 2.39
611 770 2.036958 TGGGCTGATTTCACCATACG 57.963 50.000 0.00 0.00 0.00 3.06
612 771 1.557371 TGGGCTGATTTCACCATACGA 59.443 47.619 0.00 0.00 0.00 3.43
613 772 2.026729 TGGGCTGATTTCACCATACGAA 60.027 45.455 0.00 0.00 0.00 3.85
614 773 3.013921 GGGCTGATTTCACCATACGAAA 58.986 45.455 0.00 0.00 36.83 3.46
615 774 3.181500 GGGCTGATTTCACCATACGAAAC 60.181 47.826 0.00 0.00 35.31 2.78
616 775 3.181500 GGCTGATTTCACCATACGAAACC 60.181 47.826 0.00 0.00 35.31 3.27
617 776 3.689649 GCTGATTTCACCATACGAAACCT 59.310 43.478 0.00 0.00 35.31 3.50
618 777 4.873827 GCTGATTTCACCATACGAAACCTA 59.126 41.667 0.00 0.00 35.31 3.08
619 778 5.353123 GCTGATTTCACCATACGAAACCTAA 59.647 40.000 0.00 0.00 35.31 2.69
620 779 6.038271 GCTGATTTCACCATACGAAACCTAAT 59.962 38.462 0.00 0.00 35.31 1.73
621 780 7.315247 TGATTTCACCATACGAAACCTAATG 57.685 36.000 0.00 0.00 35.31 1.90
622 781 7.106890 TGATTTCACCATACGAAACCTAATGA 58.893 34.615 0.00 0.00 35.31 2.57
623 782 7.773224 TGATTTCACCATACGAAACCTAATGAT 59.227 33.333 0.00 0.00 35.31 2.45
624 783 7.548196 TTTCACCATACGAAACCTAATGATC 57.452 36.000 0.00 0.00 0.00 2.92
625 784 6.479972 TCACCATACGAAACCTAATGATCT 57.520 37.500 0.00 0.00 0.00 2.75
626 785 6.280643 TCACCATACGAAACCTAATGATCTG 58.719 40.000 0.00 0.00 0.00 2.90
627 786 6.097696 TCACCATACGAAACCTAATGATCTGA 59.902 38.462 0.00 0.00 0.00 3.27
628 787 6.422100 CACCATACGAAACCTAATGATCTGAG 59.578 42.308 0.00 0.00 0.00 3.35
629 788 5.406780 CCATACGAAACCTAATGATCTGAGC 59.593 44.000 0.00 0.00 0.00 4.26
630 789 4.744795 ACGAAACCTAATGATCTGAGCT 57.255 40.909 0.00 0.00 0.00 4.09
631 790 5.854010 ACGAAACCTAATGATCTGAGCTA 57.146 39.130 0.00 0.00 0.00 3.32
632 791 5.593010 ACGAAACCTAATGATCTGAGCTAC 58.407 41.667 0.00 0.00 0.00 3.58
633 792 4.677378 CGAAACCTAATGATCTGAGCTACG 59.323 45.833 0.00 0.00 0.00 3.51
634 793 5.505819 CGAAACCTAATGATCTGAGCTACGA 60.506 44.000 0.00 0.00 0.00 3.43
635 794 6.412362 AAACCTAATGATCTGAGCTACGAT 57.588 37.500 0.00 0.00 0.00 3.73
636 795 5.637006 ACCTAATGATCTGAGCTACGATC 57.363 43.478 14.68 14.68 37.22 3.69
637 796 5.073428 ACCTAATGATCTGAGCTACGATCA 58.927 41.667 22.43 22.43 46.94 2.92
638 797 5.182950 ACCTAATGATCTGAGCTACGATCAG 59.817 44.000 23.65 16.06 46.33 2.90
639 798 5.182950 CCTAATGATCTGAGCTACGATCAGT 59.817 44.000 23.65 23.24 46.33 3.41
640 799 5.528043 AATGATCTGAGCTACGATCAGTT 57.472 39.130 23.65 17.25 46.33 3.16
641 800 4.560136 TGATCTGAGCTACGATCAGTTC 57.440 45.455 18.49 11.69 43.79 3.01
652 811 2.935042 CGATCAGTTCGCCTATACCTG 58.065 52.381 0.00 0.00 41.69 4.00
653 812 2.678324 GATCAGTTCGCCTATACCTGC 58.322 52.381 0.00 0.00 0.00 4.85
654 813 1.480789 TCAGTTCGCCTATACCTGCA 58.519 50.000 0.00 0.00 0.00 4.41
655 814 1.828595 TCAGTTCGCCTATACCTGCAA 59.171 47.619 0.00 0.00 0.00 4.08
656 815 2.434336 TCAGTTCGCCTATACCTGCAAT 59.566 45.455 0.00 0.00 0.00 3.56
657 816 2.802816 CAGTTCGCCTATACCTGCAATC 59.197 50.000 0.00 0.00 0.00 2.67
658 817 2.143925 GTTCGCCTATACCTGCAATCC 58.856 52.381 0.00 0.00 0.00 3.01
659 818 1.717032 TCGCCTATACCTGCAATCCT 58.283 50.000 0.00 0.00 0.00 3.24
660 819 1.344438 TCGCCTATACCTGCAATCCTG 59.656 52.381 0.00 0.00 0.00 3.86
674 833 4.696479 CAATCCTGCAATACTACTCCCT 57.304 45.455 0.00 0.00 0.00 4.20
675 834 4.384056 CAATCCTGCAATACTACTCCCTG 58.616 47.826 0.00 0.00 0.00 4.45
676 835 1.762957 TCCTGCAATACTACTCCCTGC 59.237 52.381 0.00 0.00 0.00 4.85
677 836 1.486310 CCTGCAATACTACTCCCTGCA 59.514 52.381 0.00 0.00 40.54 4.41
678 837 2.105477 CCTGCAATACTACTCCCTGCAT 59.895 50.000 0.00 0.00 41.81 3.96
679 838 3.434167 CCTGCAATACTACTCCCTGCATT 60.434 47.826 0.00 0.00 41.81 3.56
680 839 4.202441 CTGCAATACTACTCCCTGCATTT 58.798 43.478 0.00 0.00 41.81 2.32
681 840 4.199310 TGCAATACTACTCCCTGCATTTC 58.801 43.478 0.00 0.00 38.06 2.17
682 841 4.080356 TGCAATACTACTCCCTGCATTTCT 60.080 41.667 0.00 0.00 38.06 2.52
683 842 4.274459 GCAATACTACTCCCTGCATTTCTG 59.726 45.833 0.00 0.00 33.19 3.02
684 843 4.696479 ATACTACTCCCTGCATTTCTGG 57.304 45.455 0.00 0.00 0.00 3.86
685 844 2.551270 ACTACTCCCTGCATTTCTGGA 58.449 47.619 0.00 0.00 35.98 3.86
686 845 2.912956 ACTACTCCCTGCATTTCTGGAA 59.087 45.455 0.00 0.00 35.98 3.53
687 846 3.525199 ACTACTCCCTGCATTTCTGGAAT 59.475 43.478 0.00 0.00 35.98 3.01
688 847 3.463048 ACTCCCTGCATTTCTGGAATT 57.537 42.857 0.00 0.00 35.98 2.17
689 848 3.359950 ACTCCCTGCATTTCTGGAATTC 58.640 45.455 0.00 0.00 35.98 2.17
690 849 3.011032 ACTCCCTGCATTTCTGGAATTCT 59.989 43.478 5.23 0.00 35.98 2.40
691 850 3.359033 TCCCTGCATTTCTGGAATTCTG 58.641 45.455 5.23 0.00 35.98 3.02
692 851 2.429610 CCCTGCATTTCTGGAATTCTGG 59.570 50.000 5.23 0.00 35.98 3.86
693 852 2.429610 CCTGCATTTCTGGAATTCTGGG 59.570 50.000 5.23 0.00 35.98 4.45
694 853 1.826720 TGCATTTCTGGAATTCTGGGC 59.173 47.619 5.23 1.33 0.00 5.36
695 854 2.105766 GCATTTCTGGAATTCTGGGCT 58.894 47.619 5.23 0.00 0.00 5.19
696 855 2.159142 GCATTTCTGGAATTCTGGGCTG 60.159 50.000 5.23 0.00 0.00 4.85
697 856 3.359033 CATTTCTGGAATTCTGGGCTGA 58.641 45.455 5.23 0.00 0.00 4.26
698 857 3.744940 TTTCTGGAATTCTGGGCTGAT 57.255 42.857 5.23 0.00 0.00 2.90
699 858 3.287867 TTCTGGAATTCTGGGCTGATC 57.712 47.619 5.23 0.00 0.00 2.92
700 859 1.139654 TCTGGAATTCTGGGCTGATCG 59.860 52.381 5.23 0.00 0.00 3.69
701 860 1.139654 CTGGAATTCTGGGCTGATCGA 59.860 52.381 5.23 0.00 0.00 3.59
702 861 1.559219 TGGAATTCTGGGCTGATCGAA 59.441 47.619 5.23 0.00 0.00 3.71
703 862 2.216898 GGAATTCTGGGCTGATCGAAG 58.783 52.381 5.23 0.00 0.00 3.79
704 863 2.216898 GAATTCTGGGCTGATCGAAGG 58.783 52.381 0.00 0.00 0.00 3.46
705 864 1.500474 ATTCTGGGCTGATCGAAGGA 58.500 50.000 0.00 0.00 0.00 3.36
706 865 0.826715 TTCTGGGCTGATCGAAGGAG 59.173 55.000 0.00 0.00 0.00 3.69
707 866 1.227497 CTGGGCTGATCGAAGGAGC 60.227 63.158 5.37 5.37 0.00 4.70
710 869 4.116878 GCTGATCGAAGGAGCCAC 57.883 61.111 0.00 0.00 0.00 5.01
711 870 1.522580 GCTGATCGAAGGAGCCACC 60.523 63.158 0.00 0.00 39.35 4.61
712 871 1.900351 CTGATCGAAGGAGCCACCA 59.100 57.895 0.00 0.00 42.04 4.17
713 872 0.250234 CTGATCGAAGGAGCCACCAA 59.750 55.000 0.00 0.00 42.04 3.67
714 873 0.250234 TGATCGAAGGAGCCACCAAG 59.750 55.000 0.00 0.00 42.04 3.61
715 874 0.537188 GATCGAAGGAGCCACCAAGA 59.463 55.000 0.00 0.00 42.04 3.02
716 875 0.250513 ATCGAAGGAGCCACCAAGAC 59.749 55.000 0.00 0.00 42.04 3.01
717 876 1.118965 TCGAAGGAGCCACCAAGACA 61.119 55.000 0.47 0.00 42.04 3.41
718 877 0.951040 CGAAGGAGCCACCAAGACAC 60.951 60.000 0.47 0.00 42.04 3.67
719 878 0.951040 GAAGGAGCCACCAAGACACG 60.951 60.000 0.47 0.00 42.04 4.49
720 879 1.407656 AAGGAGCCACCAAGACACGA 61.408 55.000 0.00 0.00 42.04 4.35
721 880 1.668151 GGAGCCACCAAGACACGAC 60.668 63.158 0.00 0.00 38.79 4.34
722 881 2.022129 GAGCCACCAAGACACGACG 61.022 63.158 0.00 0.00 0.00 5.12
723 882 2.028484 GCCACCAAGACACGACGA 59.972 61.111 0.00 0.00 0.00 4.20
724 883 2.022129 GCCACCAAGACACGACGAG 61.022 63.158 0.00 0.00 0.00 4.18
725 884 1.362717 CCACCAAGACACGACGAGT 59.637 57.895 0.00 0.00 0.00 4.18
726 885 0.249322 CCACCAAGACACGACGAGTT 60.249 55.000 0.00 0.00 0.00 3.01
727 886 0.852777 CACCAAGACACGACGAGTTG 59.147 55.000 0.00 0.00 0.00 3.16
728 887 0.249322 ACCAAGACACGACGAGTTGG 60.249 55.000 12.74 12.74 42.89 3.77
729 888 0.249322 CCAAGACACGACGAGTTGGT 60.249 55.000 0.00 0.00 34.19 3.67
730 889 0.852777 CAAGACACGACGAGTTGGTG 59.147 55.000 0.00 6.77 37.67 4.17
731 890 0.249322 AAGACACGACGAGTTGGTGG 60.249 55.000 0.00 0.00 36.02 4.61
732 891 1.105167 AGACACGACGAGTTGGTGGA 61.105 55.000 0.00 0.00 36.02 4.02
733 892 0.038526 GACACGACGAGTTGGTGGAT 60.039 55.000 0.00 0.00 36.02 3.41
734 893 0.391597 ACACGACGAGTTGGTGGATT 59.608 50.000 0.00 0.00 36.02 3.01
735 894 1.202604 ACACGACGAGTTGGTGGATTT 60.203 47.619 0.00 0.00 36.02 2.17
736 895 2.036217 ACACGACGAGTTGGTGGATTTA 59.964 45.455 0.00 0.00 36.02 1.40
737 896 3.259064 CACGACGAGTTGGTGGATTTAT 58.741 45.455 0.00 0.00 0.00 1.40
738 897 4.082081 ACACGACGAGTTGGTGGATTTATA 60.082 41.667 0.00 0.00 36.02 0.98
739 898 4.865925 CACGACGAGTTGGTGGATTTATAA 59.134 41.667 0.00 0.00 0.00 0.98
740 899 5.349270 CACGACGAGTTGGTGGATTTATAAA 59.651 40.000 0.00 0.00 0.00 1.40
741 900 5.933463 ACGACGAGTTGGTGGATTTATAAAA 59.067 36.000 0.00 0.00 0.00 1.52
742 901 6.427547 ACGACGAGTTGGTGGATTTATAAAAA 59.572 34.615 0.00 0.00 0.00 1.94
743 902 6.959311 CGACGAGTTGGTGGATTTATAAAAAG 59.041 38.462 1.21 0.00 0.00 2.27
744 903 7.360607 CGACGAGTTGGTGGATTTATAAAAAGT 60.361 37.037 1.21 0.00 0.00 2.66
745 904 8.851541 ACGAGTTGGTGGATTTATAAAAAGTA 57.148 30.769 1.21 0.00 0.00 2.24
746 905 9.457436 ACGAGTTGGTGGATTTATAAAAAGTAT 57.543 29.630 1.21 0.00 0.00 2.12
770 929 8.846943 ATTAAAAGGGAACAAAATGATGAACC 57.153 30.769 0.00 0.00 0.00 3.62
771 930 4.890158 AAGGGAACAAAATGATGAACCC 57.110 40.909 0.00 0.00 38.47 4.11
772 931 3.855668 AGGGAACAAAATGATGAACCCA 58.144 40.909 0.00 0.00 39.61 4.51
773 932 4.230455 AGGGAACAAAATGATGAACCCAA 58.770 39.130 0.00 0.00 39.61 4.12
774 933 4.845796 AGGGAACAAAATGATGAACCCAAT 59.154 37.500 0.00 0.00 39.61 3.16
775 934 6.022315 AGGGAACAAAATGATGAACCCAATA 58.978 36.000 0.00 0.00 39.61 1.90
776 935 6.070824 AGGGAACAAAATGATGAACCCAATAC 60.071 38.462 0.00 0.00 39.61 1.89
777 936 6.106003 GGAACAAAATGATGAACCCAATACC 58.894 40.000 0.00 0.00 0.00 2.73
778 937 6.295575 GGAACAAAATGATGAACCCAATACCA 60.296 38.462 0.00 0.00 0.00 3.25
779 938 6.872585 ACAAAATGATGAACCCAATACCAT 57.127 33.333 0.00 0.00 0.00 3.55
780 939 7.969690 ACAAAATGATGAACCCAATACCATA 57.030 32.000 0.00 0.00 0.00 2.74
781 940 8.372877 ACAAAATGATGAACCCAATACCATAA 57.627 30.769 0.00 0.00 0.00 1.90
782 941 8.257306 ACAAAATGATGAACCCAATACCATAAC 58.743 33.333 0.00 0.00 0.00 1.89
783 942 8.477256 CAAAATGATGAACCCAATACCATAACT 58.523 33.333 0.00 0.00 0.00 2.24
784 943 9.707957 AAAATGATGAACCCAATACCATAACTA 57.292 29.630 0.00 0.00 0.00 2.24
785 944 9.707957 AAATGATGAACCCAATACCATAACTAA 57.292 29.630 0.00 0.00 0.00 2.24
786 945 8.691661 ATGATGAACCCAATACCATAACTAAC 57.308 34.615 0.00 0.00 0.00 2.34
787 946 7.634718 TGATGAACCCAATACCATAACTAACA 58.365 34.615 0.00 0.00 0.00 2.41
847 1008 4.335647 CCGGCTGCACCTCCAACT 62.336 66.667 0.50 0.00 35.61 3.16
848 1009 2.743928 CGGCTGCACCTCCAACTC 60.744 66.667 0.50 0.00 35.61 3.01
849 1010 2.360475 GGCTGCACCTCCAACTCC 60.360 66.667 0.50 0.00 34.51 3.85
850 1011 2.431683 GCTGCACCTCCAACTCCA 59.568 61.111 0.00 0.00 0.00 3.86
853 1014 0.890996 CTGCACCTCCAACTCCAACC 60.891 60.000 0.00 0.00 0.00 3.77
854 1015 1.352622 TGCACCTCCAACTCCAACCT 61.353 55.000 0.00 0.00 0.00 3.50
855 1016 0.890996 GCACCTCCAACTCCAACCTG 60.891 60.000 0.00 0.00 0.00 4.00
959 1124 0.747852 CTACTCTTCGGCCCTTCCTC 59.252 60.000 0.00 0.00 0.00 3.71
1327 1501 1.142748 GGAGGTGCGTGGATCTGAG 59.857 63.158 0.00 0.00 0.00 3.35
1328 1502 1.520342 GAGGTGCGTGGATCTGAGC 60.520 63.158 0.00 0.00 0.00 4.26
1395 1569 3.267597 ATCTGGTTTTGGCGCGTGC 62.268 57.895 13.78 13.78 41.71 5.34
1502 1676 2.961526 TGAACTGCCTCGTCCTAATC 57.038 50.000 0.00 0.00 0.00 1.75
1580 1754 3.465871 GGAGAAGCAGGTGATTCATCTC 58.534 50.000 10.40 0.61 42.42 2.75
1636 1810 5.123820 CGTTGACAATGATTATGGAACCTGT 59.876 40.000 0.75 0.00 0.00 4.00
1652 1826 7.701445 TGGAACCTGTTTAAATTTTTGCATTG 58.299 30.769 0.00 0.00 0.00 2.82
1712 1886 7.148306 GCCGACTCTCTAGATTTAGGAGATTAG 60.148 44.444 11.72 1.40 32.76 1.73
1767 1942 6.016610 TGGTCTCCTTTTACATGCTGTTTAAC 60.017 38.462 0.00 0.00 0.00 2.01
1770 1945 8.780249 GTCTCCTTTTACATGCTGTTTAACTTA 58.220 33.333 0.00 0.00 0.00 2.24
1772 1947 9.959749 CTCCTTTTACATGCTGTTTAACTTAAA 57.040 29.630 0.00 0.00 0.00 1.52
1812 1987 5.748630 TGAGACGACTGAATATGTATTGCAC 59.251 40.000 0.00 0.00 0.00 4.57
1813 1988 5.660460 AGACGACTGAATATGTATTGCACA 58.340 37.500 0.00 0.00 42.69 4.57
1816 1991 4.318050 CGACTGAATATGTATTGCACACGG 60.318 45.833 0.00 0.00 40.86 4.94
1817 1992 4.513442 ACTGAATATGTATTGCACACGGT 58.487 39.130 0.00 0.00 40.86 4.83
1820 1995 4.938226 TGAATATGTATTGCACACGGTGAA 59.062 37.500 16.29 0.00 40.86 3.18
1821 1996 5.412904 TGAATATGTATTGCACACGGTGAAA 59.587 36.000 16.29 6.63 40.86 2.69
1822 1997 5.888691 ATATGTATTGCACACGGTGAAAA 57.111 34.783 16.29 6.27 40.86 2.29
1823 1998 4.782019 ATGTATTGCACACGGTGAAAAT 57.218 36.364 16.29 12.72 40.86 1.82
1824 1999 5.888691 ATGTATTGCACACGGTGAAAATA 57.111 34.783 16.29 11.81 40.86 1.40
1825 2000 5.888691 TGTATTGCACACGGTGAAAATAT 57.111 34.783 16.29 4.28 34.47 1.28
1826 2001 6.260870 TGTATTGCACACGGTGAAAATATT 57.739 33.333 16.29 0.00 34.47 1.28
1827 2002 6.682746 TGTATTGCACACGGTGAAAATATTT 58.317 32.000 16.29 0.00 34.47 1.40
1828 2003 6.584184 TGTATTGCACACGGTGAAAATATTTG 59.416 34.615 16.29 0.81 34.47 2.32
1838 2013 7.746034 CACGGTGAAAATATTTGATATCATCGG 59.254 37.037 25.56 16.18 0.00 4.18
1890 2065 6.823182 CAGAGGTTACACCATTGATAATGACA 59.177 38.462 3.24 0.00 41.95 3.58
1893 2068 8.415950 AGGTTACACCATTGATAATGACAAAA 57.584 30.769 3.24 0.00 41.95 2.44
1911 2086 7.004086 TGACAAAACATTCAGTTATCCTTCCT 58.996 34.615 0.00 0.00 40.26 3.36
1918 2093 6.986817 ACATTCAGTTATCCTTCCTTGTATCG 59.013 38.462 0.00 0.00 0.00 2.92
2038 2213 5.897377 ATACCTTGAATGGTGTTTACTGC 57.103 39.130 0.00 0.00 41.05 4.40
2062 2238 7.661437 TGCGCTAGGTTAGATATGAATCAAAAT 59.339 33.333 9.73 0.00 34.28 1.82
2315 2615 9.661563 ACGTTCTCAATTTGTAGATATACCAAA 57.338 29.630 0.00 0.00 0.00 3.28
2386 2687 8.589629 GCAAAAGTTGATGCATTCATACTTTAG 58.410 33.333 20.10 3.17 40.62 1.85
2397 2698 6.648725 GCATTCATACTTTAGATCTCCAGTCC 59.351 42.308 9.49 0.00 0.00 3.85
2455 2760 9.542462 TGTATGCTGGTTATACTTATCTTGTTC 57.458 33.333 0.00 0.00 33.29 3.18
2639 2944 9.646522 AATCAGTAGCAAATATCCCAAGTTTAT 57.353 29.630 0.00 0.00 0.00 1.40
2723 3028 2.161609 GGATGTTCCCACGTTGATTGAC 59.838 50.000 0.00 0.00 0.00 3.18
2758 3063 7.865889 ACATGCACTATAATTCATTGCAGATTG 59.134 33.333 9.74 6.86 45.80 2.67
2965 3271 7.306866 GCAAGAATAAAGTATCTGCCTTACTCG 60.307 40.741 0.00 0.00 0.00 4.18
2972 3278 7.636150 AAGTATCTGCCTTACTCGTAACTTA 57.364 36.000 0.00 0.00 0.00 2.24
2986 3292 8.290663 ACTCGTAACTTAGTTTGTATGTGAAC 57.709 34.615 1.94 0.00 0.00 3.18
3047 3353 4.835284 TCTGCTACATGTGGTGGAATTA 57.165 40.909 9.11 0.00 0.00 1.40
3107 3413 4.914983 TGTCTCAAATCTCATTTCTGCCT 58.085 39.130 0.00 0.00 0.00 4.75
3335 3641 7.862372 TGCTTTTCTTGATGTTTAGTTGTCATC 59.138 33.333 0.00 0.00 38.57 2.92
3501 3807 7.272037 ACCAAGTTTACGAGAACATTTCATT 57.728 32.000 0.00 0.00 31.94 2.57
3521 3827 7.250445 TCATTATGAGTACATGTGATTGTGC 57.750 36.000 9.11 0.00 37.87 4.57
3824 4130 4.201881 GGTATTTCTGCCACGGTATGTTTC 60.202 45.833 0.00 0.00 0.00 2.78
3828 4134 3.482436 TCTGCCACGGTATGTTTCTTTT 58.518 40.909 0.00 0.00 0.00 2.27
3854 4160 4.583073 TGCTGCTCATGCTATGATGAAAAT 59.417 37.500 0.00 0.00 38.85 1.82
3924 4230 8.746922 TGAGATTCATTTGCATTTTCTACAAC 57.253 30.769 0.00 0.00 0.00 3.32
3931 4237 5.493133 TTGCATTTTCTACAACTGACGTT 57.507 34.783 0.00 0.00 0.00 3.99
4303 4610 6.595326 CCATGTCACTTCTGCTGACTTATTTA 59.405 38.462 4.86 0.00 39.11 1.40
4372 4679 1.524621 CATTACAGGAGCTGGGGCG 60.525 63.158 0.00 0.00 44.37 6.13
4429 4736 1.848895 GGAGGGTGGTTGGGGTGTA 60.849 63.158 0.00 0.00 0.00 2.90
4521 4828 0.398318 GGAAGGAGAAGTGCAGTGGT 59.602 55.000 0.00 0.00 0.00 4.16
4582 4889 6.493115 TGAGATATTTGAACTTGGCTTTTGGA 59.507 34.615 0.00 0.00 0.00 3.53
4616 4923 8.596781 AAGTAGTGTGATGACTATTTAGAGGT 57.403 34.615 0.00 0.00 29.32 3.85
4646 4953 4.795268 TCGTCTGTTTCTCACTGATACAC 58.205 43.478 0.00 0.00 35.92 2.90
4694 5004 4.879197 TCATCTAGCTATGTCCATGGTG 57.121 45.455 12.58 0.00 0.00 4.17
4990 5302 3.128589 TCACACTCCTTGCTTTTGAACAC 59.871 43.478 0.00 0.00 0.00 3.32
5530 5847 4.539726 TGAATGATAAAGCCTGGCTCAAT 58.460 39.130 23.61 17.87 38.25 2.57
5538 5855 1.630369 AGCCTGGCTCAATACTTGTGA 59.370 47.619 17.22 0.00 30.62 3.58
5568 5885 5.011533 ACCTGATCTATGTCAGTTGCTATCC 59.988 44.000 0.00 0.00 43.22 2.59
6021 6338 8.328758 TGACATAAATTTCCAATACTCTCAGGT 58.671 33.333 0.00 0.00 0.00 4.00
6297 6614 6.106003 AGTCTTTTTACAGGCCAAAAGTTTG 58.894 36.000 19.83 5.33 39.84 2.93
6330 6647 8.088365 ACCTGGACAAAAGTTTTGCTTAATATC 58.912 33.333 24.86 14.17 36.17 1.63
6384 6701 9.672086 TTAAAATATTGAAAACCAGACAGAACG 57.328 29.630 0.00 0.00 0.00 3.95
6459 6780 4.458397 AGATGGATGTGACACATGGATTC 58.542 43.478 25.45 15.19 39.27 2.52
6544 6865 3.737774 GCACATGCTTCTTCAGTTTTTCC 59.262 43.478 0.00 0.00 38.21 3.13
6989 7312 3.250762 TGTTCTTTCTGCAGATTGAACCG 59.749 43.478 34.31 15.15 36.61 4.44
7339 7662 6.595682 TCCATCTGATTGAGGTTATTTCTCC 58.404 40.000 0.00 0.00 0.00 3.71
7494 7817 9.664332 AGATAGCCAAGCATAATCAATACTAAG 57.336 33.333 0.00 0.00 0.00 2.18
7495 7818 9.658799 GATAGCCAAGCATAATCAATACTAAGA 57.341 33.333 0.00 0.00 0.00 2.10
7539 7862 2.297033 GTCCTGTAAGTACCGGTGTTCA 59.703 50.000 19.93 8.35 33.02 3.18
7749 8072 3.374764 TCTTCAGGGCAAGCTGTATCTA 58.625 45.455 0.00 0.00 0.00 1.98
7874 8197 5.762179 TGTGGTGGAGTCTAAAATGAGAT 57.238 39.130 0.00 0.00 0.00 2.75
7897 8220 4.293648 TCACTGTGCCCACCGTCG 62.294 66.667 2.12 0.00 0.00 5.12
7920 8243 5.517411 CGCTACCTTTGATGACATTACGTTA 59.483 40.000 0.00 0.00 0.00 3.18
7952 8275 9.379791 AGTTATGTATGGTTAACTTACTGCTTC 57.620 33.333 5.42 1.69 35.63 3.86
8106 8429 8.673711 TCTACCGATTGTTTTATCTGGAAATTG 58.326 33.333 0.00 0.00 0.00 2.32
8259 8582 5.163754 CGCAAGCTACTTTTAGTATGGCTTT 60.164 40.000 9.37 0.00 39.00 3.51
8447 8770 1.883638 GCCTTGTGAGCAGTGGATGAA 60.884 52.381 0.00 0.00 0.00 2.57
8545 8869 6.698008 TTGATTGATTGATTGGATTAGCGT 57.302 33.333 0.00 0.00 0.00 5.07
8570 8894 3.046374 AGGATTTAGGCTTGACCGGTAT 58.954 45.455 7.34 0.00 46.52 2.73
8740 9066 3.614588 GCCTGAACTGTAACGTTTGAAC 58.385 45.455 5.91 0.00 0.00 3.18
8822 9149 1.600023 TTCCCGTACTTTGTTGCTGG 58.400 50.000 0.00 0.00 0.00 4.85
8858 9186 0.460459 GCCTCTCGCCTTGTAGTTCC 60.460 60.000 0.00 0.00 0.00 3.62
9042 9375 9.668497 ACTACTCCCTTTGTTTCTAAATATGTC 57.332 33.333 0.00 0.00 0.00 3.06
9043 9376 7.939784 ACTCCCTTTGTTTCTAAATATGTCC 57.060 36.000 0.00 0.00 0.00 4.02
9063 9401 7.496346 TGTCCTAGAAATTTCAGTATGGACT 57.504 36.000 27.65 10.67 41.20 3.85
9064 9402 8.603898 TGTCCTAGAAATTTCAGTATGGACTA 57.396 34.615 27.65 19.44 41.20 2.59
9065 9403 8.475639 TGTCCTAGAAATTTCAGTATGGACTAC 58.524 37.037 27.65 15.75 41.20 2.73
9066 9404 8.475639 GTCCTAGAAATTTCAGTATGGACTACA 58.524 37.037 24.36 5.65 38.57 2.74
9067 9405 9.213777 TCCTAGAAATTTCAGTATGGACTACAT 57.786 33.333 19.99 0.00 43.68 2.29
9071 9409 9.784531 AGAAATTTCAGTATGGACTACATATGG 57.215 33.333 19.99 0.00 43.55 2.74
9072 9410 9.778741 GAAATTTCAGTATGGACTACATATGGA 57.221 33.333 13.40 0.00 43.55 3.41
9074 9412 9.730705 AATTTCAGTATGGACTACATATGGATG 57.269 33.333 7.80 0.00 43.55 3.51
9075 9413 7.855784 TTCAGTATGGACTACATATGGATGT 57.144 36.000 7.80 2.54 43.55 3.06
9076 9414 8.950007 TTCAGTATGGACTACATATGGATGTA 57.050 34.615 7.80 0.00 43.55 2.29
9077 9415 8.349568 TCAGTATGGACTACATATGGATGTAC 57.650 38.462 7.80 4.19 43.55 2.90
9078 9416 7.947890 TCAGTATGGACTACATATGGATGTACA 59.052 37.037 7.80 9.62 43.55 2.90
9079 9417 8.753133 CAGTATGGACTACATATGGATGTACAT 58.247 37.037 19.43 19.43 45.77 2.29
9080 9418 9.990868 AGTATGGACTACATATGGATGTACATA 57.009 33.333 18.04 18.04 44.77 2.29
9083 9421 8.349568 TGGACTACATATGGATGTACATAGAC 57.650 38.462 8.71 3.10 44.77 2.59
9084 9422 7.947890 TGGACTACATATGGATGTACATAGACA 59.052 37.037 8.71 8.94 44.77 3.41
9085 9423 8.972127 GGACTACATATGGATGTACATAGACAT 58.028 37.037 8.71 15.12 44.77 3.06
9115 9453 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
9116 9454 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
9117 9455 4.757149 GTGTAGGTTCACTCATTTTGCTCT 59.243 41.667 0.00 0.00 35.68 4.09
9118 9456 4.756642 TGTAGGTTCACTCATTTTGCTCTG 59.243 41.667 0.00 0.00 0.00 3.35
9119 9457 3.825328 AGGTTCACTCATTTTGCTCTGT 58.175 40.909 0.00 0.00 0.00 3.41
9120 9458 4.973168 AGGTTCACTCATTTTGCTCTGTA 58.027 39.130 0.00 0.00 0.00 2.74
9121 9459 5.564550 AGGTTCACTCATTTTGCTCTGTAT 58.435 37.500 0.00 0.00 0.00 2.29
9122 9460 5.413833 AGGTTCACTCATTTTGCTCTGTATG 59.586 40.000 0.00 0.00 0.00 2.39
9123 9461 5.182001 GGTTCACTCATTTTGCTCTGTATGT 59.818 40.000 0.00 0.00 0.00 2.29
9124 9462 6.371548 GGTTCACTCATTTTGCTCTGTATGTA 59.628 38.462 0.00 0.00 0.00 2.29
9125 9463 7.413438 GGTTCACTCATTTTGCTCTGTATGTAG 60.413 40.741 0.00 0.00 0.00 2.74
9126 9464 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
9127 9465 7.836842 TCACTCATTTTGCTCTGTATGTAGTA 58.163 34.615 0.00 0.00 0.00 1.82
9128 9466 8.478066 TCACTCATTTTGCTCTGTATGTAGTAT 58.522 33.333 0.00 0.00 0.00 2.12
9129 9467 9.750125 CACTCATTTTGCTCTGTATGTAGTATA 57.250 33.333 0.00 0.00 0.00 1.47
9132 9470 9.208022 TCATTTTGCTCTGTATGTAGTATATGC 57.792 33.333 0.00 0.00 0.00 3.14
9133 9471 9.212641 CATTTTGCTCTGTATGTAGTATATGCT 57.787 33.333 0.00 0.00 0.00 3.79
9137 9475 9.914131 TTGCTCTGTATGTAGTATATGCTAAAG 57.086 33.333 1.73 0.00 0.00 1.85
9138 9476 9.078990 TGCTCTGTATGTAGTATATGCTAAAGT 57.921 33.333 1.73 0.00 0.00 2.66
9139 9477 9.915629 GCTCTGTATGTAGTATATGCTAAAGTT 57.084 33.333 1.73 0.00 0.00 2.66
9163 9501 9.177304 GTTTTTAAAAGGTCTTATTCAGGAACG 57.823 33.333 0.14 0.00 0.00 3.95
9164 9502 7.443259 TTTAAAAGGTCTTATTCAGGAACGG 57.557 36.000 0.00 0.00 0.00 4.44
9165 9503 4.903045 AAAGGTCTTATTCAGGAACGGA 57.097 40.909 0.00 0.00 0.00 4.69
9166 9504 4.473477 AAGGTCTTATTCAGGAACGGAG 57.527 45.455 0.00 0.00 31.97 4.63
9167 9505 2.766828 AGGTCTTATTCAGGAACGGAGG 59.233 50.000 0.00 0.00 31.97 4.30
9168 9506 2.158943 GGTCTTATTCAGGAACGGAGGG 60.159 54.545 0.00 0.00 31.97 4.30
9169 9507 2.764572 GTCTTATTCAGGAACGGAGGGA 59.235 50.000 0.00 0.00 31.97 4.20
9170 9508 3.031736 TCTTATTCAGGAACGGAGGGAG 58.968 50.000 0.00 0.00 31.97 4.30
9171 9509 2.544844 TATTCAGGAACGGAGGGAGT 57.455 50.000 0.00 0.00 31.97 3.85
9172 9510 2.544844 ATTCAGGAACGGAGGGAGTA 57.455 50.000 0.00 0.00 31.97 2.59
9173 9511 1.848652 TTCAGGAACGGAGGGAGTAG 58.151 55.000 0.00 0.00 31.97 2.57
9174 9512 0.702902 TCAGGAACGGAGGGAGTAGT 59.297 55.000 0.00 0.00 0.00 2.73
9175 9513 1.076677 TCAGGAACGGAGGGAGTAGTT 59.923 52.381 0.00 0.00 0.00 2.24
9176 9514 1.900486 CAGGAACGGAGGGAGTAGTTT 59.100 52.381 0.00 0.00 0.00 2.66
9177 9515 1.900486 AGGAACGGAGGGAGTAGTTTG 59.100 52.381 0.00 0.00 0.00 2.93
9178 9516 1.675116 GGAACGGAGGGAGTAGTTTGC 60.675 57.143 0.00 0.00 0.00 3.68
9179 9517 1.275573 GAACGGAGGGAGTAGTTTGCT 59.724 52.381 0.00 0.00 0.00 3.91
9180 9518 1.349067 ACGGAGGGAGTAGTTTGCTT 58.651 50.000 0.00 0.00 0.00 3.91
9181 9519 2.532843 ACGGAGGGAGTAGTTTGCTTA 58.467 47.619 0.00 0.00 0.00 3.09
9182 9520 3.105283 ACGGAGGGAGTAGTTTGCTTAT 58.895 45.455 0.00 0.00 0.00 1.73
9183 9521 3.518303 ACGGAGGGAGTAGTTTGCTTATT 59.482 43.478 0.00 0.00 0.00 1.40
9184 9522 4.019591 ACGGAGGGAGTAGTTTGCTTATTT 60.020 41.667 0.00 0.00 0.00 1.40
9185 9523 4.571176 CGGAGGGAGTAGTTTGCTTATTTC 59.429 45.833 0.00 0.00 0.00 2.17
9186 9524 5.627040 CGGAGGGAGTAGTTTGCTTATTTCT 60.627 44.000 0.00 0.00 0.00 2.52
9187 9525 6.181190 GGAGGGAGTAGTTTGCTTATTTCTT 58.819 40.000 0.00 0.00 0.00 2.52
9188 9526 6.659668 GGAGGGAGTAGTTTGCTTATTTCTTT 59.340 38.462 0.00 0.00 0.00 2.52
9189 9527 7.176865 GGAGGGAGTAGTTTGCTTATTTCTTTT 59.823 37.037 0.00 0.00 0.00 2.27
9190 9528 8.478775 AGGGAGTAGTTTGCTTATTTCTTTTT 57.521 30.769 0.00 0.00 0.00 1.94
9191 9529 9.582648 AGGGAGTAGTTTGCTTATTTCTTTTTA 57.417 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.691252 GAGGACGGGTGGGGGATT 60.691 66.667 0.00 0.00 0.00 3.01
263 418 2.434884 CCCTTCGCACGCATCTGT 60.435 61.111 0.00 0.00 0.00 3.41
333 492 3.113043 GTTTAGTCCCTAGTCACCCCAT 58.887 50.000 0.00 0.00 0.00 4.00
461 620 3.620374 AGCATGTGATGACTTCGTCAATC 59.380 43.478 2.65 1.32 45.96 2.67
462 621 3.603532 AGCATGTGATGACTTCGTCAAT 58.396 40.909 2.65 0.00 45.96 2.57
463 622 2.995939 GAGCATGTGATGACTTCGTCAA 59.004 45.455 2.65 0.00 45.96 3.18
464 623 2.232208 AGAGCATGTGATGACTTCGTCA 59.768 45.455 0.00 0.00 46.90 4.35
465 624 2.857152 GAGAGCATGTGATGACTTCGTC 59.143 50.000 0.00 0.00 0.00 4.20
466 625 2.733542 CGAGAGCATGTGATGACTTCGT 60.734 50.000 0.00 0.00 0.00 3.85
467 626 1.851053 CGAGAGCATGTGATGACTTCG 59.149 52.381 0.00 0.00 0.00 3.79
468 627 2.886081 ACGAGAGCATGTGATGACTTC 58.114 47.619 0.00 0.00 0.00 3.01
469 628 3.445450 ACTACGAGAGCATGTGATGACTT 59.555 43.478 0.00 0.00 0.00 3.01
470 629 3.020274 ACTACGAGAGCATGTGATGACT 58.980 45.455 0.00 0.00 0.00 3.41
471 630 3.367607 GACTACGAGAGCATGTGATGAC 58.632 50.000 0.00 0.00 0.00 3.06
472 631 2.032178 CGACTACGAGAGCATGTGATGA 59.968 50.000 0.00 0.00 42.66 2.92
473 632 2.032178 TCGACTACGAGAGCATGTGATG 59.968 50.000 0.00 0.00 43.81 3.07
474 633 2.289565 TCGACTACGAGAGCATGTGAT 58.710 47.619 0.00 0.00 43.81 3.06
475 634 1.734163 TCGACTACGAGAGCATGTGA 58.266 50.000 0.00 0.00 43.81 3.58
494 653 5.334105 CGTTTCGTGAGGAAGATGTTTTCAT 60.334 40.000 0.00 0.00 43.99 2.57
495 654 4.025229 CGTTTCGTGAGGAAGATGTTTTCA 60.025 41.667 0.00 0.00 35.70 2.69
496 655 4.210537 TCGTTTCGTGAGGAAGATGTTTTC 59.789 41.667 0.00 0.00 35.70 2.29
497 656 4.124238 TCGTTTCGTGAGGAAGATGTTTT 58.876 39.130 0.00 0.00 35.70 2.43
498 657 3.724374 TCGTTTCGTGAGGAAGATGTTT 58.276 40.909 0.00 0.00 35.70 2.83
499 658 3.380479 TCGTTTCGTGAGGAAGATGTT 57.620 42.857 0.00 0.00 35.70 2.71
500 659 3.057734 GTTCGTTTCGTGAGGAAGATGT 58.942 45.455 0.00 0.00 35.70 3.06
501 660 3.057019 TGTTCGTTTCGTGAGGAAGATG 58.943 45.455 0.00 0.00 35.70 2.90
502 661 3.380479 TGTTCGTTTCGTGAGGAAGAT 57.620 42.857 0.00 0.00 35.70 2.40
503 662 2.875087 TGTTCGTTTCGTGAGGAAGA 57.125 45.000 0.00 0.00 35.70 2.87
504 663 2.090658 CGATGTTCGTTTCGTGAGGAAG 59.909 50.000 0.00 0.00 35.70 3.46
505 664 2.055838 CGATGTTCGTTTCGTGAGGAA 58.944 47.619 0.00 0.00 34.72 3.36
506 665 1.267533 TCGATGTTCGTTTCGTGAGGA 59.732 47.619 0.00 0.00 41.35 3.71
507 666 1.385743 GTCGATGTTCGTTTCGTGAGG 59.614 52.381 0.00 0.00 41.35 3.86
508 667 2.048498 TGTCGATGTTCGTTTCGTGAG 58.952 47.619 0.00 0.00 41.35 3.51
509 668 2.048498 CTGTCGATGTTCGTTTCGTGA 58.952 47.619 0.00 0.00 41.35 4.35
510 669 2.048498 TCTGTCGATGTTCGTTTCGTG 58.952 47.619 0.00 0.00 41.35 4.35
511 670 2.410785 TCTGTCGATGTTCGTTTCGT 57.589 45.000 0.00 0.00 41.35 3.85
512 671 3.711425 CTTTCTGTCGATGTTCGTTTCG 58.289 45.455 0.00 0.00 41.35 3.46
513 672 3.470562 GCTTTCTGTCGATGTTCGTTTC 58.529 45.455 0.00 0.00 41.35 2.78
514 673 2.223377 GGCTTTCTGTCGATGTTCGTTT 59.777 45.455 0.00 0.00 41.35 3.60
515 674 1.798813 GGCTTTCTGTCGATGTTCGTT 59.201 47.619 0.00 0.00 41.35 3.85
516 675 1.000955 AGGCTTTCTGTCGATGTTCGT 59.999 47.619 0.00 0.00 41.35 3.85
517 676 1.656095 GAGGCTTTCTGTCGATGTTCG 59.344 52.381 0.00 0.00 42.10 3.95
518 677 2.688507 TGAGGCTTTCTGTCGATGTTC 58.311 47.619 0.00 0.00 0.00 3.18
519 678 2.839486 TGAGGCTTTCTGTCGATGTT 57.161 45.000 0.00 0.00 0.00 2.71
520 679 2.839486 TTGAGGCTTTCTGTCGATGT 57.161 45.000 0.00 0.00 0.00 3.06
521 680 5.352569 ACTTATTTGAGGCTTTCTGTCGATG 59.647 40.000 0.00 0.00 0.00 3.84
522 681 5.491982 ACTTATTTGAGGCTTTCTGTCGAT 58.508 37.500 0.00 0.00 0.00 3.59
523 682 4.894784 ACTTATTTGAGGCTTTCTGTCGA 58.105 39.130 0.00 0.00 0.00 4.20
524 683 4.093556 GGACTTATTTGAGGCTTTCTGTCG 59.906 45.833 0.00 0.00 0.00 4.35
525 684 4.396478 GGGACTTATTTGAGGCTTTCTGTC 59.604 45.833 0.00 0.00 0.00 3.51
526 685 4.336280 GGGACTTATTTGAGGCTTTCTGT 58.664 43.478 0.00 0.00 0.00 3.41
527 686 3.696548 GGGGACTTATTTGAGGCTTTCTG 59.303 47.826 0.00 0.00 0.00 3.02
528 687 3.333680 TGGGGACTTATTTGAGGCTTTCT 59.666 43.478 0.00 0.00 0.00 2.52
529 688 3.697166 TGGGGACTTATTTGAGGCTTTC 58.303 45.455 0.00 0.00 0.00 2.62
530 689 3.825908 TGGGGACTTATTTGAGGCTTT 57.174 42.857 0.00 0.00 0.00 3.51
531 690 3.333680 TCTTGGGGACTTATTTGAGGCTT 59.666 43.478 0.00 0.00 0.00 4.35
532 691 2.919602 TCTTGGGGACTTATTTGAGGCT 59.080 45.455 0.00 0.00 0.00 4.58
533 692 3.366052 TCTTGGGGACTTATTTGAGGC 57.634 47.619 0.00 0.00 0.00 4.70
534 693 4.098501 GCATTCTTGGGGACTTATTTGAGG 59.901 45.833 0.00 0.00 0.00 3.86
535 694 4.706476 TGCATTCTTGGGGACTTATTTGAG 59.294 41.667 0.00 0.00 0.00 3.02
536 695 4.671831 TGCATTCTTGGGGACTTATTTGA 58.328 39.130 0.00 0.00 0.00 2.69
537 696 5.404466 TTGCATTCTTGGGGACTTATTTG 57.596 39.130 0.00 0.00 0.00 2.32
538 697 5.721000 TGATTGCATTCTTGGGGACTTATTT 59.279 36.000 9.81 0.00 0.00 1.40
539 698 5.271598 TGATTGCATTCTTGGGGACTTATT 58.728 37.500 9.81 0.00 0.00 1.40
540 699 4.870636 TGATTGCATTCTTGGGGACTTAT 58.129 39.130 9.81 0.00 0.00 1.73
541 700 4.272489 CTGATTGCATTCTTGGGGACTTA 58.728 43.478 9.81 0.00 0.00 2.24
542 701 3.094572 CTGATTGCATTCTTGGGGACTT 58.905 45.455 9.81 0.00 0.00 3.01
543 702 2.731572 CTGATTGCATTCTTGGGGACT 58.268 47.619 9.81 0.00 0.00 3.85
544 703 1.135721 GCTGATTGCATTCTTGGGGAC 59.864 52.381 9.81 0.00 42.31 4.46
545 704 1.477553 GCTGATTGCATTCTTGGGGA 58.522 50.000 9.81 0.00 42.31 4.81
556 715 0.248377 GGCTCGACATTGCTGATTGC 60.248 55.000 0.00 0.00 43.25 3.56
557 716 1.376543 AGGCTCGACATTGCTGATTG 58.623 50.000 0.00 0.00 0.00 2.67
558 717 2.484417 CCTAGGCTCGACATTGCTGATT 60.484 50.000 0.00 0.00 0.00 2.57
559 718 1.069823 CCTAGGCTCGACATTGCTGAT 59.930 52.381 0.00 0.00 0.00 2.90
560 719 0.461548 CCTAGGCTCGACATTGCTGA 59.538 55.000 0.00 0.00 0.00 4.26
561 720 0.461548 TCCTAGGCTCGACATTGCTG 59.538 55.000 2.96 0.00 0.00 4.41
562 721 0.461961 GTCCTAGGCTCGACATTGCT 59.538 55.000 2.96 0.00 0.00 3.91
563 722 0.461961 AGTCCTAGGCTCGACATTGC 59.538 55.000 2.96 0.00 0.00 3.56
564 723 2.166459 TCAAGTCCTAGGCTCGACATTG 59.834 50.000 2.96 14.40 0.00 2.82
565 724 2.457598 TCAAGTCCTAGGCTCGACATT 58.542 47.619 2.96 5.80 0.00 2.71
566 725 2.145397 TCAAGTCCTAGGCTCGACAT 57.855 50.000 2.96 2.70 0.00 3.06
567 726 1.544691 GTTCAAGTCCTAGGCTCGACA 59.455 52.381 2.96 0.00 0.00 4.35
568 727 1.135053 GGTTCAAGTCCTAGGCTCGAC 60.135 57.143 2.96 6.55 0.00 4.20
569 728 1.183549 GGTTCAAGTCCTAGGCTCGA 58.816 55.000 2.96 0.00 0.00 4.04
570 729 0.175989 GGGTTCAAGTCCTAGGCTCG 59.824 60.000 2.96 0.00 0.00 5.03
571 730 1.574263 AGGGTTCAAGTCCTAGGCTC 58.426 55.000 2.96 0.00 0.00 4.70
572 731 2.942604 TAGGGTTCAAGTCCTAGGCT 57.057 50.000 2.96 1.43 34.75 4.58
573 732 2.104963 CCATAGGGTTCAAGTCCTAGGC 59.895 54.545 2.96 0.00 38.82 3.93
574 733 2.706190 CCCATAGGGTTCAAGTCCTAGG 59.294 54.545 0.82 0.82 38.82 3.02
575 734 2.104963 GCCCATAGGGTTCAAGTCCTAG 59.895 54.545 3.68 0.00 46.51 3.02
576 735 2.124411 GCCCATAGGGTTCAAGTCCTA 58.876 52.381 3.68 0.00 46.51 2.94
577 736 0.919710 GCCCATAGGGTTCAAGTCCT 59.080 55.000 3.68 0.00 46.51 3.85
578 737 0.919710 AGCCCATAGGGTTCAAGTCC 59.080 55.000 3.68 0.00 46.51 3.85
579 738 1.559682 TCAGCCCATAGGGTTCAAGTC 59.440 52.381 3.68 0.00 46.51 3.01
580 739 1.668826 TCAGCCCATAGGGTTCAAGT 58.331 50.000 3.68 0.00 46.51 3.16
581 740 3.303351 AATCAGCCCATAGGGTTCAAG 57.697 47.619 3.68 0.00 46.51 3.02
582 741 3.011144 TGAAATCAGCCCATAGGGTTCAA 59.989 43.478 3.68 0.00 46.51 2.69
583 742 2.580322 TGAAATCAGCCCATAGGGTTCA 59.420 45.455 3.68 2.75 46.51 3.18
584 743 2.952310 GTGAAATCAGCCCATAGGGTTC 59.048 50.000 3.68 0.11 46.51 3.62
585 744 2.358195 GGTGAAATCAGCCCATAGGGTT 60.358 50.000 3.68 0.00 46.51 4.11
586 745 1.215423 GGTGAAATCAGCCCATAGGGT 59.785 52.381 3.68 0.00 46.51 4.34
588 747 2.734755 TGGTGAAATCAGCCCATAGG 57.265 50.000 9.87 0.00 43.22 2.57
589 748 3.748048 CGTATGGTGAAATCAGCCCATAG 59.252 47.826 11.15 5.00 43.22 2.23
590 749 3.389656 TCGTATGGTGAAATCAGCCCATA 59.610 43.478 9.87 8.87 43.22 2.74
591 750 2.172505 TCGTATGGTGAAATCAGCCCAT 59.827 45.455 9.87 9.74 43.22 4.00
592 751 1.557371 TCGTATGGTGAAATCAGCCCA 59.443 47.619 9.87 3.00 43.22 5.36
593 752 2.325583 TCGTATGGTGAAATCAGCCC 57.674 50.000 9.87 0.00 43.22 5.19
594 753 3.181500 GGTTTCGTATGGTGAAATCAGCC 60.181 47.826 9.87 3.24 43.22 4.85
595 754 3.689649 AGGTTTCGTATGGTGAAATCAGC 59.310 43.478 5.68 5.68 38.59 4.26
596 755 6.978343 TTAGGTTTCGTATGGTGAAATCAG 57.022 37.500 2.05 0.00 38.59 2.90
597 756 7.106890 TCATTAGGTTTCGTATGGTGAAATCA 58.893 34.615 2.05 0.00 38.59 2.57
598 757 7.548196 TCATTAGGTTTCGTATGGTGAAATC 57.452 36.000 0.00 0.00 37.62 2.17
599 758 7.993183 AGATCATTAGGTTTCGTATGGTGAAAT 59.007 33.333 0.00 0.00 37.62 2.17
600 759 7.279981 CAGATCATTAGGTTTCGTATGGTGAAA 59.720 37.037 0.00 0.00 33.18 2.69
601 760 6.761242 CAGATCATTAGGTTTCGTATGGTGAA 59.239 38.462 0.00 0.00 0.00 3.18
602 761 6.097696 TCAGATCATTAGGTTTCGTATGGTGA 59.902 38.462 0.00 0.00 0.00 4.02
603 762 6.280643 TCAGATCATTAGGTTTCGTATGGTG 58.719 40.000 0.00 0.00 0.00 4.17
604 763 6.479972 TCAGATCATTAGGTTTCGTATGGT 57.520 37.500 0.00 0.00 0.00 3.55
605 764 5.406780 GCTCAGATCATTAGGTTTCGTATGG 59.593 44.000 0.00 0.00 0.00 2.74
606 765 6.219473 AGCTCAGATCATTAGGTTTCGTATG 58.781 40.000 0.00 0.00 0.00 2.39
607 766 6.412362 AGCTCAGATCATTAGGTTTCGTAT 57.588 37.500 0.00 0.00 0.00 3.06
608 767 5.854010 AGCTCAGATCATTAGGTTTCGTA 57.146 39.130 0.00 0.00 0.00 3.43
609 768 4.744795 AGCTCAGATCATTAGGTTTCGT 57.255 40.909 0.00 0.00 0.00 3.85
610 769 4.677378 CGTAGCTCAGATCATTAGGTTTCG 59.323 45.833 0.00 0.93 0.00 3.46
611 770 5.833082 TCGTAGCTCAGATCATTAGGTTTC 58.167 41.667 0.00 0.00 0.00 2.78
612 771 5.854010 TCGTAGCTCAGATCATTAGGTTT 57.146 39.130 0.00 0.00 0.00 3.27
613 772 5.536538 TGATCGTAGCTCAGATCATTAGGTT 59.463 40.000 22.57 0.00 45.61 3.50
614 773 5.073428 TGATCGTAGCTCAGATCATTAGGT 58.927 41.667 22.57 0.00 45.61 3.08
615 774 5.635417 TGATCGTAGCTCAGATCATTAGG 57.365 43.478 22.57 0.00 45.61 2.69
621 780 3.550561 CGAACTGATCGTAGCTCAGATC 58.449 50.000 18.97 18.97 46.52 2.75
622 781 3.617540 CGAACTGATCGTAGCTCAGAT 57.382 47.619 6.89 5.33 46.52 2.90
633 792 2.035961 TGCAGGTATAGGCGAACTGATC 59.964 50.000 6.36 0.00 0.00 2.92
634 793 2.039418 TGCAGGTATAGGCGAACTGAT 58.961 47.619 6.36 0.00 0.00 2.90
635 794 1.480789 TGCAGGTATAGGCGAACTGA 58.519 50.000 6.36 0.00 0.00 3.41
636 795 2.309528 TTGCAGGTATAGGCGAACTG 57.690 50.000 0.00 0.00 0.00 3.16
637 796 2.224305 GGATTGCAGGTATAGGCGAACT 60.224 50.000 0.00 0.00 0.00 3.01
638 797 2.143925 GGATTGCAGGTATAGGCGAAC 58.856 52.381 0.00 0.00 0.00 3.95
639 798 2.047061 AGGATTGCAGGTATAGGCGAA 58.953 47.619 0.00 0.00 0.00 4.70
640 799 1.344438 CAGGATTGCAGGTATAGGCGA 59.656 52.381 0.00 0.00 0.00 5.54
641 800 1.800805 CAGGATTGCAGGTATAGGCG 58.199 55.000 0.00 0.00 0.00 5.52
653 812 4.384056 CAGGGAGTAGTATTGCAGGATTG 58.616 47.826 0.00 0.00 0.00 2.67
654 813 3.181450 GCAGGGAGTAGTATTGCAGGATT 60.181 47.826 0.00 0.00 34.99 3.01
655 814 2.370189 GCAGGGAGTAGTATTGCAGGAT 59.630 50.000 0.00 0.00 34.99 3.24
656 815 1.762957 GCAGGGAGTAGTATTGCAGGA 59.237 52.381 0.00 0.00 34.99 3.86
657 816 1.486310 TGCAGGGAGTAGTATTGCAGG 59.514 52.381 0.00 0.00 39.61 4.85
658 817 2.988010 TGCAGGGAGTAGTATTGCAG 57.012 50.000 0.00 0.00 39.61 4.41
660 819 4.274459 CAGAAATGCAGGGAGTAGTATTGC 59.726 45.833 0.00 0.00 35.42 3.56
661 820 4.818546 CCAGAAATGCAGGGAGTAGTATTG 59.181 45.833 0.00 0.00 0.00 1.90
662 821 4.721776 TCCAGAAATGCAGGGAGTAGTATT 59.278 41.667 0.00 0.00 0.00 1.89
663 822 4.298626 TCCAGAAATGCAGGGAGTAGTAT 58.701 43.478 0.00 0.00 0.00 2.12
664 823 3.719871 TCCAGAAATGCAGGGAGTAGTA 58.280 45.455 0.00 0.00 0.00 1.82
665 824 2.551270 TCCAGAAATGCAGGGAGTAGT 58.449 47.619 0.00 0.00 0.00 2.73
666 825 3.634397 TTCCAGAAATGCAGGGAGTAG 57.366 47.619 0.00 0.00 0.00 2.57
667 826 4.228210 AGAATTCCAGAAATGCAGGGAGTA 59.772 41.667 0.65 0.00 0.00 2.59
668 827 3.011032 AGAATTCCAGAAATGCAGGGAGT 59.989 43.478 0.65 0.00 0.00 3.85
669 828 3.380637 CAGAATTCCAGAAATGCAGGGAG 59.619 47.826 0.65 0.00 0.00 4.30
670 829 3.359033 CAGAATTCCAGAAATGCAGGGA 58.641 45.455 0.65 0.00 0.00 4.20
671 830 2.429610 CCAGAATTCCAGAAATGCAGGG 59.570 50.000 0.65 0.00 27.88 4.45
672 831 2.429610 CCCAGAATTCCAGAAATGCAGG 59.570 50.000 0.65 0.00 30.74 4.85
673 832 2.159142 GCCCAGAATTCCAGAAATGCAG 60.159 50.000 0.65 0.00 0.00 4.41
674 833 1.826720 GCCCAGAATTCCAGAAATGCA 59.173 47.619 0.65 0.00 0.00 3.96
675 834 2.105766 AGCCCAGAATTCCAGAAATGC 58.894 47.619 0.65 0.00 0.00 3.56
676 835 3.359033 TCAGCCCAGAATTCCAGAAATG 58.641 45.455 0.65 0.00 0.00 2.32
677 836 3.744940 TCAGCCCAGAATTCCAGAAAT 57.255 42.857 0.65 0.00 0.00 2.17
678 837 3.624777 GATCAGCCCAGAATTCCAGAAA 58.375 45.455 0.65 0.00 0.00 2.52
679 838 2.420547 CGATCAGCCCAGAATTCCAGAA 60.421 50.000 0.65 0.00 0.00 3.02
680 839 1.139654 CGATCAGCCCAGAATTCCAGA 59.860 52.381 0.65 0.00 0.00 3.86
681 840 1.139654 TCGATCAGCCCAGAATTCCAG 59.860 52.381 0.65 0.00 0.00 3.86
682 841 1.203237 TCGATCAGCCCAGAATTCCA 58.797 50.000 0.65 0.00 0.00 3.53
683 842 2.216898 CTTCGATCAGCCCAGAATTCC 58.783 52.381 0.65 0.00 0.00 3.01
684 843 2.158900 TCCTTCGATCAGCCCAGAATTC 60.159 50.000 0.00 0.00 0.00 2.17
685 844 1.839994 TCCTTCGATCAGCCCAGAATT 59.160 47.619 0.00 0.00 0.00 2.17
686 845 1.415659 CTCCTTCGATCAGCCCAGAAT 59.584 52.381 0.00 0.00 0.00 2.40
687 846 0.826715 CTCCTTCGATCAGCCCAGAA 59.173 55.000 0.00 0.00 0.00 3.02
688 847 1.680522 GCTCCTTCGATCAGCCCAGA 61.681 60.000 0.00 0.00 0.00 3.86
689 848 1.227497 GCTCCTTCGATCAGCCCAG 60.227 63.158 0.00 0.00 0.00 4.45
690 849 2.735772 GGCTCCTTCGATCAGCCCA 61.736 63.158 15.70 0.00 46.20 5.36
691 850 2.110006 GGCTCCTTCGATCAGCCC 59.890 66.667 15.70 0.00 46.20 5.19
693 852 1.522580 GGTGGCTCCTTCGATCAGC 60.523 63.158 0.00 2.84 0.00 4.26
694 853 0.250234 TTGGTGGCTCCTTCGATCAG 59.750 55.000 7.19 0.00 37.07 2.90
695 854 0.250234 CTTGGTGGCTCCTTCGATCA 59.750 55.000 7.19 0.00 37.07 2.92
696 855 0.537188 TCTTGGTGGCTCCTTCGATC 59.463 55.000 7.19 0.00 37.07 3.69
697 856 0.250513 GTCTTGGTGGCTCCTTCGAT 59.749 55.000 7.19 0.00 37.07 3.59
698 857 1.118965 TGTCTTGGTGGCTCCTTCGA 61.119 55.000 7.19 0.00 37.07 3.71
699 858 0.951040 GTGTCTTGGTGGCTCCTTCG 60.951 60.000 7.19 0.00 37.07 3.79
700 859 0.951040 CGTGTCTTGGTGGCTCCTTC 60.951 60.000 7.19 0.00 37.07 3.46
701 860 1.071471 CGTGTCTTGGTGGCTCCTT 59.929 57.895 7.19 0.00 37.07 3.36
702 861 1.837051 TCGTGTCTTGGTGGCTCCT 60.837 57.895 7.19 0.00 37.07 3.69
703 862 1.668151 GTCGTGTCTTGGTGGCTCC 60.668 63.158 0.00 0.00 0.00 4.70
704 863 2.022129 CGTCGTGTCTTGGTGGCTC 61.022 63.158 0.00 0.00 0.00 4.70
705 864 2.029073 CGTCGTGTCTTGGTGGCT 59.971 61.111 0.00 0.00 0.00 4.75
706 865 2.022129 CTCGTCGTGTCTTGGTGGC 61.022 63.158 0.00 0.00 0.00 5.01
707 866 0.249322 AACTCGTCGTGTCTTGGTGG 60.249 55.000 0.00 0.00 0.00 4.61
708 867 0.852777 CAACTCGTCGTGTCTTGGTG 59.147 55.000 0.00 0.00 0.00 4.17
709 868 0.249322 CCAACTCGTCGTGTCTTGGT 60.249 55.000 9.13 0.00 0.00 3.67
710 869 0.249322 ACCAACTCGTCGTGTCTTGG 60.249 55.000 13.87 13.87 37.89 3.61
711 870 0.852777 CACCAACTCGTCGTGTCTTG 59.147 55.000 0.00 0.00 0.00 3.02
712 871 0.249322 CCACCAACTCGTCGTGTCTT 60.249 55.000 0.00 0.00 0.00 3.01
713 872 1.105167 TCCACCAACTCGTCGTGTCT 61.105 55.000 0.00 0.00 0.00 3.41
714 873 0.038526 ATCCACCAACTCGTCGTGTC 60.039 55.000 0.00 0.00 0.00 3.67
715 874 0.391597 AATCCACCAACTCGTCGTGT 59.608 50.000 0.00 0.00 0.00 4.49
716 875 1.508632 AAATCCACCAACTCGTCGTG 58.491 50.000 0.00 0.00 0.00 4.35
717 876 3.604875 ATAAATCCACCAACTCGTCGT 57.395 42.857 0.00 0.00 0.00 4.34
718 877 6.411630 TTTTATAAATCCACCAACTCGTCG 57.588 37.500 0.00 0.00 0.00 5.12
719 878 7.813645 ACTTTTTATAAATCCACCAACTCGTC 58.186 34.615 0.00 0.00 0.00 4.20
720 879 7.754851 ACTTTTTATAAATCCACCAACTCGT 57.245 32.000 0.00 0.00 0.00 4.18
744 903 9.936759 GGTTCATCATTTTGTTCCCTTTTAATA 57.063 29.630 0.00 0.00 0.00 0.98
745 904 7.882791 GGGTTCATCATTTTGTTCCCTTTTAAT 59.117 33.333 0.00 0.00 32.28 1.40
746 905 7.147479 TGGGTTCATCATTTTGTTCCCTTTTAA 60.147 33.333 0.00 0.00 34.34 1.52
747 906 6.327626 TGGGTTCATCATTTTGTTCCCTTTTA 59.672 34.615 0.00 0.00 34.34 1.52
748 907 5.131809 TGGGTTCATCATTTTGTTCCCTTTT 59.868 36.000 0.00 0.00 34.34 2.27
749 908 4.657969 TGGGTTCATCATTTTGTTCCCTTT 59.342 37.500 0.00 0.00 34.34 3.11
750 909 4.230455 TGGGTTCATCATTTTGTTCCCTT 58.770 39.130 0.00 0.00 34.34 3.95
751 910 3.855668 TGGGTTCATCATTTTGTTCCCT 58.144 40.909 0.00 0.00 34.34 4.20
752 911 4.615588 TTGGGTTCATCATTTTGTTCCC 57.384 40.909 0.00 0.00 34.06 3.97
753 912 6.106003 GGTATTGGGTTCATCATTTTGTTCC 58.894 40.000 0.00 0.00 0.00 3.62
754 913 6.696411 TGGTATTGGGTTCATCATTTTGTTC 58.304 36.000 0.00 0.00 0.00 3.18
755 914 6.678568 TGGTATTGGGTTCATCATTTTGTT 57.321 33.333 0.00 0.00 0.00 2.83
756 915 6.872585 ATGGTATTGGGTTCATCATTTTGT 57.127 33.333 0.00 0.00 0.00 2.83
757 916 8.477256 AGTTATGGTATTGGGTTCATCATTTTG 58.523 33.333 0.00 0.00 0.00 2.44
758 917 8.608185 AGTTATGGTATTGGGTTCATCATTTT 57.392 30.769 0.00 0.00 0.00 1.82
759 918 9.707957 TTAGTTATGGTATTGGGTTCATCATTT 57.292 29.630 0.00 0.00 0.00 2.32
760 919 9.131791 GTTAGTTATGGTATTGGGTTCATCATT 57.868 33.333 0.00 0.00 0.00 2.57
761 920 8.278639 TGTTAGTTATGGTATTGGGTTCATCAT 58.721 33.333 0.00 0.00 0.00 2.45
762 921 7.634718 TGTTAGTTATGGTATTGGGTTCATCA 58.365 34.615 0.00 0.00 0.00 3.07
763 922 8.514330 TTGTTAGTTATGGTATTGGGTTCATC 57.486 34.615 0.00 0.00 0.00 2.92
764 923 8.887264 TTTGTTAGTTATGGTATTGGGTTCAT 57.113 30.769 0.00 0.00 0.00 2.57
765 924 8.707796 TTTTGTTAGTTATGGTATTGGGTTCA 57.292 30.769 0.00 0.00 0.00 3.18
847 1008 2.124529 TTGTGCGTGCAGGTTGGA 60.125 55.556 8.40 0.00 0.00 3.53
848 1009 2.026014 GTTGTGCGTGCAGGTTGG 59.974 61.111 8.40 0.00 0.00 3.77
849 1010 1.009675 GAGTTGTGCGTGCAGGTTG 60.010 57.895 8.40 0.00 0.00 3.77
850 1011 1.451207 TGAGTTGTGCGTGCAGGTT 60.451 52.632 8.40 0.00 0.00 3.50
853 1014 2.246397 CGTGAGTTGTGCGTGCAG 59.754 61.111 0.00 0.00 0.00 4.41
854 1015 3.935872 GCGTGAGTTGTGCGTGCA 61.936 61.111 0.00 0.00 0.00 4.57
855 1016 2.715864 AATGCGTGAGTTGTGCGTGC 62.716 55.000 0.00 0.00 0.00 5.34
937 1102 1.946475 GAAGGGCCGAAGAGTAGCGT 61.946 60.000 0.00 0.00 0.00 5.07
938 1103 1.227002 GAAGGGCCGAAGAGTAGCG 60.227 63.158 0.00 0.00 0.00 4.26
939 1104 1.144276 GGAAGGGCCGAAGAGTAGC 59.856 63.158 0.00 0.00 0.00 3.58
940 1105 0.747852 GAGGAAGGGCCGAAGAGTAG 59.252 60.000 0.00 0.00 43.43 2.57
941 1106 0.686769 GGAGGAAGGGCCGAAGAGTA 60.687 60.000 0.00 0.00 43.43 2.59
944 1109 2.687566 GGGAGGAAGGGCCGAAGA 60.688 66.667 0.00 0.00 43.43 2.87
959 1124 3.096852 GGAGTGGGGTTTAGATTTTGGG 58.903 50.000 0.00 0.00 0.00 4.12
1229 1403 2.345244 CGAGGCTGTGCTCCTTGT 59.655 61.111 0.00 0.00 33.24 3.16
1477 1651 1.363744 GACGAGGCAGTTCAATCCAG 58.636 55.000 0.00 0.00 0.00 3.86
1502 1676 3.548770 TGCAAAATCATAGCAGGAGAGG 58.451 45.455 0.00 0.00 33.75 3.69
1580 1754 0.179140 ACACACAAGCAAAACTGCGG 60.179 50.000 0.00 0.00 40.27 5.69
1591 1765 1.593196 ACAATCCGACCACACACAAG 58.407 50.000 0.00 0.00 0.00 3.16
1656 1830 4.523558 TGAACAACCATTTGATGAGCATCA 59.476 37.500 8.99 8.99 45.30 3.07
1661 1835 3.367703 GGCCTGAACAACCATTTGATGAG 60.368 47.826 0.00 0.00 36.48 2.90
1666 1840 2.758009 CAAGGCCTGAACAACCATTTG 58.242 47.619 5.69 0.00 38.83 2.32
1712 1886 4.095610 AGTTAAAGCGCGCATAAATGAAC 58.904 39.130 35.10 23.47 0.00 3.18
1772 1947 6.154706 AGTCGTCTCAACCCTAGTCATATTTT 59.845 38.462 0.00 0.00 0.00 1.82
1779 1954 2.434428 TCAGTCGTCTCAACCCTAGTC 58.566 52.381 0.00 0.00 0.00 2.59
1785 1960 6.292381 GCAATACATATTCAGTCGTCTCAACC 60.292 42.308 0.00 0.00 0.00 3.77
1791 1966 5.554510 CGTGTGCAATACATATTCAGTCGTC 60.555 44.000 0.00 0.00 42.24 4.20
1812 1987 7.746034 CCGATGATATCAAATATTTTCACCGTG 59.254 37.037 9.99 0.00 0.00 4.94
1813 1988 7.444183 ACCGATGATATCAAATATTTTCACCGT 59.556 33.333 9.99 3.44 0.00 4.83
1816 1991 9.599322 GACACCGATGATATCAAATATTTTCAC 57.401 33.333 9.99 0.00 0.00 3.18
1817 1992 9.559732 AGACACCGATGATATCAAATATTTTCA 57.440 29.630 9.99 0.35 0.00 2.69
1820 1995 8.786898 CCAAGACACCGATGATATCAAATATTT 58.213 33.333 9.99 0.00 0.00 1.40
1821 1996 8.156820 TCCAAGACACCGATGATATCAAATATT 58.843 33.333 9.99 0.00 0.00 1.28
1822 1997 7.679783 TCCAAGACACCGATGATATCAAATAT 58.320 34.615 9.99 0.00 0.00 1.28
1823 1998 7.061566 TCCAAGACACCGATGATATCAAATA 57.938 36.000 9.99 0.00 0.00 1.40
1824 1999 5.928976 TCCAAGACACCGATGATATCAAAT 58.071 37.500 9.99 0.00 0.00 2.32
1825 2000 5.351948 TCCAAGACACCGATGATATCAAA 57.648 39.130 9.99 0.00 0.00 2.69
1826 2001 5.299949 CATCCAAGACACCGATGATATCAA 58.700 41.667 9.99 0.00 36.33 2.57
1827 2002 4.262592 CCATCCAAGACACCGATGATATCA 60.263 45.833 8.10 8.10 36.33 2.15
1828 2003 4.021104 TCCATCCAAGACACCGATGATATC 60.021 45.833 0.00 0.00 36.33 1.63
1838 2013 3.126001 TGTCAACTCCATCCAAGACAC 57.874 47.619 0.00 0.00 31.72 3.67
1890 2065 7.839680 ACAAGGAAGGATAACTGAATGTTTT 57.160 32.000 0.00 0.00 39.89 2.43
1893 2068 6.986817 CGATACAAGGAAGGATAACTGAATGT 59.013 38.462 0.00 0.00 0.00 2.71
1911 2086 4.150980 CGCAAAACCTACAGAACGATACAA 59.849 41.667 0.00 0.00 0.00 2.41
1918 2093 1.069227 CAGGCGCAAAACCTACAGAAC 60.069 52.381 10.83 0.00 35.10 3.01
2038 2213 9.429359 AGATTTTGATTCATATCTAACCTAGCG 57.571 33.333 9.04 0.00 0.00 4.26
2062 2238 8.934697 AGTCAGGTACCATAAGCAAATATTAGA 58.065 33.333 15.94 0.00 0.00 2.10
2314 2614 7.938490 ACCATTATTTGCTTCAAAATGGAAGTT 59.062 29.630 20.90 4.92 40.96 2.66
2315 2615 7.452562 ACCATTATTTGCTTCAAAATGGAAGT 58.547 30.769 20.90 5.16 40.96 3.01
2386 2687 2.290847 TGCAGTGGGACTGGAGATC 58.709 57.895 5.90 0.00 46.01 2.75
2397 2698 2.281070 ACGAGCCAAGTGCAGTGG 60.281 61.111 11.38 11.38 44.83 4.00
2723 3028 2.910688 ATAGTGCATGTACCTTCCGG 57.089 50.000 10.59 0.00 0.00 5.14
2735 3040 7.337480 ACAATCTGCAATGAATTATAGTGCA 57.663 32.000 14.15 14.15 45.44 4.57
2943 3249 8.966194 GTTACGAGTAAGGCAGATACTTTATTC 58.034 37.037 0.00 0.00 33.85 1.75
2972 3278 7.299246 ACCTACAGTAGTTCACATACAAACT 57.701 36.000 6.84 0.00 39.07 2.66
2986 3292 7.068103 ACAAGATCTGAGATCAACCTACAGTAG 59.932 40.741 23.17 0.00 0.00 2.57
3047 3353 0.396974 TGTCCAAGGCAAGCAAAGGT 60.397 50.000 0.00 0.00 0.00 3.50
3335 3641 9.858247 GTGCATGCAATTTTTCATATAAGAATG 57.142 29.630 24.58 0.00 0.00 2.67
3501 3807 4.754322 ACGCACAATCACATGTACTCATA 58.246 39.130 0.00 0.00 32.47 2.15
3521 3827 8.800096 TCATATTATTAATTGCGCGAAATACG 57.200 30.769 13.93 0.00 45.66 3.06
3828 4134 3.949113 TCATCATAGCATGAGCAGCAAAA 59.051 39.130 0.00 0.00 43.53 2.44
3900 4206 8.976986 AGTTGTAGAAAATGCAAATGAATCTC 57.023 30.769 0.00 0.00 35.11 2.75
3915 4221 7.594015 GTGATCTCTTAACGTCAGTTGTAGAAA 59.406 37.037 0.00 0.00 41.35 2.52
3971 4277 5.067283 ACTGAACCAGTGAATTTGTTGGTAC 59.933 40.000 8.54 0.00 43.63 3.34
3978 4284 5.505173 ACAGAACTGAACCAGTGAATTTG 57.495 39.130 8.87 0.00 44.62 2.32
4181 4487 1.037579 ATAAAGCGGCAAAGGCTCCC 61.038 55.000 1.45 0.00 40.53 4.30
4372 4679 3.026694 ACCTCCTGATATTTTGCCTTGC 58.973 45.455 0.00 0.00 0.00 4.01
4429 4736 4.041815 GTCTTCTTCTTAACCCCCTCTTGT 59.958 45.833 0.00 0.00 0.00 3.16
4582 4889 6.773638 AGTCATCACACTACTTCTCCAAATT 58.226 36.000 0.00 0.00 0.00 1.82
4616 4923 4.950475 AGTGAGAAACAGACGAGATATGGA 59.050 41.667 0.00 0.00 0.00 3.41
4646 4953 2.688507 ACCTAATGAAGCAGTGACACG 58.311 47.619 0.00 0.00 0.00 4.49
4694 5004 2.422303 CATGATGACATGTGGCCCC 58.578 57.895 1.15 0.00 46.01 5.80
4799 5109 8.201554 TCCGATGACAGAATTAGAAAATCAAG 57.798 34.615 0.00 0.00 0.00 3.02
4819 5129 1.033746 CCAGGCATGTGCTTTCCGAT 61.034 55.000 4.84 0.00 41.70 4.18
4990 5302 8.899427 ATGAGGAACATAACATTGTAGATCAG 57.101 34.615 0.00 0.00 37.46 2.90
5058 5372 1.857217 CGAGAACGCATTGAGAGGATG 59.143 52.381 0.00 0.00 0.00 3.51
5080 5394 5.407502 AGAACTAAGTTTGTTTGCACCAAC 58.592 37.500 4.20 0.00 0.00 3.77
5087 5401 5.650543 ACCAGCAAGAACTAAGTTTGTTTG 58.349 37.500 4.20 1.59 0.00 2.93
5538 5855 7.831193 AGCAACTGACATAGATCAGGTAAAATT 59.169 33.333 7.63 0.00 45.11 1.82
5568 5885 1.630369 TGAGAGGAAGGGGTGTCAATG 59.370 52.381 0.00 0.00 0.00 2.82
5783 6100 9.647797 ACATTGAGATTACACGAATTTACTGTA 57.352 29.630 0.00 0.00 0.00 2.74
6013 6330 7.653713 ACGATATTAATAGCACAAACCTGAGAG 59.346 37.037 11.08 0.00 0.00 3.20
6021 6338 6.485313 CCCAGGAACGATATTAATAGCACAAA 59.515 38.462 11.08 0.00 0.00 2.83
6297 6614 5.977489 AAACTTTTGTCCAGGTAATAGCC 57.023 39.130 0.00 0.00 0.00 3.93
6330 6647 2.017049 CAGCCCTCTTTTACCGGATTG 58.983 52.381 9.46 0.00 0.00 2.67
6384 6701 9.884636 AGCCCAGAAAAATATTTGTATTTTACC 57.115 29.630 0.39 3.57 38.33 2.85
6989 7312 2.539750 GGCGGCAAAGAGATTTCGAATC 60.540 50.000 3.07 0.00 0.00 2.52
7043 7366 2.226330 TGGTTCCACAGAAAATGGACG 58.774 47.619 0.00 0.00 46.09 4.79
7339 7662 5.965334 GCAACACGTGAGGAACAAATATATG 59.035 40.000 25.01 2.00 0.00 1.78
7494 7817 5.695851 TTGAAATCCTCAGCAAAAGACTC 57.304 39.130 0.00 0.00 34.81 3.36
7495 7818 5.537674 ACATTGAAATCCTCAGCAAAAGACT 59.462 36.000 0.00 0.00 34.81 3.24
7539 7862 9.420118 TGGCCATCTTAAATGTCATACTTAATT 57.580 29.630 0.00 0.00 0.00 1.40
7749 8072 2.576615 GCTGTGGTTCCAAGAAGAAGT 58.423 47.619 0.00 0.00 0.00 3.01
7897 8220 5.796350 AACGTAATGTCATCAAAGGTAGC 57.204 39.130 0.00 0.00 0.00 3.58
7952 8275 1.336755 GGGTGTTGTTACCTGCACAAG 59.663 52.381 0.00 0.00 40.66 3.16
8106 8429 3.508744 ACCGATGAATTGATTGGCAAC 57.491 42.857 10.86 0.00 39.78 4.17
8259 8582 6.742109 ACACTTTACAGAGCTCGTTAACTTA 58.258 36.000 14.71 0.06 0.00 2.24
8447 8770 4.996434 GTGCACTCACTGCCCGCT 62.996 66.667 10.32 0.00 46.51 5.52
8545 8869 3.071023 CCGGTCAAGCCTAAATCCTATCA 59.929 47.826 0.00 0.00 34.25 2.15
8570 8894 9.303116 ACATTTTGTGGAATTAATACAGTGGTA 57.697 29.630 0.00 0.00 0.00 3.25
8740 9066 1.331756 GATAGCATCCAACAGCCAACG 59.668 52.381 0.00 0.00 0.00 4.10
8747 9073 1.069204 GCTCCGAGATAGCATCCAACA 59.931 52.381 0.00 0.00 39.83 3.33
8822 9149 1.272769 AGGCAGTAGTTCAGTCGTTCC 59.727 52.381 0.00 0.00 0.00 3.62
8858 9186 3.922171 AGAGACCCCAGCTCATAAAAG 57.078 47.619 0.00 0.00 34.85 2.27
9040 9373 8.475639 TGTAGTCCATACTGAAATTTCTAGGAC 58.524 37.037 24.30 24.30 42.43 3.85
9041 9374 8.603898 TGTAGTCCATACTGAAATTTCTAGGA 57.396 34.615 18.64 14.22 36.36 2.94
9080 9418 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
9094 9432 4.757149 AGAGCAAAATGAGTGAACCTACAC 59.243 41.667 0.00 0.00 40.60 2.90
9095 9433 4.756642 CAGAGCAAAATGAGTGAACCTACA 59.243 41.667 0.00 0.00 0.00 2.74
9096 9434 4.757149 ACAGAGCAAAATGAGTGAACCTAC 59.243 41.667 0.00 0.00 0.00 3.18
9097 9435 4.973168 ACAGAGCAAAATGAGTGAACCTA 58.027 39.130 0.00 0.00 0.00 3.08
9098 9436 3.825328 ACAGAGCAAAATGAGTGAACCT 58.175 40.909 0.00 0.00 0.00 3.50
9099 9437 5.182001 ACATACAGAGCAAAATGAGTGAACC 59.818 40.000 0.00 0.00 0.00 3.62
9100 9438 6.246420 ACATACAGAGCAAAATGAGTGAAC 57.754 37.500 0.00 0.00 0.00 3.18
9101 9439 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
9102 9440 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
9103 9441 6.974932 ACTACATACAGAGCAAAATGAGTG 57.025 37.500 0.00 0.00 0.00 3.51
9106 9444 9.208022 GCATATACTACATACAGAGCAAAATGA 57.792 33.333 0.00 0.00 0.00 2.57
9107 9445 9.212641 AGCATATACTACATACAGAGCAAAATG 57.787 33.333 0.00 0.00 0.00 2.32
9111 9449 9.914131 CTTTAGCATATACTACATACAGAGCAA 57.086 33.333 0.00 0.00 0.00 3.91
9112 9450 9.078990 ACTTTAGCATATACTACATACAGAGCA 57.921 33.333 0.00 0.00 0.00 4.26
9113 9451 9.915629 AACTTTAGCATATACTACATACAGAGC 57.084 33.333 0.00 0.00 0.00 4.09
9137 9475 9.177304 CGTTCCTGAATAAGACCTTTTAAAAAC 57.823 33.333 1.66 0.00 0.00 2.43
9138 9476 8.354426 CCGTTCCTGAATAAGACCTTTTAAAAA 58.646 33.333 1.66 0.00 0.00 1.94
9139 9477 7.720515 TCCGTTCCTGAATAAGACCTTTTAAAA 59.279 33.333 0.00 0.00 0.00 1.52
9140 9478 7.225725 TCCGTTCCTGAATAAGACCTTTTAAA 58.774 34.615 0.00 0.00 0.00 1.52
9141 9479 6.771573 TCCGTTCCTGAATAAGACCTTTTAA 58.228 36.000 0.00 0.00 0.00 1.52
9142 9480 6.363167 TCCGTTCCTGAATAAGACCTTTTA 57.637 37.500 0.00 0.00 0.00 1.52
9143 9481 5.237236 TCCGTTCCTGAATAAGACCTTTT 57.763 39.130 0.00 0.00 0.00 2.27
9144 9482 4.323562 CCTCCGTTCCTGAATAAGACCTTT 60.324 45.833 0.00 0.00 0.00 3.11
9145 9483 3.197983 CCTCCGTTCCTGAATAAGACCTT 59.802 47.826 0.00 0.00 0.00 3.50
9146 9484 2.766828 CCTCCGTTCCTGAATAAGACCT 59.233 50.000 0.00 0.00 0.00 3.85
9147 9485 2.158943 CCCTCCGTTCCTGAATAAGACC 60.159 54.545 0.00 0.00 0.00 3.85
9148 9486 2.764572 TCCCTCCGTTCCTGAATAAGAC 59.235 50.000 0.00 0.00 0.00 3.01
9149 9487 3.031736 CTCCCTCCGTTCCTGAATAAGA 58.968 50.000 0.00 0.00 0.00 2.10
9150 9488 2.766828 ACTCCCTCCGTTCCTGAATAAG 59.233 50.000 0.00 0.00 0.00 1.73
9151 9489 2.829023 ACTCCCTCCGTTCCTGAATAA 58.171 47.619 0.00 0.00 0.00 1.40
9152 9490 2.544844 ACTCCCTCCGTTCCTGAATA 57.455 50.000 0.00 0.00 0.00 1.75
9153 9491 2.292323 ACTACTCCCTCCGTTCCTGAAT 60.292 50.000 0.00 0.00 0.00 2.57
9154 9492 1.076677 ACTACTCCCTCCGTTCCTGAA 59.923 52.381 0.00 0.00 0.00 3.02
9155 9493 0.702902 ACTACTCCCTCCGTTCCTGA 59.297 55.000 0.00 0.00 0.00 3.86
9156 9494 1.558233 AACTACTCCCTCCGTTCCTG 58.442 55.000 0.00 0.00 0.00 3.86
9157 9495 1.900486 CAAACTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
9158 9496 1.675116 GCAAACTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
9159 9497 1.275573 AGCAAACTACTCCCTCCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
9160 9498 1.349067 AGCAAACTACTCCCTCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
9161 9499 1.349067 AAGCAAACTACTCCCTCCGT 58.651 50.000 0.00 0.00 0.00 4.69
9162 9500 3.821421 ATAAGCAAACTACTCCCTCCG 57.179 47.619 0.00 0.00 0.00 4.63
9163 9501 5.746284 AGAAATAAGCAAACTACTCCCTCC 58.254 41.667 0.00 0.00 0.00 4.30
9164 9502 7.689446 AAAGAAATAAGCAAACTACTCCCTC 57.311 36.000 0.00 0.00 0.00 4.30
9165 9503 8.478775 AAAAAGAAATAAGCAAACTACTCCCT 57.521 30.769 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.