Multiple sequence alignment - TraesCS7A01G356500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G356500 chr7A 100.000 3873 0 0 1 3873 521964627 521960755 0.000000e+00 7153.0
1 TraesCS7A01G356500 chr7A 85.042 1317 125 25 1567 2852 711455800 711457075 0.000000e+00 1275.0
2 TraesCS7A01G356500 chr7A 98.201 278 5 0 375 652 696328262 696328539 1.620000e-133 486.0
3 TraesCS7A01G356500 chr7A 96.194 289 9 2 373 659 8801857 8801569 4.530000e-129 472.0
4 TraesCS7A01G356500 chr7A 99.412 170 1 0 3281 3450 47626467 47626298 3.760000e-80 309.0
5 TraesCS7A01G356500 chr7A 88.208 212 24 1 1269 1479 711455552 711455763 6.420000e-63 252.0
6 TraesCS7A01G356500 chr7A 78.261 115 24 1 3538 3652 485515527 485515640 5.370000e-09 73.1
7 TraesCS7A01G356500 chr2A 97.624 2652 44 9 649 3285 734546950 734544303 0.000000e+00 4530.0
8 TraesCS7A01G356500 chr2A 93.488 430 22 5 3446 3873 734544304 734543879 5.460000e-178 634.0
9 TraesCS7A01G356500 chr2A 98.201 278 5 0 373 650 722516002 722516279 1.620000e-133 486.0
10 TraesCS7A01G356500 chr2A 79.634 383 52 14 1309 1690 279482221 279481864 6.420000e-63 252.0
11 TraesCS7A01G356500 chr3A 97.543 2645 58 5 645 3285 586769912 586772553 0.000000e+00 4518.0
12 TraesCS7A01G356500 chr3A 94.860 428 16 3 3446 3873 586772552 586772973 0.000000e+00 664.0
13 TraesCS7A01G356500 chr3A 97.251 291 8 0 361 651 361973014 361973304 9.670000e-136 494.0
14 TraesCS7A01G356500 chr3A 96.226 53 2 0 323 375 586769865 586769917 1.920000e-13 87.9
15 TraesCS7A01G356500 chr7D 94.878 1757 60 13 991 2724 55090729 55088980 0.000000e+00 2719.0
16 TraesCS7A01G356500 chr7D 87.657 478 36 10 1860 2327 589405612 589406076 5.700000e-148 534.0
17 TraesCS7A01G356500 chr7D 93.396 318 18 2 653 970 55190807 55190493 5.860000e-128 468.0
18 TraesCS7A01G356500 chr7D 89.655 348 24 6 2350 2687 589407897 589408242 2.140000e-117 433.0
19 TraesCS7A01G356500 chr7D 90.417 240 22 1 1267 1506 589446904 589446666 8.080000e-82 315.0
20 TraesCS7A01G356500 chr7D 79.372 223 20 9 1558 1780 589405389 589405585 2.430000e-27 134.0
21 TraesCS7A01G356500 chr7D 98.148 54 1 0 323 376 55190856 55190803 1.150000e-15 95.3
22 TraesCS7A01G356500 chr7D 100.000 28 0 0 1824 1851 589405593 589405620 7.000000e-03 52.8
23 TraesCS7A01G356500 chr6B 96.591 1056 29 6 2233 3285 221732573 221733624 0.000000e+00 1744.0
24 TraesCS7A01G356500 chr6B 96.187 918 33 1 650 1567 221730968 221731883 0.000000e+00 1500.0
25 TraesCS7A01G356500 chr6B 98.703 617 8 0 1564 2180 221731960 221732576 0.000000e+00 1096.0
26 TraesCS7A01G356500 chr6B 98.851 174 1 1 3446 3619 221733623 221733795 3.760000e-80 309.0
27 TraesCS7A01G356500 chr6B 96.196 184 3 2 3280 3462 689928072 689927892 8.130000e-77 298.0
28 TraesCS7A01G356500 chr6B 80.874 183 25 3 683 857 702585813 702585633 6.750000e-28 135.0
29 TraesCS7A01G356500 chr6B 96.226 53 2 0 323 375 221730919 221730971 1.920000e-13 87.9
30 TraesCS7A01G356500 chr4D 84.062 1625 180 48 1558 3148 255532460 255530881 0.000000e+00 1493.0
31 TraesCS7A01G356500 chr4D 79.957 469 59 28 3086 3539 255530869 255530421 2.910000e-81 313.0
32 TraesCS7A01G356500 chr4A 98.925 279 3 0 373 651 445072747 445073025 2.080000e-137 499.0
33 TraesCS7A01G356500 chr4A 98.824 170 2 0 3283 3452 464567599 464567430 1.750000e-78 303.0
34 TraesCS7A01G356500 chr4A 94.709 189 8 2 3261 3448 632723548 632723735 3.780000e-75 292.0
35 TraesCS7A01G356500 chr4A 79.573 328 54 7 1266 1580 605121733 605122060 5.040000e-54 222.0
36 TraesCS7A01G356500 chr1A 96.656 299 8 2 371 668 481919851 481919554 2.690000e-136 496.0
37 TraesCS7A01G356500 chr1A 97.810 274 6 0 375 648 53022264 53021991 1.260000e-129 473.0
38 TraesCS7A01G356500 chr1A 98.256 172 3 0 3279 3450 368368487 368368658 6.290000e-78 302.0
39 TraesCS7A01G356500 chr1A 79.573 328 54 7 1266 1580 350012372 350012699 5.040000e-54 222.0
40 TraesCS7A01G356500 chr1B 96.763 278 9 0 373 650 547278947 547278670 7.580000e-127 464.0
41 TraesCS7A01G356500 chr1B 84.719 445 55 8 2383 2821 46158228 46158665 2.140000e-117 433.0
42 TraesCS7A01G356500 chr1B 87.324 213 21 4 2071 2279 46158004 46158214 5.000000e-59 239.0
43 TraesCS7A01G356500 chr6A 97.080 274 8 0 375 648 559205443 559205716 2.730000e-126 462.0
44 TraesCS7A01G356500 chr6A 98.256 172 3 0 3276 3447 1830024 1829853 6.290000e-78 302.0
45 TraesCS7A01G356500 chr6A 77.320 194 33 7 1053 1240 481045431 481045619 1.900000e-18 104.0
46 TraesCS7A01G356500 chr5B 98.256 172 3 0 3283 3454 656244964 656245135 6.290000e-78 302.0
47 TraesCS7A01G356500 chr3B 97.674 172 4 0 3279 3450 548082609 548082438 2.930000e-76 296.0
48 TraesCS7A01G356500 chr3B 97.143 175 4 1 3281 3455 642864788 642864961 1.050000e-75 294.0
49 TraesCS7A01G356500 chr3B 84.795 171 15 5 1915 2074 634450510 634450680 1.110000e-35 161.0
50 TraesCS7A01G356500 chr3B 82.456 171 19 6 1915 2074 634473152 634473322 5.220000e-29 139.0
51 TraesCS7A01G356500 chr5A 80.418 383 49 9 1309 1690 200869691 200870048 6.380000e-68 268.0
52 TraesCS7A01G356500 chr4B 79.573 328 54 7 1266 1580 373545100 373545427 5.040000e-54 222.0
53 TraesCS7A01G356500 chr4B 85.938 64 9 0 3590 3653 566590995 566590932 6.940000e-08 69.4
54 TraesCS7A01G356500 chrUn 80.812 271 33 9 685 951 72895088 72895343 1.100000e-45 195.0
55 TraesCS7A01G356500 chr6D 85.315 143 15 4 2385 2525 413000533 413000671 4.030000e-30 143.0
56 TraesCS7A01G356500 chr2D 82.857 105 16 2 3550 3653 616934819 616934716 4.120000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G356500 chr7A 521960755 521964627 3872 True 7153.000000 7153 100.000000 1 3873 1 chr7A.!!$R3 3872
1 TraesCS7A01G356500 chr7A 711455552 711457075 1523 False 763.500000 1275 86.625000 1269 2852 2 chr7A.!!$F3 1583
2 TraesCS7A01G356500 chr2A 734543879 734546950 3071 True 2582.000000 4530 95.556000 649 3873 2 chr2A.!!$R2 3224
3 TraesCS7A01G356500 chr3A 586769865 586772973 3108 False 1756.633333 4518 96.209667 323 3873 3 chr3A.!!$F2 3550
4 TraesCS7A01G356500 chr7D 55088980 55090729 1749 True 2719.000000 2719 94.878000 991 2724 1 chr7D.!!$R1 1733
5 TraesCS7A01G356500 chr7D 589405389 589408242 2853 False 288.450000 534 89.171000 1558 2687 4 chr7D.!!$F1 1129
6 TraesCS7A01G356500 chr6B 221730919 221733795 2876 False 947.380000 1744 97.311600 323 3619 5 chr6B.!!$F1 3296
7 TraesCS7A01G356500 chr4D 255530421 255532460 2039 True 903.000000 1493 82.009500 1558 3539 2 chr4D.!!$R1 1981
8 TraesCS7A01G356500 chr1B 46158004 46158665 661 False 336.000000 433 86.021500 2071 2821 2 chr1B.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 0.107831 GCCGACCATAAGGGCATGTA 59.892 55.000 0.00 0.0 46.60 2.29 F
647 648 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.0 38.92 5.19 F
1422 1439 0.396435 ATGTTCCAAGCTGTCCGTGA 59.604 50.000 0.00 0.0 0.00 4.35 F
2468 4448 3.544684 TGCACACAGAGTTGTTCAAGAT 58.455 40.909 0.00 0.0 34.62 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 1439 0.394565 GCCTACTCTTCGGCCATCAT 59.605 55.000 2.24 0.0 40.43 2.45 R
2666 4661 3.848726 ACCATCAATTCGCAAAATCACC 58.151 40.909 0.00 0.0 0.00 4.02 R
2835 4835 0.036010 CTCATGCCTCCCTTGACGTT 60.036 55.000 0.00 0.0 0.00 3.99 R
3814 5897 1.078709 ACTCATTCGCATTGTCCACG 58.921 50.000 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.994851 TTTTTGCAACGTACAAACATTTTTC 57.005 28.000 14.27 0.00 36.77 2.29
36 37 6.952935 TTTGCAACGTACAAACATTTTTCT 57.047 29.167 11.45 0.00 32.27 2.52
37 38 8.462143 TTTTGCAACGTACAAACATTTTTCTA 57.538 26.923 14.27 0.00 36.77 2.10
38 39 8.462143 TTTGCAACGTACAAACATTTTTCTAA 57.538 26.923 11.45 0.00 32.27 2.10
39 40 8.462143 TTGCAACGTACAAACATTTTTCTAAA 57.538 26.923 0.00 0.00 0.00 1.85
40 41 8.635877 TGCAACGTACAAACATTTTTCTAAAT 57.364 26.923 0.00 0.00 34.29 1.40
66 67 9.605955 TGTCACGAGTATTTATTTCAAAATGTG 57.394 29.630 0.00 0.00 31.63 3.21
67 68 9.061610 GTCACGAGTATTTATTTCAAAATGTGG 57.938 33.333 0.00 0.00 31.63 4.17
68 69 8.240682 TCACGAGTATTTATTTCAAAATGTGGG 58.759 33.333 0.00 0.00 31.63 4.61
69 70 8.240682 CACGAGTATTTATTTCAAAATGTGGGA 58.759 33.333 0.00 0.00 31.63 4.37
70 71 8.241367 ACGAGTATTTATTTCAAAATGTGGGAC 58.759 33.333 0.00 0.00 31.63 4.46
71 72 8.240682 CGAGTATTTATTTCAAAATGTGGGACA 58.759 33.333 0.00 0.00 31.63 4.02
115 116 9.567848 AAAATCGTACACATGATTAACATTTCC 57.432 29.630 0.00 0.00 39.08 3.13
116 117 8.506168 AATCGTACACATGATTAACATTTCCT 57.494 30.769 0.00 0.00 38.39 3.36
117 118 7.302350 TCGTACACATGATTAACATTTCCTG 57.698 36.000 0.00 0.00 37.07 3.86
118 119 5.965334 CGTACACATGATTAACATTTCCTGC 59.035 40.000 0.00 0.00 37.07 4.85
119 120 6.183360 CGTACACATGATTAACATTTCCTGCT 60.183 38.462 0.00 0.00 37.07 4.24
120 121 6.594788 ACACATGATTAACATTTCCTGCTT 57.405 33.333 0.00 0.00 37.07 3.91
121 122 6.996509 ACACATGATTAACATTTCCTGCTTT 58.003 32.000 0.00 0.00 37.07 3.51
122 123 7.444299 ACACATGATTAACATTTCCTGCTTTT 58.556 30.769 0.00 0.00 37.07 2.27
123 124 7.385752 ACACATGATTAACATTTCCTGCTTTTG 59.614 33.333 0.00 0.00 37.07 2.44
124 125 7.385752 CACATGATTAACATTTCCTGCTTTTGT 59.614 33.333 0.00 0.00 37.07 2.83
125 126 7.933033 ACATGATTAACATTTCCTGCTTTTGTT 59.067 29.630 0.00 0.00 37.07 2.83
126 127 7.712264 TGATTAACATTTCCTGCTTTTGTTG 57.288 32.000 0.00 0.00 33.03 3.33
127 128 7.495901 TGATTAACATTTCCTGCTTTTGTTGA 58.504 30.769 0.00 0.00 33.03 3.18
128 129 8.149647 TGATTAACATTTCCTGCTTTTGTTGAT 58.850 29.630 0.00 0.00 33.03 2.57
129 130 8.907222 ATTAACATTTCCTGCTTTTGTTGATT 57.093 26.923 0.00 0.00 33.03 2.57
130 131 6.849588 AACATTTCCTGCTTTTGTTGATTC 57.150 33.333 0.00 0.00 0.00 2.52
131 132 5.916318 ACATTTCCTGCTTTTGTTGATTCA 58.084 33.333 0.00 0.00 0.00 2.57
132 133 5.754890 ACATTTCCTGCTTTTGTTGATTCAC 59.245 36.000 0.00 0.00 0.00 3.18
133 134 3.624326 TCCTGCTTTTGTTGATTCACG 57.376 42.857 0.00 0.00 0.00 4.35
134 135 2.948979 TCCTGCTTTTGTTGATTCACGT 59.051 40.909 0.00 0.00 0.00 4.49
135 136 3.380004 TCCTGCTTTTGTTGATTCACGTT 59.620 39.130 0.00 0.00 0.00 3.99
136 137 3.486841 CCTGCTTTTGTTGATTCACGTTG 59.513 43.478 0.00 0.00 0.00 4.10
137 138 4.103365 TGCTTTTGTTGATTCACGTTGT 57.897 36.364 0.00 0.00 0.00 3.32
138 139 5.236655 TGCTTTTGTTGATTCACGTTGTA 57.763 34.783 0.00 0.00 0.00 2.41
139 140 5.031578 TGCTTTTGTTGATTCACGTTGTAC 58.968 37.500 0.00 0.00 0.00 2.90
140 141 5.031578 GCTTTTGTTGATTCACGTTGTACA 58.968 37.500 0.00 0.00 0.00 2.90
141 142 5.685511 GCTTTTGTTGATTCACGTTGTACAT 59.314 36.000 0.00 0.00 0.00 2.29
142 143 6.198216 GCTTTTGTTGATTCACGTTGTACATT 59.802 34.615 0.00 0.00 0.00 2.71
143 144 7.253950 GCTTTTGTTGATTCACGTTGTACATTT 60.254 33.333 0.00 0.00 0.00 2.32
144 145 8.467402 TTTTGTTGATTCACGTTGTACATTTT 57.533 26.923 0.00 0.00 0.00 1.82
145 146 8.467402 TTTGTTGATTCACGTTGTACATTTTT 57.533 26.923 0.00 0.00 0.00 1.94
146 147 7.672351 TGTTGATTCACGTTGTACATTTTTC 57.328 32.000 0.00 0.00 0.00 2.29
147 148 6.412362 TGTTGATTCACGTTGTACATTTTTCG 59.588 34.615 0.00 0.20 0.00 3.46
148 149 6.050454 TGATTCACGTTGTACATTTTTCGT 57.950 33.333 0.00 0.83 0.00 3.85
149 150 7.175073 TGATTCACGTTGTACATTTTTCGTA 57.825 32.000 0.00 0.00 0.00 3.43
150 151 7.798801 TGATTCACGTTGTACATTTTTCGTAT 58.201 30.769 0.00 0.00 0.00 3.06
151 152 8.923683 TGATTCACGTTGTACATTTTTCGTATA 58.076 29.630 0.00 0.00 0.00 1.47
152 153 9.191376 GATTCACGTTGTACATTTTTCGTATAC 57.809 33.333 0.00 0.00 0.00 1.47
153 154 7.634809 TCACGTTGTACATTTTTCGTATACA 57.365 32.000 3.32 0.00 0.00 2.29
154 155 8.242085 TCACGTTGTACATTTTTCGTATACAT 57.758 30.769 3.32 0.00 0.00 2.29
155 156 8.710551 TCACGTTGTACATTTTTCGTATACATT 58.289 29.630 3.32 0.00 0.00 2.71
156 157 9.955310 CACGTTGTACATTTTTCGTATACATTA 57.045 29.630 3.32 0.00 0.00 1.90
157 158 9.956797 ACGTTGTACATTTTTCGTATACATTAC 57.043 29.630 3.32 0.00 0.00 1.89
158 159 9.955310 CGTTGTACATTTTTCGTATACATTACA 57.045 29.630 3.32 0.00 0.00 2.41
316 317 8.608844 AATTCTCTCCCTAATAATAAAGCACG 57.391 34.615 0.00 0.00 0.00 5.34
317 318 6.097915 TCTCTCCCTAATAATAAAGCACGG 57.902 41.667 0.00 0.00 0.00 4.94
318 319 5.836898 TCTCTCCCTAATAATAAAGCACGGA 59.163 40.000 0.00 0.00 0.00 4.69
319 320 6.497259 TCTCTCCCTAATAATAAAGCACGGAT 59.503 38.462 0.00 0.00 0.00 4.18
320 321 7.016268 TCTCTCCCTAATAATAAAGCACGGATT 59.984 37.037 0.00 0.00 0.00 3.01
321 322 6.934645 TCTCCCTAATAATAAAGCACGGATTG 59.065 38.462 0.00 0.00 0.00 2.67
351 352 9.346005 CCTTAAGTATTATGGAAATAAACCCGT 57.654 33.333 0.97 0.00 45.84 5.28
371 372 1.105167 CGTCCACTATAGGCCGACCA 61.105 60.000 4.43 0.00 39.06 4.02
372 373 1.339097 GTCCACTATAGGCCGACCAT 58.661 55.000 4.43 0.00 39.06 3.55
373 374 2.522185 GTCCACTATAGGCCGACCATA 58.478 52.381 4.43 0.00 39.06 2.74
374 375 2.895404 GTCCACTATAGGCCGACCATAA 59.105 50.000 4.43 0.00 39.06 1.90
375 376 3.056749 GTCCACTATAGGCCGACCATAAG 60.057 52.174 4.43 0.00 39.06 1.73
376 377 2.233922 CCACTATAGGCCGACCATAAGG 59.766 54.545 4.43 0.00 39.06 2.69
377 378 2.233922 CACTATAGGCCGACCATAAGGG 59.766 54.545 4.43 0.00 44.81 3.95
380 381 2.515901 GGCCGACCATAAGGGCAT 59.484 61.111 3.49 0.00 46.60 4.40
381 382 1.898574 GGCCGACCATAAGGGCATG 60.899 63.158 3.49 0.00 46.60 4.06
382 383 1.152963 GCCGACCATAAGGGCATGT 60.153 57.895 0.00 0.00 46.60 3.21
383 384 0.107831 GCCGACCATAAGGGCATGTA 59.892 55.000 0.00 0.00 46.60 2.29
384 385 1.878953 CCGACCATAAGGGCATGTAC 58.121 55.000 0.00 0.00 46.60 2.90
385 386 1.140052 CCGACCATAAGGGCATGTACA 59.860 52.381 0.00 0.00 46.60 2.90
386 387 2.420827 CCGACCATAAGGGCATGTACAA 60.421 50.000 0.00 0.00 46.60 2.41
387 388 3.476552 CGACCATAAGGGCATGTACAAT 58.523 45.455 0.00 0.00 46.60 2.71
388 389 3.250762 CGACCATAAGGGCATGTACAATG 59.749 47.826 0.00 0.12 46.60 2.82
389 390 3.565307 ACCATAAGGGCATGTACAATGG 58.435 45.455 15.74 15.74 42.05 3.16
390 391 3.052944 ACCATAAGGGCATGTACAATGGT 60.053 43.478 16.82 16.82 40.51 3.55
391 392 3.960102 CCATAAGGGCATGTACAATGGTT 59.040 43.478 10.95 0.71 0.00 3.67
392 393 4.202141 CCATAAGGGCATGTACAATGGTTG 60.202 45.833 10.95 1.39 0.00 3.77
393 394 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
394 395 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
395 396 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
396 397 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
397 398 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
398 399 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
399 400 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
400 401 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
401 402 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
402 403 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
403 404 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
404 405 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
460 461 9.308000 TGATAAAGAAAAATGTCTACAATGGGT 57.692 29.630 0.00 0.00 0.00 4.51
461 462 9.788960 GATAAAGAAAAATGTCTACAATGGGTC 57.211 33.333 0.00 0.00 0.00 4.46
462 463 7.595819 AAAGAAAAATGTCTACAATGGGTCA 57.404 32.000 0.00 0.00 0.00 4.02
463 464 7.781324 AAGAAAAATGTCTACAATGGGTCAT 57.219 32.000 0.00 0.00 0.00 3.06
464 465 7.396540 AGAAAAATGTCTACAATGGGTCATC 57.603 36.000 0.00 0.00 0.00 2.92
465 466 7.177878 AGAAAAATGTCTACAATGGGTCATCT 58.822 34.615 0.00 0.00 0.00 2.90
466 467 7.337942 AGAAAAATGTCTACAATGGGTCATCTC 59.662 37.037 0.00 0.00 0.00 2.75
467 468 5.965033 AATGTCTACAATGGGTCATCTCT 57.035 39.130 0.00 0.00 0.00 3.10
468 469 5.965033 ATGTCTACAATGGGTCATCTCTT 57.035 39.130 0.00 0.00 0.00 2.85
469 470 7.437713 AATGTCTACAATGGGTCATCTCTTA 57.562 36.000 0.00 0.00 0.00 2.10
470 471 6.471233 TGTCTACAATGGGTCATCTCTTAG 57.529 41.667 0.00 0.00 0.00 2.18
471 472 5.958380 TGTCTACAATGGGTCATCTCTTAGT 59.042 40.000 0.00 0.00 0.00 2.24
472 473 6.096987 TGTCTACAATGGGTCATCTCTTAGTC 59.903 42.308 0.00 0.00 0.00 2.59
473 474 6.322712 GTCTACAATGGGTCATCTCTTAGTCT 59.677 42.308 0.00 0.00 0.00 3.24
474 475 6.897966 TCTACAATGGGTCATCTCTTAGTCTT 59.102 38.462 0.00 0.00 0.00 3.01
475 476 8.059461 TCTACAATGGGTCATCTCTTAGTCTTA 58.941 37.037 0.00 0.00 0.00 2.10
476 477 7.682787 ACAATGGGTCATCTCTTAGTCTTAT 57.317 36.000 0.00 0.00 0.00 1.73
477 478 7.731054 ACAATGGGTCATCTCTTAGTCTTATC 58.269 38.462 0.00 0.00 0.00 1.75
478 479 7.566879 ACAATGGGTCATCTCTTAGTCTTATCT 59.433 37.037 0.00 0.00 0.00 1.98
479 480 8.428063 CAATGGGTCATCTCTTAGTCTTATCTT 58.572 37.037 0.00 0.00 0.00 2.40
480 481 7.353414 TGGGTCATCTCTTAGTCTTATCTTG 57.647 40.000 0.00 0.00 0.00 3.02
481 482 7.126061 TGGGTCATCTCTTAGTCTTATCTTGA 58.874 38.462 0.00 0.00 0.00 3.02
482 483 7.619698 TGGGTCATCTCTTAGTCTTATCTTGAA 59.380 37.037 0.00 0.00 0.00 2.69
483 484 8.646900 GGGTCATCTCTTAGTCTTATCTTGAAT 58.353 37.037 0.00 0.00 0.00 2.57
508 509 7.539034 AACTAGCAATTCCTAAAAATGTGGT 57.461 32.000 0.00 0.00 0.00 4.16
509 510 6.924111 ACTAGCAATTCCTAAAAATGTGGTG 58.076 36.000 0.00 0.00 0.00 4.17
510 511 6.719370 ACTAGCAATTCCTAAAAATGTGGTGA 59.281 34.615 0.00 0.00 0.00 4.02
511 512 6.029346 AGCAATTCCTAAAAATGTGGTGAG 57.971 37.500 0.00 0.00 0.00 3.51
512 513 5.774690 AGCAATTCCTAAAAATGTGGTGAGA 59.225 36.000 0.00 0.00 0.00 3.27
513 514 5.863935 GCAATTCCTAAAAATGTGGTGAGAC 59.136 40.000 0.00 0.00 0.00 3.36
514 515 6.516527 GCAATTCCTAAAAATGTGGTGAGACA 60.517 38.462 0.00 0.00 0.00 3.41
515 516 7.605449 CAATTCCTAAAAATGTGGTGAGACAT 58.395 34.615 0.00 0.00 38.23 3.06
516 517 8.739039 CAATTCCTAAAAATGTGGTGAGACATA 58.261 33.333 0.00 0.00 35.43 2.29
517 518 9.479549 AATTCCTAAAAATGTGGTGAGACATAT 57.520 29.630 0.00 0.00 35.43 1.78
518 519 8.877864 TTCCTAAAAATGTGGTGAGACATATT 57.122 30.769 0.00 0.00 35.43 1.28
519 520 8.279970 TCCTAAAAATGTGGTGAGACATATTG 57.720 34.615 0.00 0.00 35.43 1.90
520 521 7.888021 TCCTAAAAATGTGGTGAGACATATTGT 59.112 33.333 0.00 0.00 35.43 2.71
521 522 7.970061 CCTAAAAATGTGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 35.43 3.33
522 523 4.970662 AATGTGGTGAGACATATTGTGC 57.029 40.909 0.00 0.00 35.43 4.57
523 524 3.701205 TGTGGTGAGACATATTGTGCT 57.299 42.857 0.00 0.00 0.00 4.40
524 525 4.817318 TGTGGTGAGACATATTGTGCTA 57.183 40.909 0.00 0.00 0.00 3.49
525 526 5.159273 TGTGGTGAGACATATTGTGCTAA 57.841 39.130 0.00 0.00 0.00 3.09
526 527 5.178061 TGTGGTGAGACATATTGTGCTAAG 58.822 41.667 0.00 0.00 0.00 2.18
527 528 5.046663 TGTGGTGAGACATATTGTGCTAAGA 60.047 40.000 0.00 0.00 0.00 2.10
528 529 5.521735 GTGGTGAGACATATTGTGCTAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
529 530 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
530 531 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
531 532 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
532 533 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
533 534 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
534 535 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
535 536 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
536 537 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
570 571 8.779354 TCTTAAATAAGAGAAGACAAGCCTTC 57.221 34.615 0.00 0.00 37.40 3.46
580 581 5.729510 GAAGACAAGCCTTCTCTTATGAGT 58.270 41.667 5.60 0.00 40.98 3.41
581 582 5.753721 AGACAAGCCTTCTCTTATGAGTT 57.246 39.130 5.60 0.00 40.98 3.01
582 583 5.729510 AGACAAGCCTTCTCTTATGAGTTC 58.270 41.667 5.60 0.00 40.98 3.01
583 584 5.483583 AGACAAGCCTTCTCTTATGAGTTCT 59.516 40.000 5.60 0.00 40.98 3.01
584 585 5.729510 ACAAGCCTTCTCTTATGAGTTCTC 58.270 41.667 5.60 0.00 40.98 2.87
585 586 5.483583 ACAAGCCTTCTCTTATGAGTTCTCT 59.516 40.000 5.60 0.00 40.98 3.10
586 587 5.852282 AGCCTTCTCTTATGAGTTCTCTC 57.148 43.478 5.60 0.00 40.98 3.20
587 588 5.518865 AGCCTTCTCTTATGAGTTCTCTCT 58.481 41.667 5.60 0.00 40.98 3.10
588 589 5.594317 AGCCTTCTCTTATGAGTTCTCTCTC 59.406 44.000 5.60 0.00 40.98 3.20
589 590 5.221244 GCCTTCTCTTATGAGTTCTCTCTCC 60.221 48.000 5.60 0.00 40.98 3.71
590 591 6.129179 CCTTCTCTTATGAGTTCTCTCTCCT 58.871 44.000 5.60 0.00 40.98 3.69
591 592 6.263168 CCTTCTCTTATGAGTTCTCTCTCCTC 59.737 46.154 5.60 0.00 40.98 3.71
592 593 5.690865 TCTCTTATGAGTTCTCTCTCCTCC 58.309 45.833 5.60 0.00 40.98 4.30
593 594 5.192722 TCTCTTATGAGTTCTCTCTCCTCCA 59.807 44.000 5.60 0.00 40.98 3.86
594 595 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
595 596 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
596 597 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
597 598 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
598 599 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
599 600 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
600 601 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
601 602 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
602 603 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
603 604 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
604 605 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
605 606 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
606 607 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
607 608 5.541868 TCTCTCCTCCACCTCATCATTTATC 59.458 44.000 0.00 0.00 0.00 1.75
608 609 4.594920 TCTCCTCCACCTCATCATTTATCC 59.405 45.833 0.00 0.00 0.00 2.59
609 610 3.652869 TCCTCCACCTCATCATTTATCCC 59.347 47.826 0.00 0.00 0.00 3.85
610 611 3.395607 CCTCCACCTCATCATTTATCCCA 59.604 47.826 0.00 0.00 0.00 4.37
611 612 4.392940 CTCCACCTCATCATTTATCCCAC 58.607 47.826 0.00 0.00 0.00 4.61
612 613 3.141398 CCACCTCATCATTTATCCCACG 58.859 50.000 0.00 0.00 0.00 4.94
613 614 3.433598 CCACCTCATCATTTATCCCACGT 60.434 47.826 0.00 0.00 0.00 4.49
614 615 3.561310 CACCTCATCATTTATCCCACGTG 59.439 47.826 9.08 9.08 0.00 4.49
615 616 3.454447 ACCTCATCATTTATCCCACGTGA 59.546 43.478 19.30 0.00 0.00 4.35
616 617 3.809832 CCTCATCATTTATCCCACGTGAC 59.190 47.826 19.30 0.00 0.00 3.67
617 618 4.441792 CTCATCATTTATCCCACGTGACA 58.558 43.478 19.30 2.49 0.00 3.58
618 619 4.188462 TCATCATTTATCCCACGTGACAC 58.812 43.478 19.30 0.00 0.00 3.67
619 620 3.973206 TCATTTATCCCACGTGACACT 57.027 42.857 19.30 0.94 0.00 3.55
620 621 4.280436 TCATTTATCCCACGTGACACTT 57.720 40.909 19.30 0.00 0.00 3.16
621 622 4.250464 TCATTTATCCCACGTGACACTTC 58.750 43.478 19.30 0.00 0.00 3.01
622 623 4.020573 TCATTTATCCCACGTGACACTTCT 60.021 41.667 19.30 0.00 0.00 2.85
623 624 5.186215 TCATTTATCCCACGTGACACTTCTA 59.814 40.000 19.30 0.00 0.00 2.10
624 625 5.471556 TTTATCCCACGTGACACTTCTAA 57.528 39.130 19.30 2.25 0.00 2.10
625 626 3.594603 ATCCCACGTGACACTTCTAAG 57.405 47.619 19.30 0.00 0.00 2.18
626 627 2.589720 TCCCACGTGACACTTCTAAGA 58.410 47.619 19.30 0.00 0.00 2.10
627 628 3.162666 TCCCACGTGACACTTCTAAGAT 58.837 45.455 19.30 0.00 0.00 2.40
628 629 4.338012 TCCCACGTGACACTTCTAAGATA 58.662 43.478 19.30 0.00 0.00 1.98
629 630 4.398358 TCCCACGTGACACTTCTAAGATAG 59.602 45.833 19.30 0.00 0.00 2.08
630 631 4.106197 CCACGTGACACTTCTAAGATAGC 58.894 47.826 19.30 0.00 0.00 2.97
631 632 4.380550 CCACGTGACACTTCTAAGATAGCA 60.381 45.833 19.30 0.00 0.00 3.49
632 633 4.559251 CACGTGACACTTCTAAGATAGCAC 59.441 45.833 10.90 0.00 0.00 4.40
633 634 4.106197 CGTGACACTTCTAAGATAGCACC 58.894 47.826 3.68 0.00 0.00 5.01
634 635 4.380550 CGTGACACTTCTAAGATAGCACCA 60.381 45.833 3.68 0.00 0.00 4.17
635 636 5.665459 GTGACACTTCTAAGATAGCACCAT 58.335 41.667 0.00 0.00 0.00 3.55
636 637 6.109359 GTGACACTTCTAAGATAGCACCATT 58.891 40.000 0.00 0.00 0.00 3.16
637 638 6.036517 GTGACACTTCTAAGATAGCACCATTG 59.963 42.308 0.00 0.00 0.00 2.82
638 639 6.054860 ACACTTCTAAGATAGCACCATTGT 57.945 37.500 0.00 0.00 0.00 2.71
639 640 7.093509 TGACACTTCTAAGATAGCACCATTGTA 60.094 37.037 0.00 0.00 0.00 2.41
640 641 7.042335 ACACTTCTAAGATAGCACCATTGTAC 58.958 38.462 0.00 0.00 0.00 2.90
641 642 7.041721 CACTTCTAAGATAGCACCATTGTACA 58.958 38.462 0.00 0.00 0.00 2.90
642 643 7.712639 CACTTCTAAGATAGCACCATTGTACAT 59.287 37.037 0.00 0.00 0.00 2.29
643 644 7.712639 ACTTCTAAGATAGCACCATTGTACATG 59.287 37.037 0.00 0.00 0.00 3.21
644 645 5.991606 TCTAAGATAGCACCATTGTACATGC 59.008 40.000 10.53 10.53 38.39 4.06
645 646 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
646 647 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
647 648 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
659 660 9.283768 CATTGTACATGCCCTAATAATAAGTGA 57.716 33.333 0.00 0.00 0.00 3.41
660 661 9.860650 ATTGTACATGCCCTAATAATAAGTGAA 57.139 29.630 0.00 0.00 0.00 3.18
829 832 3.760035 CGCGCTCTACCCACCACT 61.760 66.667 5.56 0.00 0.00 4.00
977 980 4.969196 CGTGTGCGGCCACTCTGT 62.969 66.667 2.24 0.00 42.54 3.41
1028 1031 4.344865 GCCACCGGCTCAAAGGGA 62.345 66.667 0.00 0.00 46.69 4.20
1031 1034 1.228124 CACCGGCTCAAAGGGAACA 60.228 57.895 0.00 0.00 0.00 3.18
1422 1439 0.396435 ATGTTCCAAGCTGTCCGTGA 59.604 50.000 0.00 0.00 0.00 4.35
1781 1881 4.620589 TCCCGTGTAGTGTTAAATTCCA 57.379 40.909 0.00 0.00 0.00 3.53
2468 4448 3.544684 TGCACACAGAGTTGTTCAAGAT 58.455 40.909 0.00 0.00 34.62 2.40
2469 4449 3.947196 TGCACACAGAGTTGTTCAAGATT 59.053 39.130 0.00 0.00 34.62 2.40
2706 4703 6.535150 TGATGGTTGAACTGAATACTTCGATC 59.465 38.462 0.00 0.00 0.00 3.69
2835 4835 2.813907 CTTGACTGAAGGAGGAGGAGA 58.186 52.381 0.00 0.00 0.00 3.71
2889 4892 1.519234 GAGCCATCACGACGCATCA 60.519 57.895 0.00 0.00 0.00 3.07
2891 4894 2.813179 GCCATCACGACGCATCACC 61.813 63.158 0.00 0.00 0.00 4.02
3032 5037 1.468520 CGGTGCTAATTTCCTGTGTGG 59.531 52.381 0.00 0.00 37.10 4.17
3304 5384 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
3305 5385 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3306 5386 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3309 5389 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3313 5393 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3317 5397 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3318 5398 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
3325 5405 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3326 5406 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3328 5408 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3330 5410 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
3331 5411 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
3334 5414 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
3344 5424 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
3345 5425 5.224888 TCAACAAGTGACTACATACGGAAC 58.775 41.667 0.00 0.00 0.00 3.62
3346 5426 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
3348 5428 5.603596 ACAAGTGACTACATACGGAACAAA 58.396 37.500 0.00 0.00 0.00 2.83
3349 5429 6.050432 ACAAGTGACTACATACGGAACAAAA 58.950 36.000 0.00 0.00 0.00 2.44
3351 5431 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
3352 5432 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
3353 5433 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
3356 5436 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
3359 5439 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
3360 5440 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
3361 5441 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
3362 5442 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
3363 5443 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
3364 5444 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
3411 5491 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
3760 5843 4.928020 CAGACAGATGGATGGATAATGTCG 59.072 45.833 0.00 0.00 40.29 4.35
3767 5850 4.594970 TGGATGGATAATGTCGGTGTTTT 58.405 39.130 0.00 0.00 0.00 2.43
3772 5855 5.309638 TGGATAATGTCGGTGTTTTGAGAA 58.690 37.500 0.00 0.00 0.00 2.87
3774 5857 6.263392 TGGATAATGTCGGTGTTTTGAGAAAA 59.737 34.615 0.00 0.00 0.00 2.29
3855 5938 6.108015 AGTTTTGCTCACACAACATCAATTT 58.892 32.000 0.00 0.00 38.64 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.797819 AGAAAAATGTTTGTACGTTGCAAAAA 58.202 26.923 16.07 12.83 37.54 1.94
12 13 7.352719 AGAAAAATGTTTGTACGTTGCAAAA 57.647 28.000 16.07 9.53 37.54 2.44
13 14 6.952935 AGAAAAATGTTTGTACGTTGCAAA 57.047 29.167 0.00 12.07 33.82 3.68
14 15 8.462143 TTTAGAAAAATGTTTGTACGTTGCAA 57.538 26.923 0.00 0.00 33.82 4.08
15 16 8.535592 CATTTAGAAAAATGTTTGTACGTTGCA 58.464 29.630 0.00 0.00 44.62 4.08
16 17 8.897056 CATTTAGAAAAATGTTTGTACGTTGC 57.103 30.769 0.00 0.00 44.62 4.17
40 41 9.605955 CACATTTTGAAATAAATACTCGTGACA 57.394 29.630 0.00 0.00 0.00 3.58
41 42 9.061610 CCACATTTTGAAATAAATACTCGTGAC 57.938 33.333 0.00 0.00 0.00 3.67
42 43 8.240682 CCCACATTTTGAAATAAATACTCGTGA 58.759 33.333 0.00 0.00 0.00 4.35
43 44 8.240682 TCCCACATTTTGAAATAAATACTCGTG 58.759 33.333 0.00 0.00 0.00 4.35
44 45 8.241367 GTCCCACATTTTGAAATAAATACTCGT 58.759 33.333 0.00 0.00 0.00 4.18
45 46 8.240682 TGTCCCACATTTTGAAATAAATACTCG 58.759 33.333 0.00 0.00 0.00 4.18
89 90 9.567848 GGAAATGTTAATCATGTGTACGATTTT 57.432 29.630 0.00 0.00 36.81 1.82
90 91 8.956426 AGGAAATGTTAATCATGTGTACGATTT 58.044 29.630 0.00 0.00 36.81 2.17
91 92 8.397906 CAGGAAATGTTAATCATGTGTACGATT 58.602 33.333 0.00 0.00 36.81 3.34
92 93 7.467267 GCAGGAAATGTTAATCATGTGTACGAT 60.467 37.037 0.00 0.00 36.81 3.73
93 94 6.183360 GCAGGAAATGTTAATCATGTGTACGA 60.183 38.462 0.00 0.00 36.81 3.43
94 95 5.965334 GCAGGAAATGTTAATCATGTGTACG 59.035 40.000 0.00 0.00 36.81 3.67
95 96 7.088589 AGCAGGAAATGTTAATCATGTGTAC 57.911 36.000 0.00 0.00 36.81 2.90
96 97 7.701539 AAGCAGGAAATGTTAATCATGTGTA 57.298 32.000 0.00 0.00 36.81 2.90
97 98 6.594788 AAGCAGGAAATGTTAATCATGTGT 57.405 33.333 0.00 0.00 36.81 3.72
98 99 7.385752 ACAAAAGCAGGAAATGTTAATCATGTG 59.614 33.333 0.00 0.00 36.81 3.21
99 100 7.444299 ACAAAAGCAGGAAATGTTAATCATGT 58.556 30.769 0.00 0.00 36.81 3.21
100 101 7.894376 ACAAAAGCAGGAAATGTTAATCATG 57.106 32.000 0.00 0.00 36.81 3.07
101 102 8.149647 TCAACAAAAGCAGGAAATGTTAATCAT 58.850 29.630 0.00 0.00 38.57 2.45
102 103 7.495901 TCAACAAAAGCAGGAAATGTTAATCA 58.504 30.769 0.00 0.00 33.24 2.57
103 104 7.945033 TCAACAAAAGCAGGAAATGTTAATC 57.055 32.000 0.00 0.00 33.24 1.75
104 105 8.907222 AATCAACAAAAGCAGGAAATGTTAAT 57.093 26.923 0.00 0.00 33.24 1.40
105 106 7.984050 TGAATCAACAAAAGCAGGAAATGTTAA 59.016 29.630 0.00 0.00 33.24 2.01
106 107 7.437862 GTGAATCAACAAAAGCAGGAAATGTTA 59.562 33.333 0.00 0.00 33.24 2.41
107 108 6.258507 GTGAATCAACAAAAGCAGGAAATGTT 59.741 34.615 0.00 0.00 34.74 2.71
108 109 5.754890 GTGAATCAACAAAAGCAGGAAATGT 59.245 36.000 0.00 0.00 0.00 2.71
109 110 5.107760 CGTGAATCAACAAAAGCAGGAAATG 60.108 40.000 0.00 0.00 0.00 2.32
110 111 4.984161 CGTGAATCAACAAAAGCAGGAAAT 59.016 37.500 0.00 0.00 0.00 2.17
111 112 4.142271 ACGTGAATCAACAAAAGCAGGAAA 60.142 37.500 0.00 0.00 0.00 3.13
112 113 3.380004 ACGTGAATCAACAAAAGCAGGAA 59.620 39.130 0.00 0.00 0.00 3.36
113 114 2.948979 ACGTGAATCAACAAAAGCAGGA 59.051 40.909 0.00 0.00 0.00 3.86
114 115 3.354089 ACGTGAATCAACAAAAGCAGG 57.646 42.857 0.00 0.00 0.00 4.85
115 116 4.104776 ACAACGTGAATCAACAAAAGCAG 58.895 39.130 0.00 0.00 0.00 4.24
116 117 4.103365 ACAACGTGAATCAACAAAAGCA 57.897 36.364 0.00 0.00 0.00 3.91
117 118 5.031578 TGTACAACGTGAATCAACAAAAGC 58.968 37.500 0.00 0.00 0.00 3.51
118 119 7.678194 AATGTACAACGTGAATCAACAAAAG 57.322 32.000 0.00 0.00 0.00 2.27
119 120 8.467402 AAAATGTACAACGTGAATCAACAAAA 57.533 26.923 0.00 0.00 0.00 2.44
120 121 8.467402 AAAAATGTACAACGTGAATCAACAAA 57.533 26.923 0.00 0.00 0.00 2.83
121 122 7.044641 CGAAAAATGTACAACGTGAATCAACAA 60.045 33.333 0.00 0.00 0.00 2.83
122 123 6.412362 CGAAAAATGTACAACGTGAATCAACA 59.588 34.615 0.00 0.00 0.00 3.33
123 124 6.412653 ACGAAAAATGTACAACGTGAATCAAC 59.587 34.615 0.00 0.00 32.93 3.18
124 125 6.487960 ACGAAAAATGTACAACGTGAATCAA 58.512 32.000 0.00 0.00 32.93 2.57
125 126 6.050454 ACGAAAAATGTACAACGTGAATCA 57.950 33.333 0.00 0.00 32.93 2.57
126 127 9.191376 GTATACGAAAAATGTACAACGTGAATC 57.809 33.333 18.15 5.14 35.66 2.52
127 128 8.710551 TGTATACGAAAAATGTACAACGTGAAT 58.289 29.630 18.15 11.25 35.66 2.57
128 129 8.070007 TGTATACGAAAAATGTACAACGTGAA 57.930 30.769 18.15 8.81 35.66 3.18
129 130 7.634809 TGTATACGAAAAATGTACAACGTGA 57.365 32.000 18.15 8.92 35.66 4.35
130 131 8.868744 AATGTATACGAAAAATGTACAACGTG 57.131 30.769 18.15 4.47 35.66 4.49
131 132 9.956797 GTAATGTATACGAAAAATGTACAACGT 57.043 29.630 0.00 9.68 37.68 3.99
132 133 9.955310 TGTAATGTATACGAAAAATGTACAACG 57.045 29.630 0.00 4.11 29.00 4.10
290 291 9.057089 CGTGCTTTATTATTAGGGAGAGAATTT 57.943 33.333 0.00 0.00 0.00 1.82
291 292 7.661847 CCGTGCTTTATTATTAGGGAGAGAATT 59.338 37.037 0.00 0.00 0.00 2.17
292 293 7.016268 TCCGTGCTTTATTATTAGGGAGAGAAT 59.984 37.037 0.00 0.00 0.00 2.40
293 294 6.325545 TCCGTGCTTTATTATTAGGGAGAGAA 59.674 38.462 0.00 0.00 0.00 2.87
294 295 5.836898 TCCGTGCTTTATTATTAGGGAGAGA 59.163 40.000 0.00 0.00 0.00 3.10
295 296 6.097915 TCCGTGCTTTATTATTAGGGAGAG 57.902 41.667 0.00 0.00 0.00 3.20
296 297 6.681729 ATCCGTGCTTTATTATTAGGGAGA 57.318 37.500 0.00 0.00 0.00 3.71
297 298 6.934645 TCAATCCGTGCTTTATTATTAGGGAG 59.065 38.462 0.00 0.00 0.00 4.30
298 299 6.833041 TCAATCCGTGCTTTATTATTAGGGA 58.167 36.000 0.00 0.00 0.00 4.20
299 300 6.710744 ACTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
300 301 7.095187 GGACTCAATCCGTGCTTTATTATTAGG 60.095 40.741 0.00 0.00 37.88 2.69
301 302 7.797819 GGACTCAATCCGTGCTTTATTATTAG 58.202 38.462 0.00 0.00 37.88 1.73
302 303 7.724305 GGACTCAATCCGTGCTTTATTATTA 57.276 36.000 0.00 0.00 37.88 0.98
303 304 6.619801 GGACTCAATCCGTGCTTTATTATT 57.380 37.500 0.00 0.00 37.88 1.40
371 372 4.865905 TCAACCATTGTACATGCCCTTAT 58.134 39.130 0.00 0.00 0.00 1.73
372 373 4.308526 TCAACCATTGTACATGCCCTTA 57.691 40.909 0.00 0.00 0.00 2.69
373 374 3.168035 TCAACCATTGTACATGCCCTT 57.832 42.857 0.00 0.00 0.00 3.95
374 375 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
375 376 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
376 377 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
377 378 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
378 379 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
434 435 9.308000 ACCCATTGTAGACATTTTTCTTTATCA 57.692 29.630 0.00 0.00 0.00 2.15
435 436 9.788960 GACCCATTGTAGACATTTTTCTTTATC 57.211 33.333 0.00 0.00 0.00 1.75
436 437 9.308000 TGACCCATTGTAGACATTTTTCTTTAT 57.692 29.630 0.00 0.00 0.00 1.40
437 438 8.698973 TGACCCATTGTAGACATTTTTCTTTA 57.301 30.769 0.00 0.00 0.00 1.85
438 439 7.595819 TGACCCATTGTAGACATTTTTCTTT 57.404 32.000 0.00 0.00 0.00 2.52
439 440 7.671398 AGATGACCCATTGTAGACATTTTTCTT 59.329 33.333 0.00 0.00 0.00 2.52
440 441 7.177878 AGATGACCCATTGTAGACATTTTTCT 58.822 34.615 0.00 0.00 0.00 2.52
441 442 7.337942 AGAGATGACCCATTGTAGACATTTTTC 59.662 37.037 0.00 0.00 0.00 2.29
442 443 7.177878 AGAGATGACCCATTGTAGACATTTTT 58.822 34.615 0.00 0.00 0.00 1.94
443 444 6.725364 AGAGATGACCCATTGTAGACATTTT 58.275 36.000 0.00 0.00 0.00 1.82
444 445 6.319048 AGAGATGACCCATTGTAGACATTT 57.681 37.500 0.00 0.00 0.00 2.32
445 446 5.965033 AGAGATGACCCATTGTAGACATT 57.035 39.130 0.00 0.00 0.00 2.71
446 447 5.965033 AAGAGATGACCCATTGTAGACAT 57.035 39.130 0.00 0.00 0.00 3.06
447 448 5.958380 ACTAAGAGATGACCCATTGTAGACA 59.042 40.000 0.00 0.00 0.00 3.41
448 449 6.322712 AGACTAAGAGATGACCCATTGTAGAC 59.677 42.308 0.00 0.00 0.00 2.59
449 450 6.436027 AGACTAAGAGATGACCCATTGTAGA 58.564 40.000 0.00 0.00 0.00 2.59
450 451 6.723298 AGACTAAGAGATGACCCATTGTAG 57.277 41.667 0.00 0.00 0.00 2.74
451 452 8.783660 ATAAGACTAAGAGATGACCCATTGTA 57.216 34.615 0.00 0.00 0.00 2.41
452 453 7.566879 AGATAAGACTAAGAGATGACCCATTGT 59.433 37.037 0.00 0.00 0.00 2.71
453 454 7.961351 AGATAAGACTAAGAGATGACCCATTG 58.039 38.462 0.00 0.00 0.00 2.82
454 455 8.428063 CAAGATAAGACTAAGAGATGACCCATT 58.572 37.037 0.00 0.00 0.00 3.16
455 456 7.786943 TCAAGATAAGACTAAGAGATGACCCAT 59.213 37.037 0.00 0.00 0.00 4.00
456 457 7.126061 TCAAGATAAGACTAAGAGATGACCCA 58.874 38.462 0.00 0.00 0.00 4.51
457 458 7.589958 TCAAGATAAGACTAAGAGATGACCC 57.410 40.000 0.00 0.00 0.00 4.46
482 483 9.255029 ACCACATTTTTAGGAATTGCTAGTTAT 57.745 29.630 6.79 0.00 0.00 1.89
483 484 8.519526 CACCACATTTTTAGGAATTGCTAGTTA 58.480 33.333 6.79 0.00 0.00 2.24
484 485 7.232534 TCACCACATTTTTAGGAATTGCTAGTT 59.767 33.333 6.79 0.00 0.00 2.24
485 486 6.719370 TCACCACATTTTTAGGAATTGCTAGT 59.281 34.615 6.79 0.00 0.00 2.57
486 487 7.121168 TCTCACCACATTTTTAGGAATTGCTAG 59.879 37.037 6.79 0.00 0.00 3.42
487 488 6.945435 TCTCACCACATTTTTAGGAATTGCTA 59.055 34.615 2.04 2.04 0.00 3.49
488 489 5.774690 TCTCACCACATTTTTAGGAATTGCT 59.225 36.000 4.41 4.41 0.00 3.91
489 490 5.863935 GTCTCACCACATTTTTAGGAATTGC 59.136 40.000 0.00 0.00 0.00 3.56
490 491 6.980593 TGTCTCACCACATTTTTAGGAATTG 58.019 36.000 0.00 0.00 0.00 2.32
491 492 7.781324 ATGTCTCACCACATTTTTAGGAATT 57.219 32.000 0.00 0.00 32.81 2.17
492 493 9.479549 AATATGTCTCACCACATTTTTAGGAAT 57.520 29.630 0.00 0.00 38.07 3.01
493 494 8.739039 CAATATGTCTCACCACATTTTTAGGAA 58.261 33.333 0.00 0.00 38.07 3.36
494 495 7.888021 ACAATATGTCTCACCACATTTTTAGGA 59.112 33.333 0.00 0.00 38.07 2.94
495 496 7.970061 CACAATATGTCTCACCACATTTTTAGG 59.030 37.037 0.00 0.00 38.07 2.69
496 497 7.485913 GCACAATATGTCTCACCACATTTTTAG 59.514 37.037 0.00 0.00 38.07 1.85
497 498 7.176515 AGCACAATATGTCTCACCACATTTTTA 59.823 33.333 0.00 0.00 38.07 1.52
498 499 6.015180 AGCACAATATGTCTCACCACATTTTT 60.015 34.615 0.00 0.00 38.07 1.94
499 500 5.477984 AGCACAATATGTCTCACCACATTTT 59.522 36.000 0.00 0.00 38.07 1.82
500 501 5.012239 AGCACAATATGTCTCACCACATTT 58.988 37.500 0.00 0.00 38.07 2.32
501 502 4.592942 AGCACAATATGTCTCACCACATT 58.407 39.130 0.00 0.00 38.07 2.71
502 503 4.226427 AGCACAATATGTCTCACCACAT 57.774 40.909 0.00 0.00 40.28 3.21
503 504 3.701205 AGCACAATATGTCTCACCACA 57.299 42.857 0.00 0.00 0.00 4.17
504 505 5.419542 TCTTAGCACAATATGTCTCACCAC 58.580 41.667 0.00 0.00 0.00 4.16
505 506 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
506 507 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
507 508 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
508 509 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
509 510 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
510 511 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
511 512 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
544 545 9.389755 GAAGGCTTGTCTTCTCTTATTTAAGAT 57.610 33.333 3.46 0.00 41.12 2.40
545 546 8.779354 GAAGGCTTGTCTTCTCTTATTTAAGA 57.221 34.615 3.46 0.44 39.84 2.10
557 558 5.729510 ACTCATAAGAGAAGGCTTGTCTTC 58.270 41.667 34.48 14.28 44.98 2.87
558 559 5.753721 ACTCATAAGAGAAGGCTTGTCTT 57.246 39.130 33.39 33.39 44.98 3.01
559 560 5.483583 AGAACTCATAAGAGAAGGCTTGTCT 59.516 40.000 20.19 20.19 44.98 3.41
560 561 5.729510 AGAACTCATAAGAGAAGGCTTGTC 58.270 41.667 16.04 16.04 44.98 3.18
561 562 5.483583 AGAGAACTCATAAGAGAAGGCTTGT 59.516 40.000 3.46 0.00 44.98 3.16
562 563 5.976458 AGAGAACTCATAAGAGAAGGCTTG 58.024 41.667 3.46 0.00 44.98 4.01
563 564 5.957774 AGAGAGAACTCATAAGAGAAGGCTT 59.042 40.000 0.00 0.00 44.98 4.35
564 565 5.518865 AGAGAGAACTCATAAGAGAAGGCT 58.481 41.667 1.17 0.00 44.98 4.58
565 566 5.221244 GGAGAGAGAACTCATAAGAGAAGGC 60.221 48.000 1.17 0.00 44.98 4.35
566 567 6.129179 AGGAGAGAGAACTCATAAGAGAAGG 58.871 44.000 1.17 0.00 44.98 3.46
567 568 6.263168 GGAGGAGAGAGAACTCATAAGAGAAG 59.737 46.154 1.17 0.00 44.98 2.85
568 569 6.126409 GGAGGAGAGAGAACTCATAAGAGAA 58.874 44.000 1.17 0.00 44.98 2.87
569 570 5.192722 TGGAGGAGAGAGAACTCATAAGAGA 59.807 44.000 1.17 0.00 44.98 3.10
571 572 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
572 573 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
573 574 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
574 575 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
575 576 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
576 577 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
577 578 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
578 579 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
579 580 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
580 581 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
581 582 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
582 583 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
583 584 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
584 585 5.279910 GGATAAATGATGAGGTGGAGGAGAG 60.280 48.000 0.00 0.00 0.00 3.20
585 586 4.594920 GGATAAATGATGAGGTGGAGGAGA 59.405 45.833 0.00 0.00 0.00 3.71
586 587 4.263243 GGGATAAATGATGAGGTGGAGGAG 60.263 50.000 0.00 0.00 0.00 3.69
587 588 3.652869 GGGATAAATGATGAGGTGGAGGA 59.347 47.826 0.00 0.00 0.00 3.71
588 589 3.395607 TGGGATAAATGATGAGGTGGAGG 59.604 47.826 0.00 0.00 0.00 4.30
589 590 4.392940 GTGGGATAAATGATGAGGTGGAG 58.607 47.826 0.00 0.00 0.00 3.86
590 591 3.181455 CGTGGGATAAATGATGAGGTGGA 60.181 47.826 0.00 0.00 0.00 4.02
591 592 3.141398 CGTGGGATAAATGATGAGGTGG 58.859 50.000 0.00 0.00 0.00 4.61
592 593 3.561310 CACGTGGGATAAATGATGAGGTG 59.439 47.826 7.95 0.00 0.00 4.00
593 594 3.454447 TCACGTGGGATAAATGATGAGGT 59.546 43.478 17.00 0.00 0.00 3.85
594 595 3.809832 GTCACGTGGGATAAATGATGAGG 59.190 47.826 17.00 0.00 0.00 3.86
595 596 4.271049 GTGTCACGTGGGATAAATGATGAG 59.729 45.833 17.00 0.00 0.00 2.90
596 597 4.081142 AGTGTCACGTGGGATAAATGATGA 60.081 41.667 17.00 0.00 0.00 2.92
597 598 4.191544 AGTGTCACGTGGGATAAATGATG 58.808 43.478 17.00 0.00 0.00 3.07
598 599 4.487714 AGTGTCACGTGGGATAAATGAT 57.512 40.909 17.00 0.00 0.00 2.45
599 600 3.973206 AGTGTCACGTGGGATAAATGA 57.027 42.857 17.00 0.00 0.00 2.57
600 601 4.253685 AGAAGTGTCACGTGGGATAAATG 58.746 43.478 17.00 0.00 0.00 2.32
601 602 4.553330 AGAAGTGTCACGTGGGATAAAT 57.447 40.909 17.00 0.00 0.00 1.40
602 603 5.244402 TCTTAGAAGTGTCACGTGGGATAAA 59.756 40.000 17.00 0.00 0.00 1.40
603 604 4.768448 TCTTAGAAGTGTCACGTGGGATAA 59.232 41.667 17.00 5.16 0.00 1.75
604 605 4.338012 TCTTAGAAGTGTCACGTGGGATA 58.662 43.478 17.00 0.00 0.00 2.59
605 606 3.162666 TCTTAGAAGTGTCACGTGGGAT 58.837 45.455 17.00 0.00 0.00 3.85
606 607 2.589720 TCTTAGAAGTGTCACGTGGGA 58.410 47.619 17.00 0.00 0.00 4.37
607 608 3.594603 ATCTTAGAAGTGTCACGTGGG 57.405 47.619 17.00 0.00 0.00 4.61
608 609 4.106197 GCTATCTTAGAAGTGTCACGTGG 58.894 47.826 17.00 0.00 0.00 4.94
609 610 4.559251 GTGCTATCTTAGAAGTGTCACGTG 59.441 45.833 9.94 9.94 0.00 4.49
610 611 4.380655 GGTGCTATCTTAGAAGTGTCACGT 60.381 45.833 0.00 0.00 0.00 4.49
611 612 4.106197 GGTGCTATCTTAGAAGTGTCACG 58.894 47.826 0.00 0.00 0.00 4.35
612 613 5.073311 TGGTGCTATCTTAGAAGTGTCAC 57.927 43.478 0.00 0.00 0.00 3.67
613 614 5.939764 ATGGTGCTATCTTAGAAGTGTCA 57.060 39.130 0.00 0.00 0.00 3.58
614 615 6.109359 ACAATGGTGCTATCTTAGAAGTGTC 58.891 40.000 0.00 0.00 0.00 3.67
615 616 6.054860 ACAATGGTGCTATCTTAGAAGTGT 57.945 37.500 0.00 0.00 0.00 3.55
616 617 7.041721 TGTACAATGGTGCTATCTTAGAAGTG 58.958 38.462 0.00 0.00 0.00 3.16
617 618 7.182817 TGTACAATGGTGCTATCTTAGAAGT 57.817 36.000 0.00 0.00 0.00 3.01
618 619 7.307632 GCATGTACAATGGTGCTATCTTAGAAG 60.308 40.741 11.12 0.00 34.85 2.85
619 620 6.483307 GCATGTACAATGGTGCTATCTTAGAA 59.517 38.462 11.12 0.00 34.85 2.10
620 621 5.991606 GCATGTACAATGGTGCTATCTTAGA 59.008 40.000 11.12 0.00 34.85 2.10
621 622 5.180117 GGCATGTACAATGGTGCTATCTTAG 59.820 44.000 16.47 0.00 37.70 2.18
622 623 5.063204 GGCATGTACAATGGTGCTATCTTA 58.937 41.667 16.47 0.00 37.70 2.10
623 624 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
624 625 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
625 626 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
626 627 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
627 628 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
628 629 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
629 630 2.051334 TAGGGCATGTACAATGGTGC 57.949 50.000 10.12 10.12 36.88 5.01
630 631 6.899393 ATTATTAGGGCATGTACAATGGTG 57.101 37.500 0.00 0.00 0.00 4.17
631 632 8.224720 ACTTATTATTAGGGCATGTACAATGGT 58.775 33.333 0.00 0.00 0.00 3.55
632 633 8.514594 CACTTATTATTAGGGCATGTACAATGG 58.485 37.037 0.00 0.00 0.00 3.16
633 634 9.283768 TCACTTATTATTAGGGCATGTACAATG 57.716 33.333 0.00 0.12 0.00 2.82
634 635 9.860650 TTCACTTATTATTAGGGCATGTACAAT 57.139 29.630 0.00 0.00 0.00 2.71
635 636 9.688091 TTTCACTTATTATTAGGGCATGTACAA 57.312 29.630 0.00 0.00 0.00 2.41
636 637 9.688091 TTTTCACTTATTATTAGGGCATGTACA 57.312 29.630 0.00 0.00 0.00 2.90
787 790 0.256464 GAGGGAGAGGAGGAAGACGA 59.744 60.000 0.00 0.00 0.00 4.20
977 980 0.323629 CTGTAGCCCCTGAACCGAAA 59.676 55.000 0.00 0.00 0.00 3.46
1422 1439 0.394565 GCCTACTCTTCGGCCATCAT 59.605 55.000 2.24 0.00 40.43 2.45
2666 4661 3.848726 ACCATCAATTCGCAAAATCACC 58.151 40.909 0.00 0.00 0.00 4.02
2706 4703 4.039245 GGGAGGAAAGACCAAAAGGAAAAG 59.961 45.833 0.00 0.00 42.04 2.27
2826 4823 0.533032 CCCTTGACGTTCTCCTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
2835 4835 0.036010 CTCATGCCTCCCTTGACGTT 60.036 55.000 0.00 0.00 0.00 3.99
3032 5037 1.449601 ATGGCAACCGACATCGACC 60.450 57.895 2.09 0.00 35.13 4.79
3276 5356 2.652590 GAACGGAGGGAGTAGAAGCTA 58.347 52.381 0.00 0.00 0.00 3.32
3304 5384 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3305 5385 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
3306 5386 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
3309 5389 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
3313 5393 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
3317 5397 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3318 5398 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3325 5405 4.859304 TGTTCCGTATGTAGTCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
3326 5406 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
3328 5408 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
3330 5410 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
3331 5411 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
3334 5414 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
3381 5461 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
3384 5464 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
3385 5465 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
3415 5495 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3416 5496 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3423 5503 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3424 5504 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
3428 5508 5.767277 AAAATACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
3706 5789 6.148811 TGAAAACATGAAATACTTCCTCCGTC 59.851 38.462 0.00 0.00 0.00 4.79
3785 5868 2.158204 ACTTGGTAGGTAGGTGTCCACT 60.158 50.000 0.00 0.00 0.00 4.00
3814 5897 1.078709 ACTCATTCGCATTGTCCACG 58.921 50.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.