Multiple sequence alignment - TraesCS7A01G357600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G357600 chr7A 100.000 9609 0 0 1 9609 526159937 526150329 0.000000e+00 17745.0
1 TraesCS7A01G357600 chr7A 90.698 645 49 2 1 643 510161477 510160842 0.000000e+00 848.0
2 TraesCS7A01G357600 chr7A 82.653 98 11 4 5916 6007 35393531 35393628 2.220000e-11 82.4
3 TraesCS7A01G357600 chr7A 97.297 37 0 1 5916 5951 646834658 646834694 2.900000e-05 62.1
4 TraesCS7A01G357600 chr7A 82.857 70 6 2 9192 9257 68878814 68878881 3.750000e-04 58.4
5 TraesCS7A01G357600 chr7B 94.515 3245 122 35 868 4082 495303275 495306493 0.000000e+00 4955.0
6 TraesCS7A01G357600 chr7B 93.680 2041 81 19 6939 8967 495309808 495311812 0.000000e+00 3011.0
7 TraesCS7A01G357600 chr7B 90.454 1519 58 12 4075 5541 495306612 495308095 0.000000e+00 1921.0
8 TraesCS7A01G357600 chr7B 93.172 1113 41 7 5854 6941 495308637 495309739 0.000000e+00 1602.0
9 TraesCS7A01G357600 chr7B 87.879 528 41 11 9088 9597 495311956 495312478 4.970000e-167 599.0
10 TraesCS7A01G357600 chr7B 92.933 283 18 2 5535 5816 495308142 495308423 2.500000e-110 411.0
11 TraesCS7A01G357600 chr7B 95.062 81 4 0 740 820 495303182 495303262 2.820000e-25 128.0
12 TraesCS7A01G357600 chr7B 93.617 47 2 1 8965 9011 495311915 495311960 1.730000e-07 69.4
13 TraesCS7A01G357600 chr7B 100.000 29 0 0 6084 6112 619235825 619235797 5.000000e-03 54.7
14 TraesCS7A01G357600 chr7B 100.000 29 0 0 6084 6112 619324006 619323978 5.000000e-03 54.7
15 TraesCS7A01G357600 chr7D 93.037 2628 108 29 6655 9248 471547888 471550474 0.000000e+00 3770.0
16 TraesCS7A01G357600 chr7D 92.174 2134 84 15 3090 5202 471542673 471544744 0.000000e+00 2939.0
17 TraesCS7A01G357600 chr7D 90.625 1472 101 23 5186 6624 471545367 471546834 0.000000e+00 1919.0
18 TraesCS7A01G357600 chr7D 93.135 1311 55 13 1805 3086 471541323 471542627 0.000000e+00 1890.0
19 TraesCS7A01G357600 chr7D 92.699 1041 47 15 740 1770 471540306 471541327 0.000000e+00 1474.0
20 TraesCS7A01G357600 chr7D 90.226 266 25 1 9277 9541 471550468 471550733 7.140000e-91 346.0
21 TraesCS7A01G357600 chr7D 86.538 104 12 2 9303 9405 190132913 190132811 7.890000e-21 113.0
22 TraesCS7A01G357600 chr7D 90.000 50 5 0 9214 9263 326053451 326053402 2.240000e-06 65.8
23 TraesCS7A01G357600 chr7D 100.000 31 0 0 5508 5538 471545649 471545679 3.750000e-04 58.4
24 TraesCS7A01G357600 chr7D 100.000 28 0 0 6631 6658 471546863 471546890 1.700000e-02 52.8
25 TraesCS7A01G357600 chr6A 90.798 652 49 2 1 650 591795575 591796217 0.000000e+00 861.0
26 TraesCS7A01G357600 chr1A 90.895 648 47 3 1 645 585986010 585986648 0.000000e+00 859.0
27 TraesCS7A01G357600 chr1A 91.973 598 37 3 1 596 95107118 95107706 0.000000e+00 828.0
28 TraesCS7A01G357600 chr1A 89.538 650 55 4 1 648 105283748 105284386 0.000000e+00 811.0
29 TraesCS7A01G357600 chr3A 86.499 674 51 10 1 645 50745720 50746382 0.000000e+00 704.0
30 TraesCS7A01G357600 chr3A 91.572 439 26 2 1 437 686078931 686079360 6.420000e-166 595.0
31 TraesCS7A01G357600 chr3A 77.344 256 37 11 9165 9400 594867286 594867032 2.180000e-26 132.0
32 TraesCS7A01G357600 chr3A 84.211 133 21 0 514 646 93333868 93333736 7.830000e-26 130.0
33 TraesCS7A01G357600 chr3A 87.671 73 8 1 5804 5876 704693545 704693616 6.180000e-12 84.2
34 TraesCS7A01G357600 chr3A 85.246 61 5 2 9200 9260 569564411 569564467 1.040000e-04 60.2
35 TraesCS7A01G357600 chr3A 100.000 28 0 0 6082 6109 732984817 732984790 1.700000e-02 52.8
36 TraesCS7A01G357600 chr5D 86.377 668 54 8 1 642 349877229 349876573 0.000000e+00 695.0
37 TraesCS7A01G357600 chr1D 86.111 648 69 8 1 639 251850575 251851210 0.000000e+00 678.0
38 TraesCS7A01G357600 chr3D 81.529 157 24 5 9256 9410 553310830 553310983 3.640000e-24 124.0
39 TraesCS7A01G357600 chr3D 85.965 114 13 2 9297 9410 443263486 443263376 1.700000e-22 119.0
40 TraesCS7A01G357600 chr3D 93.023 43 1 2 9208 9249 93175753 93175712 2.900000e-05 62.1
41 TraesCS7A01G357600 chr4A 81.169 154 27 2 4394 4547 111914613 111914764 1.310000e-23 122.0
42 TraesCS7A01G357600 chr4A 79.866 149 30 0 9256 9404 579421730 579421878 1.020000e-19 110.0
43 TraesCS7A01G357600 chr2A 83.333 120 19 1 9281 9400 631787754 631787872 1.020000e-19 110.0
44 TraesCS7A01G357600 chr2A 82.400 125 19 3 9281 9405 631787886 631788007 1.320000e-18 106.0
45 TraesCS7A01G357600 chr2A 92.308 39 1 2 6073 6110 707312561 707312524 5.000000e-03 54.7
46 TraesCS7A01G357600 chr4B 85.185 81 12 0 1240 1320 660110015 660109935 6.180000e-12 84.2
47 TraesCS7A01G357600 chr4B 83.582 67 7 1 9201 9263 12241023 12241089 1.040000e-04 60.2
48 TraesCS7A01G357600 chr4D 89.091 55 5 1 5916 5970 496648802 496648855 6.230000e-07 67.6
49 TraesCS7A01G357600 chr6B 95.122 41 2 0 5907 5947 620865355 620865315 2.240000e-06 65.8
50 TraesCS7A01G357600 chr6B 79.348 92 11 5 9165 9249 626313293 626313383 3.750000e-04 58.4
51 TraesCS7A01G357600 chr2D 78.641 103 18 3 5918 6016 568084605 568084503 2.240000e-06 65.8
52 TraesCS7A01G357600 chr2B 90.000 50 5 0 6060 6109 765394758 765394709 2.240000e-06 65.8
53 TraesCS7A01G357600 chr1B 80.435 92 7 8 9165 9248 325804320 325804408 1.040000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G357600 chr7A 526150329 526159937 9608 True 17745.00 17745 100.000 1 9609 1 chr7A.!!$R2 9608
1 TraesCS7A01G357600 chr7A 510160842 510161477 635 True 848.00 848 90.698 1 643 1 chr7A.!!$R1 642
2 TraesCS7A01G357600 chr7B 495303182 495312478 9296 False 1587.05 4955 92.664 740 9597 8 chr7B.!!$F1 8857
3 TraesCS7A01G357600 chr7D 471540306 471550733 10427 False 1556.15 3770 93.987 740 9541 8 chr7D.!!$F1 8801
4 TraesCS7A01G357600 chr6A 591795575 591796217 642 False 861.00 861 90.798 1 650 1 chr6A.!!$F1 649
5 TraesCS7A01G357600 chr1A 585986010 585986648 638 False 859.00 859 90.895 1 645 1 chr1A.!!$F3 644
6 TraesCS7A01G357600 chr1A 95107118 95107706 588 False 828.00 828 91.973 1 596 1 chr1A.!!$F1 595
7 TraesCS7A01G357600 chr1A 105283748 105284386 638 False 811.00 811 89.538 1 648 1 chr1A.!!$F2 647
8 TraesCS7A01G357600 chr3A 50745720 50746382 662 False 704.00 704 86.499 1 645 1 chr3A.!!$F1 644
9 TraesCS7A01G357600 chr5D 349876573 349877229 656 True 695.00 695 86.377 1 642 1 chr5D.!!$R1 641
10 TraesCS7A01G357600 chr1D 251850575 251851210 635 False 678.00 678 86.111 1 639 1 chr1D.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 764 0.033504 ACTGTGCAGGTAACCAGACG 59.966 55.000 6.74 0.00 37.17 4.18 F
1034 1063 0.178915 TCTTCCCTTTCCGTCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86 F
1661 1694 1.002087 CAACGTCTTCTTGTAGGGCCT 59.998 52.381 12.58 12.58 0.00 5.19 F
2269 2320 0.537371 CCTGACCCTGGTTTGTGTCC 60.537 60.000 0.00 0.00 0.00 4.02 F
3182 3295 0.846693 ACAAAAGCTGGACCCACTCT 59.153 50.000 0.00 0.00 0.00 3.24 F
3385 3498 1.264288 GTTGAACCAAAGAGCTGTCCG 59.736 52.381 0.00 0.00 0.00 4.79 F
4560 4820 0.179065 CTCGAGCAGGCCATTCATCA 60.179 55.000 5.01 0.00 0.00 3.07 F
5228 6130 0.168128 GGCTGGAAAACAACGATCCG 59.832 55.000 0.00 0.00 35.96 4.18 F
6154 7325 0.106519 AACTGCAGGCATATGGGGAC 60.107 55.000 19.93 0.00 0.00 4.46 F
6799 8996 0.036010 CCTCGGTGAGAATGGCAAGT 60.036 55.000 0.00 0.00 0.00 3.16 F
7435 9707 0.031585 TGATACGCGGTACATGCTCC 59.968 55.000 12.47 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 1802 0.450184 GCAACGATTACCATGCCGTT 59.550 50.000 0.00 0.00 44.67 4.44 R
1928 1969 0.467844 ATGCAGCCACCAAAGACACA 60.468 50.000 0.00 0.00 0.00 3.72 R
3096 3208 0.184933 AAGCTGGGTTGCAAGGTACA 59.815 50.000 0.00 0.00 34.99 2.90 R
3859 3974 1.068194 CAAGATATCGACTCTCCCCGC 60.068 57.143 0.00 0.00 0.00 6.13 R
4326 4584 0.253044 GAGCCATGGTAACTGCCTCA 59.747 55.000 14.67 0.00 37.61 3.86 R
4749 5009 0.449388 GCCATGTGCTTGCACTAGAC 59.551 55.000 23.53 9.65 36.87 2.59 R
5836 6828 0.031585 CATTGAGCAATGGATGGGCG 59.968 55.000 13.94 0.00 43.25 6.13 R
6731 8928 0.179018 AGTTCAACTGGGAGGTGTGC 60.179 55.000 0.00 0.00 33.77 4.57 R
7214 9482 1.887854 TGCAGTCAACAATGATGGTGG 59.112 47.619 0.00 0.00 44.73 4.61 R
8534 10832 1.542492 CCTCCTTGCTTGACTTGCAT 58.458 50.000 0.00 0.00 40.34 3.96 R
9206 11625 0.236187 GGTGTGCGTGCGTTCATAAA 59.764 50.000 0.00 0.00 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.804396 CTCTGCGATGGAGAGGCGAT 61.804 60.000 7.38 0.00 34.42 4.58
50 51 0.100682 CGATGGACACGACGATCCTT 59.899 55.000 19.05 14.52 35.86 3.36
362 363 1.746991 GGAGGGAGCGCCTTCTTTG 60.747 63.158 17.86 0.00 40.04 2.77
363 364 2.360475 AGGGAGCGCCTTCTTTGC 60.360 61.111 2.29 0.00 0.00 3.68
364 365 3.443925 GGGAGCGCCTTCTTTGCC 61.444 66.667 2.29 0.00 0.00 4.52
365 366 2.360475 GGAGCGCCTTCTTTGCCT 60.360 61.111 2.29 0.00 0.00 4.75
366 367 1.973812 GGAGCGCCTTCTTTGCCTT 60.974 57.895 2.29 0.00 0.00 4.35
367 368 1.503994 GAGCGCCTTCTTTGCCTTC 59.496 57.895 2.29 0.00 0.00 3.46
368 369 0.957888 GAGCGCCTTCTTTGCCTTCT 60.958 55.000 2.29 0.00 0.00 2.85
369 370 0.538287 AGCGCCTTCTTTGCCTTCTT 60.538 50.000 2.29 0.00 0.00 2.52
370 371 0.315251 GCGCCTTCTTTGCCTTCTTT 59.685 50.000 0.00 0.00 0.00 2.52
385 386 0.382873 TCTTTTATAGCGAGCGCCGA 59.617 50.000 20.06 0.03 43.17 5.54
473 501 1.266718 GTGCTGGAGCGTCAAAATCAA 59.733 47.619 0.00 0.00 45.83 2.57
475 503 1.806542 GCTGGAGCGTCAAAATCAAGA 59.193 47.619 0.00 0.00 0.00 3.02
507 536 0.714994 GTTAAACGCGTGCGGTCATA 59.285 50.000 14.98 0.00 44.69 2.15
553 582 3.025262 ACTGCCGACCCAAAACTAAAAA 58.975 40.909 0.00 0.00 0.00 1.94
581 610 2.428071 GCGAACGAACGACCGACT 60.428 61.111 13.88 0.00 35.09 4.18
620 649 2.203401 ACAAAATCGTCGTCCGTTTGA 58.797 42.857 14.84 0.00 36.54 2.69
627 656 1.694639 GTCGTCCGTTTGAATCGACT 58.305 50.000 8.41 0.00 44.52 4.18
650 679 5.408356 TCGTTGGAGTTGCTCTAAGTAATC 58.592 41.667 0.00 0.00 31.92 1.75
651 680 5.047590 TCGTTGGAGTTGCTCTAAGTAATCA 60.048 40.000 0.00 0.00 31.92 2.57
652 681 5.637810 CGTTGGAGTTGCTCTAAGTAATCAA 59.362 40.000 0.00 0.00 31.92 2.57
653 682 6.313905 CGTTGGAGTTGCTCTAAGTAATCAAT 59.686 38.462 0.00 0.00 31.92 2.57
654 683 7.464710 CGTTGGAGTTGCTCTAAGTAATCAATC 60.465 40.741 0.00 0.00 31.92 2.67
655 684 6.946340 TGGAGTTGCTCTAAGTAATCAATCA 58.054 36.000 0.00 0.00 0.00 2.57
656 685 7.394016 TGGAGTTGCTCTAAGTAATCAATCAA 58.606 34.615 0.00 0.00 0.00 2.57
657 686 7.334421 TGGAGTTGCTCTAAGTAATCAATCAAC 59.666 37.037 0.00 0.00 33.55 3.18
658 687 7.334421 GGAGTTGCTCTAAGTAATCAATCAACA 59.666 37.037 0.00 0.00 35.19 3.33
659 688 8.798859 AGTTGCTCTAAGTAATCAATCAACAT 57.201 30.769 0.00 0.00 35.19 2.71
660 689 9.890629 AGTTGCTCTAAGTAATCAATCAACATA 57.109 29.630 0.00 0.00 35.19 2.29
661 690 9.922305 GTTGCTCTAAGTAATCAATCAACATAC 57.078 33.333 0.00 0.00 33.57 2.39
662 691 9.665719 TTGCTCTAAGTAATCAATCAACATACA 57.334 29.630 0.00 0.00 0.00 2.29
663 692 9.836864 TGCTCTAAGTAATCAATCAACATACAT 57.163 29.630 0.00 0.00 0.00 2.29
670 699 9.783081 AGTAATCAATCAACATACATATGCTCA 57.217 29.630 1.58 0.00 37.19 4.26
674 703 8.680039 TCAATCAACATACATATGCTCAATCA 57.320 30.769 1.58 0.00 37.19 2.57
675 704 8.780249 TCAATCAACATACATATGCTCAATCAG 58.220 33.333 1.58 0.00 37.19 2.90
676 705 8.780249 CAATCAACATACATATGCTCAATCAGA 58.220 33.333 1.58 0.00 37.19 3.27
677 706 7.719778 TCAACATACATATGCTCAATCAGAC 57.280 36.000 1.58 0.00 37.19 3.51
678 707 6.707608 TCAACATACATATGCTCAATCAGACC 59.292 38.462 1.58 0.00 37.19 3.85
679 708 5.555017 ACATACATATGCTCAATCAGACCC 58.445 41.667 1.58 0.00 37.19 4.46
680 709 3.117491 ACATATGCTCAATCAGACCCG 57.883 47.619 1.58 0.00 0.00 5.28
681 710 2.700371 ACATATGCTCAATCAGACCCGA 59.300 45.455 1.58 0.00 0.00 5.14
682 711 3.326006 ACATATGCTCAATCAGACCCGAT 59.674 43.478 1.58 0.00 0.00 4.18
683 712 4.202398 ACATATGCTCAATCAGACCCGATT 60.202 41.667 1.58 0.00 36.00 3.34
689 718 1.369625 AATCAGACCCGATTGAACGC 58.630 50.000 0.00 0.00 34.31 4.84
690 719 0.806102 ATCAGACCCGATTGAACGCG 60.806 55.000 3.53 3.53 0.00 6.01
691 720 1.736645 CAGACCCGATTGAACGCGT 60.737 57.895 5.58 5.58 0.00 6.01
692 721 0.457166 CAGACCCGATTGAACGCGTA 60.457 55.000 14.46 0.00 0.00 4.42
693 722 0.458669 AGACCCGATTGAACGCGTAT 59.541 50.000 14.46 1.17 0.00 3.06
694 723 0.575390 GACCCGATTGAACGCGTATG 59.425 55.000 14.46 0.00 0.00 2.39
695 724 1.275657 CCCGATTGAACGCGTATGC 59.724 57.895 14.46 5.89 37.91 3.14
696 725 1.425267 CCCGATTGAACGCGTATGCA 61.425 55.000 14.46 8.92 42.97 3.96
697 726 0.043053 CCGATTGAACGCGTATGCAG 60.043 55.000 14.46 2.61 42.97 4.41
698 727 0.920664 CGATTGAACGCGTATGCAGA 59.079 50.000 14.46 3.42 42.97 4.26
699 728 1.522676 CGATTGAACGCGTATGCAGAT 59.477 47.619 14.46 7.91 42.97 2.90
700 729 2.657427 CGATTGAACGCGTATGCAGATG 60.657 50.000 14.46 0.00 42.97 2.90
701 730 1.006086 TTGAACGCGTATGCAGATGG 58.994 50.000 14.46 0.00 42.97 3.51
702 731 0.809636 TGAACGCGTATGCAGATGGG 60.810 55.000 14.46 15.28 42.97 4.00
703 732 0.529773 GAACGCGTATGCAGATGGGA 60.530 55.000 22.64 0.00 42.97 4.37
704 733 0.107897 AACGCGTATGCAGATGGGAA 60.108 50.000 22.64 0.00 42.97 3.97
705 734 0.107897 ACGCGTATGCAGATGGGAAA 60.108 50.000 22.64 0.00 42.97 3.13
706 735 1.013596 CGCGTATGCAGATGGGAAAA 58.986 50.000 11.88 0.00 42.97 2.29
707 736 1.400142 CGCGTATGCAGATGGGAAAAA 59.600 47.619 11.88 0.00 42.97 1.94
729 758 8.543862 AAAAACTATAGTACTGTGCAGGTAAC 57.456 34.615 5.65 0.00 0.00 2.50
730 759 5.848833 ACTATAGTACTGTGCAGGTAACC 57.151 43.478 2.75 0.00 37.17 2.85
731 760 5.266788 ACTATAGTACTGTGCAGGTAACCA 58.733 41.667 2.75 0.00 37.17 3.67
732 761 4.737855 ATAGTACTGTGCAGGTAACCAG 57.262 45.455 5.39 0.00 37.17 4.00
733 762 2.605257 AGTACTGTGCAGGTAACCAGA 58.395 47.619 6.74 0.00 37.17 3.86
734 763 2.299297 AGTACTGTGCAGGTAACCAGAC 59.701 50.000 6.74 1.85 37.17 3.51
735 764 0.033504 ACTGTGCAGGTAACCAGACG 59.966 55.000 6.74 0.00 37.17 4.18
736 765 1.291877 CTGTGCAGGTAACCAGACGC 61.292 60.000 0.00 0.00 37.17 5.19
737 766 1.301401 GTGCAGGTAACCAGACGCA 60.301 57.895 0.00 0.00 37.17 5.24
738 767 0.673644 GTGCAGGTAACCAGACGCAT 60.674 55.000 0.00 0.00 37.17 4.73
752 781 2.954868 GCATCCGTAGTGACCGCG 60.955 66.667 0.00 0.00 0.00 6.46
820 849 0.461961 GGATCTTCACTCCGTCCCAG 59.538 60.000 0.00 0.00 0.00 4.45
821 850 0.461961 GATCTTCACTCCGTCCCAGG 59.538 60.000 0.00 0.00 0.00 4.45
822 851 1.617947 ATCTTCACTCCGTCCCAGGC 61.618 60.000 0.00 0.00 0.00 4.85
823 852 2.525629 TTCACTCCGTCCCAGGCA 60.526 61.111 0.00 0.00 0.00 4.75
824 853 1.903877 CTTCACTCCGTCCCAGGCAT 61.904 60.000 0.00 0.00 0.00 4.40
825 854 2.124983 CACTCCGTCCCAGGCATG 60.125 66.667 0.00 0.00 0.00 4.06
826 855 4.101448 ACTCCGTCCCAGGCATGC 62.101 66.667 9.90 9.90 0.00 4.06
827 856 4.864334 CTCCGTCCCAGGCATGCC 62.864 72.222 30.12 30.12 0.00 4.40
829 858 4.864334 CCGTCCCAGGCATGCCTC 62.864 72.222 36.65 23.36 46.28 4.70
830 859 4.864334 CGTCCCAGGCATGCCTCC 62.864 72.222 36.65 21.66 46.28 4.30
831 860 4.864334 GTCCCAGGCATGCCTCCG 62.864 72.222 36.65 26.98 46.28 4.63
833 862 4.864334 CCCAGGCATGCCTCCGTC 62.864 72.222 36.65 8.94 46.28 4.79
834 863 4.864334 CCAGGCATGCCTCCGTCC 62.864 72.222 36.65 8.12 46.28 4.79
835 864 4.864334 CAGGCATGCCTCCGTCCC 62.864 72.222 36.65 7.29 46.28 4.46
994 1023 4.719106 ACCCGACTCCGACTCGCT 62.719 66.667 0.00 0.00 38.22 4.93
1034 1063 0.178915 TCTTCCCTTTCCGTCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1054 1087 2.357517 CCAAGCTCCGTCGCAGTT 60.358 61.111 0.00 0.00 0.00 3.16
1159 1192 3.962557 CCTGCTCGGGATCTCCTT 58.037 61.111 0.00 0.00 35.95 3.36
1262 1295 2.960170 GTGTACGACCTCACGCCT 59.040 61.111 0.00 0.00 36.70 5.52
1289 1322 4.367023 TACGTCCACTGGTGCGGC 62.367 66.667 15.47 0.00 0.00 6.53
1368 1401 3.306019 GCGGATTCTGTGAAATTTGGGTT 60.306 43.478 0.00 0.00 0.00 4.11
1569 1602 1.271871 ACGAATTGACAATGGCAGGGA 60.272 47.619 0.34 0.00 0.00 4.20
1578 1611 2.041701 CAATGGCAGGGAATTTAGGGG 58.958 52.381 0.00 0.00 0.00 4.79
1581 1614 1.043116 GGCAGGGAATTTAGGGGTGC 61.043 60.000 0.00 0.00 0.00 5.01
1601 1634 5.874810 GGTGCTGAGATTTGTCTTACACATA 59.125 40.000 0.00 0.00 33.90 2.29
1633 1666 4.164796 ACCAGATTCAGATTACTGCCATGA 59.835 41.667 0.00 0.00 43.17 3.07
1644 1677 1.070601 ACTGCCATGAAAAAGCCCAAC 59.929 47.619 0.00 0.00 0.00 3.77
1661 1694 1.002087 CAACGTCTTCTTGTAGGGCCT 59.998 52.381 12.58 12.58 0.00 5.19
1670 1708 6.323225 GTCTTCTTGTAGGGCCTATGTAGTTA 59.677 42.308 17.90 6.71 0.00 2.24
1672 1710 7.567622 TCTTCTTGTAGGGCCTATGTAGTTATT 59.432 37.037 17.90 0.00 0.00 1.40
1720 1760 1.111277 ACTTGGTTGTGCAACTTCCC 58.889 50.000 13.78 0.00 40.94 3.97
1730 1770 3.181434 TGTGCAACTTCCCACTTAGGAAT 60.181 43.478 0.00 0.00 44.87 3.01
1737 1777 7.637301 GCAACTTCCCACTTAGGAATTAGGATA 60.637 40.741 0.00 0.00 44.87 2.59
1773 1813 3.199071 AGATAGGACAAAACGGCATGGTA 59.801 43.478 0.00 0.00 0.00 3.25
1790 1830 5.391523 GCATGGTAATCGTTGCTTTGAAGTA 60.392 40.000 0.00 0.00 0.00 2.24
1802 1843 7.481798 CGTTGCTTTGAAGTAGAAAATATCACC 59.518 37.037 0.00 0.00 0.00 4.02
1853 1894 8.181904 TCATTTAATTCAGCTGGGGAATAATC 57.818 34.615 15.13 0.00 34.02 1.75
1904 1945 7.707624 TTTAGTACGATCAGTCCTTTTAGGA 57.292 36.000 0.00 0.00 43.43 2.94
1965 2006 4.546570 TGCATGCTAGTACGCTAATAGTG 58.453 43.478 20.33 0.00 0.00 2.74
1966 2007 4.037565 TGCATGCTAGTACGCTAATAGTGT 59.962 41.667 20.33 11.47 42.35 3.55
1979 2020 5.915758 CGCTAATAGTGTCTACTTAGGCTTG 59.084 44.000 0.00 0.00 38.36 4.01
2043 2094 5.784578 AGGTTTTTAATGTGTTGGAGTCC 57.215 39.130 0.73 0.73 0.00 3.85
2206 2257 6.266558 TGCCTTGTAGTTATTGTTTCCATTGT 59.733 34.615 0.00 0.00 0.00 2.71
2207 2258 7.151976 GCCTTGTAGTTATTGTTTCCATTGTT 58.848 34.615 0.00 0.00 0.00 2.83
2269 2320 0.537371 CCTGACCCTGGTTTGTGTCC 60.537 60.000 0.00 0.00 0.00 4.02
2319 2370 3.481035 ACCCCAGGTGGTATATTTTCCT 58.519 45.455 0.00 0.00 36.67 3.36
2439 2490 3.077484 ACTTATTGCTGGCACTGTCAT 57.923 42.857 0.00 0.00 0.00 3.06
2474 2525 8.084590 AGTTAATTGTTCTGGTAAGTTTCTCG 57.915 34.615 0.00 0.00 0.00 4.04
2495 2546 3.317993 CGATTGTCCTCAAAAGGTTTGGT 59.682 43.478 1.15 0.00 43.82 3.67
2512 2563 2.657143 TGGTTTTTGCTAAACCCGAGT 58.343 42.857 22.83 0.00 46.93 4.18
2687 2739 9.920133 AATAGTGCTAGATGTGTAACTCATATG 57.080 33.333 0.00 0.00 38.04 1.78
2893 2963 1.243902 AGGTGTGTTGGTTTATGCCG 58.756 50.000 0.00 0.00 0.00 5.69
3096 3208 6.835488 AGAGCACACATGGATATAAACCAAAT 59.165 34.615 0.00 0.00 40.93 2.32
3167 3280 8.202811 TGGATGATCACAAATTCAAAGAACAAA 58.797 29.630 0.00 0.00 0.00 2.83
3182 3295 0.846693 ACAAAAGCTGGACCCACTCT 59.153 50.000 0.00 0.00 0.00 3.24
3382 3495 2.092429 TGAGGTTGAACCAAAGAGCTGT 60.092 45.455 17.83 0.00 41.95 4.40
3385 3498 1.264288 GTTGAACCAAAGAGCTGTCCG 59.736 52.381 0.00 0.00 0.00 4.79
3420 3533 6.430007 ACAGATCTTCAATTTTCATAGGCCT 58.570 36.000 11.78 11.78 0.00 5.19
3578 3691 3.235200 CCAATTCCTGGTTGGGTTAACA 58.765 45.455 8.10 0.00 41.90 2.41
3698 3811 3.755905 TGCCGAAATTGTGTATGTCATGT 59.244 39.130 0.00 0.00 0.00 3.21
3963 4080 4.140805 ACTGCTCAGGTCTAGGAGGAATAT 60.141 45.833 1.66 0.00 36.79 1.28
3964 4081 5.075205 ACTGCTCAGGTCTAGGAGGAATATA 59.925 44.000 1.66 0.00 36.79 0.86
3965 4082 5.575157 TGCTCAGGTCTAGGAGGAATATAG 58.425 45.833 0.00 0.00 0.00 1.31
3966 4083 5.313506 TGCTCAGGTCTAGGAGGAATATAGA 59.686 44.000 0.00 0.00 0.00 1.98
3967 4084 6.011185 TGCTCAGGTCTAGGAGGAATATAGAT 60.011 42.308 0.00 0.00 0.00 1.98
3969 4086 8.056400 GCTCAGGTCTAGGAGGAATATAGATTA 58.944 40.741 0.00 0.00 0.00 1.75
3971 4088 9.928618 TCAGGTCTAGGAGGAATATAGATTATG 57.071 37.037 0.00 0.00 0.00 1.90
3972 4089 8.637986 CAGGTCTAGGAGGAATATAGATTATGC 58.362 40.741 0.00 0.00 0.00 3.14
3973 4090 8.347591 AGGTCTAGGAGGAATATAGATTATGCA 58.652 37.037 0.00 0.00 0.00 3.96
3974 4091 9.153479 GGTCTAGGAGGAATATAGATTATGCAT 57.847 37.037 3.79 3.79 0.00 3.96
4070 4187 8.894768 ATAGTTGAGTTAGTTGCCTTATCATC 57.105 34.615 0.00 0.00 0.00 2.92
4168 4410 4.327087 CGCCTTTTCAATAAGGTTGCATTC 59.673 41.667 0.00 0.00 45.34 2.67
4206 4448 8.903820 ACTTAAGCAAAGAATGAGTAAAGTTGT 58.096 29.630 1.29 0.00 38.67 3.32
4326 4584 5.530176 AGGGTTCATAACAATTGGTACCT 57.470 39.130 14.36 4.57 0.00 3.08
4366 4624 2.092646 CCAGATTCCGGGTAAACCATCA 60.093 50.000 0.00 0.00 40.22 3.07
4368 4626 4.207165 CAGATTCCGGGTAAACCATCATT 58.793 43.478 0.00 0.00 40.22 2.57
4381 4639 6.446781 AAACCATCATTGAAGTCATAGCTG 57.553 37.500 0.00 0.00 0.00 4.24
4521 4781 4.412207 GTTGGAAATCAGCGTTTGGATAC 58.588 43.478 0.00 0.00 0.00 2.24
4560 4820 0.179065 CTCGAGCAGGCCATTCATCA 60.179 55.000 5.01 0.00 0.00 3.07
4606 4866 2.587322 TTAGATCCCCGTTGCTGCCG 62.587 60.000 0.00 0.00 0.00 5.69
4669 4929 4.648626 CGCATCCGCATCCCCCAT 62.649 66.667 0.00 0.00 38.40 4.00
4684 4944 1.413662 CCCCATGCTCCTTCCTCTCTA 60.414 57.143 0.00 0.00 0.00 2.43
4749 5009 0.184211 TCATGATGGATGTGGGCTGG 59.816 55.000 0.00 0.00 33.29 4.85
4874 5134 4.166011 GCGCCGTGCAACTCATCC 62.166 66.667 0.00 0.00 45.45 3.51
5042 5302 2.116533 TTCGGCGGCTCGACAGATA 61.117 57.895 7.21 0.00 39.01 1.98
5043 5303 2.050895 CGGCGGCTCGACAGATAG 60.051 66.667 7.61 0.00 32.52 2.08
5101 5361 1.688197 AGTGGAAGAAAACGACGGGTA 59.312 47.619 0.00 0.00 0.00 3.69
5102 5362 2.102925 AGTGGAAGAAAACGACGGGTAA 59.897 45.455 0.00 0.00 0.00 2.85
5220 6122 1.696884 GGATTTTGGGGCTGGAAAACA 59.303 47.619 0.00 0.00 0.00 2.83
5228 6130 0.168128 GGCTGGAAAACAACGATCCG 59.832 55.000 0.00 0.00 35.96 4.18
5232 6134 3.000041 CTGGAAAACAACGATCCGATCA 59.000 45.455 9.07 0.00 35.96 2.92
5248 6150 1.071385 GATCACGGCCTCATGGAAGAT 59.929 52.381 0.00 0.00 34.57 2.40
5329 6231 2.338577 ATTGGCGCTAGAGAAAGCAT 57.661 45.000 7.64 0.00 42.91 3.79
5337 6239 3.739519 CGCTAGAGAAAGCATAGCTGGTT 60.740 47.826 0.00 0.00 44.70 3.67
5340 6242 3.604582 AGAGAAAGCATAGCTGGTTGTC 58.395 45.455 0.00 0.00 42.08 3.18
5422 6324 1.337071 GATGTGCCTCCGAGAACGATA 59.663 52.381 0.00 0.00 42.66 2.92
5482 6413 8.960591 CAAAATAAACTCTCTCTCTCTCTCTCT 58.039 37.037 0.00 0.00 0.00 3.10
5483 6414 8.738645 AAATAAACTCTCTCTCTCTCTCTCTC 57.261 38.462 0.00 0.00 0.00 3.20
5541 6476 5.985911 ACTAATCGCAACTACCCTAATTGT 58.014 37.500 0.00 0.00 0.00 2.71
5547 6538 4.324267 GCAACTACCCTAATTGTCTGTGT 58.676 43.478 0.00 0.00 0.00 3.72
5555 6546 4.022068 CCCTAATTGTCTGTGTGTTGCAAT 60.022 41.667 0.59 0.00 0.00 3.56
5638 6629 5.105756 GCTAGTGTTTTGTTTCCTATGGCAT 60.106 40.000 4.88 4.88 0.00 4.40
5738 6730 4.706962 AGGAAGCCACCAAAATGATACTTC 59.293 41.667 0.00 0.00 33.26 3.01
5757 6749 9.077885 GATACTTCCCATAAATCAAGGCAATTA 57.922 33.333 0.00 0.00 0.00 1.40
5783 6775 5.989477 TGAGGTATTTAACTGCACTATGCT 58.011 37.500 2.02 0.00 45.31 3.79
5799 6791 6.369065 GCACTATGCTTGTTGTAGTCTAAAGT 59.631 38.462 0.00 0.00 40.96 2.66
5836 6828 9.660180 GATACTCTCCATAATTAAAGTGATCCC 57.340 37.037 0.00 0.00 0.00 3.85
5841 7001 2.818751 AATTAAAGTGATCCCGCCCA 57.181 45.000 0.00 0.00 0.00 5.36
5846 7006 1.355718 AAGTGATCCCGCCCATCCAT 61.356 55.000 0.00 0.00 0.00 3.41
5847 7007 1.151450 GTGATCCCGCCCATCCATT 59.849 57.895 0.00 0.00 0.00 3.16
5852 7012 2.124193 CCGCCCATCCATTGCTCA 60.124 61.111 0.00 0.00 0.00 4.26
5973 7144 6.976636 ACTATGTTGGTTTTTGTTTTGTGG 57.023 33.333 0.00 0.00 0.00 4.17
6024 7195 2.203437 GGAAACCAAGCGGGGTGT 60.203 61.111 2.96 0.00 41.32 4.16
6034 7205 4.715523 CGGGGTGTGGGCGTGAAT 62.716 66.667 0.00 0.00 0.00 2.57
6154 7325 0.106519 AACTGCAGGCATATGGGGAC 60.107 55.000 19.93 0.00 0.00 4.46
6231 7403 0.250338 GCCAGGGTCGACTCTTTGTT 60.250 55.000 17.30 0.00 0.00 2.83
6382 7554 5.894298 TCATAGTTATCCTTGCCTCACAT 57.106 39.130 0.00 0.00 0.00 3.21
6588 7762 1.494721 TGGTTTTCTCACTGCCTCCTT 59.505 47.619 0.00 0.00 0.00 3.36
6606 7780 2.124109 TGGTTCAGCCACCGCAAA 60.124 55.556 0.00 0.00 43.61 3.68
6609 7783 2.124109 TTCAGCCACCGCAAACCA 60.124 55.556 0.00 0.00 37.52 3.67
6663 8860 1.004277 GGCCAGGACATTAAGACACCA 59.996 52.381 0.00 0.00 0.00 4.17
6712 8909 0.307760 CACCGTGCTGTTGTCTTTCC 59.692 55.000 0.00 0.00 0.00 3.13
6731 8928 2.623915 GCAGTGCCACAAGGAGCAG 61.624 63.158 2.85 0.00 40.28 4.24
6754 8951 1.134098 CACCTCCCAGTTGAACTGTGT 60.134 52.381 22.40 11.71 44.50 3.72
6794 8991 1.153289 CAGCCCTCGGTGAGAATGG 60.153 63.158 0.00 0.00 40.02 3.16
6795 8992 2.514824 GCCCTCGGTGAGAATGGC 60.515 66.667 0.00 0.00 38.94 4.40
6796 8993 2.989639 CCCTCGGTGAGAATGGCA 59.010 61.111 0.00 0.00 0.00 4.92
6797 8994 1.299648 CCCTCGGTGAGAATGGCAA 59.700 57.895 0.00 0.00 0.00 4.52
6798 8995 0.745845 CCCTCGGTGAGAATGGCAAG 60.746 60.000 0.00 0.00 0.00 4.01
6799 8996 0.036010 CCTCGGTGAGAATGGCAAGT 60.036 55.000 0.00 0.00 0.00 3.16
6890 9087 0.872021 GCTGGACTTAGCATCGGTCG 60.872 60.000 0.00 0.00 43.17 4.79
6920 9117 1.835531 GTAGCCTAACTGCCCCAACTA 59.164 52.381 0.00 0.00 0.00 2.24
6962 9230 2.343758 CTCGTGTGGTGACTGGGG 59.656 66.667 0.00 0.00 0.00 4.96
7019 9287 4.406648 TCAGAACTATCACCGATGCAAT 57.593 40.909 0.00 0.00 0.00 3.56
7126 9394 5.159273 TCTACTGTGTATTGTTGATGCCA 57.841 39.130 0.00 0.00 0.00 4.92
7214 9482 0.674581 TATGCTGCTGTGCTGTGGTC 60.675 55.000 0.00 0.00 0.00 4.02
7241 9509 1.338973 CATTGTTGACTGCACAGGCTT 59.661 47.619 4.89 0.00 41.91 4.35
7249 9517 2.282040 GCACAGGCTTGCCTCTGT 60.282 61.111 11.72 5.96 44.12 3.41
7435 9707 0.031585 TGATACGCGGTACATGCTCC 59.968 55.000 12.47 0.00 0.00 4.70
7700 9974 9.649167 AGTTGTCACTATAATACCTTGTGTTAC 57.351 33.333 0.00 0.00 0.00 2.50
7727 10001 2.005995 CACCGCACGACATATGGTG 58.994 57.895 7.80 7.64 43.55 4.17
7877 10154 4.345257 TCACTATCCAGAGGTTTCTATGCC 59.655 45.833 0.00 0.00 31.28 4.40
7883 10160 4.103153 TCCAGAGGTTTCTATGCCTTATGG 59.897 45.833 0.00 0.00 40.49 2.74
8205 10503 5.342806 TCAATGACAACTTTGACGATGAC 57.657 39.130 0.00 0.00 36.00 3.06
8288 10586 0.668535 GTCCACAGGTGAAAGTTGCC 59.331 55.000 0.00 0.00 0.00 4.52
8417 10715 2.498644 TACATTCAATGGCGGGTTCA 57.501 45.000 1.58 0.00 33.60 3.18
8422 10720 0.888736 TCAATGGCGGGTTCAGTGTG 60.889 55.000 0.00 0.00 32.78 3.82
8423 10721 0.888736 CAATGGCGGGTTCAGTGTGA 60.889 55.000 0.00 0.00 0.00 3.58
8436 10734 4.963318 TCAGTGTGATGGTTTCTTCTCT 57.037 40.909 0.00 0.00 0.00 3.10
8439 10737 4.151335 CAGTGTGATGGTTTCTTCTCTTCG 59.849 45.833 0.00 0.00 0.00 3.79
8524 10822 9.277565 CCAGTGTGTAATCTTATTTCATTTTCG 57.722 33.333 0.00 0.00 0.00 3.46
8525 10823 9.825972 CAGTGTGTAATCTTATTTCATTTTCGT 57.174 29.630 0.00 0.00 0.00 3.85
8575 10883 3.366374 GCATGGTTCCTGAAAACTGCTAC 60.366 47.826 0.00 0.00 30.63 3.58
8587 10895 7.342318 TGAAAACTGCTACGTTACTATCAAC 57.658 36.000 0.00 0.00 0.00 3.18
8635 10943 5.515886 CCTTTTCTGGGTCCTGGTATGTTAA 60.516 44.000 0.00 0.00 0.00 2.01
8642 10950 5.163077 TGGGTCCTGGTATGTTAAGTTTTCA 60.163 40.000 0.00 0.00 0.00 2.69
8652 10960 9.180678 GGTATGTTAAGTTTTCACATTGACTTG 57.819 33.333 0.00 0.00 34.46 3.16
8672 10980 6.772078 ACTTGTCTTTAGTTGTTTCTTGTCG 58.228 36.000 0.00 0.00 0.00 4.35
8785 11093 1.672881 CGACATTTCTCCATTCCAGCC 59.327 52.381 0.00 0.00 0.00 4.85
8787 11095 1.358787 ACATTTCTCCATTCCAGCCCA 59.641 47.619 0.00 0.00 0.00 5.36
8801 11109 1.095228 AGCCCAATCACCGTAATGCG 61.095 55.000 0.00 0.00 40.95 4.73
8818 11126 7.254185 CCGTAATGCGTGTTGTATTATTACTGT 60.254 37.037 0.00 0.00 37.46 3.55
8819 11127 7.786118 CGTAATGCGTGTTGTATTATTACTGTC 59.214 37.037 0.00 0.00 37.46 3.51
8820 11128 7.843490 AATGCGTGTTGTATTATTACTGTCT 57.157 32.000 0.00 0.00 30.44 3.41
8821 11129 6.641176 TGCGTGTTGTATTATTACTGTCTG 57.359 37.500 0.00 0.00 0.00 3.51
8822 11130 5.579119 TGCGTGTTGTATTATTACTGTCTGG 59.421 40.000 0.00 0.00 0.00 3.86
8823 11131 5.808540 GCGTGTTGTATTATTACTGTCTGGA 59.191 40.000 0.00 0.00 0.00 3.86
8824 11132 6.019801 GCGTGTTGTATTATTACTGTCTGGAG 60.020 42.308 0.00 0.00 0.00 3.86
8825 11133 7.033791 CGTGTTGTATTATTACTGTCTGGAGT 58.966 38.462 0.00 0.00 0.00 3.85
8833 11141 1.343069 ACTGTCTGGAGTTCTGGACC 58.657 55.000 0.00 0.00 0.00 4.46
8852 11160 4.459337 GGACCTAAGAACTGTCCATTTTGG 59.541 45.833 3.14 0.00 46.29 3.28
8893 11203 8.683615 CCTCTGGTGAAGGGTTTAAAAATATAC 58.316 37.037 0.00 0.00 0.00 1.47
8931 11241 2.554893 GGATTGTCAAACGCCAACCTTA 59.445 45.455 0.00 0.00 0.00 2.69
8932 11242 3.561503 GATTGTCAAACGCCAACCTTAC 58.438 45.455 0.00 0.00 0.00 2.34
9006 11422 1.620819 GTCTCCTGCCTGAAGACTTCA 59.379 52.381 16.86 16.86 38.17 3.02
9017 11433 5.006386 CCTGAAGACTTCAATACAGCCTTT 58.994 41.667 18.26 0.00 39.58 3.11
9027 11443 9.515226 ACTTCAATACAGCCTTTTACAAAGATA 57.485 29.630 0.00 0.00 0.00 1.98
9079 11495 6.364945 CCTAGCTGGTTAAATTCTAACAGC 57.635 41.667 17.57 17.57 34.69 4.40
9127 11543 3.634072 CAGCAGCGCACGATAGGC 61.634 66.667 11.47 0.92 43.77 3.93
9136 11552 1.160329 GCACGATAGGCGATGGCTTT 61.160 55.000 0.00 0.00 44.57 3.51
9147 11563 3.243201 GGCGATGGCTTTCTAATTTGGAG 60.243 47.826 0.00 0.00 39.81 3.86
9151 11567 6.049149 CGATGGCTTTCTAATTTGGAGACTA 58.951 40.000 0.00 0.00 0.00 2.59
9154 11570 8.650143 ATGGCTTTCTAATTTGGAGACTAAAA 57.350 30.769 0.00 0.00 0.00 1.52
9155 11571 8.472007 TGGCTTTCTAATTTGGAGACTAAAAA 57.528 30.769 0.00 0.00 0.00 1.94
9194 11611 1.888512 ACAAAACAATCGCAGATGCCT 59.111 42.857 0.00 0.00 45.12 4.75
9206 11625 3.491619 CGCAGATGCCTACATACTCACTT 60.492 47.826 0.00 0.00 36.35 3.16
9244 11675 2.243810 CCCTACCTCTATGAGCACCTC 58.756 57.143 0.00 0.00 0.00 3.85
9262 11693 2.074576 CTCTGAGTTACCGAGTCGACA 58.925 52.381 19.50 0.00 0.00 4.35
9311 11742 5.105917 ACATCGCCGGAAAAACTGAAATAAT 60.106 36.000 5.05 0.00 0.00 1.28
9340 11771 0.952497 ATGCGAGCACCAGTGTCAAG 60.952 55.000 0.00 0.00 0.00 3.02
9342 11774 1.560860 GCGAGCACCAGTGTCAAGTC 61.561 60.000 0.00 0.00 0.00 3.01
9370 11802 5.892348 ACTTGAATCCTGATAGGTTGGTTT 58.108 37.500 0.00 0.00 36.53 3.27
9578 12010 5.537300 AGTCTCTGCATCGGTTAATACAT 57.463 39.130 0.00 0.00 0.00 2.29
9580 12012 4.058124 TCTCTGCATCGGTTAATACATGC 58.942 43.478 0.00 7.99 41.75 4.06
9600 12032 8.051901 ACATGCAACTACCTTTATTACTTTCC 57.948 34.615 0.00 0.00 0.00 3.13
9601 12033 7.122204 ACATGCAACTACCTTTATTACTTTCCC 59.878 37.037 0.00 0.00 0.00 3.97
9602 12034 5.644636 TGCAACTACCTTTATTACTTTCCCG 59.355 40.000 0.00 0.00 0.00 5.14
9603 12035 5.448225 GCAACTACCTTTATTACTTTCCCGC 60.448 44.000 0.00 0.00 0.00 6.13
9604 12036 5.425196 ACTACCTTTATTACTTTCCCGCA 57.575 39.130 0.00 0.00 0.00 5.69
9605 12037 5.807909 ACTACCTTTATTACTTTCCCGCAA 58.192 37.500 0.00 0.00 0.00 4.85
9606 12038 6.240145 ACTACCTTTATTACTTTCCCGCAAA 58.760 36.000 0.00 0.00 0.00 3.68
9607 12039 5.381174 ACCTTTATTACTTTCCCGCAAAC 57.619 39.130 0.00 0.00 0.00 2.93
9608 12040 4.828387 ACCTTTATTACTTTCCCGCAAACA 59.172 37.500 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 3.157252 GATCTGGCGCCTCTCCCA 61.157 66.667 29.70 4.55 0.00 4.37
269 270 0.725117 CCTACGCGCTTCGGATTTTT 59.275 50.000 5.73 0.00 43.86 1.94
362 363 1.070510 GCGCTCGCTATAAAAGAAGGC 60.071 52.381 0.00 0.00 38.26 4.35
363 364 1.527311 GGCGCTCGCTATAAAAGAAGG 59.473 52.381 7.64 0.00 41.60 3.46
364 365 1.190323 CGGCGCTCGCTATAAAAGAAG 59.810 52.381 7.64 0.00 41.60 2.85
365 366 1.202325 TCGGCGCTCGCTATAAAAGAA 60.202 47.619 7.64 0.00 41.60 2.52
366 367 0.382873 TCGGCGCTCGCTATAAAAGA 59.617 50.000 7.64 0.89 41.60 2.52
367 368 0.503117 GTCGGCGCTCGCTATAAAAG 59.497 55.000 7.64 0.00 41.60 2.27
368 369 0.872881 GGTCGGCGCTCGCTATAAAA 60.873 55.000 7.64 0.00 41.60 1.52
369 370 1.299620 GGTCGGCGCTCGCTATAAA 60.300 57.895 7.64 0.00 41.60 1.40
370 371 2.333938 GGTCGGCGCTCGCTATAA 59.666 61.111 7.64 0.00 41.60 0.98
473 501 0.241749 TTAACATCGTGCCGTCGTCT 59.758 50.000 0.00 0.00 0.00 4.18
475 503 0.785979 GTTTAACATCGTGCCGTCGT 59.214 50.000 0.00 0.00 0.00 4.34
571 600 0.316204 ATCCGTTTGAGTCGGTCGTT 59.684 50.000 4.36 0.00 46.86 3.85
572 601 1.167851 TATCCGTTTGAGTCGGTCGT 58.832 50.000 4.36 0.00 46.86 4.34
627 656 4.859304 TTACTTAGAGCAACTCCAACGA 57.141 40.909 0.00 0.00 0.00 3.85
650 679 8.780249 TCTGATTGAGCATATGTATGTTGATTG 58.220 33.333 4.29 0.00 36.11 2.67
651 680 8.781196 GTCTGATTGAGCATATGTATGTTGATT 58.219 33.333 4.29 0.00 36.11 2.57
652 681 7.389884 GGTCTGATTGAGCATATGTATGTTGAT 59.610 37.037 4.29 0.00 42.34 2.57
653 682 6.707608 GGTCTGATTGAGCATATGTATGTTGA 59.292 38.462 4.29 0.00 42.34 3.18
654 683 6.072838 GGGTCTGATTGAGCATATGTATGTTG 60.073 42.308 4.29 0.00 44.40 3.33
655 684 6.000219 GGGTCTGATTGAGCATATGTATGTT 59.000 40.000 4.29 0.00 44.40 2.71
656 685 5.555017 GGGTCTGATTGAGCATATGTATGT 58.445 41.667 4.29 0.00 44.40 2.29
657 686 4.628766 CGGGTCTGATTGAGCATATGTATG 59.371 45.833 4.29 0.00 44.40 2.39
658 687 4.528206 TCGGGTCTGATTGAGCATATGTAT 59.472 41.667 4.29 0.00 44.40 2.29
659 688 3.895041 TCGGGTCTGATTGAGCATATGTA 59.105 43.478 4.29 0.00 44.40 2.29
660 689 2.700371 TCGGGTCTGATTGAGCATATGT 59.300 45.455 4.29 0.00 44.40 2.29
661 690 3.391506 TCGGGTCTGATTGAGCATATG 57.608 47.619 0.00 0.00 44.40 1.78
662 691 4.630644 AATCGGGTCTGATTGAGCATAT 57.369 40.909 4.39 0.00 44.40 1.78
670 699 1.369625 GCGTTCAATCGGGTCTGATT 58.630 50.000 0.00 0.00 39.10 2.57
671 700 0.806102 CGCGTTCAATCGGGTCTGAT 60.806 55.000 0.00 0.00 38.59 2.90
672 701 1.445410 CGCGTTCAATCGGGTCTGA 60.445 57.895 0.00 0.00 38.59 3.27
673 702 3.081133 CGCGTTCAATCGGGTCTG 58.919 61.111 0.00 0.00 38.59 3.51
677 706 1.275657 GCATACGCGTTCAATCGGG 59.724 57.895 20.78 0.00 46.40 5.14
678 707 0.043053 CTGCATACGCGTTCAATCGG 60.043 55.000 20.78 4.05 42.97 4.18
679 708 0.920664 TCTGCATACGCGTTCAATCG 59.079 50.000 20.78 2.12 42.97 3.34
680 709 2.348872 CCATCTGCATACGCGTTCAATC 60.349 50.000 20.78 3.25 42.97 2.67
681 710 1.599071 CCATCTGCATACGCGTTCAAT 59.401 47.619 20.78 0.80 42.97 2.57
682 711 1.006086 CCATCTGCATACGCGTTCAA 58.994 50.000 20.78 0.00 42.97 2.69
683 712 0.809636 CCCATCTGCATACGCGTTCA 60.810 55.000 20.78 12.68 42.97 3.18
684 713 0.529773 TCCCATCTGCATACGCGTTC 60.530 55.000 20.78 8.07 42.97 3.95
685 714 0.107897 TTCCCATCTGCATACGCGTT 60.108 50.000 20.78 1.87 42.97 4.84
686 715 0.107897 TTTCCCATCTGCATACGCGT 60.108 50.000 19.17 19.17 42.97 6.01
687 716 1.013596 TTTTCCCATCTGCATACGCG 58.986 50.000 3.53 3.53 42.97 6.01
704 733 7.605309 GGTTACCTGCACAGTACTATAGTTTTT 59.395 37.037 11.40 0.00 0.00 1.94
705 734 7.101700 GGTTACCTGCACAGTACTATAGTTTT 58.898 38.462 11.40 0.00 0.00 2.43
706 735 6.211986 TGGTTACCTGCACAGTACTATAGTTT 59.788 38.462 11.40 0.00 0.00 2.66
707 736 5.718130 TGGTTACCTGCACAGTACTATAGTT 59.282 40.000 11.40 0.00 0.00 2.24
708 737 5.266788 TGGTTACCTGCACAGTACTATAGT 58.733 41.667 10.87 10.87 0.00 2.12
709 738 5.593095 TCTGGTTACCTGCACAGTACTATAG 59.407 44.000 2.07 0.00 32.92 1.31
710 739 5.359009 GTCTGGTTACCTGCACAGTACTATA 59.641 44.000 2.07 0.00 32.92 1.31
711 740 4.159879 GTCTGGTTACCTGCACAGTACTAT 59.840 45.833 2.07 0.00 32.92 2.12
712 741 3.508793 GTCTGGTTACCTGCACAGTACTA 59.491 47.826 2.07 0.00 32.92 1.82
713 742 2.299297 GTCTGGTTACCTGCACAGTACT 59.701 50.000 2.07 0.00 32.92 2.73
714 743 2.685100 GTCTGGTTACCTGCACAGTAC 58.315 52.381 2.07 0.00 32.92 2.73
715 744 1.271379 CGTCTGGTTACCTGCACAGTA 59.729 52.381 2.07 0.00 32.92 2.74
716 745 0.033504 CGTCTGGTTACCTGCACAGT 59.966 55.000 2.07 0.00 32.92 3.55
717 746 1.291877 GCGTCTGGTTACCTGCACAG 61.292 60.000 2.07 0.00 0.00 3.66
718 747 1.301401 GCGTCTGGTTACCTGCACA 60.301 57.895 2.07 0.00 0.00 4.57
719 748 0.673644 ATGCGTCTGGTTACCTGCAC 60.674 55.000 11.76 6.94 34.86 4.57
720 749 0.391130 GATGCGTCTGGTTACCTGCA 60.391 55.000 2.07 8.18 36.69 4.41
721 750 1.090052 GGATGCGTCTGGTTACCTGC 61.090 60.000 5.77 2.37 0.00 4.85
722 751 0.806102 CGGATGCGTCTGGTTACCTG 60.806 60.000 6.88 1.81 0.00 4.00
723 752 1.255667 ACGGATGCGTCTGGTTACCT 61.256 55.000 18.91 0.00 34.90 3.08
724 753 0.457035 TACGGATGCGTCTGGTTACC 59.543 55.000 17.88 0.00 34.90 2.85
725 754 1.133790 ACTACGGATGCGTCTGGTTAC 59.866 52.381 17.88 0.00 34.90 2.50
726 755 1.133598 CACTACGGATGCGTCTGGTTA 59.866 52.381 17.88 0.00 34.90 2.85
727 756 0.108804 CACTACGGATGCGTCTGGTT 60.109 55.000 17.88 1.47 34.90 3.67
728 757 0.963856 TCACTACGGATGCGTCTGGT 60.964 55.000 17.88 11.17 34.90 4.00
729 758 0.525668 GTCACTACGGATGCGTCTGG 60.526 60.000 17.88 10.50 34.90 3.86
730 759 0.525668 GGTCACTACGGATGCGTCTG 60.526 60.000 17.88 13.12 36.76 3.51
731 760 1.807886 GGTCACTACGGATGCGTCT 59.192 57.895 17.88 0.00 0.00 4.18
732 761 1.585521 CGGTCACTACGGATGCGTC 60.586 63.158 17.88 0.34 0.00 5.19
733 762 2.488355 CGGTCACTACGGATGCGT 59.512 61.111 18.47 18.47 0.00 5.24
734 763 2.954868 GCGGTCACTACGGATGCG 60.955 66.667 4.58 4.58 0.00 4.73
735 764 2.954868 CGCGGTCACTACGGATGC 60.955 66.667 0.00 0.00 0.00 3.91
749 778 2.052157 GAGAAGATATTTCGGACCGCG 58.948 52.381 9.66 0.00 0.00 6.46
752 781 5.929415 GGAATCTGAGAAGATATTTCGGACC 59.071 44.000 0.00 0.00 0.00 4.46
794 823 2.834549 ACGGAGTGAAGATCCAACTGAT 59.165 45.455 0.00 0.00 42.51 2.90
795 824 2.248248 ACGGAGTGAAGATCCAACTGA 58.752 47.619 0.00 0.00 42.51 3.41
822 851 4.489771 GGGTGGGACGGAGGCATG 62.490 72.222 0.00 0.00 0.00 4.06
1073 1106 2.311841 AGGGTTAGGGTTTTGATCTGGG 59.688 50.000 0.00 0.00 0.00 4.45
1159 1192 2.787866 CCCTTCCTCCCCTCTCCA 59.212 66.667 0.00 0.00 0.00 3.86
1289 1322 1.144936 GGAGTGGAAGATGCCGAGG 59.855 63.158 0.00 0.00 0.00 4.63
1368 1401 4.399934 GCCCCAACTAAATCAATTCCGTAA 59.600 41.667 0.00 0.00 0.00 3.18
1409 1442 2.614983 TCAACCCGAGAAAACGAAAAGG 59.385 45.455 0.00 0.00 35.09 3.11
1460 1493 9.449719 GGACTCACCTTTCTATAAAATCAAAGA 57.550 33.333 0.00 0.00 35.41 2.52
1569 1602 4.677182 ACAAATCTCAGCACCCCTAAATT 58.323 39.130 0.00 0.00 0.00 1.82
1578 1611 5.869753 ATGTGTAAGACAAATCTCAGCAC 57.130 39.130 0.00 0.00 38.36 4.40
1581 1614 8.763049 TCAACTATGTGTAAGACAAATCTCAG 57.237 34.615 0.00 0.00 38.36 3.35
1601 1634 7.605691 CAGTAATCTGAATCTGGTTCTTCAACT 59.394 37.037 1.90 0.00 43.76 3.16
1633 1666 2.758423 ACAAGAAGACGTTGGGCTTTTT 59.242 40.909 0.00 0.00 0.00 1.94
1644 1677 2.431057 ACATAGGCCCTACAAGAAGACG 59.569 50.000 0.00 0.00 0.00 4.18
1755 1795 2.279935 TTACCATGCCGTTTTGTCCT 57.720 45.000 0.00 0.00 0.00 3.85
1756 1796 2.477189 CGATTACCATGCCGTTTTGTCC 60.477 50.000 0.00 0.00 0.00 4.02
1757 1797 2.160813 ACGATTACCATGCCGTTTTGTC 59.839 45.455 0.00 0.00 30.41 3.18
1758 1798 2.156098 ACGATTACCATGCCGTTTTGT 58.844 42.857 0.00 0.00 30.41 2.83
1759 1799 2.911819 ACGATTACCATGCCGTTTTG 57.088 45.000 0.00 0.00 30.41 2.44
1760 1800 2.669950 GCAACGATTACCATGCCGTTTT 60.670 45.455 0.00 0.00 42.38 2.43
1761 1801 1.135517 GCAACGATTACCATGCCGTTT 60.136 47.619 0.00 0.00 42.38 3.60
1762 1802 0.450184 GCAACGATTACCATGCCGTT 59.550 50.000 0.00 0.00 44.67 4.44
1773 1813 9.774742 GATATTTTCTACTTCAAAGCAACGATT 57.225 29.630 0.00 0.00 0.00 3.34
1790 1830 6.183360 CGAAAAGATGCCAGGTGATATTTTCT 60.183 38.462 20.26 1.05 37.51 2.52
1802 1843 2.636830 AGATGGTCGAAAAGATGCCAG 58.363 47.619 0.00 0.00 29.84 4.85
1927 1968 1.360192 GCAGCCACCAAAGACACAC 59.640 57.895 0.00 0.00 0.00 3.82
1928 1969 0.467844 ATGCAGCCACCAAAGACACA 60.468 50.000 0.00 0.00 0.00 3.72
1965 2006 2.838813 AGAACCCCAAGCCTAAGTAGAC 59.161 50.000 0.00 0.00 0.00 2.59
1966 2007 3.200958 AGAACCCCAAGCCTAAGTAGA 57.799 47.619 0.00 0.00 0.00 2.59
1979 2020 1.408453 CGGAGGTCCCATAGAACCCC 61.408 65.000 0.00 0.00 29.47 4.95
2027 2078 5.306937 TCAAGAGAGGACTCCAACACATTAA 59.693 40.000 0.00 0.00 43.53 1.40
2038 2089 6.934083 AGAAAGACAATTTCAAGAGAGGACTC 59.066 38.462 3.44 0.00 42.90 3.36
2042 2093 9.061435 ACTTAAGAAAGACAATTTCAAGAGAGG 57.939 33.333 10.09 0.00 36.50 3.69
2070 2121 9.713684 TCCTATGGTTTCCATTTAATTTCTCAT 57.286 29.630 6.59 0.00 42.23 2.90
2074 2125 7.706607 GTGCTCCTATGGTTTCCATTTAATTTC 59.293 37.037 6.59 0.00 42.23 2.17
2090 2141 4.395854 TGTGTGCAAATTAGTGCTCCTATG 59.604 41.667 3.90 0.00 45.17 2.23
2091 2142 4.588899 TGTGTGCAAATTAGTGCTCCTAT 58.411 39.130 3.90 0.00 45.17 2.57
2120 2171 5.357032 GTGAGGAAGGTTTTCAAGACTCAAA 59.643 40.000 0.00 0.00 33.01 2.69
2206 2257 5.242069 TGTCGATTGAAAAGTTTCAGCAA 57.758 34.783 6.58 0.00 46.68 3.91
2207 2258 4.891627 TGTCGATTGAAAAGTTTCAGCA 57.108 36.364 6.58 0.00 46.68 4.41
2269 2320 7.086376 CCCAATAATTCTGAAATAAGGCATCG 58.914 38.462 0.00 0.00 0.00 3.84
2304 2355 7.201741 GCTCTTTCTGAAGGAAAATATACCACC 60.202 40.741 3.74 0.00 42.52 4.61
2306 2357 7.402054 TGCTCTTTCTGAAGGAAAATATACCA 58.598 34.615 3.74 0.00 42.52 3.25
2387 2438 8.099364 ACAGGTCATACAGTAAATTTCAACTG 57.901 34.615 16.24 16.24 46.84 3.16
2409 2460 6.931281 AGTGCCAGCAATAAGTACATATACAG 59.069 38.462 0.00 0.00 33.30 2.74
2457 2508 5.120363 GGACAATCGAGAAACTTACCAGAAC 59.880 44.000 0.00 0.00 0.00 3.01
2474 2525 4.937201 ACCAAACCTTTTGAGGACAATC 57.063 40.909 0.00 0.00 35.85 2.67
2495 2546 6.696441 TTAAGAACTCGGGTTTAGCAAAAA 57.304 33.333 0.15 0.00 35.58 1.94
2548 2599 9.491675 TTCACTAACAAAGGTGATAAAACGATA 57.508 29.630 0.00 0.00 41.27 2.92
2687 2739 9.585099 GATATACAGGAGAATGATGAGATCAAC 57.415 37.037 0.00 0.00 43.50 3.18
2694 2746 8.927411 TGACTTTGATATACAGGAGAATGATGA 58.073 33.333 0.00 0.00 0.00 2.92
2702 2754 6.215121 CAGCTCTGACTTTGATATACAGGAG 58.785 44.000 0.00 0.00 0.00 3.69
2818 2871 8.674263 AAACTCATCATCATAGAAGGATGTTC 57.326 34.615 0.00 0.00 42.16 3.18
2819 2872 9.471702 AAAAACTCATCATCATAGAAGGATGTT 57.528 29.630 0.00 0.00 42.16 2.71
3034 3104 4.670896 CCAACAATTTGGTGAAGGAACT 57.329 40.909 16.01 0.00 46.63 3.01
3096 3208 0.184933 AAGCTGGGTTGCAAGGTACA 59.815 50.000 0.00 0.00 34.99 2.90
3119 3231 6.597672 TCCATGAGTACCAACAAATGTCATAC 59.402 38.462 0.00 0.00 0.00 2.39
3167 3280 1.625818 CTACAAGAGTGGGTCCAGCTT 59.374 52.381 0.00 0.00 0.00 3.74
3382 3495 1.480954 GATCTGTACAAGAAGCCCGGA 59.519 52.381 0.73 0.00 38.79 5.14
3385 3498 4.207891 TGAAGATCTGTACAAGAAGCCC 57.792 45.455 0.00 0.00 38.79 5.19
3420 3533 6.636454 ATTCCAAGGGATGTAGACTTGTAA 57.364 37.500 0.00 0.00 39.85 2.41
3578 3691 7.562088 AGACTTATTACCTAGCTTAGCAAGTCT 59.438 37.037 19.57 19.57 42.81 3.24
3698 3811 2.551270 AGGAGCAAGTGGTGATAAGGA 58.449 47.619 0.00 0.00 0.00 3.36
3726 3839 9.503399 ACATTCCTAACTTACCTAAAACTCAAG 57.497 33.333 0.00 0.00 0.00 3.02
3750 3863 4.691376 GCCCATGGTATTCATTTCCCTACA 60.691 45.833 11.73 0.00 32.92 2.74
3859 3974 1.068194 CAAGATATCGACTCTCCCCGC 60.068 57.143 0.00 0.00 0.00 6.13
3860 3975 1.068194 GCAAGATATCGACTCTCCCCG 60.068 57.143 0.00 0.00 0.00 5.73
3963 4080 9.716531 CCATCTCTCTTTTGTATGCATAATCTA 57.283 33.333 8.28 0.00 0.00 1.98
3964 4081 7.174599 GCCATCTCTCTTTTGTATGCATAATCT 59.825 37.037 8.28 0.00 0.00 2.40
3965 4082 7.303998 GCCATCTCTCTTTTGTATGCATAATC 58.696 38.462 8.28 0.00 0.00 1.75
3966 4083 6.208204 GGCCATCTCTCTTTTGTATGCATAAT 59.792 38.462 8.28 0.00 0.00 1.28
3967 4084 5.532406 GGCCATCTCTCTTTTGTATGCATAA 59.468 40.000 8.28 0.00 0.00 1.90
3969 4086 3.887716 GGCCATCTCTCTTTTGTATGCAT 59.112 43.478 3.79 3.79 0.00 3.96
3970 4087 3.282021 GGCCATCTCTCTTTTGTATGCA 58.718 45.455 0.00 0.00 0.00 3.96
3971 4088 2.289002 CGGCCATCTCTCTTTTGTATGC 59.711 50.000 2.24 0.00 0.00 3.14
3972 4089 2.289002 GCGGCCATCTCTCTTTTGTATG 59.711 50.000 2.24 0.00 0.00 2.39
3973 4090 2.092968 TGCGGCCATCTCTCTTTTGTAT 60.093 45.455 2.24 0.00 0.00 2.29
3974 4091 1.277842 TGCGGCCATCTCTCTTTTGTA 59.722 47.619 2.24 0.00 0.00 2.41
4168 4410 7.264373 TCTTTGCTTAAGTCAAAAGGAAGAG 57.736 36.000 18.94 10.38 35.97 2.85
4206 4448 3.554337 GCTGAGAAAACGAGGGACTTACA 60.554 47.826 0.00 0.00 41.55 2.41
4301 4559 6.216868 AGGTACCAATTGTTATGAACCCTAGT 59.783 38.462 15.94 0.00 0.00 2.57
4305 4563 5.258051 TCAGGTACCAATTGTTATGAACCC 58.742 41.667 15.94 0.00 0.00 4.11
4326 4584 0.253044 GAGCCATGGTAACTGCCTCA 59.747 55.000 14.67 0.00 37.61 3.86
4366 4624 4.520179 TCATGTGCAGCTATGACTTCAAT 58.480 39.130 8.34 0.00 0.00 2.57
4368 4626 3.615224 TCATGTGCAGCTATGACTTCA 57.385 42.857 8.34 0.00 0.00 3.02
4381 4639 6.348295 CCTGATGCTAATCATAGTTCATGTGC 60.348 42.308 0.00 0.00 41.97 4.57
4521 4781 1.662438 GAGCTCCTCCGTCAGACCTG 61.662 65.000 0.87 0.00 0.00 4.00
4560 4820 1.699634 AGTTGTGGCTATGACAGTGGT 59.300 47.619 0.00 0.00 0.00 4.16
4606 4866 3.366739 AACGGCGTGCTACTAGGGC 62.367 63.158 15.70 0.00 0.00 5.19
4669 4929 5.723887 AGAAGAAATTAGAGAGGAAGGAGCA 59.276 40.000 0.00 0.00 0.00 4.26
4709 4969 2.158534 AGATCAGCTCGAGGAGGTATGT 60.159 50.000 15.58 0.00 38.40 2.29
4749 5009 0.449388 GCCATGTGCTTGCACTAGAC 59.551 55.000 23.53 9.65 36.87 2.59
4788 5048 1.896660 GCAAGGCCAACGAACTCCA 60.897 57.895 5.01 0.00 0.00 3.86
5042 5302 4.291249 AGGTGTTCCTCTCTCTAAGTCTCT 59.709 45.833 0.00 0.00 40.58 3.10
5043 5303 4.398044 CAGGTGTTCCTCTCTCTAAGTCTC 59.602 50.000 0.00 0.00 43.07 3.36
5228 6130 0.465705 TCTTCCATGAGGCCGTGATC 59.534 55.000 0.00 0.00 33.74 2.92
5232 6134 1.528824 CCATCTTCCATGAGGCCGT 59.471 57.895 0.00 0.00 33.74 5.68
5248 6150 1.363246 TGCACCATAACACTACCCCA 58.637 50.000 0.00 0.00 0.00 4.96
5337 6239 2.997315 CCGAGCCACCTCTGGACA 60.997 66.667 0.00 0.00 40.55 4.02
5340 6242 2.303549 CTAAGCCGAGCCACCTCTGG 62.304 65.000 0.00 0.00 41.13 3.86
5422 6324 6.739331 AGTAGTTTAGCTCAGCTATCCAAT 57.261 37.500 7.36 0.00 41.01 3.16
5457 6370 9.178758 GAGAGAGAGAGAGAGAGAGTTTATTTT 57.821 37.037 0.00 0.00 0.00 1.82
5482 6413 4.561530 GCCAAGTTATCCATCTCGCTATGA 60.562 45.833 0.00 0.00 0.00 2.15
5483 6414 3.681897 GCCAAGTTATCCATCTCGCTATG 59.318 47.826 0.00 0.00 0.00 2.23
5541 6476 1.031235 CACCCATTGCAACACACAGA 58.969 50.000 0.00 0.00 0.00 3.41
5555 6546 6.686484 ATCACTAGAATATATGTGCACCCA 57.314 37.500 15.69 1.56 0.00 4.51
5563 6554 9.645059 ATCGGTGTTGAATCACTAGAATATATG 57.355 33.333 0.00 0.00 38.28 1.78
5638 6629 2.191354 GACGACGTCGATGTGGGACA 62.191 60.000 41.52 0.00 43.02 4.02
5662 6653 0.248012 ACGTTATGCCACACGATCCA 59.752 50.000 5.33 0.00 39.76 3.41
5738 6730 7.111247 TCAAGTAATTGCCTTGATTTATGGG 57.889 36.000 14.79 0.00 42.43 4.00
5757 6749 6.316390 GCATAGTGCAGTTAAATACCTCAAGT 59.684 38.462 0.00 0.00 44.26 3.16
5783 6775 8.671028 GTTCTTTTCCACTTTAGACTACAACAA 58.329 33.333 0.00 0.00 0.00 2.83
5799 6791 5.677319 ATGGAGAGTATCGTTCTTTTCCA 57.323 39.130 0.00 0.00 42.67 3.53
5828 6820 1.355718 AATGGATGGGCGGGATCACT 61.356 55.000 0.00 0.00 0.00 3.41
5836 6828 0.031585 CATTGAGCAATGGATGGGCG 59.968 55.000 13.94 0.00 43.25 6.13
5841 7001 6.131264 TGGAAAGTATCATTGAGCAATGGAT 58.869 36.000 19.71 14.55 46.08 3.41
5954 7125 3.412386 CCCCACAAAACAAAAACCAACA 58.588 40.909 0.00 0.00 0.00 3.33
5973 7144 3.202829 TGGTAATCTAAACCGATGCCC 57.797 47.619 0.00 0.00 40.08 5.36
6154 7325 2.486191 GGAGGGTGAGATGTTATGCAGG 60.486 54.545 0.00 0.00 0.00 4.85
6231 7403 2.381911 GGTCAATACCACGGGACTCTA 58.618 52.381 0.00 0.00 45.98 2.43
6382 7554 6.367374 TGTGTGTATGGACTTCTATTTCCA 57.633 37.500 0.00 0.00 46.06 3.53
6421 7593 5.217393 CACAAGAATATGTGCATACATGGC 58.783 41.667 0.00 0.00 46.63 4.40
6447 7619 4.646945 TGTTTGGTTTGATTAGGCACTTGA 59.353 37.500 0.00 0.00 41.75 3.02
6609 7783 0.607489 GAGCAGTCCAGGTGCAACAT 60.607 55.000 3.64 0.00 43.82 2.71
6663 8860 1.693640 CCATGGAGAGGGCTTGGTT 59.306 57.895 5.56 0.00 0.00 3.67
6712 8909 3.730761 GCTCCTTGTGGCACTGCG 61.731 66.667 19.83 6.79 0.00 5.18
6731 8928 0.179018 AGTTCAACTGGGAGGTGTGC 60.179 55.000 0.00 0.00 33.77 4.57
6754 8951 2.751837 TGTGTTGCACAACGGCCA 60.752 55.556 2.24 3.24 41.69 5.36
6890 9087 1.449601 TTAGGCTACAGCAAGCGGC 60.450 57.895 3.24 0.00 43.74 6.53
6920 9117 3.071206 ATCGTCTCCTGCAGCGGT 61.071 61.111 8.66 0.00 0.00 5.68
7126 9394 3.476031 CTCCAAGTGTGGCGTGGGT 62.476 63.158 0.00 0.00 45.54 4.51
7214 9482 1.887854 TGCAGTCAACAATGATGGTGG 59.112 47.619 0.00 0.00 44.73 4.61
7249 9517 2.313317 ACACTAACGTGAGAACCCTCA 58.687 47.619 7.01 0.00 46.48 3.86
7391 9663 9.582431 CAATCAAGCAACAAATGAAGAGATTAT 57.418 29.630 0.00 0.00 0.00 1.28
7588 9862 7.291566 TCCTATTTTCACTTGGTTAAGTTCCA 58.708 34.615 0.00 0.00 44.57 3.53
7727 10001 6.338214 TCAAGATCTATGCCTACTGATGTC 57.662 41.667 0.00 0.00 0.00 3.06
7738 10012 7.572724 GCACCATAGTCAATTCAAGATCTATGC 60.573 40.741 0.00 0.00 35.71 3.14
7800 10077 6.806668 TGTAGGTATTCCTCATCATGAACA 57.193 37.500 0.00 0.00 43.94 3.18
7825 10102 3.123050 GTGTTTCATTTGCCAGTTCCAC 58.877 45.455 0.00 0.00 0.00 4.02
7883 10160 8.928733 ACAGAACAAATGATGAATATGTTTTGC 58.071 29.630 7.21 0.00 38.77 3.68
8205 10503 3.725740 GCAAGTGTTTGTCTTCAATGTCG 59.274 43.478 0.00 0.00 36.65 4.35
8288 10586 2.938451 TGAACTATTCTGCATGGCTTCG 59.062 45.455 0.00 0.00 0.00 3.79
8417 10715 4.202264 ACGAAGAGAAGAAACCATCACACT 60.202 41.667 0.00 0.00 0.00 3.55
8422 10720 4.570930 AGGAACGAAGAGAAGAAACCATC 58.429 43.478 0.00 0.00 0.00 3.51
8423 10721 4.570930 GAGGAACGAAGAGAAGAAACCAT 58.429 43.478 0.00 0.00 0.00 3.55
8436 10734 2.487762 ACGGTATTGTACGAGGAACGAA 59.512 45.455 11.23 0.00 45.77 3.85
8439 10737 5.915196 GGTATTACGGTATTGTACGAGGAAC 59.085 44.000 0.00 0.00 0.00 3.62
8524 10822 4.803088 TGCTTGACTTGCATTTGTACAAAC 59.197 37.500 22.78 12.00 35.31 2.93
8525 10823 5.003692 TGCTTGACTTGCATTTGTACAAA 57.996 34.783 22.58 22.58 35.31 2.83
8526 10824 4.645762 TGCTTGACTTGCATTTGTACAA 57.354 36.364 3.59 3.59 35.31 2.41
8527 10825 4.499526 CCTTGCTTGACTTGCATTTGTACA 60.500 41.667 0.00 0.00 40.34 2.90
8528 10826 3.983344 CCTTGCTTGACTTGCATTTGTAC 59.017 43.478 0.00 0.00 40.34 2.90
8529 10827 3.888323 TCCTTGCTTGACTTGCATTTGTA 59.112 39.130 0.00 0.00 40.34 2.41
8530 10828 2.694628 TCCTTGCTTGACTTGCATTTGT 59.305 40.909 0.00 0.00 40.34 2.83
8531 10829 3.314553 CTCCTTGCTTGACTTGCATTTG 58.685 45.455 0.00 0.00 40.34 2.32
8532 10830 2.298163 CCTCCTTGCTTGACTTGCATTT 59.702 45.455 0.00 0.00 40.34 2.32
8533 10831 1.891150 CCTCCTTGCTTGACTTGCATT 59.109 47.619 0.00 0.00 40.34 3.56
8534 10832 1.542492 CCTCCTTGCTTGACTTGCAT 58.458 50.000 0.00 0.00 40.34 3.96
8635 10943 8.281212 ACTAAAGACAAGTCAATGTGAAAACT 57.719 30.769 2.72 0.00 32.57 2.66
8642 10950 8.281212 AGAAACAACTAAAGACAAGTCAATGT 57.719 30.769 2.72 0.00 35.90 2.71
8652 10960 5.978934 TCCGACAAGAAACAACTAAAGAC 57.021 39.130 0.00 0.00 0.00 3.01
8672 10980 3.594603 TGTAGCAGCTCAACTACTTCC 57.405 47.619 15.49 0.00 39.60 3.46
8801 11109 8.773404 AACTCCAGACAGTAATAATACAACAC 57.227 34.615 0.00 0.00 34.29 3.32
8818 11126 3.827817 TCTTAGGTCCAGAACTCCAGA 57.172 47.619 0.00 0.00 0.00 3.86
8819 11127 4.195225 GTTCTTAGGTCCAGAACTCCAG 57.805 50.000 12.73 0.00 44.65 3.86
8833 11141 7.542130 GCATAAACCAAAATGGACAGTTCTTAG 59.458 37.037 2.85 0.00 40.96 2.18
8893 11203 0.880441 TCCGTGCATGTTCATGGTTG 59.120 50.000 13.55 0.00 42.39 3.77
8931 11241 5.560953 GCAACGTTTGAGATTTCAGCTAAGT 60.561 40.000 0.00 0.00 34.15 2.24
8932 11242 4.848299 GCAACGTTTGAGATTTCAGCTAAG 59.152 41.667 0.00 0.00 34.15 2.18
9027 11443 6.974622 CACTTTGTTGTGTTTCTTAGCAGAAT 59.025 34.615 0.00 0.00 38.89 2.40
9075 11491 6.820335 TGCTCTAAGTATGTTCATATGCTGT 58.180 36.000 0.00 0.00 0.00 4.40
9076 11492 7.719778 TTGCTCTAAGTATGTTCATATGCTG 57.280 36.000 0.00 0.00 0.00 4.41
9094 11510 2.874701 CTGCTGCGGTTATATTTGCTCT 59.125 45.455 0.00 0.00 0.00 4.09
9121 11537 5.335191 CCAAATTAGAAAGCCATCGCCTATC 60.335 44.000 0.00 0.00 34.57 2.08
9127 11543 4.878397 AGTCTCCAAATTAGAAAGCCATCG 59.122 41.667 0.00 0.00 0.00 3.84
9194 11611 6.034150 CGTGCGTTCATAAAAGTGAGTATGTA 59.966 38.462 0.00 0.00 0.00 2.29
9206 11625 0.236187 GGTGTGCGTGCGTTCATAAA 59.764 50.000 0.00 0.00 0.00 1.40
9244 11675 1.130749 CCTGTCGACTCGGTAACTCAG 59.869 57.143 17.92 1.16 0.00 3.35
9275 11706 1.286354 GGCGATGTTCGTTCAACGGA 61.286 55.000 10.69 0.00 42.81 4.69
9279 11710 0.600518 TTCCGGCGATGTTCGTTCAA 60.601 50.000 9.30 0.00 42.81 2.69
9311 11742 2.360483 TGGTGCTCGCATTTTTCTGAAA 59.640 40.909 0.00 0.00 0.00 2.69
9340 11771 5.836358 ACCTATCAGGATTCAAGTCCTAGAC 59.164 44.000 0.00 0.00 46.85 2.59
9342 11774 6.463614 CCAACCTATCAGGATTCAAGTCCTAG 60.464 46.154 0.00 0.00 46.85 3.02
9361 11793 4.204799 GTTCCTTGTAGTGAAACCAACCT 58.795 43.478 0.00 0.00 37.80 3.50
9364 11796 4.513406 AGGTTCCTTGTAGTGAAACCAA 57.487 40.909 5.47 0.00 37.80 3.67
9370 11802 5.046591 CAGATGGTTAGGTTCCTTGTAGTGA 60.047 44.000 0.00 0.00 0.00 3.41
9405 11837 5.725110 ATCAACATGTAGACTTGCGAATC 57.275 39.130 0.00 0.00 0.00 2.52
9406 11838 9.494271 AATATATCAACATGTAGACTTGCGAAT 57.506 29.630 0.00 0.00 0.00 3.34
9442 11874 1.001378 GCTTCATGGTTTTGCTGACGT 60.001 47.619 0.00 0.00 0.00 4.34
9557 11989 4.084328 GCATGTATTAACCGATGCAGAGAC 60.084 45.833 0.00 0.00 40.78 3.36
9578 12010 5.644636 CGGGAAAGTAATAAAGGTAGTTGCA 59.355 40.000 0.00 0.00 0.00 4.08
9580 12012 5.644636 TGCGGGAAAGTAATAAAGGTAGTTG 59.355 40.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.