Multiple sequence alignment - TraesCS7A01G357200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G357200 chr7A 100.000 3025 0 0 1 3025 524638347 524641371 0.000000e+00 5587.0
1 TraesCS7A01G357200 chr7A 97.647 85 2 0 355 439 524638615 524638699 2.430000e-31 147.0
2 TraesCS7A01G357200 chr7A 97.647 85 2 0 269 353 524638701 524638785 2.430000e-31 147.0
3 TraesCS7A01G357200 chr7D 85.210 2522 179 88 580 3025 471933277 471930874 0.000000e+00 2412.0
4 TraesCS7A01G357200 chr7D 84.000 250 21 8 355 585 471933558 471933309 3.930000e-54 222.0
5 TraesCS7A01G357200 chr7D 84.685 111 13 4 143 253 160483612 160483506 1.150000e-19 108.0
6 TraesCS7A01G357200 chr7B 85.337 2496 164 84 619 3025 495760029 495757647 0.000000e+00 2396.0
7 TraesCS7A01G357200 chr7B 84.685 111 15 1 143 253 669130109 669130001 3.190000e-20 110.0
8 TraesCS7A01G357200 chr7B 83.784 111 16 1 143 253 477422622 477422514 1.480000e-18 104.0
9 TraesCS7A01G357200 chr7B 88.679 53 6 0 260 312 71235435 71235487 7.000000e-07 65.8
10 TraesCS7A01G357200 chr7B 97.143 35 1 0 364 398 71235453 71235487 3.260000e-05 60.2
11 TraesCS7A01G357200 chr1D 95.902 122 5 0 19 140 430108227 430108106 6.610000e-47 198.0
12 TraesCS7A01G357200 chr1D 84.071 113 14 4 147 257 483526107 483526217 4.120000e-19 106.0
13 TraesCS7A01G357200 chr2D 92.366 131 10 0 19 149 619720672 619720542 1.430000e-43 187.0
14 TraesCS7A01G357200 chr6B 92.308 130 10 0 18 147 658580279 658580150 5.150000e-43 185.0
15 TraesCS7A01G357200 chr4B 91.729 133 11 0 16 148 9956924 9956792 5.150000e-43 185.0
16 TraesCS7A01G357200 chr4A 93.496 123 8 0 18 140 652852365 652852243 1.850000e-42 183.0
17 TraesCS7A01G357200 chr4A 93.496 123 8 0 18 140 686582242 686582120 1.850000e-42 183.0
18 TraesCS7A01G357200 chr5A 91.538 130 10 1 18 147 395389873 395389745 8.620000e-41 178.0
19 TraesCS7A01G357200 chr5A 91.538 130 10 1 18 147 532811641 532811513 8.620000e-41 178.0
20 TraesCS7A01G357200 chr5A 82.883 111 16 2 144 253 548727467 548727359 2.480000e-16 97.1
21 TraesCS7A01G357200 chr3D 89.855 138 13 1 10 147 354082273 354082409 3.100000e-40 176.0
22 TraesCS7A01G357200 chr3D 85.047 107 11 3 152 255 335627554 335627450 1.480000e-18 104.0
23 TraesCS7A01G357200 chrUn 85.586 111 12 2 143 253 114244618 114244724 2.460000e-21 113.0
24 TraesCS7A01G357200 chr3A 84.685 111 15 1 143 253 436431750 436431858 3.190000e-20 110.0
25 TraesCS7A01G357200 chr3B 75.088 285 44 13 78 341 73689500 73689222 1.150000e-19 108.0
26 TraesCS7A01G357200 chr6D 81.452 124 21 2 143 266 98124987 98125108 1.920000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G357200 chr7A 524638347 524641371 3024 False 1960.333333 5587 98.431333 1 3025 3 chr7A.!!$F1 3024
1 TraesCS7A01G357200 chr7D 471930874 471933558 2684 True 1317.000000 2412 84.605000 355 3025 2 chr7D.!!$R2 2670
2 TraesCS7A01G357200 chr7B 495757647 495760029 2382 True 2396.000000 2396 85.337000 619 3025 1 chr7B.!!$R2 2406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 866 0.03831 CCTTCCTTTTCCGCCTTCCT 59.962 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2652 2773 0.583438 GTATACACATGCTGCAGGCG 59.417 55.0 17.12 7.57 45.43 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.707793 CGCAAGTACTCATACTTCCTCC 58.292 50.000 0.00 0.00 46.73 4.30
28 29 3.707793 GCAAGTACTCATACTTCCTCCG 58.292 50.000 0.00 0.00 46.73 4.63
29 30 3.130693 GCAAGTACTCATACTTCCTCCGT 59.869 47.826 0.00 0.00 46.73 4.69
30 31 4.381718 GCAAGTACTCATACTTCCTCCGTT 60.382 45.833 0.00 0.00 46.73 4.44
31 32 5.341617 CAAGTACTCATACTTCCTCCGTTC 58.658 45.833 0.00 0.00 46.73 3.95
32 33 3.626670 AGTACTCATACTTCCTCCGTTCG 59.373 47.826 0.00 0.00 38.59 3.95
33 34 1.749634 ACTCATACTTCCTCCGTTCGG 59.250 52.381 4.74 4.74 0.00 4.30
34 35 2.022195 CTCATACTTCCTCCGTTCGGA 58.978 52.381 13.34 13.34 0.00 4.55
35 36 2.426024 CTCATACTTCCTCCGTTCGGAA 59.574 50.000 14.79 0.00 38.18 4.30
36 37 2.827322 TCATACTTCCTCCGTTCGGAAA 59.173 45.455 14.79 6.77 39.86 3.13
37 38 3.449737 TCATACTTCCTCCGTTCGGAAAT 59.550 43.478 14.79 2.39 39.86 2.17
38 39 4.646040 TCATACTTCCTCCGTTCGGAAATA 59.354 41.667 14.79 4.30 39.86 1.40
39 40 5.303589 TCATACTTCCTCCGTTCGGAAATAT 59.696 40.000 14.79 6.13 39.86 1.28
40 41 4.482952 ACTTCCTCCGTTCGGAAATATT 57.517 40.909 14.79 0.00 39.86 1.28
41 42 4.840271 ACTTCCTCCGTTCGGAAATATTT 58.160 39.130 14.79 0.00 39.86 1.40
42 43 4.634443 ACTTCCTCCGTTCGGAAATATTTG 59.366 41.667 14.79 1.97 39.86 2.32
43 44 4.210724 TCCTCCGTTCGGAAATATTTGT 57.789 40.909 14.79 0.00 33.41 2.83
44 45 4.186159 TCCTCCGTTCGGAAATATTTGTC 58.814 43.478 14.79 0.00 33.41 3.18
45 46 3.936453 CCTCCGTTCGGAAATATTTGTCA 59.064 43.478 14.79 0.00 33.41 3.58
46 47 4.574828 CCTCCGTTCGGAAATATTTGTCAT 59.425 41.667 14.79 0.00 33.41 3.06
47 48 5.065988 CCTCCGTTCGGAAATATTTGTCATT 59.934 40.000 14.79 0.00 33.41 2.57
48 49 6.259167 CCTCCGTTCGGAAATATTTGTCATTA 59.741 38.462 14.79 0.00 33.41 1.90
49 50 7.201661 CCTCCGTTCGGAAATATTTGTCATTAA 60.202 37.037 14.79 0.00 33.41 1.40
50 51 8.041829 TCCGTTCGGAAATATTTGTCATTAAA 57.958 30.769 11.66 0.00 0.00 1.52
51 52 8.512956 TCCGTTCGGAAATATTTGTCATTAAAA 58.487 29.630 11.66 0.00 0.00 1.52
52 53 9.296400 CCGTTCGGAAATATTTGTCATTAAAAT 57.704 29.630 5.17 0.00 0.00 1.82
78 79 9.607333 TGGATAAAAGAGGATGTATCTAGATGT 57.393 33.333 15.79 1.25 0.00 3.06
124 125 9.893305 CTCTTTTTATCCGTTTTAATGACAAGT 57.107 29.630 0.00 0.00 0.00 3.16
131 132 8.889849 ATCCGTTTTAATGACAAGTATTTTCG 57.110 30.769 0.00 0.00 0.00 3.46
132 133 7.299586 TCCGTTTTAATGACAAGTATTTTCGG 58.700 34.615 0.00 0.00 0.00 4.30
133 134 7.172875 TCCGTTTTAATGACAAGTATTTTCGGA 59.827 33.333 0.00 0.00 37.77 4.55
134 135 7.269724 CCGTTTTAATGACAAGTATTTTCGGAC 59.730 37.037 0.00 0.00 33.88 4.79
135 136 7.799447 CGTTTTAATGACAAGTATTTTCGGACA 59.201 33.333 0.00 0.00 0.00 4.02
136 137 9.113876 GTTTTAATGACAAGTATTTTCGGACAG 57.886 33.333 0.00 0.00 0.00 3.51
137 138 8.610248 TTTAATGACAAGTATTTTCGGACAGA 57.390 30.769 0.00 0.00 0.00 3.41
138 139 6.727824 AATGACAAGTATTTTCGGACAGAG 57.272 37.500 0.00 0.00 0.00 3.35
139 140 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
140 141 4.282449 TGACAAGTATTTTCGGACAGAGGA 59.718 41.667 0.00 0.00 0.00 3.71
141 142 5.221561 TGACAAGTATTTTCGGACAGAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
142 143 5.617252 ACAAGTATTTTCGGACAGAGGAAA 58.383 37.500 0.00 0.00 0.00 3.13
143 144 6.238648 ACAAGTATTTTCGGACAGAGGAAAT 58.761 36.000 0.00 0.00 32.67 2.17
144 145 7.391620 ACAAGTATTTTCGGACAGAGGAAATA 58.608 34.615 0.00 0.00 32.67 1.40
145 146 8.047310 ACAAGTATTTTCGGACAGAGGAAATAT 58.953 33.333 0.00 0.00 32.67 1.28
146 147 9.542462 CAAGTATTTTCGGACAGAGGAAATATA 57.458 33.333 0.00 0.00 32.67 0.86
151 152 8.882415 TTTTCGGACAGAGGAAATATATACAC 57.118 34.615 0.00 0.00 32.67 2.90
152 153 6.250344 TCGGACAGAGGAAATATATACACG 57.750 41.667 0.00 0.00 0.00 4.49
153 154 4.857588 CGGACAGAGGAAATATATACACGC 59.142 45.833 0.00 0.00 0.00 5.34
154 155 5.564063 CGGACAGAGGAAATATATACACGCA 60.564 44.000 0.00 0.00 0.00 5.24
155 156 6.398918 GGACAGAGGAAATATATACACGCAT 58.601 40.000 0.00 0.00 0.00 4.73
156 157 7.544622 GGACAGAGGAAATATATACACGCATA 58.455 38.462 0.00 0.00 0.00 3.14
157 158 7.488471 GGACAGAGGAAATATATACACGCATAC 59.512 40.741 0.00 0.00 0.00 2.39
158 159 7.892609 ACAGAGGAAATATATACACGCATACA 58.107 34.615 0.00 0.00 0.00 2.29
159 160 7.813148 ACAGAGGAAATATATACACGCATACAC 59.187 37.037 0.00 0.00 0.00 2.90
160 161 8.029522 CAGAGGAAATATATACACGCATACACT 58.970 37.037 0.00 0.00 0.00 3.55
161 162 8.585881 AGAGGAAATATATACACGCATACACTT 58.414 33.333 0.00 0.00 0.00 3.16
162 163 9.850628 GAGGAAATATATACACGCATACACTTA 57.149 33.333 0.00 0.00 0.00 2.24
187 188 6.668541 ATCTCTATAAACACACACATGCAC 57.331 37.500 0.00 0.00 0.00 4.57
188 189 5.546526 TCTCTATAAACACACACATGCACA 58.453 37.500 0.00 0.00 0.00 4.57
189 190 5.408299 TCTCTATAAACACACACATGCACAC 59.592 40.000 0.00 0.00 0.00 3.82
190 191 5.304778 TCTATAAACACACACATGCACACT 58.695 37.500 0.00 0.00 0.00 3.55
191 192 2.849880 AAACACACACATGCACACTC 57.150 45.000 0.00 0.00 0.00 3.51
192 193 2.042686 AACACACACATGCACACTCT 57.957 45.000 0.00 0.00 0.00 3.24
193 194 2.908688 ACACACACATGCACACTCTA 57.091 45.000 0.00 0.00 0.00 2.43
194 195 2.483876 ACACACACATGCACACTCTAC 58.516 47.619 0.00 0.00 0.00 2.59
195 196 2.158971 ACACACACATGCACACTCTACA 60.159 45.455 0.00 0.00 0.00 2.74
196 197 3.069289 CACACACATGCACACTCTACAT 58.931 45.455 0.00 0.00 0.00 2.29
197 198 3.124128 CACACACATGCACACTCTACATC 59.876 47.826 0.00 0.00 0.00 3.06
198 199 3.007290 ACACACATGCACACTCTACATCT 59.993 43.478 0.00 0.00 0.00 2.90
199 200 4.220602 ACACACATGCACACTCTACATCTA 59.779 41.667 0.00 0.00 0.00 1.98
200 201 5.105187 ACACACATGCACACTCTACATCTAT 60.105 40.000 0.00 0.00 0.00 1.98
201 202 6.096846 ACACACATGCACACTCTACATCTATA 59.903 38.462 0.00 0.00 0.00 1.31
202 203 6.980397 CACACATGCACACTCTACATCTATAA 59.020 38.462 0.00 0.00 0.00 0.98
203 204 7.168804 CACACATGCACACTCTACATCTATAAG 59.831 40.741 0.00 0.00 0.00 1.73
204 205 6.145209 CACATGCACACTCTACATCTATAAGC 59.855 42.308 0.00 0.00 0.00 3.09
205 206 5.852282 TGCACACTCTACATCTATAAGCA 57.148 39.130 0.00 0.00 0.00 3.91
206 207 5.592054 TGCACACTCTACATCTATAAGCAC 58.408 41.667 0.00 0.00 0.00 4.40
207 208 5.127031 TGCACACTCTACATCTATAAGCACA 59.873 40.000 0.00 0.00 0.00 4.57
208 209 6.183360 TGCACACTCTACATCTATAAGCACAT 60.183 38.462 0.00 0.00 0.00 3.21
209 210 6.703607 GCACACTCTACATCTATAAGCACATT 59.296 38.462 0.00 0.00 0.00 2.71
210 211 7.095857 GCACACTCTACATCTATAAGCACATTC 60.096 40.741 0.00 0.00 0.00 2.67
211 212 7.114106 CACACTCTACATCTATAAGCACATTCG 59.886 40.741 0.00 0.00 0.00 3.34
212 213 7.013369 ACACTCTACATCTATAAGCACATTCGA 59.987 37.037 0.00 0.00 0.00 3.71
213 214 7.536964 CACTCTACATCTATAAGCACATTCGAG 59.463 40.741 0.00 0.00 0.00 4.04
214 215 7.445707 ACTCTACATCTATAAGCACATTCGAGA 59.554 37.037 0.00 0.00 0.00 4.04
215 216 7.811653 TCTACATCTATAAGCACATTCGAGAG 58.188 38.462 0.00 0.00 0.00 3.20
216 217 6.641169 ACATCTATAAGCACATTCGAGAGA 57.359 37.500 0.00 0.00 39.20 3.10
217 218 6.442952 ACATCTATAAGCACATTCGAGAGAC 58.557 40.000 0.00 0.00 41.84 3.36
218 219 6.264292 ACATCTATAAGCACATTCGAGAGACT 59.736 38.462 0.00 0.00 41.84 3.24
219 220 6.066054 TCTATAAGCACATTCGAGAGACTG 57.934 41.667 0.00 0.00 45.23 3.51
220 221 4.991153 ATAAGCACATTCGAGAGACTGA 57.009 40.909 0.00 0.00 42.73 3.41
221 222 2.937469 AGCACATTCGAGAGACTGAG 57.063 50.000 0.00 0.00 42.73 3.35
222 223 1.276415 GCACATTCGAGAGACTGAGC 58.724 55.000 0.00 0.00 46.03 4.26
223 224 1.919918 CACATTCGAGAGACTGAGCC 58.080 55.000 0.00 0.00 42.73 4.70
224 225 0.453793 ACATTCGAGAGACTGAGCCG 59.546 55.000 0.00 0.00 42.73 5.52
225 226 0.735471 CATTCGAGAGACTGAGCCGA 59.265 55.000 0.00 0.00 42.73 5.54
226 227 0.736053 ATTCGAGAGACTGAGCCGAC 59.264 55.000 0.00 0.00 41.84 4.79
227 228 0.605589 TTCGAGAGACTGAGCCGACA 60.606 55.000 0.00 0.00 41.84 4.35
228 229 0.393132 TCGAGAGACTGAGCCGACAT 60.393 55.000 0.00 0.00 33.31 3.06
229 230 1.134491 TCGAGAGACTGAGCCGACATA 60.134 52.381 0.00 0.00 33.31 2.29
230 231 1.876799 CGAGAGACTGAGCCGACATAT 59.123 52.381 0.00 0.00 0.00 1.78
231 232 2.095969 CGAGAGACTGAGCCGACATATC 60.096 54.545 0.00 0.00 0.00 1.63
232 233 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
233 234 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
234 235 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
235 236 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
236 237 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
237 238 4.343526 AGACTGAGCCGACATATCATCTTT 59.656 41.667 0.00 0.00 0.00 2.52
238 239 5.536538 AGACTGAGCCGACATATCATCTTTA 59.463 40.000 0.00 0.00 0.00 1.85
239 240 5.777802 ACTGAGCCGACATATCATCTTTAG 58.222 41.667 0.00 0.00 0.00 1.85
240 241 5.536538 ACTGAGCCGACATATCATCTTTAGA 59.463 40.000 0.00 0.00 0.00 2.10
241 242 6.210385 ACTGAGCCGACATATCATCTTTAGAT 59.790 38.462 0.00 0.00 34.56 1.98
242 243 6.997655 TGAGCCGACATATCATCTTTAGATT 58.002 36.000 0.00 0.00 31.21 2.40
243 244 6.870439 TGAGCCGACATATCATCTTTAGATTG 59.130 38.462 0.00 0.00 31.21 2.67
244 245 6.997655 AGCCGACATATCATCTTTAGATTGA 58.002 36.000 0.00 0.00 31.21 2.57
245 246 7.445121 AGCCGACATATCATCTTTAGATTGAA 58.555 34.615 0.00 0.00 31.21 2.69
246 247 7.601886 AGCCGACATATCATCTTTAGATTGAAG 59.398 37.037 0.00 0.00 31.21 3.02
247 248 7.600375 GCCGACATATCATCTTTAGATTGAAGA 59.400 37.037 0.00 0.00 37.52 2.87
248 249 9.481340 CCGACATATCATCTTTAGATTGAAGAA 57.519 33.333 0.00 0.00 36.77 2.52
258 259 8.728337 TCTTTAGATTGAAGAAGTCATCATGG 57.272 34.615 0.00 0.00 35.70 3.66
259 260 7.772292 TCTTTAGATTGAAGAAGTCATCATGGG 59.228 37.037 0.00 0.00 35.70 4.00
260 261 5.705397 AGATTGAAGAAGTCATCATGGGA 57.295 39.130 0.00 0.00 35.70 4.37
261 262 6.070951 AGATTGAAGAAGTCATCATGGGAA 57.929 37.500 0.00 0.00 35.70 3.97
262 263 5.884792 AGATTGAAGAAGTCATCATGGGAAC 59.115 40.000 0.00 0.00 35.70 3.62
263 264 4.984295 TTGAAGAAGTCATCATGGGAACA 58.016 39.130 0.00 0.00 40.00 3.18
264 265 5.573219 TTGAAGAAGTCATCATGGGAACAT 58.427 37.500 0.00 0.00 44.38 2.71
265 266 5.649395 TTGAAGAAGTCATCATGGGAACATC 59.351 40.000 0.00 0.00 42.60 3.06
266 267 6.522977 TTGAAGAAGTCATCATGGGAACATCT 60.523 38.462 0.00 0.00 42.60 2.90
267 268 8.279451 TTGAAGAAGTCATCATGGGAACATCTC 61.279 40.741 0.00 0.00 42.60 2.75
275 276 2.630889 TGGGAACATCTCCTCTCACT 57.369 50.000 0.00 0.00 44.68 3.41
276 277 2.182827 TGGGAACATCTCCTCTCACTG 58.817 52.381 0.00 0.00 44.68 3.66
277 278 2.225369 TGGGAACATCTCCTCTCACTGA 60.225 50.000 0.00 0.00 44.68 3.41
278 279 2.834549 GGGAACATCTCCTCTCACTGAA 59.165 50.000 0.00 0.00 44.68 3.02
279 280 3.368948 GGGAACATCTCCTCTCACTGAAC 60.369 52.174 0.00 0.00 44.68 3.18
280 281 3.506810 GAACATCTCCTCTCACTGAACG 58.493 50.000 0.00 0.00 0.00 3.95
281 282 1.203523 ACATCTCCTCTCACTGAACGC 59.796 52.381 0.00 0.00 0.00 4.84
282 283 0.453793 ATCTCCTCTCACTGAACGCG 59.546 55.000 3.53 3.53 0.00 6.01
283 284 0.889638 TCTCCTCTCACTGAACGCGT 60.890 55.000 5.58 5.58 0.00 6.01
284 285 0.803117 CTCCTCTCACTGAACGCGTA 59.197 55.000 14.46 0.00 0.00 4.42
285 286 0.520404 TCCTCTCACTGAACGCGTAC 59.480 55.000 14.46 0.00 0.00 3.67
286 287 0.456312 CCTCTCACTGAACGCGTACC 60.456 60.000 14.46 8.58 0.00 3.34
287 288 0.793478 CTCTCACTGAACGCGTACCG 60.793 60.000 14.46 6.07 44.21 4.02
299 300 3.869866 CGTACCGCCGAAAATTCTG 57.130 52.632 0.00 0.00 0.00 3.02
300 301 1.352114 CGTACCGCCGAAAATTCTGA 58.648 50.000 0.00 0.00 0.00 3.27
301 302 1.727880 CGTACCGCCGAAAATTCTGAA 59.272 47.619 0.00 0.00 0.00 3.02
302 303 2.158058 CGTACCGCCGAAAATTCTGAAA 59.842 45.455 0.00 0.00 0.00 2.69
303 304 3.181514 CGTACCGCCGAAAATTCTGAAAT 60.182 43.478 0.00 0.00 0.00 2.17
304 305 4.033129 CGTACCGCCGAAAATTCTGAAATA 59.967 41.667 0.00 0.00 0.00 1.40
305 306 5.446206 CGTACCGCCGAAAATTCTGAAATAA 60.446 40.000 0.00 0.00 0.00 1.40
306 307 5.379732 ACCGCCGAAAATTCTGAAATAAA 57.620 34.783 0.00 0.00 0.00 1.40
307 308 5.961272 ACCGCCGAAAATTCTGAAATAAAT 58.039 33.333 0.00 0.00 0.00 1.40
308 309 6.033966 ACCGCCGAAAATTCTGAAATAAATC 58.966 36.000 0.00 0.00 0.00 2.17
309 310 5.458779 CCGCCGAAAATTCTGAAATAAATCC 59.541 40.000 0.00 0.00 0.00 3.01
310 311 6.033341 CGCCGAAAATTCTGAAATAAATCCA 58.967 36.000 0.00 0.00 0.00 3.41
311 312 6.020678 CGCCGAAAATTCTGAAATAAATCCAC 60.021 38.462 0.00 0.00 0.00 4.02
312 313 6.811170 GCCGAAAATTCTGAAATAAATCCACA 59.189 34.615 0.00 0.00 0.00 4.17
313 314 7.009540 GCCGAAAATTCTGAAATAAATCCACAG 59.990 37.037 0.00 0.00 0.00 3.66
314 315 7.009540 CCGAAAATTCTGAAATAAATCCACAGC 59.990 37.037 0.00 0.00 0.00 4.40
315 316 7.541783 CGAAAATTCTGAAATAAATCCACAGCA 59.458 33.333 0.00 0.00 0.00 4.41
316 317 9.206870 GAAAATTCTGAAATAAATCCACAGCAA 57.793 29.630 0.00 0.00 0.00 3.91
317 318 9.729281 AAAATTCTGAAATAAATCCACAGCAAT 57.271 25.926 0.00 0.00 0.00 3.56
318 319 8.712285 AATTCTGAAATAAATCCACAGCAATG 57.288 30.769 0.00 0.00 0.00 2.82
319 320 5.653507 TCTGAAATAAATCCACAGCAATGC 58.346 37.500 0.00 0.00 0.00 3.56
320 321 4.422840 TGAAATAAATCCACAGCAATGCG 58.577 39.130 0.00 0.00 0.00 4.73
321 322 4.157472 TGAAATAAATCCACAGCAATGCGA 59.843 37.500 0.00 0.00 0.00 5.10
322 323 3.976793 ATAAATCCACAGCAATGCGAG 57.023 42.857 0.00 0.00 0.00 5.03
323 324 1.538047 AAATCCACAGCAATGCGAGT 58.462 45.000 0.00 0.00 0.00 4.18
324 325 2.401583 AATCCACAGCAATGCGAGTA 57.598 45.000 0.00 0.00 0.00 2.59
325 326 2.627515 ATCCACAGCAATGCGAGTAT 57.372 45.000 0.00 0.00 0.00 2.12
326 327 1.939974 TCCACAGCAATGCGAGTATC 58.060 50.000 0.00 0.00 0.00 2.24
327 328 1.206849 TCCACAGCAATGCGAGTATCA 59.793 47.619 0.00 0.00 33.17 2.15
328 329 2.009051 CCACAGCAATGCGAGTATCAA 58.991 47.619 0.00 0.00 33.17 2.57
329 330 2.031314 CCACAGCAATGCGAGTATCAAG 59.969 50.000 0.00 0.00 33.17 3.02
330 331 2.931969 CACAGCAATGCGAGTATCAAGA 59.068 45.455 0.00 0.00 33.17 3.02
331 332 2.932614 ACAGCAATGCGAGTATCAAGAC 59.067 45.455 0.00 0.00 33.17 3.01
332 333 3.193263 CAGCAATGCGAGTATCAAGACT 58.807 45.455 0.00 0.00 33.17 3.24
333 334 3.620374 CAGCAATGCGAGTATCAAGACTT 59.380 43.478 0.00 0.00 33.17 3.01
334 335 4.805719 CAGCAATGCGAGTATCAAGACTTA 59.194 41.667 0.00 0.00 33.17 2.24
335 336 5.291858 CAGCAATGCGAGTATCAAGACTTAA 59.708 40.000 0.00 0.00 33.17 1.85
336 337 6.018425 CAGCAATGCGAGTATCAAGACTTAAT 60.018 38.462 0.00 0.00 33.17 1.40
337 338 6.201806 AGCAATGCGAGTATCAAGACTTAATC 59.798 38.462 0.00 0.00 33.17 1.75
338 339 6.564873 GCAATGCGAGTATCAAGACTTAATCC 60.565 42.308 0.00 0.00 33.17 3.01
339 340 5.854010 TGCGAGTATCAAGACTTAATCCT 57.146 39.130 0.00 0.00 33.17 3.24
340 341 5.592054 TGCGAGTATCAAGACTTAATCCTG 58.408 41.667 0.00 0.00 33.17 3.86
341 342 5.359860 TGCGAGTATCAAGACTTAATCCTGA 59.640 40.000 0.00 0.00 32.20 3.86
342 343 6.040955 TGCGAGTATCAAGACTTAATCCTGAT 59.959 38.462 0.00 0.00 40.83 2.90
343 344 7.230712 TGCGAGTATCAAGACTTAATCCTGATA 59.769 37.037 0.00 0.00 39.00 2.15
344 345 8.082852 GCGAGTATCAAGACTTAATCCTGATAA 58.917 37.037 0.00 0.00 40.76 1.75
345 346 9.619316 CGAGTATCAAGACTTAATCCTGATAAG 57.381 37.037 0.00 0.00 40.76 1.73
348 349 9.482627 GTATCAAGACTTAATCCTGATAAGTGG 57.517 37.037 3.85 0.00 40.76 4.00
349 350 6.889198 TCAAGACTTAATCCTGATAAGTGGG 58.111 40.000 3.85 0.00 34.55 4.61
350 351 6.443849 TCAAGACTTAATCCTGATAAGTGGGT 59.556 38.462 3.85 0.00 34.55 4.51
351 352 6.240549 AGACTTAATCCTGATAAGTGGGTG 57.759 41.667 3.85 0.00 34.55 4.61
352 353 5.726793 AGACTTAATCCTGATAAGTGGGTGT 59.273 40.000 3.85 0.00 34.55 4.16
353 354 6.901300 AGACTTAATCCTGATAAGTGGGTGTA 59.099 38.462 3.85 0.00 34.55 2.90
397 398 6.020678 CGCCGAAAATTCTGAAATAAATCCAC 60.021 38.462 0.00 0.00 0.00 4.02
398 399 6.811170 GCCGAAAATTCTGAAATAAATCCACA 59.189 34.615 0.00 0.00 0.00 4.17
400 401 8.647226 CCGAAAATTCTGAAATAAATCCACAAC 58.353 33.333 0.00 0.00 0.00 3.32
405 406 7.887996 TTCTGAAATAAATCCACAACAATGC 57.112 32.000 0.00 0.00 0.00 3.56
409 410 5.643379 AATAAATCCACAACAATGCGAGT 57.357 34.783 0.00 0.00 0.00 4.18
414 415 3.669536 TCCACAACAATGCGAGTATCAA 58.330 40.909 0.00 0.00 33.17 2.57
426 427 5.592054 TGCGAGTATCAAGACTTAATCCTG 58.408 41.667 0.00 0.00 33.17 3.86
430 431 7.652727 CGAGTATCAAGACTTAATCCTGATGA 58.347 38.462 8.23 0.00 38.67 2.92
432 433 8.546083 AGTATCAAGACTTAATCCTGATGAGT 57.454 34.615 8.23 0.00 38.67 3.41
433 434 8.420222 AGTATCAAGACTTAATCCTGATGAGTG 58.580 37.037 8.23 0.00 38.67 3.51
434 435 5.982356 TCAAGACTTAATCCTGATGAGTGG 58.018 41.667 0.00 0.00 0.00 4.00
436 437 4.366267 AGACTTAATCCTGATGAGTGGGT 58.634 43.478 2.31 0.00 0.00 4.51
443 455 1.759445 CCTGATGAGTGGGTGTCCTAG 59.241 57.143 0.00 0.00 0.00 3.02
469 488 7.148523 GCCATCAAAACTTTCCATTTCTTGATC 60.149 37.037 0.00 0.00 0.00 2.92
472 491 8.160521 TCAAAACTTTCCATTTCTTGATCGTA 57.839 30.769 0.00 0.00 0.00 3.43
495 515 7.905493 CGTACTGAGATAAGCTTTCCATTTTTC 59.095 37.037 3.20 0.00 0.00 2.29
534 554 3.394719 AGAGAAGACTTTCCGAACTTGC 58.605 45.455 0.00 0.00 33.64 4.01
538 558 1.940613 AGACTTTCCGAACTTGCACAC 59.059 47.619 0.00 0.00 0.00 3.82
558 578 1.600957 CTGCCGATCACATCCACAATC 59.399 52.381 0.00 0.00 0.00 2.67
586 643 1.007038 ACGCATGCACAAGCCTTTG 60.007 52.632 19.57 0.00 41.13 2.77
613 670 6.678547 TGCAATGTTTATCCCTACCCTAATT 58.321 36.000 0.00 0.00 0.00 1.40
614 671 7.817440 TGCAATGTTTATCCCTACCCTAATTA 58.183 34.615 0.00 0.00 0.00 1.40
615 672 7.722285 TGCAATGTTTATCCCTACCCTAATTAC 59.278 37.037 0.00 0.00 0.00 1.89
616 673 7.722285 GCAATGTTTATCCCTACCCTAATTACA 59.278 37.037 0.00 0.00 0.00 2.41
617 674 9.807921 CAATGTTTATCCCTACCCTAATTACAT 57.192 33.333 0.00 0.00 0.00 2.29
644 701 5.977129 GCAATTAACCACTCCCATTTAATCG 59.023 40.000 0.00 0.00 0.00 3.34
645 702 5.767816 ATTAACCACTCCCATTTAATCGC 57.232 39.130 0.00 0.00 0.00 4.58
654 711 4.584874 TCCCATTTAATCGCTTCAACTCA 58.415 39.130 0.00 0.00 0.00 3.41
701 758 3.458163 GATCCGACGGCCCACAGA 61.458 66.667 9.66 0.00 0.00 3.41
707 764 4.988598 ACGGCCCACAGAAGCGTG 62.989 66.667 0.00 0.00 36.61 5.34
731 788 1.287191 CGAGCATCCATCGATCCGT 59.713 57.895 0.00 0.00 42.76 4.69
737 794 1.524863 ATCCATCGATCCGTCCGTCC 61.525 60.000 0.00 0.00 0.00 4.79
738 795 2.051256 CATCGATCCGTCCGTCCG 60.051 66.667 0.00 0.00 0.00 4.79
739 796 2.515523 ATCGATCCGTCCGTCCGT 60.516 61.111 0.00 0.00 0.00 4.69
740 797 2.541120 ATCGATCCGTCCGTCCGTC 61.541 63.158 0.00 0.00 0.00 4.79
741 798 4.586472 CGATCCGTCCGTCCGTCG 62.586 72.222 0.00 0.00 39.52 5.12
799 859 0.739813 ACGATCGCCTTCCTTTTCCG 60.740 55.000 16.60 0.00 0.00 4.30
806 866 0.038310 CCTTCCTTTTCCGCCTTCCT 59.962 55.000 0.00 0.00 0.00 3.36
807 867 1.454201 CTTCCTTTTCCGCCTTCCTC 58.546 55.000 0.00 0.00 0.00 3.71
808 868 0.768622 TTCCTTTTCCGCCTTCCTCA 59.231 50.000 0.00 0.00 0.00 3.86
836 896 2.203998 AGTCTGACCACCAGGGGG 60.204 66.667 6.02 6.02 43.12 5.40
876 936 2.642700 CGCCCACGGAAACCTTTG 59.357 61.111 0.00 0.00 34.97 2.77
882 942 1.076632 ACGGAAACCTTTGGTGCCA 60.077 52.632 8.80 0.00 35.34 4.92
883 943 0.469144 ACGGAAACCTTTGGTGCCAT 60.469 50.000 8.80 0.00 35.34 4.40
884 944 0.038343 CGGAAACCTTTGGTGCCATG 60.038 55.000 8.80 0.00 35.34 3.66
885 945 1.337118 GGAAACCTTTGGTGCCATGA 58.663 50.000 0.00 0.00 35.34 3.07
886 946 1.901833 GGAAACCTTTGGTGCCATGAT 59.098 47.619 0.00 0.00 35.34 2.45
887 947 2.354003 GGAAACCTTTGGTGCCATGATG 60.354 50.000 0.00 0.00 35.34 3.07
908 968 1.511850 TGCATATCCCGCAATTCTCG 58.488 50.000 0.00 0.00 36.17 4.04
914 974 2.705826 CCGCAATTCTCGCTCTGC 59.294 61.111 0.00 0.00 0.00 4.26
994 1066 3.961849 TGCACATATAAGCAGGACCAAA 58.038 40.909 0.00 0.00 35.51 3.28
995 1067 3.694072 TGCACATATAAGCAGGACCAAAC 59.306 43.478 0.00 0.00 35.51 2.93
996 1068 3.066760 GCACATATAAGCAGGACCAAACC 59.933 47.826 0.00 0.00 0.00 3.27
997 1069 4.269183 CACATATAAGCAGGACCAAACCA 58.731 43.478 0.00 0.00 0.00 3.67
998 1070 4.704540 CACATATAAGCAGGACCAAACCAA 59.295 41.667 0.00 0.00 0.00 3.67
1040 1112 3.064416 TGGCGATACCACACTGCA 58.936 55.556 0.00 0.00 46.36 4.41
1041 1113 1.601703 TGGCGATACCACACTGCAT 59.398 52.632 0.00 0.00 46.36 3.96
1042 1114 0.744057 TGGCGATACCACACTGCATG 60.744 55.000 0.00 0.00 46.36 4.06
1076 1148 2.287788 CCTGCTTGGTTCATGTGTTGTC 60.288 50.000 0.00 0.00 0.00 3.18
1082 1154 1.609208 GTTCATGTGTTGTCAGGCCT 58.391 50.000 0.00 0.00 0.00 5.19
1083 1155 2.552155 GGTTCATGTGTTGTCAGGCCTA 60.552 50.000 3.98 0.00 0.00 3.93
1099 1171 1.596477 CTAGGCTTCATGGGCGAGC 60.596 63.158 0.00 0.00 36.85 5.03
1120 1192 3.814268 GTGTAGGCGGACGGCGTA 61.814 66.667 14.74 7.88 44.92 4.42
1124 1196 3.390183 TAGGCGGACGGCGTAGAGA 62.390 63.158 14.74 0.00 44.92 3.10
1135 1207 1.544691 GGCGTAGAGAAGGTGAAGACA 59.455 52.381 0.00 0.00 0.00 3.41
1136 1208 2.597520 GCGTAGAGAAGGTGAAGACAC 58.402 52.381 0.00 0.00 45.27 3.67
1169 1241 1.586564 CGTTCTCCGAGTCGATGGC 60.587 63.158 15.64 0.00 39.56 4.40
1244 1316 2.502080 CCTGACAGACGACGACGC 60.502 66.667 7.30 0.27 43.96 5.19
1245 1317 2.865603 CTGACAGACGACGACGCG 60.866 66.667 3.53 3.53 43.96 6.01
1284 1362 3.896133 GATCCTACGCCGTCGCCA 61.896 66.667 0.00 0.00 39.84 5.69
1285 1363 3.208884 GATCCTACGCCGTCGCCAT 62.209 63.158 0.00 0.00 39.84 4.40
1286 1364 3.208884 ATCCTACGCCGTCGCCATC 62.209 63.158 0.00 0.00 39.84 3.51
1342 1420 2.494530 GGGCCTCTCTACGAGCTGG 61.495 68.421 0.84 0.00 38.49 4.85
1396 1475 0.739813 GGATCGACGTCCAAACCCAG 60.740 60.000 10.58 0.00 38.20 4.45
1397 1476 1.359459 GATCGACGTCCAAACCCAGC 61.359 60.000 10.58 0.00 0.00 4.85
1398 1477 2.107041 ATCGACGTCCAAACCCAGCA 62.107 55.000 10.58 0.00 0.00 4.41
1399 1478 1.671054 CGACGTCCAAACCCAGCAT 60.671 57.895 10.58 0.00 0.00 3.79
1402 1481 2.365582 GACGTCCAAACCCAGCATATT 58.634 47.619 3.51 0.00 0.00 1.28
1404 1483 1.676006 CGTCCAAACCCAGCATATTCC 59.324 52.381 0.00 0.00 0.00 3.01
1406 1485 3.365472 GTCCAAACCCAGCATATTCCTT 58.635 45.455 0.00 0.00 0.00 3.36
1407 1486 3.381590 GTCCAAACCCAGCATATTCCTTC 59.618 47.826 0.00 0.00 0.00 3.46
1410 1489 4.272489 CAAACCCAGCATATTCCTTCTCA 58.728 43.478 0.00 0.00 0.00 3.27
1411 1490 3.853355 ACCCAGCATATTCCTTCTCAG 57.147 47.619 0.00 0.00 0.00 3.35
1412 1491 3.118531 ACCCAGCATATTCCTTCTCAGT 58.881 45.455 0.00 0.00 0.00 3.41
1413 1492 3.118112 ACCCAGCATATTCCTTCTCAGTG 60.118 47.826 0.00 0.00 0.00 3.66
1414 1493 3.135348 CCCAGCATATTCCTTCTCAGTGA 59.865 47.826 0.00 0.00 0.00 3.41
1415 1494 4.378774 CCAGCATATTCCTTCTCAGTGAG 58.621 47.826 14.36 14.36 0.00 3.51
1417 1496 2.799412 GCATATTCCTTCTCAGTGAGCG 59.201 50.000 15.72 8.58 0.00 5.03
1432 1513 5.239306 TCAGTGAGCGAAAATCAAAACTGAT 59.761 36.000 0.00 0.00 28.18 2.90
1433 1514 5.341462 CAGTGAGCGAAAATCAAAACTGATG 59.659 40.000 0.00 0.00 0.00 3.07
1435 1516 5.340667 GTGAGCGAAAATCAAAACTGATGAC 59.659 40.000 0.00 0.00 0.00 3.06
1437 1518 5.830912 AGCGAAAATCAAAACTGATGACAA 58.169 33.333 0.00 0.00 0.00 3.18
1439 1520 6.198966 AGCGAAAATCAAAACTGATGACAAAC 59.801 34.615 0.00 0.00 0.00 2.93
1440 1521 6.198966 GCGAAAATCAAAACTGATGACAAACT 59.801 34.615 0.00 0.00 0.00 2.66
1441 1522 7.549649 CGAAAATCAAAACTGATGACAAACTG 58.450 34.615 0.00 0.00 0.00 3.16
1444 1525 5.155509 TCAAAACTGATGACAAACTGACG 57.844 39.130 0.00 0.00 0.00 4.35
1449 1530 3.675225 ACTGATGACAAACTGACGATTCG 59.325 43.478 4.14 4.14 0.00 3.34
1511 1592 2.093764 GTCCCAGTCCTTCACATCTCTG 60.094 54.545 0.00 0.00 0.00 3.35
1561 1642 1.779061 AAGAAGACCACCGCCCACAT 61.779 55.000 0.00 0.00 0.00 3.21
1592 1673 3.324099 GAGCCGCTCGTCGACTTCA 62.324 63.158 14.70 0.00 41.67 3.02
1593 1674 3.173240 GCCGCTCGTCGACTTCAC 61.173 66.667 14.70 0.00 41.67 3.18
1594 1675 2.504244 CCGCTCGTCGACTTCACC 60.504 66.667 14.70 0.00 41.67 4.02
1639 1720 3.769844 AGCAAGACGATAGGGAAGAAGAA 59.230 43.478 0.00 0.00 43.77 2.52
1640 1721 4.116238 GCAAGACGATAGGGAAGAAGAAG 58.884 47.826 0.00 0.00 43.77 2.85
1641 1722 4.142138 GCAAGACGATAGGGAAGAAGAAGA 60.142 45.833 0.00 0.00 43.77 2.87
1642 1723 5.624738 GCAAGACGATAGGGAAGAAGAAGAA 60.625 44.000 0.00 0.00 43.77 2.52
1643 1724 5.845391 AGACGATAGGGAAGAAGAAGAAG 57.155 43.478 0.00 0.00 43.77 2.85
1644 1725 4.647399 AGACGATAGGGAAGAAGAAGAAGG 59.353 45.833 0.00 0.00 43.77 3.46
1689 1770 2.348620 TGCCGTCAAGAGCAGCAT 59.651 55.556 0.00 0.00 33.08 3.79
1691 1772 2.758089 GCCGTCAAGAGCAGCATGG 61.758 63.158 0.00 0.00 35.86 3.66
1693 1774 1.088340 CCGTCAAGAGCAGCATGGAG 61.088 60.000 0.00 0.00 35.86 3.86
1694 1775 1.703438 CGTCAAGAGCAGCATGGAGC 61.703 60.000 0.00 0.00 46.19 4.70
1705 1786 1.305549 CATGGAGCAGGGGCCTTTT 60.306 57.895 0.84 0.00 42.56 2.27
1731 1812 0.887387 GAAGCGGTAAACCACCTGCA 60.887 55.000 0.00 0.00 46.19 4.41
1735 1816 1.003851 CGGTAAACCACCTGCATACG 58.996 55.000 0.00 0.00 46.19 3.06
1789 1874 3.091545 AGCTAGCTAAAGGCAATGCAAA 58.908 40.909 17.69 0.00 44.79 3.68
1814 1899 5.404466 TTTGCAAAATGGGGTGAGATAAG 57.596 39.130 10.02 0.00 0.00 1.73
1815 1900 4.314522 TGCAAAATGGGGTGAGATAAGA 57.685 40.909 0.00 0.00 0.00 2.10
1822 1922 6.590656 AATGGGGTGAGATAAGATTTACCA 57.409 37.500 0.00 0.00 0.00 3.25
1826 1926 5.602978 GGGGTGAGATAAGATTTACCAGAGA 59.397 44.000 0.00 0.00 0.00 3.10
1835 1935 9.877178 GATAAGATTTACCAGAGACAGAAAGAA 57.123 33.333 0.00 0.00 0.00 2.52
1856 1961 1.064825 ACCCCTTCCATGTCTTCGTT 58.935 50.000 0.00 0.00 0.00 3.85
1862 1967 1.234821 TCCATGTCTTCGTTTGCCAC 58.765 50.000 0.00 0.00 0.00 5.01
1870 1975 3.860536 GTCTTCGTTTGCCACTAGAGATC 59.139 47.826 0.00 0.00 0.00 2.75
1879 1984 2.167281 GCCACTAGAGATCTCTGCAACA 59.833 50.000 31.46 13.05 40.71 3.33
1880 1985 3.368843 GCCACTAGAGATCTCTGCAACAA 60.369 47.826 31.46 12.35 40.71 2.83
1881 1986 4.180057 CCACTAGAGATCTCTGCAACAAC 58.820 47.826 31.46 0.00 40.71 3.32
1882 1987 4.081752 CCACTAGAGATCTCTGCAACAACT 60.082 45.833 31.46 7.92 40.71 3.16
1884 1989 4.769488 ACTAGAGATCTCTGCAACAACTGA 59.231 41.667 31.46 9.56 40.71 3.41
1885 1990 4.613925 AGAGATCTCTGCAACAACTGAA 57.386 40.909 24.56 0.00 38.75 3.02
1886 1991 4.567971 AGAGATCTCTGCAACAACTGAAG 58.432 43.478 24.56 0.00 38.75 3.02
1887 1992 3.072944 AGATCTCTGCAACAACTGAAGC 58.927 45.455 0.00 0.00 29.35 3.86
1888 1993 2.627515 TCTCTGCAACAACTGAAGCT 57.372 45.000 0.00 0.00 29.35 3.74
1889 1994 2.487934 TCTCTGCAACAACTGAAGCTC 58.512 47.619 0.00 0.00 29.35 4.09
1890 1995 1.534595 CTCTGCAACAACTGAAGCTCC 59.465 52.381 0.00 0.00 29.35 4.70
1930 2035 5.694231 TCTGTTTTCATCTGTGACCAATG 57.306 39.130 0.00 0.00 33.11 2.82
1934 2039 7.448161 TCTGTTTTCATCTGTGACCAATGTTAT 59.552 33.333 0.00 0.00 33.11 1.89
1935 2040 8.628630 TGTTTTCATCTGTGACCAATGTTATA 57.371 30.769 0.00 0.00 33.11 0.98
1936 2041 9.072375 TGTTTTCATCTGTGACCAATGTTATAA 57.928 29.630 0.00 0.00 33.11 0.98
1939 2044 9.906660 TTTCATCTGTGACCAATGTTATAAAAC 57.093 29.630 0.00 0.00 33.11 2.43
1940 2045 8.862325 TCATCTGTGACCAATGTTATAAAACT 57.138 30.769 0.00 0.00 36.51 2.66
1941 2046 8.729756 TCATCTGTGACCAATGTTATAAAACTG 58.270 33.333 0.00 0.00 36.51 3.16
1946 2055 9.290988 TGTGACCAATGTTATAAAACTGTATGT 57.709 29.630 0.00 0.00 36.51 2.29
1960 2069 7.606858 AAACTGTATGTTCTGTCTGATGATG 57.393 36.000 0.00 0.00 38.03 3.07
1963 2072 3.639672 ATGTTCTGTCTGATGATGCCA 57.360 42.857 0.00 0.00 0.00 4.92
1966 2075 3.008266 TGTTCTGTCTGATGATGCCAAGA 59.992 43.478 0.00 0.00 0.00 3.02
1973 2082 5.100259 GTCTGATGATGCCAAGAACAATTG 58.900 41.667 3.24 3.24 0.00 2.32
1984 2093 6.271488 CCAAGAACAATTGGCTAAGATTGA 57.729 37.500 10.83 0.00 43.12 2.57
1999 2108 7.141363 GCTAAGATTGAACTGACAACACAAAT 58.859 34.615 0.00 0.00 32.50 2.32
2008 2117 8.420222 TGAACTGACAACACAAATCCATTATTT 58.580 29.630 0.00 0.00 38.36 1.40
2009 2118 9.906660 GAACTGACAACACAAATCCATTATTTA 57.093 29.630 0.00 0.00 35.54 1.40
2040 2149 9.952030 TGTATAATAAACAGAGGTTGATGTGAA 57.048 29.630 0.00 0.00 37.30 3.18
2069 2178 6.566141 CACAATGCATATTCAGACATTTGGA 58.434 36.000 0.00 0.00 30.54 3.53
2071 2180 7.169140 CACAATGCATATTCAGACATTTGGATG 59.831 37.037 0.00 0.00 39.25 3.51
2073 2182 4.038282 TGCATATTCAGACATTTGGATGGC 59.962 41.667 0.00 0.00 41.94 4.40
2085 2194 4.502105 TTTGGATGGCTAGCAATGTCTA 57.498 40.909 18.24 3.59 0.00 2.59
2095 2204 6.828273 TGGCTAGCAATGTCTAAATACACAAT 59.172 34.615 18.24 0.00 30.75 2.71
2127 2236 7.293745 CACTTTCAGTTAGCAGTAATCAACAG 58.706 38.462 0.00 0.00 0.00 3.16
2139 2248 7.278868 AGCAGTAATCAACAGAGCTTAATGTAC 59.721 37.037 0.00 0.00 31.50 2.90
2148 2257 3.772025 AGAGCTTAATGTACTCCAGCACT 59.228 43.478 8.84 5.71 32.58 4.40
2149 2258 3.866651 AGCTTAATGTACTCCAGCACTG 58.133 45.455 8.84 0.00 32.58 3.66
2214 2323 5.231991 CAGTACAACTTGTGGTGCAATTTTC 59.768 40.000 4.57 0.00 36.36 2.29
2215 2324 4.199432 ACAACTTGTGGTGCAATTTTCA 57.801 36.364 0.00 0.00 36.36 2.69
2239 2348 7.121168 TCAAATTTGTATCACCAATCCTCTCAC 59.879 37.037 17.47 0.00 0.00 3.51
2240 2349 5.497464 TTTGTATCACCAATCCTCTCACA 57.503 39.130 0.00 0.00 0.00 3.58
2241 2350 5.698741 TTGTATCACCAATCCTCTCACAT 57.301 39.130 0.00 0.00 0.00 3.21
2250 2359 5.188434 CCAATCCTCTCACATACAACACAT 58.812 41.667 0.00 0.00 0.00 3.21
2253 2362 7.011763 CCAATCCTCTCACATACAACACATAAG 59.988 40.741 0.00 0.00 0.00 1.73
2277 2386 5.645067 GCCATGCACTTCTGAGCAATATATA 59.355 40.000 0.00 0.00 42.55 0.86
2278 2387 6.318144 GCCATGCACTTCTGAGCAATATATAT 59.682 38.462 0.00 0.00 42.55 0.86
2302 2418 7.870509 TCCATAGAGATCAGTGGAAAATTTG 57.129 36.000 0.00 0.00 37.78 2.32
2329 2445 0.892755 CCAACCCAGCTACTGACGTA 59.107 55.000 0.00 0.00 32.44 3.57
2330 2446 1.135083 CCAACCCAGCTACTGACGTAG 60.135 57.143 0.00 0.00 44.77 3.51
2346 2462 4.175787 ACGTAGTTGAAGATGAGTCCAC 57.824 45.455 0.00 0.00 37.78 4.02
2347 2463 3.572682 ACGTAGTTGAAGATGAGTCCACA 59.427 43.478 0.00 0.00 37.78 4.17
2348 2464 4.220821 ACGTAGTTGAAGATGAGTCCACAT 59.779 41.667 0.00 0.00 37.78 3.21
2349 2465 5.171476 CGTAGTTGAAGATGAGTCCACATT 58.829 41.667 0.00 0.00 0.00 2.71
2350 2466 5.639506 CGTAGTTGAAGATGAGTCCACATTT 59.360 40.000 0.00 0.00 0.00 2.32
2351 2467 5.954296 AGTTGAAGATGAGTCCACATTTG 57.046 39.130 0.00 0.00 0.00 2.32
2398 2519 1.136110 ACCGCCAAAACAACTTTGAGG 59.864 47.619 0.00 4.92 46.35 3.86
2400 2521 1.581934 GCCAAAACAACTTTGAGGGC 58.418 50.000 0.00 0.00 46.35 5.19
2420 2541 1.134551 CGGGGCCATAAAAATGGTTGG 60.135 52.381 4.39 0.00 43.53 3.77
2441 2562 7.095187 GGTTGGAGTGTTGTACAAGAAGAATAG 60.095 40.741 8.98 0.00 0.00 1.73
2442 2563 5.932303 TGGAGTGTTGTACAAGAAGAATAGC 59.068 40.000 8.98 0.00 0.00 2.97
2443 2564 6.166982 GGAGTGTTGTACAAGAAGAATAGCT 58.833 40.000 8.98 0.00 0.00 3.32
2444 2565 7.039293 TGGAGTGTTGTACAAGAAGAATAGCTA 60.039 37.037 8.98 0.00 0.00 3.32
2445 2566 7.982354 GGAGTGTTGTACAAGAAGAATAGCTAT 59.018 37.037 8.98 0.00 0.00 2.97
2465 2586 2.113860 AGCTATTTTCTTCAGCGCCA 57.886 45.000 2.29 0.00 40.29 5.69
2473 2594 2.192664 TCTTCAGCGCCACCAATAAA 57.807 45.000 2.29 0.00 0.00 1.40
2474 2595 2.509569 TCTTCAGCGCCACCAATAAAA 58.490 42.857 2.29 0.00 0.00 1.52
2582 2703 5.412904 CCCAGAGTTTCCAAGTATCTTGAAC 59.587 44.000 10.54 8.06 0.00 3.18
2597 2718 0.035439 TGAACCCTTCCGCTTCCATC 60.035 55.000 0.00 0.00 0.00 3.51
2621 2742 2.697751 AGCTCGCCTCTCTGATTTGTAT 59.302 45.455 0.00 0.00 0.00 2.29
2652 2773 4.450419 CGGTCTTGCCAATATCAGAGATTC 59.550 45.833 0.00 0.00 36.97 2.52
2715 2843 3.643199 TGGTACATAGAATTGGCTGCA 57.357 42.857 0.50 0.00 0.00 4.41
2729 2857 4.888326 TGGCTGCAAAATGGAGTAATTT 57.112 36.364 0.50 0.00 38.17 1.82
2765 2893 9.158233 TGTATGTACTTTCCTTTTGTGTATAGC 57.842 33.333 0.00 0.00 0.00 2.97
2766 2894 9.158233 GTATGTACTTTCCTTTTGTGTATAGCA 57.842 33.333 0.00 0.00 0.00 3.49
2831 2965 8.494016 AGATAAAACTAGATGGTTTACACTGC 57.506 34.615 0.00 0.00 40.23 4.40
2835 2969 1.808411 AGATGGTTTACACTGCACGG 58.192 50.000 0.00 0.00 0.00 4.94
2875 3015 5.064198 GCCACATTATACGCAACTCAAAGTA 59.936 40.000 0.00 0.00 0.00 2.24
2970 3124 8.317679 AGAAAATCATAGTACAGCAGAGTTCTT 58.682 33.333 0.00 0.00 0.00 2.52
3022 3176 7.326789 CCTTACATTGAACATCATTCAACACAC 59.673 37.037 4.31 0.00 40.70 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.785511 AGTATGAGTACTTGCGTCTGTT 57.214 40.909 0.00 0.00 37.94 3.16
1 2 4.785511 AAGTATGAGTACTTGCGTCTGT 57.214 40.909 0.00 0.00 46.65 3.41
8 9 8.806741 CCGAACGGAGGAAGTATGAGTACTTG 62.807 50.000 7.53 0.00 43.06 3.16
9 10 6.888837 CCGAACGGAGGAAGTATGAGTACTT 61.889 48.000 7.53 0.77 44.37 2.24
10 11 3.626670 CGAACGGAGGAAGTATGAGTACT 59.373 47.826 0.00 0.00 42.93 2.73
11 12 3.243002 CCGAACGGAGGAAGTATGAGTAC 60.243 52.174 7.53 0.00 37.50 2.73
12 13 2.947652 CCGAACGGAGGAAGTATGAGTA 59.052 50.000 7.53 0.00 37.50 2.59
13 14 1.749634 CCGAACGGAGGAAGTATGAGT 59.250 52.381 7.53 0.00 37.50 3.41
14 15 2.022195 TCCGAACGGAGGAAGTATGAG 58.978 52.381 12.04 0.00 39.76 2.90
15 16 2.133281 TCCGAACGGAGGAAGTATGA 57.867 50.000 12.04 0.00 39.76 2.15
16 17 2.953466 TTCCGAACGGAGGAAGTATG 57.047 50.000 15.34 0.00 46.06 2.39
17 18 6.170846 AATATTTCCGAACGGAGGAAGTAT 57.829 37.500 15.34 13.82 46.10 2.12
21 22 4.581868 ACAAATATTTCCGAACGGAGGAA 58.418 39.130 15.34 9.10 46.06 3.36
22 23 4.186159 GACAAATATTTCCGAACGGAGGA 58.814 43.478 15.34 9.43 46.06 3.71
23 24 3.936453 TGACAAATATTTCCGAACGGAGG 59.064 43.478 15.34 4.52 46.06 4.30
24 25 5.734855 ATGACAAATATTTCCGAACGGAG 57.265 39.130 15.34 5.60 46.06 4.63
25 26 7.612668 TTAATGACAAATATTTCCGAACGGA 57.387 32.000 12.04 12.04 43.52 4.69
26 27 8.676454 TTTTAATGACAAATATTTCCGAACGG 57.324 30.769 6.94 6.94 0.00 4.44
52 53 9.607333 ACATCTAGATACATCCTCTTTTATCCA 57.393 33.333 4.54 0.00 0.00 3.41
98 99 9.893305 ACTTGTCATTAAAACGGATAAAAAGAG 57.107 29.630 0.00 0.00 0.00 2.85
105 106 9.976255 CGAAAATACTTGTCATTAAAACGGATA 57.024 29.630 0.00 0.00 0.00 2.59
106 107 7.966204 CCGAAAATACTTGTCATTAAAACGGAT 59.034 33.333 0.00 0.00 36.05 4.18
107 108 7.172875 TCCGAAAATACTTGTCATTAAAACGGA 59.827 33.333 0.00 0.00 39.65 4.69
108 109 7.269724 GTCCGAAAATACTTGTCATTAAAACGG 59.730 37.037 0.00 0.00 35.46 4.44
109 110 7.799447 TGTCCGAAAATACTTGTCATTAAAACG 59.201 33.333 0.00 0.00 0.00 3.60
110 111 9.113876 CTGTCCGAAAATACTTGTCATTAAAAC 57.886 33.333 0.00 0.00 0.00 2.43
111 112 9.058174 TCTGTCCGAAAATACTTGTCATTAAAA 57.942 29.630 0.00 0.00 0.00 1.52
112 113 8.610248 TCTGTCCGAAAATACTTGTCATTAAA 57.390 30.769 0.00 0.00 0.00 1.52
113 114 7.333423 CCTCTGTCCGAAAATACTTGTCATTAA 59.667 37.037 0.00 0.00 0.00 1.40
114 115 6.816640 CCTCTGTCCGAAAATACTTGTCATTA 59.183 38.462 0.00 0.00 0.00 1.90
115 116 5.643777 CCTCTGTCCGAAAATACTTGTCATT 59.356 40.000 0.00 0.00 0.00 2.57
116 117 5.046591 TCCTCTGTCCGAAAATACTTGTCAT 60.047 40.000 0.00 0.00 0.00 3.06
117 118 4.282449 TCCTCTGTCCGAAAATACTTGTCA 59.718 41.667 0.00 0.00 0.00 3.58
118 119 4.817517 TCCTCTGTCCGAAAATACTTGTC 58.182 43.478 0.00 0.00 0.00 3.18
119 120 4.884668 TCCTCTGTCCGAAAATACTTGT 57.115 40.909 0.00 0.00 0.00 3.16
120 121 6.743575 ATTTCCTCTGTCCGAAAATACTTG 57.256 37.500 0.00 0.00 32.08 3.16
125 126 9.490379 GTGTATATATTTCCTCTGTCCGAAAAT 57.510 33.333 0.00 0.00 32.08 1.82
126 127 7.650504 CGTGTATATATTTCCTCTGTCCGAAAA 59.349 37.037 0.00 0.00 32.08 2.29
127 128 7.143340 CGTGTATATATTTCCTCTGTCCGAAA 58.857 38.462 0.00 0.00 32.82 3.46
128 129 6.675026 CGTGTATATATTTCCTCTGTCCGAA 58.325 40.000 0.00 0.00 0.00 4.30
129 130 5.335426 GCGTGTATATATTTCCTCTGTCCGA 60.335 44.000 0.00 0.00 0.00 4.55
130 131 4.857588 GCGTGTATATATTTCCTCTGTCCG 59.142 45.833 0.00 0.00 0.00 4.79
131 132 5.779922 TGCGTGTATATATTTCCTCTGTCC 58.220 41.667 0.00 0.00 0.00 4.02
132 133 8.027189 TGTATGCGTGTATATATTTCCTCTGTC 58.973 37.037 0.00 0.00 0.00 3.51
133 134 7.813148 GTGTATGCGTGTATATATTTCCTCTGT 59.187 37.037 0.00 0.00 0.00 3.41
134 135 8.029522 AGTGTATGCGTGTATATATTTCCTCTG 58.970 37.037 0.00 0.00 0.00 3.35
135 136 8.123639 AGTGTATGCGTGTATATATTTCCTCT 57.876 34.615 0.00 0.00 0.00 3.69
136 137 8.758633 AAGTGTATGCGTGTATATATTTCCTC 57.241 34.615 0.00 0.00 0.00 3.71
161 162 9.476202 GTGCATGTGTGTGTTTATAGAGATATA 57.524 33.333 0.00 0.00 0.00 0.86
162 163 7.986889 TGTGCATGTGTGTGTTTATAGAGATAT 59.013 33.333 0.00 0.00 0.00 1.63
163 164 7.277760 GTGTGCATGTGTGTGTTTATAGAGATA 59.722 37.037 0.00 0.00 0.00 1.98
164 165 6.092670 GTGTGCATGTGTGTGTTTATAGAGAT 59.907 38.462 0.00 0.00 0.00 2.75
165 166 5.408299 GTGTGCATGTGTGTGTTTATAGAGA 59.592 40.000 0.00 0.00 0.00 3.10
166 167 5.409520 AGTGTGCATGTGTGTGTTTATAGAG 59.590 40.000 0.00 0.00 0.00 2.43
167 168 5.304778 AGTGTGCATGTGTGTGTTTATAGA 58.695 37.500 0.00 0.00 0.00 1.98
168 169 5.409520 AGAGTGTGCATGTGTGTGTTTATAG 59.590 40.000 0.00 0.00 0.00 1.31
169 170 5.304778 AGAGTGTGCATGTGTGTGTTTATA 58.695 37.500 0.00 0.00 0.00 0.98
170 171 4.136796 AGAGTGTGCATGTGTGTGTTTAT 58.863 39.130 0.00 0.00 0.00 1.40
171 172 3.540617 AGAGTGTGCATGTGTGTGTTTA 58.459 40.909 0.00 0.00 0.00 2.01
172 173 2.368439 AGAGTGTGCATGTGTGTGTTT 58.632 42.857 0.00 0.00 0.00 2.83
173 174 2.042686 AGAGTGTGCATGTGTGTGTT 57.957 45.000 0.00 0.00 0.00 3.32
174 175 2.158971 TGTAGAGTGTGCATGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
175 176 2.482864 TGTAGAGTGTGCATGTGTGTG 58.517 47.619 0.00 0.00 0.00 3.82
176 177 2.908688 TGTAGAGTGTGCATGTGTGT 57.091 45.000 0.00 0.00 0.00 3.72
177 178 3.593096 AGATGTAGAGTGTGCATGTGTG 58.407 45.455 0.00 0.00 30.44 3.82
178 179 3.969287 AGATGTAGAGTGTGCATGTGT 57.031 42.857 0.00 0.00 30.44 3.72
179 180 6.145209 GCTTATAGATGTAGAGTGTGCATGTG 59.855 42.308 0.00 0.00 30.44 3.21
180 181 6.183360 TGCTTATAGATGTAGAGTGTGCATGT 60.183 38.462 0.00 0.00 30.44 3.21
181 182 6.145209 GTGCTTATAGATGTAGAGTGTGCATG 59.855 42.308 0.00 0.00 30.44 4.06
182 183 6.183360 TGTGCTTATAGATGTAGAGTGTGCAT 60.183 38.462 0.00 0.00 33.51 3.96
183 184 5.127031 TGTGCTTATAGATGTAGAGTGTGCA 59.873 40.000 0.00 0.00 0.00 4.57
184 185 5.592054 TGTGCTTATAGATGTAGAGTGTGC 58.408 41.667 0.00 0.00 0.00 4.57
185 186 7.114106 CGAATGTGCTTATAGATGTAGAGTGTG 59.886 40.741 0.00 0.00 0.00 3.82
186 187 7.013369 TCGAATGTGCTTATAGATGTAGAGTGT 59.987 37.037 0.00 0.00 0.00 3.55
187 188 7.363431 TCGAATGTGCTTATAGATGTAGAGTG 58.637 38.462 0.00 0.00 0.00 3.51
188 189 7.445707 TCTCGAATGTGCTTATAGATGTAGAGT 59.554 37.037 0.00 0.00 0.00 3.24
189 190 7.811653 TCTCGAATGTGCTTATAGATGTAGAG 58.188 38.462 0.00 0.00 0.00 2.43
190 191 7.661847 TCTCTCGAATGTGCTTATAGATGTAGA 59.338 37.037 0.00 0.00 0.00 2.59
191 192 7.748683 GTCTCTCGAATGTGCTTATAGATGTAG 59.251 40.741 0.00 0.00 0.00 2.74
192 193 7.445707 AGTCTCTCGAATGTGCTTATAGATGTA 59.554 37.037 0.00 0.00 0.00 2.29
193 194 6.264292 AGTCTCTCGAATGTGCTTATAGATGT 59.736 38.462 0.00 0.00 0.00 3.06
194 195 6.581919 CAGTCTCTCGAATGTGCTTATAGATG 59.418 42.308 0.00 0.00 30.98 2.90
195 196 6.488344 TCAGTCTCTCGAATGTGCTTATAGAT 59.512 38.462 0.00 0.00 36.65 1.98
196 197 5.823045 TCAGTCTCTCGAATGTGCTTATAGA 59.177 40.000 0.00 0.00 36.65 1.98
197 198 6.066054 TCAGTCTCTCGAATGTGCTTATAG 57.934 41.667 0.00 0.00 36.65 1.31
198 199 5.506483 GCTCAGTCTCTCGAATGTGCTTATA 60.506 44.000 8.85 0.00 45.70 0.98
199 200 4.736168 GCTCAGTCTCTCGAATGTGCTTAT 60.736 45.833 8.85 0.00 45.70 1.73
200 201 3.428180 GCTCAGTCTCTCGAATGTGCTTA 60.428 47.826 8.85 0.00 45.70 3.09
201 202 2.673610 GCTCAGTCTCTCGAATGTGCTT 60.674 50.000 8.85 0.00 45.70 3.91
202 203 1.135141 GCTCAGTCTCTCGAATGTGCT 60.135 52.381 8.85 0.00 45.70 4.40
203 204 1.276415 GCTCAGTCTCTCGAATGTGC 58.724 55.000 1.97 1.97 44.03 4.57
204 205 1.796982 CGGCTCAGTCTCTCGAATGTG 60.797 57.143 0.00 0.00 36.65 3.21
205 206 0.453793 CGGCTCAGTCTCTCGAATGT 59.546 55.000 0.00 0.00 36.65 2.71
206 207 0.735471 TCGGCTCAGTCTCTCGAATG 59.265 55.000 0.00 0.00 36.62 2.67
207 208 0.736053 GTCGGCTCAGTCTCTCGAAT 59.264 55.000 0.00 0.00 0.00 3.34
208 209 0.605589 TGTCGGCTCAGTCTCTCGAA 60.606 55.000 0.00 0.00 0.00 3.71
209 210 0.393132 ATGTCGGCTCAGTCTCTCGA 60.393 55.000 0.00 0.00 0.00 4.04
210 211 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
211 212 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
212 213 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
213 214 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
214 215 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
215 216 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
216 217 4.679373 AAAGATGATATGTCGGCTCAGT 57.321 40.909 0.00 0.00 0.00 3.41
217 218 6.018589 TCTAAAGATGATATGTCGGCTCAG 57.981 41.667 0.00 0.00 0.00 3.35
218 219 6.596309 ATCTAAAGATGATATGTCGGCTCA 57.404 37.500 0.00 0.00 32.68 4.26
219 220 7.093354 TCAATCTAAAGATGATATGTCGGCTC 58.907 38.462 0.00 0.00 34.49 4.70
220 221 6.997655 TCAATCTAAAGATGATATGTCGGCT 58.002 36.000 0.00 0.00 34.49 5.52
221 222 7.600375 TCTTCAATCTAAAGATGATATGTCGGC 59.400 37.037 0.00 0.00 34.49 5.54
222 223 9.481340 TTCTTCAATCTAAAGATGATATGTCGG 57.519 33.333 0.00 0.00 34.49 4.79
232 233 9.339850 CCATGATGACTTCTTCAATCTAAAGAT 57.660 33.333 0.00 0.00 37.92 2.40
233 234 7.772292 CCCATGATGACTTCTTCAATCTAAAGA 59.228 37.037 0.00 0.00 37.92 2.52
234 235 7.772292 TCCCATGATGACTTCTTCAATCTAAAG 59.228 37.037 0.00 0.00 37.92 1.85
235 236 7.632861 TCCCATGATGACTTCTTCAATCTAAA 58.367 34.615 0.00 0.00 37.92 1.85
236 237 7.199167 TCCCATGATGACTTCTTCAATCTAA 57.801 36.000 0.00 0.00 37.92 2.10
237 238 6.813293 TCCCATGATGACTTCTTCAATCTA 57.187 37.500 0.00 0.00 37.92 1.98
238 239 5.705397 TCCCATGATGACTTCTTCAATCT 57.295 39.130 0.00 0.00 37.92 2.40
239 240 5.649395 TGTTCCCATGATGACTTCTTCAATC 59.351 40.000 0.00 0.00 37.92 2.67
240 241 5.573219 TGTTCCCATGATGACTTCTTCAAT 58.427 37.500 0.00 0.00 37.92 2.57
241 242 4.984295 TGTTCCCATGATGACTTCTTCAA 58.016 39.130 0.00 0.00 37.92 2.69
242 243 4.639078 TGTTCCCATGATGACTTCTTCA 57.361 40.909 0.00 0.00 39.11 3.02
243 244 5.435291 AGATGTTCCCATGATGACTTCTTC 58.565 41.667 0.00 0.00 0.00 2.87
244 245 5.435291 GAGATGTTCCCATGATGACTTCTT 58.565 41.667 0.00 0.00 29.85 2.52
245 246 4.141528 GGAGATGTTCCCATGATGACTTCT 60.142 45.833 0.00 2.65 40.37 2.85
246 247 4.133078 GGAGATGTTCCCATGATGACTTC 58.867 47.826 0.00 0.00 40.37 3.01
247 248 4.162040 GGAGATGTTCCCATGATGACTT 57.838 45.455 0.00 0.00 40.37 3.01
248 249 3.853355 GGAGATGTTCCCATGATGACT 57.147 47.619 0.00 0.00 40.37 3.41
259 260 3.506810 CGTTCAGTGAGAGGAGATGTTC 58.493 50.000 0.00 0.00 0.00 3.18
260 261 2.353208 GCGTTCAGTGAGAGGAGATGTT 60.353 50.000 0.00 0.00 0.00 2.71
261 262 1.203523 GCGTTCAGTGAGAGGAGATGT 59.796 52.381 0.00 0.00 0.00 3.06
262 263 1.796982 CGCGTTCAGTGAGAGGAGATG 60.797 57.143 0.00 0.00 0.00 2.90
263 264 0.453793 CGCGTTCAGTGAGAGGAGAT 59.546 55.000 0.00 0.00 0.00 2.75
264 265 0.889638 ACGCGTTCAGTGAGAGGAGA 60.890 55.000 5.58 0.00 0.00 3.71
265 266 0.803117 TACGCGTTCAGTGAGAGGAG 59.197 55.000 20.78 0.00 0.00 3.69
266 267 0.520404 GTACGCGTTCAGTGAGAGGA 59.480 55.000 20.78 0.00 0.00 3.71
267 268 0.456312 GGTACGCGTTCAGTGAGAGG 60.456 60.000 20.78 0.00 0.00 3.69
268 269 3.017232 GGTACGCGTTCAGTGAGAG 57.983 57.895 20.78 0.00 0.00 3.20
282 283 3.817148 TTTCAGAATTTTCGGCGGTAC 57.183 42.857 7.21 0.00 0.00 3.34
283 284 6.497785 TTTATTTCAGAATTTTCGGCGGTA 57.502 33.333 7.21 0.00 0.00 4.02
284 285 5.379732 TTTATTTCAGAATTTTCGGCGGT 57.620 34.783 7.21 0.00 0.00 5.68
285 286 5.458779 GGATTTATTTCAGAATTTTCGGCGG 59.541 40.000 7.21 0.00 0.00 6.13
286 287 6.020678 GTGGATTTATTTCAGAATTTTCGGCG 60.021 38.462 0.00 0.00 0.00 6.46
287 288 6.811170 TGTGGATTTATTTCAGAATTTTCGGC 59.189 34.615 0.00 0.00 0.00 5.54
288 289 7.009540 GCTGTGGATTTATTTCAGAATTTTCGG 59.990 37.037 0.00 0.00 0.00 4.30
289 290 7.541783 TGCTGTGGATTTATTTCAGAATTTTCG 59.458 33.333 0.00 0.00 0.00 3.46
290 291 8.761575 TGCTGTGGATTTATTTCAGAATTTTC 57.238 30.769 0.00 0.00 0.00 2.29
291 292 9.729281 ATTGCTGTGGATTTATTTCAGAATTTT 57.271 25.926 0.00 0.00 0.00 1.82
292 293 9.158233 CATTGCTGTGGATTTATTTCAGAATTT 57.842 29.630 0.00 0.00 0.00 1.82
293 294 7.279313 GCATTGCTGTGGATTTATTTCAGAATT 59.721 33.333 0.16 0.00 0.00 2.17
294 295 6.759827 GCATTGCTGTGGATTTATTTCAGAAT 59.240 34.615 0.16 0.00 0.00 2.40
295 296 6.101332 GCATTGCTGTGGATTTATTTCAGAA 58.899 36.000 0.16 0.00 0.00 3.02
296 297 5.653507 GCATTGCTGTGGATTTATTTCAGA 58.346 37.500 0.16 0.00 0.00 3.27
297 298 4.501559 CGCATTGCTGTGGATTTATTTCAG 59.498 41.667 7.12 0.00 0.00 3.02
298 299 4.157472 TCGCATTGCTGTGGATTTATTTCA 59.843 37.500 7.12 0.00 33.56 2.69
299 300 4.671377 TCGCATTGCTGTGGATTTATTTC 58.329 39.130 7.12 0.00 33.56 2.17
300 301 4.158394 ACTCGCATTGCTGTGGATTTATTT 59.842 37.500 7.12 0.00 33.56 1.40
301 302 3.696051 ACTCGCATTGCTGTGGATTTATT 59.304 39.130 7.12 0.00 33.56 1.40
302 303 3.282021 ACTCGCATTGCTGTGGATTTAT 58.718 40.909 7.12 0.00 33.56 1.40
303 304 2.710377 ACTCGCATTGCTGTGGATTTA 58.290 42.857 7.12 0.00 33.56 1.40
304 305 1.538047 ACTCGCATTGCTGTGGATTT 58.462 45.000 7.12 0.00 33.56 2.17
305 306 2.401583 TACTCGCATTGCTGTGGATT 57.598 45.000 7.12 0.00 33.56 3.01
306 307 2.158914 TGATACTCGCATTGCTGTGGAT 60.159 45.455 7.12 3.87 33.56 3.41
307 308 1.206849 TGATACTCGCATTGCTGTGGA 59.793 47.619 7.12 0.00 33.56 4.02
308 309 1.655484 TGATACTCGCATTGCTGTGG 58.345 50.000 7.12 0.00 33.56 4.17
309 310 2.931969 TCTTGATACTCGCATTGCTGTG 59.068 45.455 7.12 4.37 0.00 3.66
310 311 2.932614 GTCTTGATACTCGCATTGCTGT 59.067 45.455 7.12 8.07 0.00 4.40
311 312 3.193263 AGTCTTGATACTCGCATTGCTG 58.807 45.455 7.12 2.18 0.00 4.41
312 313 3.533606 AGTCTTGATACTCGCATTGCT 57.466 42.857 7.12 0.00 0.00 3.91
313 314 5.718649 TTAAGTCTTGATACTCGCATTGC 57.281 39.130 0.00 0.00 0.00 3.56
314 315 6.703607 AGGATTAAGTCTTGATACTCGCATTG 59.296 38.462 0.00 0.00 0.00 2.82
315 316 6.703607 CAGGATTAAGTCTTGATACTCGCATT 59.296 38.462 0.00 0.00 36.07 3.56
316 317 6.040955 TCAGGATTAAGTCTTGATACTCGCAT 59.959 38.462 0.00 0.00 37.95 4.73
317 318 5.359860 TCAGGATTAAGTCTTGATACTCGCA 59.640 40.000 0.00 0.00 37.95 5.10
318 319 5.833082 TCAGGATTAAGTCTTGATACTCGC 58.167 41.667 0.00 0.00 37.95 5.03
325 326 6.443849 ACCCACTTATCAGGATTAAGTCTTGA 59.556 38.462 0.00 3.46 45.61 3.02
326 327 6.540189 CACCCACTTATCAGGATTAAGTCTTG 59.460 42.308 0.00 0.00 35.38 3.02
327 328 6.215636 ACACCCACTTATCAGGATTAAGTCTT 59.784 38.462 0.00 0.00 32.32 3.01
328 329 5.726793 ACACCCACTTATCAGGATTAAGTCT 59.273 40.000 0.00 0.00 32.32 3.24
329 330 5.990668 ACACCCACTTATCAGGATTAAGTC 58.009 41.667 0.00 0.00 32.32 3.01
330 331 6.672657 AGTACACCCACTTATCAGGATTAAGT 59.327 38.462 0.00 0.00 34.70 2.24
331 332 7.070074 AGAGTACACCCACTTATCAGGATTAAG 59.930 40.741 0.00 0.00 0.00 1.85
332 333 6.901300 AGAGTACACCCACTTATCAGGATTAA 59.099 38.462 0.00 0.00 0.00 1.40
333 334 6.441222 AGAGTACACCCACTTATCAGGATTA 58.559 40.000 0.00 0.00 0.00 1.75
334 335 5.281314 AGAGTACACCCACTTATCAGGATT 58.719 41.667 0.00 0.00 0.00 3.01
335 336 4.884961 AGAGTACACCCACTTATCAGGAT 58.115 43.478 0.00 0.00 0.00 3.24
336 337 4.264217 TGAGAGTACACCCACTTATCAGGA 60.264 45.833 0.00 0.00 0.00 3.86
337 338 4.023980 TGAGAGTACACCCACTTATCAGG 58.976 47.826 0.00 0.00 0.00 3.86
338 339 4.707448 AGTGAGAGTACACCCACTTATCAG 59.293 45.833 1.64 0.00 41.12 2.90
339 340 4.462834 CAGTGAGAGTACACCCACTTATCA 59.537 45.833 4.75 0.00 41.12 2.15
340 341 4.705507 TCAGTGAGAGTACACCCACTTATC 59.294 45.833 4.75 0.00 41.12 1.75
341 342 4.673968 TCAGTGAGAGTACACCCACTTAT 58.326 43.478 4.75 0.00 41.12 1.73
342 343 4.108501 TCAGTGAGAGTACACCCACTTA 57.891 45.455 4.75 0.00 41.12 2.24
343 344 2.958818 TCAGTGAGAGTACACCCACTT 58.041 47.619 4.75 0.00 41.12 3.16
344 345 2.628657 GTTCAGTGAGAGTACACCCACT 59.371 50.000 1.64 1.64 41.12 4.00
345 346 2.607282 CGTTCAGTGAGAGTACACCCAC 60.607 54.545 0.00 0.00 41.12 4.61
346 347 1.611977 CGTTCAGTGAGAGTACACCCA 59.388 52.381 0.00 0.00 41.12 4.51
347 348 1.669211 GCGTTCAGTGAGAGTACACCC 60.669 57.143 0.00 0.00 41.12 4.61
348 349 1.699343 GCGTTCAGTGAGAGTACACC 58.301 55.000 0.00 0.00 41.12 4.16
349 350 1.328439 CGCGTTCAGTGAGAGTACAC 58.672 55.000 0.00 0.00 40.60 2.90
350 351 0.949397 ACGCGTTCAGTGAGAGTACA 59.051 50.000 5.58 0.00 0.00 2.90
351 352 2.503871 GTACGCGTTCAGTGAGAGTAC 58.496 52.381 20.78 9.54 34.96 2.73
352 353 1.466167 GGTACGCGTTCAGTGAGAGTA 59.534 52.381 20.78 0.00 0.00 2.59
353 354 0.240411 GGTACGCGTTCAGTGAGAGT 59.760 55.000 20.78 0.00 0.00 3.24
374 375 8.647226 GTTGTGGATTTATTTCAGAATTTTCGG 58.353 33.333 0.00 0.00 0.00 4.30
382 383 6.072230 TCGCATTGTTGTGGATTTATTTCAGA 60.072 34.615 0.00 0.00 34.03 3.27
397 398 5.536554 AAGTCTTGATACTCGCATTGTTG 57.463 39.130 0.00 0.00 0.00 3.33
398 399 7.011482 GGATTAAGTCTTGATACTCGCATTGTT 59.989 37.037 0.00 0.00 0.00 2.83
400 401 6.703607 AGGATTAAGTCTTGATACTCGCATTG 59.296 38.462 0.00 0.00 0.00 2.82
414 415 4.163078 CACCCACTCATCAGGATTAAGTCT 59.837 45.833 0.00 0.00 0.00 3.24
426 427 0.466124 GGCTAGGACACCCACTCATC 59.534 60.000 0.00 0.00 33.88 2.92
430 431 0.252696 TGATGGCTAGGACACCCACT 60.253 55.000 0.00 0.00 33.88 4.00
432 433 1.367346 TTTGATGGCTAGGACACCCA 58.633 50.000 0.00 0.00 33.88 4.51
433 434 2.092323 GTTTTGATGGCTAGGACACCC 58.908 52.381 0.00 0.00 0.00 4.61
434 435 3.073274 AGTTTTGATGGCTAGGACACC 57.927 47.619 0.00 0.00 0.00 4.16
436 437 4.079253 GGAAAGTTTTGATGGCTAGGACA 58.921 43.478 0.00 0.00 0.00 4.02
443 455 5.990996 TCAAGAAATGGAAAGTTTTGATGGC 59.009 36.000 0.00 0.00 0.00 4.40
448 460 8.076178 AGTACGATCAAGAAATGGAAAGTTTTG 58.924 33.333 0.00 0.00 0.00 2.44
449 461 8.076178 CAGTACGATCAAGAAATGGAAAGTTTT 58.924 33.333 0.00 0.00 0.00 2.43
469 488 6.910536 AAATGGAAAGCTTATCTCAGTACG 57.089 37.500 0.00 0.00 0.00 3.67
472 491 6.127897 CCGAAAAATGGAAAGCTTATCTCAGT 60.128 38.462 0.00 0.00 0.00 3.41
495 515 3.630148 CGCCACGATTAGCTGCCG 61.630 66.667 0.00 0.00 0.00 5.69
534 554 0.391528 TGGATGTGATCGGCAGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
538 558 1.600957 GATTGTGGATGTGATCGGCAG 59.399 52.381 0.00 0.00 0.00 4.85
586 643 5.140454 AGGGTAGGGATAAACATTGCATTC 58.860 41.667 0.00 0.00 0.00 2.67
613 670 6.068461 TGGGAGTGGTTAATTGCTAATGTA 57.932 37.500 0.00 0.00 0.00 2.29
614 671 4.929479 TGGGAGTGGTTAATTGCTAATGT 58.071 39.130 0.00 0.00 0.00 2.71
615 672 6.469782 AATGGGAGTGGTTAATTGCTAATG 57.530 37.500 0.00 0.00 0.00 1.90
616 673 8.602472 TTAAATGGGAGTGGTTAATTGCTAAT 57.398 30.769 0.00 0.00 0.00 1.73
617 674 8.602472 ATTAAATGGGAGTGGTTAATTGCTAA 57.398 30.769 0.00 0.00 0.00 3.09
644 701 1.013323 CGCGCGTATGAGTTGAAGC 60.013 57.895 24.19 0.00 0.00 3.86
645 702 1.013323 GCGCGCGTATGAGTTGAAG 60.013 57.895 32.35 0.00 0.00 3.02
671 728 2.514824 GGATCAAGGAGCGCCCAC 60.515 66.667 15.92 1.71 37.41 4.61
707 764 2.592861 GATGGATGCTCGTGGCCC 60.593 66.667 0.00 0.00 40.92 5.80
711 768 1.005804 CGGATCGATGGATGCTCGTG 61.006 60.000 0.54 0.00 38.72 4.35
799 859 0.179006 GGATGGGTGATGAGGAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
806 866 1.833630 GTCAGACTGGATGGGTGATGA 59.166 52.381 1.81 0.00 0.00 2.92
807 867 1.134280 GGTCAGACTGGATGGGTGATG 60.134 57.143 1.81 0.00 0.00 3.07
808 868 1.207791 GGTCAGACTGGATGGGTGAT 58.792 55.000 1.81 0.00 0.00 3.06
836 896 2.427506 ACGCCAGAATTCTTCTCAACC 58.572 47.619 4.86 0.00 38.11 3.77
837 897 3.120165 GGAACGCCAGAATTCTTCTCAAC 60.120 47.826 4.86 0.00 38.11 3.18
838 898 3.074412 GGAACGCCAGAATTCTTCTCAA 58.926 45.455 4.86 0.00 38.11 3.02
839 899 2.699954 GGAACGCCAGAATTCTTCTCA 58.300 47.619 4.86 0.00 38.11 3.27
876 936 2.426024 GGATATGCATCATCATGGCACC 59.574 50.000 0.19 0.00 40.83 5.01
882 942 2.793288 TGCGGGATATGCATCATCAT 57.207 45.000 0.19 0.00 37.44 2.45
883 943 2.565046 TTGCGGGATATGCATCATCA 57.435 45.000 0.19 0.00 42.84 3.07
884 944 3.693085 AGAATTGCGGGATATGCATCATC 59.307 43.478 0.19 5.09 42.84 2.92
885 945 3.693085 GAGAATTGCGGGATATGCATCAT 59.307 43.478 0.19 0.00 42.84 2.45
886 946 3.076621 GAGAATTGCGGGATATGCATCA 58.923 45.455 0.19 0.00 42.84 3.07
887 947 2.094894 CGAGAATTGCGGGATATGCATC 59.905 50.000 0.19 0.00 42.84 3.91
908 968 2.409870 CGGTGGAAATGGGCAGAGC 61.410 63.158 0.00 0.00 0.00 4.09
914 974 0.750182 ATAACGGCGGTGGAAATGGG 60.750 55.000 8.19 0.00 0.00 4.00
956 1028 0.873743 GCAAGAAGATCGCGAGGAGG 60.874 60.000 16.66 1.13 0.00 4.30
994 1066 1.919600 GAGGAGCAGGCCATCTTGGT 61.920 60.000 5.01 0.00 40.46 3.67
995 1067 1.153005 GAGGAGCAGGCCATCTTGG 60.153 63.158 5.01 0.00 41.55 3.61
996 1068 0.255318 AAGAGGAGCAGGCCATCTTG 59.745 55.000 5.01 0.00 29.91 3.02
997 1069 0.545646 GAAGAGGAGCAGGCCATCTT 59.454 55.000 5.01 4.26 32.10 2.40
998 1070 1.344191 GGAAGAGGAGCAGGCCATCT 61.344 60.000 5.01 0.00 0.00 2.90
1076 1148 1.150081 CCCATGAAGCCTAGGCCTG 59.850 63.158 30.42 20.56 43.17 4.85
1082 1154 2.032860 GAGCTCGCCCATGAAGCCTA 62.033 60.000 0.00 0.00 0.00 3.93
1083 1155 3.397613 GAGCTCGCCCATGAAGCCT 62.398 63.158 0.00 0.00 0.00 4.58
1116 1188 2.597520 GTGTCTTCACCTTCTCTACGC 58.402 52.381 0.00 0.00 38.51 4.42
1139 1211 3.048941 GAGAACGAGTCGTCCCCGG 62.049 68.421 20.18 0.00 39.99 5.73
1141 1213 2.883621 GGAGAACGAGTCGTCCCC 59.116 66.667 20.18 15.79 39.99 4.81
1152 1224 1.586564 CGCCATCGACTCGGAGAAC 60.587 63.158 12.86 4.59 38.10 3.01
1153 1225 2.771639 CCGCCATCGACTCGGAGAA 61.772 63.158 12.86 0.00 45.53 2.87
1154 1226 3.209812 CCGCCATCGACTCGGAGA 61.210 66.667 12.86 0.00 45.53 3.71
1169 1241 3.264897 CGGAATCCAAGCTCGCCG 61.265 66.667 0.00 0.00 0.00 6.46
1173 1245 3.577313 GCGCCGGAATCCAAGCTC 61.577 66.667 5.05 0.00 0.00 4.09
1396 1475 2.799412 CGCTCACTGAGAAGGAATATGC 59.201 50.000 10.45 0.00 0.00 3.14
1397 1476 4.313277 TCGCTCACTGAGAAGGAATATG 57.687 45.455 10.45 0.00 0.00 1.78
1398 1477 5.344743 TTTCGCTCACTGAGAAGGAATAT 57.655 39.130 10.45 0.00 35.96 1.28
1399 1478 4.801330 TTTCGCTCACTGAGAAGGAATA 57.199 40.909 10.45 0.12 35.96 1.75
1402 1481 3.006859 TGATTTTCGCTCACTGAGAAGGA 59.993 43.478 10.45 0.98 35.96 3.36
1404 1483 4.997905 TTGATTTTCGCTCACTGAGAAG 57.002 40.909 10.45 3.19 35.96 2.85
1406 1485 4.816385 AGTTTTGATTTTCGCTCACTGAGA 59.184 37.500 10.45 0.00 0.00 3.27
1407 1486 4.908156 CAGTTTTGATTTTCGCTCACTGAG 59.092 41.667 1.21 1.21 0.00 3.35
1410 1489 5.239306 TCATCAGTTTTGATTTTCGCTCACT 59.761 36.000 0.00 0.00 42.12 3.41
1411 1490 5.340667 GTCATCAGTTTTGATTTTCGCTCAC 59.659 40.000 0.00 0.00 42.12 3.51
1412 1491 5.008514 TGTCATCAGTTTTGATTTTCGCTCA 59.991 36.000 0.00 0.00 42.12 4.26
1413 1492 5.451908 TGTCATCAGTTTTGATTTTCGCTC 58.548 37.500 0.00 0.00 42.12 5.03
1414 1493 5.437289 TGTCATCAGTTTTGATTTTCGCT 57.563 34.783 0.00 0.00 42.12 4.93
1415 1494 6.198966 AGTTTGTCATCAGTTTTGATTTTCGC 59.801 34.615 0.00 0.00 42.12 4.70
1417 1496 8.534778 GTCAGTTTGTCATCAGTTTTGATTTTC 58.465 33.333 0.00 0.00 42.12 2.29
1432 1513 2.148916 AGCGAATCGTCAGTTTGTCA 57.851 45.000 4.07 0.00 0.00 3.58
1433 1514 2.731976 AGAAGCGAATCGTCAGTTTGTC 59.268 45.455 4.07 0.00 0.00 3.18
1435 1516 2.731451 TGAGAAGCGAATCGTCAGTTTG 59.269 45.455 4.07 0.00 0.00 2.93
1437 1518 2.288213 TGTGAGAAGCGAATCGTCAGTT 60.288 45.455 4.07 0.00 0.00 3.16
1439 1520 1.916651 CTGTGAGAAGCGAATCGTCAG 59.083 52.381 4.07 0.00 0.00 3.51
1440 1521 1.402852 CCTGTGAGAAGCGAATCGTCA 60.403 52.381 4.07 0.00 0.00 4.35
1441 1522 1.135373 TCCTGTGAGAAGCGAATCGTC 60.135 52.381 4.07 0.00 0.00 4.20
1444 1525 2.266554 CTGTCCTGTGAGAAGCGAATC 58.733 52.381 0.00 0.00 0.00 2.52
1449 1530 1.376553 GCCCTGTCCTGTGAGAAGC 60.377 63.158 0.00 0.00 0.00 3.86
1511 1592 0.452784 GCAAGCATTTGACGTCGGAC 60.453 55.000 11.62 0.00 36.36 4.79
1580 1661 1.066114 GAAGCGGTGAAGTCGACGAG 61.066 60.000 10.46 0.54 0.00 4.18
1588 1669 0.934496 TTGAACGTGAAGCGGTGAAG 59.066 50.000 0.00 0.00 42.72 3.02
1593 1674 2.966309 GCCCTTGAACGTGAAGCGG 61.966 63.158 0.00 0.10 46.52 5.52
1686 1767 3.970746 AAAGGCCCCTGCTCCATGC 62.971 63.158 0.00 0.00 43.25 4.06
1687 1768 1.305549 AAAAGGCCCCTGCTCCATG 60.306 57.895 0.00 0.00 37.74 3.66
1688 1769 1.000866 GAAAAGGCCCCTGCTCCAT 59.999 57.895 0.00 0.00 37.74 3.41
1689 1770 2.440599 GAAAAGGCCCCTGCTCCA 59.559 61.111 0.00 0.00 37.74 3.86
1691 1772 3.443925 GCGAAAAGGCCCCTGCTC 61.444 66.667 0.00 0.00 37.74 4.26
1693 1774 4.056125 GTGCGAAAAGGCCCCTGC 62.056 66.667 0.00 0.00 0.00 4.85
1694 1775 2.597217 TGTGCGAAAAGGCCCCTG 60.597 61.111 0.00 0.00 0.00 4.45
1695 1776 2.282462 CTGTGCGAAAAGGCCCCT 60.282 61.111 0.00 0.00 0.00 4.79
1696 1777 1.866853 CTTCTGTGCGAAAAGGCCCC 61.867 60.000 0.00 0.00 0.00 5.80
1731 1812 3.194542 ACAGCTCTTTCTTGCTCTCGTAT 59.805 43.478 0.00 0.00 37.44 3.06
1735 1816 1.464219 GCACAGCTCTTTCTTGCTCTC 59.536 52.381 0.00 0.00 37.44 3.20
1766 1847 1.268948 GCATTGCCTTTAGCTAGCTGC 60.269 52.381 27.68 21.17 44.23 5.25
1768 1849 2.425143 TGCATTGCCTTTAGCTAGCT 57.575 45.000 23.12 23.12 44.23 3.32
1789 1874 3.037549 TCTCACCCCATTTTGCAAAACT 58.962 40.909 26.05 12.87 0.00 2.66
1796 1881 7.341769 TGGTAAATCTTATCTCACCCCATTTTG 59.658 37.037 0.00 0.00 0.00 2.44
1799 1884 6.389869 TCTGGTAAATCTTATCTCACCCCATT 59.610 38.462 0.00 0.00 0.00 3.16
1806 1891 8.595362 TTCTGTCTCTGGTAAATCTTATCTCA 57.405 34.615 0.00 0.00 0.00 3.27
1814 1899 7.496263 GGGTATTCTTTCTGTCTCTGGTAAATC 59.504 40.741 0.00 0.00 0.00 2.17
1815 1900 7.339482 GGGTATTCTTTCTGTCTCTGGTAAAT 58.661 38.462 0.00 0.00 0.00 1.40
1822 1922 4.471747 GGAAGGGGTATTCTTTCTGTCTCT 59.528 45.833 0.00 0.00 0.00 3.10
1826 1926 4.292306 ACATGGAAGGGGTATTCTTTCTGT 59.708 41.667 0.00 0.00 0.00 3.41
1835 1935 2.478292 ACGAAGACATGGAAGGGGTAT 58.522 47.619 0.00 0.00 0.00 2.73
1856 1961 2.460669 TGCAGAGATCTCTAGTGGCAA 58.539 47.619 25.24 13.63 37.98 4.52
1862 1967 5.321959 TCAGTTGTTGCAGAGATCTCTAG 57.678 43.478 24.69 18.61 37.98 2.43
1870 1975 1.534595 GGAGCTTCAGTTGTTGCAGAG 59.465 52.381 0.00 0.00 0.00 3.35
1899 2004 6.038356 CACAGATGAAAACAGAAGCAAAACT 58.962 36.000 0.00 0.00 0.00 2.66
1911 2016 9.906660 TTTATAACATTGGTCACAGATGAAAAC 57.093 29.630 0.00 0.00 36.31 2.43
1920 2025 9.290988 ACATACAGTTTTATAACATTGGTCACA 57.709 29.630 0.00 0.00 36.70 3.58
1934 2039 9.154847 CATCATCAGACAGAACATACAGTTTTA 57.845 33.333 0.00 0.00 41.51 1.52
1935 2040 7.361542 GCATCATCAGACAGAACATACAGTTTT 60.362 37.037 0.00 0.00 41.51 2.43
1936 2041 6.093219 GCATCATCAGACAGAACATACAGTTT 59.907 38.462 0.00 0.00 41.51 2.66
1938 2043 5.114780 GCATCATCAGACAGAACATACAGT 58.885 41.667 0.00 0.00 0.00 3.55
1939 2044 4.510711 GGCATCATCAGACAGAACATACAG 59.489 45.833 0.00 0.00 0.00 2.74
1940 2045 4.080975 TGGCATCATCAGACAGAACATACA 60.081 41.667 0.00 0.00 0.00 2.29
1941 2046 4.445453 TGGCATCATCAGACAGAACATAC 58.555 43.478 0.00 0.00 0.00 2.39
1946 2055 3.986996 TCTTGGCATCATCAGACAGAA 57.013 42.857 0.00 0.00 0.00 3.02
1949 2058 3.421919 TGTTCTTGGCATCATCAGACA 57.578 42.857 0.00 0.00 0.00 3.41
1963 2072 7.231317 TCAGTTCAATCTTAGCCAATTGTTCTT 59.769 33.333 4.43 0.00 35.02 2.52
1966 2075 6.265196 TGTCAGTTCAATCTTAGCCAATTGTT 59.735 34.615 4.43 0.00 35.02 2.83
1973 2082 4.515191 TGTGTTGTCAGTTCAATCTTAGCC 59.485 41.667 0.00 0.00 0.00 3.93
1977 2086 6.096705 TGGATTTGTGTTGTCAGTTCAATCTT 59.903 34.615 0.00 0.00 0.00 2.40
1981 2090 5.850557 ATGGATTTGTGTTGTCAGTTCAA 57.149 34.783 0.00 0.00 0.00 2.69
2013 2122 9.952030 TCACATCAACCTCTGTTTATTATACAA 57.048 29.630 0.00 0.00 30.42 2.41
2014 2123 9.952030 TTCACATCAACCTCTGTTTATTATACA 57.048 29.630 0.00 0.00 30.42 2.29
2016 2125 9.391006 GGTTCACATCAACCTCTGTTTATTATA 57.609 33.333 0.00 0.00 42.46 0.98
2017 2126 7.888021 TGGTTCACATCAACCTCTGTTTATTAT 59.112 33.333 4.10 0.00 45.54 1.28
2030 2139 3.311106 CATTGTGCTGGTTCACATCAAC 58.689 45.455 0.00 0.00 45.26 3.18
2031 2140 2.288334 GCATTGTGCTGGTTCACATCAA 60.288 45.455 0.00 0.00 45.26 2.57
2033 2142 1.270274 TGCATTGTGCTGGTTCACATC 59.730 47.619 3.41 0.00 45.26 3.06
2040 2149 3.379372 GTCTGAATATGCATTGTGCTGGT 59.621 43.478 3.54 0.00 45.31 4.00
2069 2178 6.356556 TGTGTATTTAGACATTGCTAGCCAT 58.643 36.000 13.29 3.33 0.00 4.40
2071 2180 6.677781 TTGTGTATTTAGACATTGCTAGCC 57.322 37.500 13.29 0.00 29.12 3.93
2085 2194 6.344500 TGAAAGTGCCAAACATTGTGTATTT 58.656 32.000 0.00 0.00 0.00 1.40
2127 2236 3.868077 CAGTGCTGGAGTACATTAAGCTC 59.132 47.826 0.00 0.14 34.92 4.09
2168 2277 7.619050 ACTGAGTTCTACAGATGTGATTTCAT 58.381 34.615 0.00 0.00 38.55 2.57
2176 2285 6.902771 AGTTGTACTGAGTTCTACAGATGT 57.097 37.500 6.58 0.00 38.55 3.06
2187 2296 2.093181 TGCACCACAAGTTGTACTGAGT 60.093 45.455 8.49 0.00 0.00 3.41
2214 2323 7.094248 TGTGAGAGGATTGGTGATACAAATTTG 60.094 37.037 16.67 16.67 33.48 2.32
2215 2324 6.947733 TGTGAGAGGATTGGTGATACAAATTT 59.052 34.615 0.00 0.00 33.48 1.82
2239 2348 4.096833 AGTGCATGGCTTATGTGTTGTATG 59.903 41.667 0.00 0.00 39.08 2.39
2240 2349 4.272489 AGTGCATGGCTTATGTGTTGTAT 58.728 39.130 0.00 0.00 39.08 2.29
2241 2350 3.684908 AGTGCATGGCTTATGTGTTGTA 58.315 40.909 0.00 0.00 39.08 2.41
2250 2359 1.003464 TGCTCAGAAGTGCATGGCTTA 59.997 47.619 0.00 0.00 39.15 3.09
2253 2362 0.815734 ATTGCTCAGAAGTGCATGGC 59.184 50.000 0.00 0.00 43.05 4.40
2277 2386 7.014038 GCAAATTTTCCACTGATCTCTATGGAT 59.986 37.037 8.13 0.00 40.87 3.41
2278 2387 6.319658 GCAAATTTTCCACTGATCTCTATGGA 59.680 38.462 0.00 0.00 39.50 3.41
2286 2395 4.525912 ACCAGCAAATTTTCCACTGATC 57.474 40.909 8.22 0.00 0.00 2.92
2320 2436 5.123502 GGACTCATCTTCAACTACGTCAGTA 59.876 44.000 0.00 0.00 36.04 2.74
2329 2445 5.240183 CACAAATGTGGACTCATCTTCAACT 59.760 40.000 5.63 0.00 42.10 3.16
2330 2446 5.239306 TCACAAATGTGGACTCATCTTCAAC 59.761 40.000 13.22 0.00 45.65 3.18
2332 2448 4.971939 TCACAAATGTGGACTCATCTTCA 58.028 39.130 13.22 0.00 45.65 3.02
2333 2449 6.149973 TGAATCACAAATGTGGACTCATCTTC 59.850 38.462 13.22 5.40 45.65 2.87
2334 2450 6.005823 TGAATCACAAATGTGGACTCATCTT 58.994 36.000 13.22 0.00 45.65 2.40
2335 2451 5.563592 TGAATCACAAATGTGGACTCATCT 58.436 37.500 13.22 0.00 45.65 2.90
2336 2452 5.885230 TGAATCACAAATGTGGACTCATC 57.115 39.130 13.22 4.60 45.65 2.92
2337 2453 6.005823 TCTTGAATCACAAATGTGGACTCAT 58.994 36.000 13.22 0.00 45.65 2.90
2338 2454 5.375773 TCTTGAATCACAAATGTGGACTCA 58.624 37.500 13.22 10.29 45.65 3.41
2339 2455 5.947228 TCTTGAATCACAAATGTGGACTC 57.053 39.130 13.22 8.16 45.65 3.36
2340 2456 6.906157 ATTCTTGAATCACAAATGTGGACT 57.094 33.333 13.22 0.00 45.65 3.85
2341 2457 7.373493 AGAATTCTTGAATCACAAATGTGGAC 58.627 34.615 13.22 6.24 45.65 4.02
2342 2458 7.528996 AGAATTCTTGAATCACAAATGTGGA 57.471 32.000 13.22 1.60 45.65 4.02
2343 2459 9.132521 GTAAGAATTCTTGAATCACAAATGTGG 57.867 33.333 27.37 0.00 40.44 4.17
2344 2460 9.681692 TGTAAGAATTCTTGAATCACAAATGTG 57.318 29.630 27.37 7.22 40.89 3.21
2378 2495 1.136110 CCTCAAAGTTGTTTTGGCGGT 59.864 47.619 0.37 0.00 45.05 5.68
2400 2521 1.134551 CCAACCATTTTTATGGCCCCG 60.135 52.381 0.00 0.00 45.47 5.73
2420 2541 8.934507 ATAGCTATTCTTCTTGTACAACACTC 57.065 34.615 3.59 0.00 0.00 3.51
2441 2562 4.143009 GGCGCTGAAGAAAATAGCTATAGC 60.143 45.833 17.33 17.33 42.49 2.97
2442 2563 4.991056 TGGCGCTGAAGAAAATAGCTATAG 59.009 41.667 7.64 0.00 35.36 1.31
2443 2564 4.750098 GTGGCGCTGAAGAAAATAGCTATA 59.250 41.667 7.64 0.00 35.36 1.31
2444 2565 3.561725 GTGGCGCTGAAGAAAATAGCTAT 59.438 43.478 7.64 0.00 35.36 2.97
2445 2566 2.936498 GTGGCGCTGAAGAAAATAGCTA 59.064 45.455 7.64 0.00 35.36 3.32
2446 2567 1.740025 GTGGCGCTGAAGAAAATAGCT 59.260 47.619 7.64 0.00 35.36 3.32
2473 2594 6.660521 TCCAATGTACTTCATCAGCTGATTTT 59.339 34.615 26.70 12.95 35.48 1.82
2474 2595 6.182627 TCCAATGTACTTCATCAGCTGATTT 58.817 36.000 26.70 12.84 35.48 2.17
2480 2601 5.357878 TCCAAATCCAATGTACTTCATCAGC 59.642 40.000 0.00 0.00 35.48 4.26
2542 2663 3.125656 TCTGGGGATCAATGGAGTGATT 58.874 45.455 0.00 0.00 38.38 2.57
2543 2664 2.709934 CTCTGGGGATCAATGGAGTGAT 59.290 50.000 0.00 0.00 41.01 3.06
2621 2742 3.286751 GGCAAGACCGCTGTGCAA 61.287 61.111 0.00 0.00 40.12 4.08
2652 2773 0.583438 GTATACACATGCTGCAGGCG 59.417 55.000 17.12 7.57 45.43 5.52
2702 2830 4.088634 ACTCCATTTTGCAGCCAATTCTA 58.911 39.130 0.00 0.00 0.00 2.10
2703 2831 2.901839 ACTCCATTTTGCAGCCAATTCT 59.098 40.909 0.00 0.00 0.00 2.40
2704 2832 3.323751 ACTCCATTTTGCAGCCAATTC 57.676 42.857 0.00 0.00 0.00 2.17
2705 2833 4.888326 TTACTCCATTTTGCAGCCAATT 57.112 36.364 0.00 0.00 0.00 2.32
2706 2834 5.425196 AATTACTCCATTTTGCAGCCAAT 57.575 34.783 0.00 0.00 0.00 3.16
2707 2835 4.888326 AATTACTCCATTTTGCAGCCAA 57.112 36.364 0.00 0.00 0.00 4.52
2708 2836 4.888326 AAATTACTCCATTTTGCAGCCA 57.112 36.364 0.00 0.00 0.00 4.75
2733 2861 8.567948 CACAAAAGGAAAGTACATACAGTCATT 58.432 33.333 0.00 0.00 0.00 2.57
2734 2862 7.719633 ACACAAAAGGAAAGTACATACAGTCAT 59.280 33.333 0.00 0.00 0.00 3.06
2735 2863 7.051623 ACACAAAAGGAAAGTACATACAGTCA 58.948 34.615 0.00 0.00 0.00 3.41
2736 2864 7.492352 ACACAAAAGGAAAGTACATACAGTC 57.508 36.000 0.00 0.00 0.00 3.51
2739 2867 9.158233 GCTATACACAAAAGGAAAGTACATACA 57.842 33.333 0.00 0.00 0.00 2.29
2740 2868 9.158233 TGCTATACACAAAAGGAAAGTACATAC 57.842 33.333 0.00 0.00 0.00 2.39
2741 2869 9.727859 TTGCTATACACAAAAGGAAAGTACATA 57.272 29.630 0.00 0.00 0.00 2.29
2742 2870 8.630054 TTGCTATACACAAAAGGAAAGTACAT 57.370 30.769 0.00 0.00 0.00 2.29
2765 2893 3.969117 TTACTTGTGCTTGTGCTCTTG 57.031 42.857 0.00 0.00 40.48 3.02
2766 2894 4.981806 TTTTACTTGTGCTTGTGCTCTT 57.018 36.364 0.00 0.00 40.48 2.85
2826 2960 0.886490 AAAAGAGAGGCCGTGCAGTG 60.886 55.000 0.00 0.00 0.00 3.66
2854 2988 6.636705 TCCTACTTTGAGTTGCGTATAATGT 58.363 36.000 0.00 0.00 0.00 2.71
2862 3002 4.307432 TCTTTCTCCTACTTTGAGTTGCG 58.693 43.478 0.00 0.00 0.00 4.85
2875 3015 3.589288 AGGCTGTTAACCATCTTTCTCCT 59.411 43.478 2.48 0.00 0.00 3.69
2953 3107 6.578944 TCAAACAAAGAACTCTGCTGTACTA 58.421 36.000 0.00 0.00 0.00 1.82
2970 3124 7.271511 AGTGTTGCCAAAATTCTATCAAACAA 58.728 30.769 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.