Multiple sequence alignment - TraesCS7A01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G355800 chr7A 100.000 5388 0 0 1001 6388 520908488 520903101 0.000000e+00 9950.0
1 TraesCS7A01G355800 chr7A 100.000 759 0 0 1 759 520909488 520908730 0.000000e+00 1402.0
2 TraesCS7A01G355800 chr7D 91.207 4549 247 74 1001 5454 475145536 475150026 0.000000e+00 6043.0
3 TraesCS7A01G355800 chr7D 90.972 576 32 1 1 556 552319117 552319692 0.000000e+00 758.0
4 TraesCS7A01G355800 chr7D 90.815 577 32 2 1 556 419799538 419798962 0.000000e+00 752.0
5 TraesCS7A01G355800 chr7D 87.864 206 7 6 555 759 475145306 475145494 6.440000e-55 226.0
6 TraesCS7A01G355800 chr7B 93.223 2597 125 23 2893 5454 498886647 498889227 0.000000e+00 3773.0
7 TraesCS7A01G355800 chr7B 86.457 1942 131 44 1001 2865 498884305 498886191 0.000000e+00 2008.0
8 TraesCS7A01G355800 chr7B 88.995 209 14 6 554 759 498884073 498884275 3.820000e-62 250.0
9 TraesCS7A01G355800 chr7B 100.000 31 0 0 2887 2917 498886613 498886643 2.490000e-04 58.4
10 TraesCS7A01G355800 chr3D 91.461 890 69 4 5499 6385 591193607 591192722 0.000000e+00 1216.0
11 TraesCS7A01G355800 chr3D 90.972 576 32 8 1 556 268138050 268137475 0.000000e+00 758.0
12 TraesCS7A01G355800 chrUn 93.924 576 15 1 1 556 364693438 364694013 0.000000e+00 852.0
13 TraesCS7A01G355800 chrUn 93.924 576 15 1 1 556 410965587 410966162 0.000000e+00 852.0
14 TraesCS7A01G355800 chrUn 93.403 576 18 1 1 556 469416963 469416388 0.000000e+00 835.0
15 TraesCS7A01G355800 chr2A 93.924 576 15 1 1 556 618996781 618997356 0.000000e+00 852.0
16 TraesCS7A01G355800 chr1A 93.403 576 18 1 1 556 6543429 6542854 0.000000e+00 835.0
17 TraesCS7A01G355800 chr1A 93.426 578 15 4 1 556 6557004 6556428 0.000000e+00 835.0
18 TraesCS7A01G355800 chr5D 86.332 578 56 7 1 556 30546441 30547017 5.480000e-170 608.0
19 TraesCS7A01G355800 chr4A 100.000 37 0 0 1009 1045 355197894 355197930 1.150000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G355800 chr7A 520903101 520909488 6387 True 5676.00 9950 100.00000 1 6388 2 chr7A.!!$R1 6387
1 TraesCS7A01G355800 chr7D 475145306 475150026 4720 False 3134.50 6043 89.53550 555 5454 2 chr7D.!!$F2 4899
2 TraesCS7A01G355800 chr7D 552319117 552319692 575 False 758.00 758 90.97200 1 556 1 chr7D.!!$F1 555
3 TraesCS7A01G355800 chr7D 419798962 419799538 576 True 752.00 752 90.81500 1 556 1 chr7D.!!$R1 555
4 TraesCS7A01G355800 chr7B 498884073 498889227 5154 False 1522.35 3773 92.16875 554 5454 4 chr7B.!!$F1 4900
5 TraesCS7A01G355800 chr3D 591192722 591193607 885 True 1216.00 1216 91.46100 5499 6385 1 chr3D.!!$R2 886
6 TraesCS7A01G355800 chr3D 268137475 268138050 575 True 758.00 758 90.97200 1 556 1 chr3D.!!$R1 555
7 TraesCS7A01G355800 chrUn 364693438 364694013 575 False 852.00 852 93.92400 1 556 1 chrUn.!!$F1 555
8 TraesCS7A01G355800 chrUn 410965587 410966162 575 False 852.00 852 93.92400 1 556 1 chrUn.!!$F2 555
9 TraesCS7A01G355800 chrUn 469416388 469416963 575 True 835.00 835 93.40300 1 556 1 chrUn.!!$R1 555
10 TraesCS7A01G355800 chr2A 618996781 618997356 575 False 852.00 852 93.92400 1 556 1 chr2A.!!$F1 555
11 TraesCS7A01G355800 chr1A 6542854 6543429 575 True 835.00 835 93.40300 1 556 1 chr1A.!!$R1 555
12 TraesCS7A01G355800 chr1A 6556428 6557004 576 True 835.00 835 93.42600 1 556 1 chr1A.!!$R2 555
13 TraesCS7A01G355800 chr5D 30546441 30547017 576 False 608.00 608 86.33200 1 556 1 chr5D.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 727 0.636647 TCCTAGATCCAGCCCACTCA 59.363 55.0 0.00 0.00 0.00 3.41 F
1217 1284 0.039074 GTAGCGCTCAGTCTGTGTGT 60.039 55.0 16.34 6.57 0.00 3.72 F
1218 1285 0.039165 TAGCGCTCAGTCTGTGTGTG 60.039 55.0 16.34 7.93 34.01 3.82 F
1407 1474 0.166814 CAGTTGCGCTTTGTAGCCTC 59.833 55.0 9.73 0.00 44.86 4.70 F
1523 1600 0.179032 TTTCTGGCGACTGCTTTCCA 60.179 50.0 0.00 0.00 42.25 3.53 F
2929 3521 0.321653 CCTTCCTTCCAAGACACCCG 60.322 60.0 0.00 0.00 0.00 5.28 F
4843 5448 0.035630 AGAGTGCTGATGCCAGTTCC 60.036 55.0 0.00 0.00 42.35 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2421 0.033366 GCCCACAACACAATTGGTCC 59.967 55.000 10.83 0.00 0.0 4.46 R
2296 2429 0.106268 ACCATGAAGCCCACAACACA 60.106 50.000 0.00 0.00 0.0 3.72 R
2298 2431 0.106268 ACACCATGAAGCCCACAACA 60.106 50.000 0.00 0.00 0.0 3.33 R
3140 3734 1.003580 AGCACCAGATCACCGTGAAAT 59.996 47.619 5.07 0.00 0.0 2.17 R
3436 4033 0.671781 GACGCATGCTCCACTTCTGT 60.672 55.000 17.13 2.12 0.0 3.41 R
4865 5470 0.954452 CCAGTTTGTTCAGGGTCAGC 59.046 55.000 0.00 0.00 0.0 4.26 R
6176 6813 0.101040 CCCAATACGTGCTGCCATTG 59.899 55.000 0.00 0.00 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.904649 AGACGAGGGCATCACAATCA 59.095 50.000 0.00 0.00 0.00 2.57
209 210 2.714250 TCCCAAATACAGTTGGTCCTGT 59.286 45.455 7.59 0.00 45.72 4.00
279 280 1.944024 CTAAACTTCACACGGGTGCAA 59.056 47.619 14.50 7.70 44.87 4.08
399 420 1.875514 CGGTCTATGGATTCGTCGGTA 59.124 52.381 0.00 0.00 0.00 4.02
464 485 1.621814 AGAACCGTTCGGAGATTTGGA 59.378 47.619 18.28 0.00 35.04 3.53
616 638 6.183360 CGAAAAGAAAAGGGTGAAAACCAAAG 60.183 38.462 0.00 0.00 0.00 2.77
705 727 0.636647 TCCTAGATCCAGCCCACTCA 59.363 55.000 0.00 0.00 0.00 3.41
706 728 0.755686 CCTAGATCCAGCCCACTCAC 59.244 60.000 0.00 0.00 0.00 3.51
707 729 0.755686 CTAGATCCAGCCCACTCACC 59.244 60.000 0.00 0.00 0.00 4.02
1049 1071 2.262915 CACCCGTCTCAGGTCAGC 59.737 66.667 0.00 0.00 34.56 4.26
1135 1166 4.157958 GTACGGCGTCGCTCGTCT 62.158 66.667 28.34 13.96 42.47 4.18
1177 1210 1.731720 CTCTGTTTCCCAGTAGCAGC 58.268 55.000 0.00 0.00 42.19 5.25
1206 1273 1.868251 CAGTTCGACGGTAGCGCTC 60.868 63.158 16.34 5.63 0.00 5.03
1217 1284 0.039074 GTAGCGCTCAGTCTGTGTGT 60.039 55.000 16.34 6.57 0.00 3.72
1218 1285 0.039165 TAGCGCTCAGTCTGTGTGTG 60.039 55.000 16.34 7.93 34.01 3.82
1220 1287 1.825285 GCGCTCAGTCTGTGTGTGTG 61.825 60.000 14.97 3.99 33.52 3.82
1221 1288 1.825285 CGCTCAGTCTGTGTGTGTGC 61.825 60.000 7.20 0.00 0.00 4.57
1222 1289 0.811219 GCTCAGTCTGTGTGTGTGCA 60.811 55.000 0.00 0.00 32.31 4.57
1224 1291 0.536724 TCAGTCTGTGTGTGTGCACT 59.463 50.000 19.41 0.00 45.44 4.40
1225 1292 1.066215 TCAGTCTGTGTGTGTGCACTT 60.066 47.619 19.41 0.00 45.44 3.16
1226 1293 1.328680 CAGTCTGTGTGTGTGCACTTC 59.671 52.381 19.41 11.68 45.44 3.01
1227 1294 1.208052 AGTCTGTGTGTGTGCACTTCT 59.792 47.619 19.41 0.65 45.44 2.85
1228 1295 1.594862 GTCTGTGTGTGTGCACTTCTC 59.405 52.381 19.41 12.10 45.44 2.87
1229 1296 1.206849 TCTGTGTGTGTGCACTTCTCA 59.793 47.619 19.41 14.39 45.44 3.27
1230 1297 1.596260 CTGTGTGTGTGCACTTCTCAG 59.404 52.381 19.41 17.74 45.44 3.35
1237 1304 0.667792 GTGCACTTCTCAGGGACGAC 60.668 60.000 10.32 0.00 0.00 4.34
1248 1315 1.062206 GGGACGACGAGCGAGTTAG 59.938 63.158 0.00 0.00 44.57 2.34
1250 1317 1.134075 GACGACGAGCGAGTTAGCA 59.866 57.895 0.00 0.00 44.57 3.49
1251 1318 0.858135 GACGACGAGCGAGTTAGCAG 60.858 60.000 0.00 0.00 44.57 4.24
1252 1319 1.134901 CGACGAGCGAGTTAGCAGT 59.865 57.895 0.00 0.00 44.57 4.40
1253 1320 1.128724 CGACGAGCGAGTTAGCAGTG 61.129 60.000 0.00 0.00 44.57 3.66
1254 1321 0.168348 GACGAGCGAGTTAGCAGTGA 59.832 55.000 0.00 0.00 40.15 3.41
1255 1322 0.169230 ACGAGCGAGTTAGCAGTGAG 59.831 55.000 0.00 0.00 40.15 3.51
1256 1323 1.136872 CGAGCGAGTTAGCAGTGAGC 61.137 60.000 0.00 0.00 46.19 4.26
1294 1361 4.360964 TGTTCGTGGGCCGTACGG 62.361 66.667 30.06 30.06 39.43 4.02
1318 1385 0.808125 TTTGGTTCCATCGGAATGCG 59.192 50.000 0.00 0.00 44.04 4.73
1337 1404 1.968017 TCCGAGGCTTGCTGCTTTG 60.968 57.895 0.00 0.00 42.39 2.77
1340 1407 1.212229 GAGGCTTGCTGCTTTGAGC 59.788 57.895 0.00 5.36 42.82 4.26
1373 1440 2.124860 GGACGAAACCGGGATGGG 60.125 66.667 6.32 0.00 44.64 4.00
1378 1445 4.109675 AAACCGGGATGGGCGGAG 62.110 66.667 6.32 0.00 44.64 4.63
1384 1451 1.227973 GGGATGGGCGGAGTTCATC 60.228 63.158 0.00 0.00 37.95 2.92
1404 1471 0.998727 GCACAGTTGCGCTTTGTAGC 60.999 55.000 9.73 12.15 44.21 3.58
1407 1474 0.166814 CAGTTGCGCTTTGTAGCCTC 59.833 55.000 9.73 0.00 44.86 4.70
1408 1475 0.250295 AGTTGCGCTTTGTAGCCTCA 60.250 50.000 9.73 0.00 44.86 3.86
1425 1502 5.988287 AGCCTCATCAAAAGGAAAACAAAA 58.012 33.333 0.00 0.00 35.83 2.44
1446 1523 7.221838 ACAAAATGAAAAGTAACATGGACGTTG 59.778 33.333 0.00 0.00 0.00 4.10
1466 1543 0.363512 CTGTCGAAACTGATGCGTCG 59.636 55.000 0.58 0.00 34.85 5.12
1488 1565 6.415573 GTCGAACTAGTACTACTACGTAGGTC 59.584 46.154 25.63 5.88 40.13 3.85
1511 1588 1.899142 TGTTTGGGGCTATTTTCTGGC 59.101 47.619 0.00 0.00 0.00 4.85
1523 1600 0.179032 TTTCTGGCGACTGCTTTCCA 60.179 50.000 0.00 0.00 42.25 3.53
1530 1607 1.291877 CGACTGCTTTCCACCTTCGG 61.292 60.000 0.00 0.00 0.00 4.30
1535 1612 3.244770 ACTGCTTTCCACCTTCGGATTTA 60.245 43.478 0.00 0.00 34.19 1.40
1541 1620 5.952526 TTCCACCTTCGGATTTACTTTTC 57.047 39.130 0.00 0.00 34.19 2.29
1554 1633 2.969443 ACTTTTCCGAGAACAATGCG 57.031 45.000 0.00 0.00 0.00 4.73
1555 1634 1.069227 ACTTTTCCGAGAACAATGCGC 60.069 47.619 0.00 0.00 0.00 6.09
1580 1659 2.486203 TGGATTTGTGCGTATTGTCACC 59.514 45.455 0.00 0.00 32.51 4.02
1584 1663 1.507562 TGTGCGTATTGTCACCTGTG 58.492 50.000 0.00 0.00 32.51 3.66
1590 1679 2.666508 CGTATTGTCACCTGTGCTGTAC 59.333 50.000 0.00 0.00 0.00 2.90
1593 1682 3.380479 TTGTCACCTGTGCTGTACTAC 57.620 47.619 0.00 0.00 0.00 2.73
1594 1683 2.594131 TGTCACCTGTGCTGTACTACT 58.406 47.619 0.00 0.00 0.00 2.57
1595 1684 3.758425 TGTCACCTGTGCTGTACTACTA 58.242 45.455 0.00 0.00 0.00 1.82
1596 1685 3.504906 TGTCACCTGTGCTGTACTACTAC 59.495 47.826 0.00 0.00 0.00 2.73
1597 1686 3.757493 GTCACCTGTGCTGTACTACTACT 59.243 47.826 0.00 0.00 0.00 2.57
1598 1687 3.756963 TCACCTGTGCTGTACTACTACTG 59.243 47.826 0.00 0.00 0.00 2.74
1712 1822 4.437239 CTGTAGCTTGATACTTCCTGGTG 58.563 47.826 0.00 0.00 0.00 4.17
1713 1823 3.197766 TGTAGCTTGATACTTCCTGGTGG 59.802 47.826 0.00 0.00 0.00 4.61
1714 1824 2.269940 AGCTTGATACTTCCTGGTGGT 58.730 47.619 0.00 0.00 34.23 4.16
1715 1825 3.450904 AGCTTGATACTTCCTGGTGGTA 58.549 45.455 0.00 0.00 34.23 3.25
1716 1826 3.452627 AGCTTGATACTTCCTGGTGGTAG 59.547 47.826 0.00 0.00 36.88 3.18
1719 1829 2.316677 TGATACTTCCTGGTGGTAGGGA 59.683 50.000 0.00 0.00 38.42 4.20
1739 1850 4.162509 GGGAACAAGACACTAGGAAGCTAT 59.837 45.833 0.00 0.00 0.00 2.97
1752 1867 3.891977 AGGAAGCTATGAACTATCTGCGA 59.108 43.478 0.00 0.00 0.00 5.10
1857 1990 0.661020 GGCCACGGTTGCATGTATAC 59.339 55.000 6.53 0.00 0.00 1.47
1896 2029 4.192317 GTCTTACCGAGCTCCATTCATTT 58.808 43.478 8.47 0.00 0.00 2.32
1899 2032 2.919228 ACCGAGCTCCATTCATTTACC 58.081 47.619 8.47 0.00 0.00 2.85
1901 2034 2.158755 CCGAGCTCCATTCATTTACCCT 60.159 50.000 8.47 0.00 0.00 4.34
2052 2185 9.895138 CATTCAGATTTTATTCCCTGGAATTTT 57.105 29.630 16.16 0.00 41.55 1.82
2091 2224 6.975772 CGCAAGAGCTTAGTAGAGAAATACTT 59.024 38.462 0.00 0.00 37.01 2.24
2117 2250 6.239944 CCCCCGTCCCAAAATATAATAGTGTA 60.240 42.308 0.00 0.00 0.00 2.90
2118 2251 6.652062 CCCCGTCCCAAAATATAATAGTGTAC 59.348 42.308 0.00 0.00 0.00 2.90
2195 2328 3.347958 TTTGTCGATGGTTGTTGCTTC 57.652 42.857 0.00 0.00 0.00 3.86
2208 2341 1.889170 GTTGCTTCAAGAAAGGGGGAG 59.111 52.381 0.00 0.00 35.37 4.30
2277 2410 3.055719 CTGCCGCGGACCACAAAT 61.056 61.111 33.48 0.00 0.00 2.32
2278 2411 2.596046 TGCCGCGGACCACAAATT 60.596 55.556 33.48 0.00 0.00 1.82
2279 2412 2.141122 CTGCCGCGGACCACAAATTT 62.141 55.000 33.48 0.00 0.00 1.82
2280 2413 1.732683 GCCGCGGACCACAAATTTG 60.733 57.895 33.48 16.67 0.00 2.32
2281 2414 1.953017 CCGCGGACCACAAATTTGA 59.047 52.632 24.07 0.00 0.00 2.69
2282 2415 0.386731 CCGCGGACCACAAATTTGAC 60.387 55.000 24.07 11.76 0.00 3.18
2283 2416 0.386731 CGCGGACCACAAATTTGACC 60.387 55.000 24.64 17.95 0.00 4.02
2284 2417 0.958822 GCGGACCACAAATTTGACCT 59.041 50.000 24.64 5.64 0.00 3.85
2285 2418 1.339929 GCGGACCACAAATTTGACCTT 59.660 47.619 24.64 5.70 0.00 3.50
2286 2419 2.862140 GCGGACCACAAATTTGACCTTG 60.862 50.000 24.64 11.79 0.00 3.61
2287 2420 2.288152 CGGACCACAAATTTGACCTTGG 60.288 50.000 24.64 21.39 0.00 3.61
2288 2421 2.037121 GGACCACAAATTTGACCTTGGG 59.963 50.000 24.64 15.75 0.00 4.12
2289 2422 2.837532 CCACAAATTTGACCTTGGGG 57.162 50.000 24.64 1.96 39.66 4.96
2291 2424 3.385193 CACAAATTTGACCTTGGGGAC 57.615 47.619 24.64 0.00 36.25 4.46
2337 2494 2.825532 GTTGCCTTCCATGCCTTTTAGA 59.174 45.455 0.00 0.00 0.00 2.10
2349 2506 7.398618 TCCATGCCTTTTAGATTTTTGTCCATA 59.601 33.333 0.00 0.00 0.00 2.74
2369 2526 5.120208 CCATAGTACCGTGCATAATAACTGC 59.880 44.000 0.00 0.00 40.10 4.40
2580 2743 8.680903 CATCAGCTTCTTGGTTCTGTTATTATT 58.319 33.333 0.00 0.00 0.00 1.40
2611 2774 2.040412 AGTTTCTGAGGTTGGACATCCC 59.960 50.000 0.00 0.00 34.29 3.85
2625 2788 5.285401 TGGACATCCCTTTCTGTAGGATAA 58.715 41.667 0.00 0.00 38.36 1.75
2655 2818 9.546428 CTTTGTTTTTAAAAAGGTGGATGATCT 57.454 29.630 13.58 0.00 31.15 2.75
2720 2883 2.218603 GACCGTTTTCTGTGTCACCAT 58.781 47.619 0.00 0.00 0.00 3.55
2818 2981 1.378646 GTTGCTGAGGTTAGGCCCC 60.379 63.158 0.00 0.00 38.26 5.80
2842 3005 8.456471 CCCACAATTATCATTGCAGATATAGTG 58.544 37.037 0.00 11.71 43.39 2.74
2873 3037 1.833787 TAAACGCTGTCCCCAGACCC 61.834 60.000 0.00 0.00 42.81 4.46
2877 3041 2.204151 CTGTCCCCAGACCCCCTT 60.204 66.667 0.00 0.00 42.81 3.95
2929 3521 0.321653 CCTTCCTTCCAAGACACCCG 60.322 60.000 0.00 0.00 0.00 5.28
2984 3576 6.018994 ACTGTAAACTGCTAGAAACGACAAAG 60.019 38.462 0.00 0.00 0.00 2.77
3211 3805 9.593134 GTGATTTCTATCTATCATGGGTCATAC 57.407 37.037 0.00 0.00 33.69 2.39
3392 3986 5.498393 TGCCCAATGTGATAATTTTGCATT 58.502 33.333 0.00 0.00 0.00 3.56
3393 3987 6.647229 TGCCCAATGTGATAATTTTGCATTA 58.353 32.000 0.00 0.00 0.00 1.90
3429 4023 9.650539 TTTCTGCAAAAGCAGCATTAATATTTA 57.349 25.926 12.34 0.00 41.82 1.40
3452 4049 2.393271 ACTACAGAAGTGGAGCATGC 57.607 50.000 10.51 10.51 38.36 4.06
3469 4066 3.752796 GCGTCTGGCAGGTGTTATA 57.247 52.632 15.73 0.00 42.87 0.98
3480 4077 6.717289 TGGCAGGTGTTATACTACTTTTGAT 58.283 36.000 0.00 0.00 0.00 2.57
3482 4079 7.668052 TGGCAGGTGTTATACTACTTTTGATTT 59.332 33.333 0.00 0.00 0.00 2.17
3555 4154 9.734984 TTTGTCATCCAGATACTACTATATCGA 57.265 33.333 0.00 0.00 36.78 3.59
3556 4155 9.734984 TTGTCATCCAGATACTACTATATCGAA 57.265 33.333 0.00 0.00 36.78 3.71
3557 4156 9.163899 TGTCATCCAGATACTACTATATCGAAC 57.836 37.037 0.00 0.00 36.78 3.95
3558 4157 9.386010 GTCATCCAGATACTACTATATCGAACT 57.614 37.037 0.00 0.00 36.78 3.01
3559 4158 9.961264 TCATCCAGATACTACTATATCGAACTT 57.039 33.333 0.00 0.00 36.78 2.66
3560 4159 9.995957 CATCCAGATACTACTATATCGAACTTG 57.004 37.037 0.00 0.00 36.78 3.16
3561 4160 8.563123 TCCAGATACTACTATATCGAACTTGG 57.437 38.462 0.00 0.00 36.78 3.61
3562 4161 8.162085 TCCAGATACTACTATATCGAACTTGGT 58.838 37.037 0.00 0.00 36.78 3.67
3563 4162 9.445878 CCAGATACTACTATATCGAACTTGGTA 57.554 37.037 0.00 0.00 36.78 3.25
3575 4174 5.673514 TCGAACTTGGTAACTTGGTAACTT 58.326 37.500 0.00 0.00 35.02 2.66
3577 4176 5.509716 AACTTGGTAACTTGGTAACTTGC 57.490 39.130 0.00 0.00 35.02 4.01
3578 4177 4.528920 ACTTGGTAACTTGGTAACTTGCA 58.471 39.130 0.00 0.00 35.02 4.08
3610 4209 8.588789 ACCTTTGTTTTTCGTTTATTCTTTTCG 58.411 29.630 0.00 0.00 0.00 3.46
3855 4454 5.621193 AGGTACTAATGGTGATGGTAATGC 58.379 41.667 0.00 0.00 36.02 3.56
3961 4560 3.683802 GGACTCCCATGATGATGATTCC 58.316 50.000 0.00 0.10 0.00 3.01
3994 4593 2.301583 GAGGTCAGAAGCTGAAGAAGGT 59.698 50.000 0.00 0.00 42.46 3.50
4054 4653 7.307493 TCGTAATGAAACATCTGAATCCAAG 57.693 36.000 0.00 0.00 0.00 3.61
4077 4676 6.339730 AGTCATCTGATGCTGAGACTAAAAG 58.660 40.000 12.78 0.00 34.83 2.27
4088 4687 5.293079 GCTGAGACTAAAAGTGATGTCCATC 59.707 44.000 0.22 0.22 38.29 3.51
4154 4753 0.107456 ATCCGCTAATGCAGGTCAGG 59.893 55.000 0.00 0.00 39.64 3.86
4192 4791 1.377536 GTTCAGATGGAGAGCAAGCC 58.622 55.000 0.00 0.00 0.00 4.35
4297 4896 2.223548 CGCTGAGACTCTTCCAGATGAG 60.224 54.545 3.68 8.57 38.24 2.90
4440 5039 1.064166 AGGGGCAAGAACATCATCTGG 60.064 52.381 0.00 0.00 0.00 3.86
4468 5067 0.747283 CTGGTGATGCTGAGAAGGGC 60.747 60.000 0.00 0.00 0.00 5.19
4534 5133 3.127533 GCTGGTGGTGATGGCGAC 61.128 66.667 0.00 0.00 0.00 5.19
4553 5152 2.544267 GACAAGGGTTCAGAAACGAGTG 59.456 50.000 0.00 0.00 36.16 3.51
4658 5257 1.605058 TACGCAGCCAGAGAACTCCC 61.605 60.000 0.00 0.00 0.00 4.30
4660 5259 1.078567 GCAGCCAGAGAACTCCCAG 60.079 63.158 0.00 0.00 0.00 4.45
4663 5262 2.674220 GCCAGAGAACTCCCAGGGG 61.674 68.421 5.33 0.92 0.00 4.79
4771 5376 3.084039 GACAAGCAATGGTGATCAGGAA 58.916 45.455 0.00 0.00 0.00 3.36
4806 5411 1.691196 ACCAACACATCAACCAGTGG 58.309 50.000 7.91 7.91 39.99 4.00
4809 5414 0.179032 AACACATCAACCAGTGGCGA 60.179 50.000 9.78 6.72 39.99 5.54
4843 5448 0.035630 AGAGTGCTGATGCCAGTTCC 60.036 55.000 0.00 0.00 42.35 3.62
4865 5470 1.805539 TCGAGCGGCTCAAATGACG 60.806 57.895 27.83 13.92 0.00 4.35
4869 5474 3.874873 CGGCTCAAATGACGCTGA 58.125 55.556 7.49 0.00 31.83 4.26
4894 5499 5.343249 CCTGAACAAACTGGAAAAACTGAG 58.657 41.667 0.00 0.00 0.00 3.35
4918 5523 1.135972 CAGTGATAGCACCAAACGCAC 60.136 52.381 7.66 0.00 46.32 5.34
5002 5607 8.862550 AGAAAGATTGTTTGTTTGTTCAGATC 57.137 30.769 0.00 0.00 0.00 2.75
5211 5817 5.116882 GGCGACCTCTGTTCTTAATGTAAT 58.883 41.667 0.00 0.00 0.00 1.89
5252 5858 2.878406 TGTTGCTTCTTGGTTACAGCTC 59.122 45.455 0.00 0.00 33.15 4.09
5312 5918 4.065789 CTCCTTCTACACTTGTTTGGACC 58.934 47.826 0.00 0.00 0.00 4.46
5315 5921 5.546499 TCCTTCTACACTTGTTTGGACCTAT 59.454 40.000 0.00 0.00 0.00 2.57
5341 5947 8.732746 AGGAAAAGTATGGTATATGTTGTGAC 57.267 34.615 0.00 0.00 0.00 3.67
5357 5963 3.742385 TGTGACTTGTGAGATTGCATCA 58.258 40.909 0.00 0.00 0.00 3.07
5358 5964 3.499537 TGTGACTTGTGAGATTGCATCAC 59.500 43.478 11.24 11.24 45.88 3.06
5363 5969 2.813779 GTGAGATTGCATCACGGTTC 57.186 50.000 3.31 0.00 37.88 3.62
5364 5970 2.076100 GTGAGATTGCATCACGGTTCA 58.924 47.619 3.31 0.00 37.88 3.18
5365 5971 2.679837 GTGAGATTGCATCACGGTTCAT 59.320 45.455 3.31 0.00 37.88 2.57
5366 5972 3.127548 GTGAGATTGCATCACGGTTCATT 59.872 43.478 3.31 0.00 37.88 2.57
5367 5973 3.758023 TGAGATTGCATCACGGTTCATTT 59.242 39.130 0.00 0.00 0.00 2.32
5368 5974 4.218200 TGAGATTGCATCACGGTTCATTTT 59.782 37.500 0.00 0.00 0.00 1.82
5369 5975 4.487948 AGATTGCATCACGGTTCATTTTG 58.512 39.130 0.00 0.00 0.00 2.44
5370 5976 2.063156 TGCATCACGGTTCATTTTGC 57.937 45.000 0.00 0.00 0.00 3.68
5379 6013 4.210328 CACGGTTCATTTTGCCTTTTTACC 59.790 41.667 0.00 0.00 0.00 2.85
5381 6015 4.811557 CGGTTCATTTTGCCTTTTTACCAA 59.188 37.500 0.00 0.00 0.00 3.67
5386 6020 5.994668 TCATTTTGCCTTTTTACCAATGTCC 59.005 36.000 0.00 0.00 0.00 4.02
5390 6024 4.941713 TGCCTTTTTACCAATGTCCCTAT 58.058 39.130 0.00 0.00 0.00 2.57
5393 6027 5.186992 GCCTTTTTACCAATGTCCCTATTGT 59.813 40.000 0.00 0.00 36.54 2.71
5402 6036 5.068198 CCAATGTCCCTATTGTCTTGGATTG 59.932 44.000 0.00 0.00 36.54 2.67
5403 6037 5.715439 ATGTCCCTATTGTCTTGGATTGA 57.285 39.130 0.00 0.00 0.00 2.57
5421 6055 5.220681 GGATTGATTGTTCCTTAGTCGCTTC 60.221 44.000 0.00 0.00 0.00 3.86
5427 6061 3.321111 TGTTCCTTAGTCGCTTCAGAAGT 59.679 43.478 11.94 0.00 0.00 3.01
5430 6064 2.161808 CCTTAGTCGCTTCAGAAGTCGA 59.838 50.000 19.44 19.44 35.69 4.20
5454 6088 1.811558 CGTGGATTGGGCTGGACATAG 60.812 57.143 0.00 0.00 0.00 2.23
5455 6089 1.490490 GTGGATTGGGCTGGACATAGA 59.510 52.381 0.00 0.00 0.00 1.98
5456 6090 1.490490 TGGATTGGGCTGGACATAGAC 59.510 52.381 0.00 0.00 0.00 2.59
5457 6091 1.202818 GGATTGGGCTGGACATAGACC 60.203 57.143 0.00 0.00 46.71 3.85
5461 6095 2.736670 GGGCTGGACATAGACCATTT 57.263 50.000 0.00 0.00 45.76 2.32
5462 6096 2.301346 GGGCTGGACATAGACCATTTG 58.699 52.381 0.00 0.00 45.76 2.32
5463 6097 2.357154 GGGCTGGACATAGACCATTTGT 60.357 50.000 0.00 0.00 45.76 2.83
5464 6098 3.356290 GGCTGGACATAGACCATTTGTT 58.644 45.455 0.00 0.00 36.79 2.83
5465 6099 3.129287 GGCTGGACATAGACCATTTGTTG 59.871 47.826 0.00 0.00 36.79 3.33
5466 6100 3.428045 GCTGGACATAGACCATTTGTTGC 60.428 47.826 0.00 0.00 36.79 4.17
5467 6101 3.088532 TGGACATAGACCATTTGTTGCC 58.911 45.455 0.00 0.00 32.03 4.52
5468 6102 2.097466 GGACATAGACCATTTGTTGCCG 59.903 50.000 0.00 0.00 0.00 5.69
5469 6103 3.006940 GACATAGACCATTTGTTGCCGA 58.993 45.455 0.00 0.00 0.00 5.54
5470 6104 3.620488 ACATAGACCATTTGTTGCCGAT 58.380 40.909 0.00 0.00 0.00 4.18
5471 6105 4.016444 ACATAGACCATTTGTTGCCGATT 58.984 39.130 0.00 0.00 0.00 3.34
5472 6106 4.462483 ACATAGACCATTTGTTGCCGATTT 59.538 37.500 0.00 0.00 0.00 2.17
5473 6107 5.047377 ACATAGACCATTTGTTGCCGATTTT 60.047 36.000 0.00 0.00 0.00 1.82
5474 6108 6.151985 ACATAGACCATTTGTTGCCGATTTTA 59.848 34.615 0.00 0.00 0.00 1.52
5475 6109 4.805219 AGACCATTTGTTGCCGATTTTAC 58.195 39.130 0.00 0.00 0.00 2.01
5476 6110 4.522789 AGACCATTTGTTGCCGATTTTACT 59.477 37.500 0.00 0.00 0.00 2.24
5477 6111 5.708230 AGACCATTTGTTGCCGATTTTACTA 59.292 36.000 0.00 0.00 0.00 1.82
5478 6112 5.949735 ACCATTTGTTGCCGATTTTACTAG 58.050 37.500 0.00 0.00 0.00 2.57
5479 6113 4.798387 CCATTTGTTGCCGATTTTACTAGC 59.202 41.667 0.00 0.00 0.00 3.42
5480 6114 5.398169 CATTTGTTGCCGATTTTACTAGCA 58.602 37.500 0.00 0.00 0.00 3.49
5481 6115 5.637006 TTTGTTGCCGATTTTACTAGCAT 57.363 34.783 0.00 0.00 32.67 3.79
5482 6116 5.637006 TTGTTGCCGATTTTACTAGCATT 57.363 34.783 0.00 0.00 32.67 3.56
5483 6117 6.745159 TTGTTGCCGATTTTACTAGCATTA 57.255 33.333 0.00 0.00 32.67 1.90
5484 6118 6.358118 TGTTGCCGATTTTACTAGCATTAG 57.642 37.500 0.00 0.00 32.67 1.73
5485 6119 5.205565 GTTGCCGATTTTACTAGCATTAGC 58.794 41.667 0.00 0.00 42.56 3.09
5508 6142 2.496070 GACCAATGTTTTCCCCTAAGGC 59.504 50.000 0.00 0.00 34.51 4.35
5523 6157 1.482954 AAGGCTACGACCTAGGGTTC 58.517 55.000 14.81 1.01 39.93 3.62
5536 6170 2.359967 GGGTTCTCCAGTCCCCTCG 61.360 68.421 0.00 0.00 35.52 4.63
5538 6172 2.683933 TTCTCCAGTCCCCTCGGC 60.684 66.667 0.00 0.00 0.00 5.54
5568 6202 1.527380 GTGGGTTCCCGTCTTTGCA 60.527 57.895 3.27 0.00 0.00 4.08
5611 6245 1.222936 CAGATCACCTGTCCCCTGC 59.777 63.158 0.00 0.00 38.10 4.85
5636 6270 2.653448 CTCGCGCACTGATCGAGG 60.653 66.667 8.75 0.00 44.06 4.63
5638 6272 4.498520 CGCGCACTGATCGAGGGT 62.499 66.667 8.75 0.00 0.00 4.34
5643 6277 0.250513 GCACTGATCGAGGGTTCCTT 59.749 55.000 0.00 0.00 31.76 3.36
5645 6279 1.134670 CACTGATCGAGGGTTCCTTCC 60.135 57.143 0.00 0.00 31.76 3.46
5646 6280 1.273324 ACTGATCGAGGGTTCCTTCCT 60.273 52.381 0.00 0.00 37.33 3.36
5647 6281 2.024273 ACTGATCGAGGGTTCCTTCCTA 60.024 50.000 0.00 0.00 34.21 2.94
5648 6282 3.235200 CTGATCGAGGGTTCCTTCCTAT 58.765 50.000 0.00 0.00 34.21 2.57
5689 6323 5.590663 GGATCTCATCTAGGGTTTGGAAAAC 59.409 44.000 0.00 0.00 0.00 2.43
5690 6324 4.918588 TCTCATCTAGGGTTTGGAAAACC 58.081 43.478 12.53 12.53 46.34 3.27
5698 6334 1.752498 GGTTTGGAAAACCGTGGAAGT 59.248 47.619 6.16 0.00 0.00 3.01
5716 6352 1.827969 AGTCTGCTAATGGCTTCGACT 59.172 47.619 3.86 3.86 42.39 4.18
5718 6354 0.654683 CTGCTAATGGCTTCGACTGC 59.345 55.000 1.32 1.32 42.39 4.40
5757 6393 1.524482 GGAAGGAAGCAGCGGATCT 59.476 57.895 0.00 0.00 0.00 2.75
5762 6398 1.143620 GAAGCAGCGGATCTGAGCT 59.856 57.895 14.16 14.16 45.72 4.09
5763 6399 0.875474 GAAGCAGCGGATCTGAGCTC 60.875 60.000 18.60 6.82 45.72 4.09
5826 6462 5.222337 ACAATTTAGTTTGGGAGGATGAGGT 60.222 40.000 0.00 0.00 0.00 3.85
5830 6466 2.922283 AGTTTGGGAGGATGAGGTTGAT 59.078 45.455 0.00 0.00 0.00 2.57
5842 6478 2.573009 TGAGGTTGATGAGCCAGATGAA 59.427 45.455 0.00 0.00 0.00 2.57
5848 6484 2.842496 TGATGAGCCAGATGAAAGACCT 59.158 45.455 0.00 0.00 0.00 3.85
5863 6499 0.955919 GACCTAAGTGGCTTGCGCTT 60.956 55.000 9.73 0.00 40.22 4.68
5875 6511 1.000274 CTTGCGCTTGCTAGGGTTTTT 60.000 47.619 9.73 0.00 37.74 1.94
5899 6535 6.566079 ACAGAGAAATCATATGGTCAAGGA 57.434 37.500 2.13 0.00 0.00 3.36
5923 6559 2.203070 ATCGCGGACATGAAGGCC 60.203 61.111 6.13 0.00 44.64 5.19
5932 6568 0.323725 ACATGAAGGCCGCTTGGAAT 60.324 50.000 15.47 0.00 33.02 3.01
5939 6575 2.436646 CCGCTTGGAATCCAGCGT 60.437 61.111 29.53 0.00 43.80 5.07
5947 6583 1.552792 TGGAATCCAGCGTGTGATGTA 59.447 47.619 0.00 0.00 0.00 2.29
6027 6663 4.335416 TGGAACAAAGCTATTCCTCAAGG 58.665 43.478 19.64 0.00 44.13 3.61
6051 6687 1.384191 GGGACTTCAAGGGCATGGT 59.616 57.895 0.00 0.00 0.00 3.55
6067 6703 1.689984 TGGTGCTTGTGATTGCAGAA 58.310 45.000 0.00 0.00 40.06 3.02
6076 6712 2.613595 TGTGATTGCAGAATATGACGGC 59.386 45.455 0.00 0.00 0.00 5.68
6138 6775 4.702131 ACTTGGTGTCAAATCCATAAGCTC 59.298 41.667 0.00 0.00 33.50 4.09
6140 6777 3.266772 TGGTGTCAAATCCATAAGCTCCT 59.733 43.478 0.00 0.00 0.00 3.69
6150 6787 5.912149 TCCATAAGCTCCTTGATATGGTT 57.088 39.130 16.06 0.00 43.38 3.67
6176 6813 3.042887 AGCGTGAAAATTTCGTGAAAGC 58.957 40.909 0.97 0.00 33.32 3.51
6195 6832 0.101040 CAATGGCAGCACGTATTGGG 59.899 55.000 0.00 0.00 0.00 4.12
6214 6851 1.827969 GGGAAGTGCTAGAGCTTCAGA 59.172 52.381 20.71 0.00 41.93 3.27
6225 6862 2.093235 AGAGCTTCAGATTGTACTGCCC 60.093 50.000 0.00 0.00 37.75 5.36
6237 6874 1.272212 GTACTGCCCAATGGGTTTGTG 59.728 52.381 21.02 8.21 46.51 3.33
6249 6886 4.028993 TGGGTTTGTGGGAGAGTTTATC 57.971 45.455 0.00 0.00 0.00 1.75
6279 6916 0.592637 TGCGGCTTGATGTCAACAAG 59.407 50.000 16.36 16.36 44.92 3.16
6298 6935 5.116180 ACAAGAAACTCACGAGATTTGTGA 58.884 37.500 0.00 0.00 43.68 3.58
6324 6961 1.147817 ACCAAAGCAGGGGAAACTGAT 59.852 47.619 0.00 0.00 40.97 2.90
6349 6986 7.907214 TTCTATCAGGTTAAGTTTGAGAAGC 57.093 36.000 0.00 0.00 0.00 3.86
6354 6991 2.884639 GGTTAAGTTTGAGAAGCTGCCA 59.115 45.455 0.00 0.00 0.00 4.92
6357 6994 2.355010 AGTTTGAGAAGCTGCCAGTT 57.645 45.000 0.00 0.00 0.00 3.16
6381 7018 3.895656 TCTGCTACAACTGTGGTCTACTT 59.104 43.478 0.00 0.00 0.00 2.24
6385 7022 2.124411 ACAACTGTGGTCTACTTGGGT 58.876 47.619 0.00 0.00 0.00 4.51
6386 7023 2.508300 ACAACTGTGGTCTACTTGGGTT 59.492 45.455 0.00 0.00 0.00 4.11
6387 7024 2.878406 CAACTGTGGTCTACTTGGGTTG 59.122 50.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.497675 TCGCTGAATAGTCTTTGGCTCT 59.502 45.455 0.00 0.00 0.00 4.09
67 68 4.591321 TGATCTTTACCCATCCAGCTTT 57.409 40.909 0.00 0.00 0.00 3.51
209 210 0.172578 CGCTAACACCTCGACCATCA 59.827 55.000 0.00 0.00 0.00 3.07
279 280 2.157738 GACAAGCAATCAAGCTCCACT 58.842 47.619 0.00 0.00 45.89 4.00
399 420 0.767375 ATGAGCGGCTACATTCCCAT 59.233 50.000 0.60 0.00 0.00 4.00
602 624 1.300620 GCGGCTTTGGTTTTCACCC 60.301 57.895 0.00 0.00 43.49 4.61
633 655 2.282446 GATCGTGGGAGGGAGGGA 59.718 66.667 0.00 0.00 0.00 4.20
634 656 2.041922 TGATCGTGGGAGGGAGGG 60.042 66.667 0.00 0.00 0.00 4.30
635 657 2.786495 CGTGATCGTGGGAGGGAGG 61.786 68.421 0.00 0.00 0.00 4.30
636 658 2.808315 CGTGATCGTGGGAGGGAG 59.192 66.667 0.00 0.00 0.00 4.30
676 698 3.648545 GCTGGATCTAGGAATTAGTGGGT 59.351 47.826 8.31 0.00 0.00 4.51
677 699 3.008485 GGCTGGATCTAGGAATTAGTGGG 59.992 52.174 8.31 0.00 0.00 4.61
678 700 3.008485 GGGCTGGATCTAGGAATTAGTGG 59.992 52.174 8.31 0.00 0.00 4.00
705 727 2.453497 TTGATGGGGTGGGTGGGT 60.453 61.111 0.00 0.00 0.00 4.51
706 728 2.037208 GTTGATGGGGTGGGTGGG 59.963 66.667 0.00 0.00 0.00 4.61
707 729 2.361104 CGTTGATGGGGTGGGTGG 60.361 66.667 0.00 0.00 0.00 4.61
1146 1177 1.266718 GAAACAGAGCACGCATGGAAA 59.733 47.619 0.00 0.00 0.00 3.13
1150 1181 1.236616 TGGGAAACAGAGCACGCATG 61.237 55.000 0.00 0.00 0.00 4.06
1196 1229 1.515088 CACAGACTGAGCGCTACCG 60.515 63.158 11.50 3.89 37.57 4.02
1217 1284 1.112916 TCGTCCCTGAGAAGTGCACA 61.113 55.000 21.04 0.00 0.00 4.57
1218 1285 0.667792 GTCGTCCCTGAGAAGTGCAC 60.668 60.000 9.40 9.40 0.00 4.57
1220 1287 1.444553 CGTCGTCCCTGAGAAGTGC 60.445 63.158 0.00 0.00 0.00 4.40
1221 1288 0.169230 CTCGTCGTCCCTGAGAAGTG 59.831 60.000 0.00 0.00 31.31 3.16
1222 1289 1.587933 GCTCGTCGTCCCTGAGAAGT 61.588 60.000 0.00 0.00 31.31 3.01
1224 1291 2.687805 CGCTCGTCGTCCCTGAGAA 61.688 63.158 0.00 0.00 31.31 2.87
1225 1292 3.125573 CGCTCGTCGTCCCTGAGA 61.126 66.667 0.00 0.00 31.31 3.27
1226 1293 3.102107 CTCGCTCGTCGTCCCTGAG 62.102 68.421 0.00 0.00 39.67 3.35
1227 1294 3.125573 CTCGCTCGTCGTCCCTGA 61.126 66.667 0.00 0.00 39.67 3.86
1228 1295 1.642037 TAACTCGCTCGTCGTCCCTG 61.642 60.000 0.00 0.00 39.67 4.45
1229 1296 1.367599 CTAACTCGCTCGTCGTCCCT 61.368 60.000 0.00 0.00 39.67 4.20
1230 1297 1.062206 CTAACTCGCTCGTCGTCCC 59.938 63.158 0.00 0.00 39.67 4.46
1237 1304 1.136872 GCTCACTGCTAACTCGCTCG 61.137 60.000 0.00 0.00 38.95 5.03
1271 1338 3.747976 GGCCCACGAACACATGGC 61.748 66.667 0.00 0.00 41.42 4.40
1294 1361 1.750193 TCCGATGGAACCAAATCTGC 58.250 50.000 0.00 0.00 0.00 4.26
1295 1362 3.489738 GCATTCCGATGGAACCAAATCTG 60.490 47.826 0.00 0.00 45.07 2.90
1340 1407 1.255342 CGTCCTTGCGATACATGAACG 59.745 52.381 0.00 3.09 0.00 3.95
1404 1471 8.436046 TTCATTTTGTTTTCCTTTTGATGAGG 57.564 30.769 0.00 0.00 35.53 3.86
1425 1502 4.518970 AGCAACGTCCATGTTACTTTTCAT 59.481 37.500 0.00 0.00 0.00 2.57
1446 1523 0.093705 GACGCATCAGTTTCGACAGC 59.906 55.000 0.00 0.00 0.00 4.40
1511 1588 2.153913 CGAAGGTGGAAAGCAGTCG 58.846 57.895 0.00 0.00 0.00 4.18
1530 1607 5.508224 CGCATTGTTCTCGGAAAAGTAAATC 59.492 40.000 0.00 0.00 0.00 2.17
1535 1612 1.069227 GCGCATTGTTCTCGGAAAAGT 60.069 47.619 0.30 0.00 0.00 2.66
1541 1620 0.454957 CAAAGGCGCATTGTTCTCGG 60.455 55.000 8.59 0.00 0.00 4.63
1554 1633 2.923020 CAATACGCACAAATCCAAAGGC 59.077 45.455 0.00 0.00 0.00 4.35
1555 1634 4.165779 GACAATACGCACAAATCCAAAGG 58.834 43.478 0.00 0.00 0.00 3.11
1580 1659 3.057526 TGCACAGTAGTAGTACAGCACAG 60.058 47.826 14.63 0.00 32.29 3.66
1584 1663 2.731341 CGGTGCACAGTAGTAGTACAGC 60.731 54.545 20.43 10.68 0.00 4.40
1590 1679 1.153628 GGCCGGTGCACAGTAGTAG 60.154 63.158 20.43 2.37 40.13 2.57
1593 1682 2.742372 GTGGCCGGTGCACAGTAG 60.742 66.667 20.43 3.93 40.13 2.57
1594 1683 4.323477 GGTGGCCGGTGCACAGTA 62.323 66.667 20.43 0.26 40.13 2.74
1712 1822 3.438183 TCCTAGTGTCTTGTTCCCTACC 58.562 50.000 0.00 0.00 0.00 3.18
1713 1823 4.621038 GCTTCCTAGTGTCTTGTTCCCTAC 60.621 50.000 0.00 0.00 0.00 3.18
1714 1824 3.514309 GCTTCCTAGTGTCTTGTTCCCTA 59.486 47.826 0.00 0.00 0.00 3.53
1715 1825 2.303311 GCTTCCTAGTGTCTTGTTCCCT 59.697 50.000 0.00 0.00 0.00 4.20
1716 1826 2.303311 AGCTTCCTAGTGTCTTGTTCCC 59.697 50.000 0.00 0.00 0.00 3.97
1719 1829 6.014156 AGTTCATAGCTTCCTAGTGTCTTGTT 60.014 38.462 0.00 0.00 0.00 2.83
1739 1850 3.068732 CCTTCCATCTCGCAGATAGTTCA 59.931 47.826 0.00 0.00 32.12 3.18
1752 1867 3.814504 TTCTCCAAAAGCCTTCCATCT 57.185 42.857 0.00 0.00 0.00 2.90
1857 1990 6.346598 CGGTAAGACACAACAGTGTAGAATTG 60.347 42.308 0.00 0.00 45.96 2.32
1896 2029 4.567537 GCATATGGGCACATGAATAGGGTA 60.568 45.833 12.99 0.00 37.97 3.69
1899 2032 3.693807 AGCATATGGGCACATGAATAGG 58.306 45.455 12.99 0.00 37.97 2.57
1901 2034 3.827876 CCAAGCATATGGGCACATGAATA 59.172 43.478 12.99 0.00 37.97 1.75
1962 2095 4.482990 AGGGAACTCCAAAATGAACACAT 58.517 39.130 0.00 0.00 32.90 3.21
2052 2185 3.554324 GCTCTTGCGGACATAATAAACGA 59.446 43.478 0.00 0.00 0.00 3.85
2053 2186 3.555956 AGCTCTTGCGGACATAATAAACG 59.444 43.478 0.00 0.00 45.42 3.60
2091 2224 4.915194 ACTATTATATTTTGGGACGGGGGA 59.085 41.667 0.00 0.00 0.00 4.81
2137 2270 2.010582 GCTACTGCTCCCTCTGTCCG 62.011 65.000 0.00 0.00 36.03 4.79
2161 2294 5.068460 CCATCGACAAATTAAAGGGGCATAA 59.932 40.000 0.00 0.00 0.00 1.90
2195 2328 1.372501 TTCCTCCTCCCCCTTTCTTG 58.627 55.000 0.00 0.00 0.00 3.02
2208 2341 6.404623 GCCCAAAAATTAAATGCAATTCCTCC 60.405 38.462 0.00 0.00 33.67 4.30
2246 2379 1.597663 GCGGCAGCAATATAACTCGTT 59.402 47.619 3.18 0.00 44.35 3.85
2285 2418 1.407936 CACAACACAATTGGTCCCCA 58.592 50.000 10.83 0.00 0.00 4.96
2286 2419 0.678950 CCACAACACAATTGGTCCCC 59.321 55.000 10.83 0.00 0.00 4.81
2287 2420 0.678950 CCCACAACACAATTGGTCCC 59.321 55.000 10.83 0.00 0.00 4.46
2288 2421 0.033366 GCCCACAACACAATTGGTCC 59.967 55.000 10.83 0.00 0.00 4.46
2289 2422 1.039856 AGCCCACAACACAATTGGTC 58.960 50.000 10.83 0.00 0.00 4.02
2290 2423 1.412343 GAAGCCCACAACACAATTGGT 59.588 47.619 10.83 2.02 0.00 3.67
2291 2424 1.411977 TGAAGCCCACAACACAATTGG 59.588 47.619 10.83 1.35 0.00 3.16
2292 2425 2.886862 TGAAGCCCACAACACAATTG 57.113 45.000 3.24 3.24 0.00 2.32
2293 2426 2.037511 CCATGAAGCCCACAACACAATT 59.962 45.455 0.00 0.00 0.00 2.32
2294 2427 1.619827 CCATGAAGCCCACAACACAAT 59.380 47.619 0.00 0.00 0.00 2.71
2295 2428 1.039068 CCATGAAGCCCACAACACAA 58.961 50.000 0.00 0.00 0.00 3.33
2296 2429 0.106268 ACCATGAAGCCCACAACACA 60.106 50.000 0.00 0.00 0.00 3.72
2297 2430 0.314935 CACCATGAAGCCCACAACAC 59.685 55.000 0.00 0.00 0.00 3.32
2298 2431 0.106268 ACACCATGAAGCCCACAACA 60.106 50.000 0.00 0.00 0.00 3.33
2299 2432 1.039856 AACACCATGAAGCCCACAAC 58.960 50.000 0.00 0.00 0.00 3.32
2300 2433 1.039068 CAACACCATGAAGCCCACAA 58.961 50.000 0.00 0.00 0.00 3.33
2337 2494 4.328536 TGCACGGTACTATGGACAAAAAT 58.671 39.130 0.00 0.00 0.00 1.82
2349 2506 3.120792 CGCAGTTATTATGCACGGTACT 58.879 45.455 0.00 0.00 44.05 2.73
2440 2597 8.913487 ATAGTTAGATGCATTCATGATTCACA 57.087 30.769 0.00 0.00 31.96 3.58
2498 2661 8.996271 CAGCATACATGATGACAACATATACTT 58.004 33.333 0.00 0.00 46.44 2.24
2500 2663 8.315391 ACAGCATACATGATGACAACATATAC 57.685 34.615 13.98 0.00 46.44 1.47
2580 2743 4.062490 ACCTCAGAAACTAGCCCTAGAA 57.938 45.455 9.20 0.00 36.97 2.10
2625 2788 8.726068 CATCCACCTTTTTAAAAACAAAGTGTT 58.274 29.630 9.31 3.49 43.41 3.32
2720 2883 8.432013 AGAAATACATACTCCTGAATATGCACA 58.568 33.333 0.00 0.00 32.92 4.57
2842 3005 5.177696 GGGACAGCGTTTAGATCACAATATC 59.822 44.000 0.00 0.00 0.00 1.63
2929 3521 7.535997 ACTTAAGACAACAAAGTTGGAAAGAC 58.464 34.615 10.09 0.11 29.25 3.01
3140 3734 1.003580 AGCACCAGATCACCGTGAAAT 59.996 47.619 5.07 0.00 0.00 2.17
3429 4023 4.681781 GCATGCTCCACTTCTGTAGTACAT 60.682 45.833 11.37 0.00 34.56 2.29
3436 4033 0.671781 GACGCATGCTCCACTTCTGT 60.672 55.000 17.13 2.12 0.00 3.41
3452 4049 2.961526 AGTATAACACCTGCCAGACG 57.038 50.000 0.00 0.00 0.00 4.18
3531 4130 9.163899 GTTCGATATAGTAGTATCTGGATGACA 57.836 37.037 0.00 0.00 0.00 3.58
3544 4143 8.411683 ACCAAGTTACCAAGTTCGATATAGTAG 58.588 37.037 0.00 0.00 0.00 2.57
3545 4144 8.297470 ACCAAGTTACCAAGTTCGATATAGTA 57.703 34.615 0.00 0.00 0.00 1.82
3546 4145 7.179076 ACCAAGTTACCAAGTTCGATATAGT 57.821 36.000 0.00 0.00 0.00 2.12
3548 4147 8.752187 AGTTACCAAGTTACCAAGTTCGATATA 58.248 33.333 0.00 0.00 0.00 0.86
3550 4149 6.996509 AGTTACCAAGTTACCAAGTTCGATA 58.003 36.000 0.00 0.00 0.00 2.92
3551 4150 5.861727 AGTTACCAAGTTACCAAGTTCGAT 58.138 37.500 0.00 0.00 0.00 3.59
3554 4153 5.066764 TGCAAGTTACCAAGTTACCAAGTTC 59.933 40.000 0.00 0.00 0.00 3.01
3555 4154 4.951094 TGCAAGTTACCAAGTTACCAAGTT 59.049 37.500 0.00 0.00 0.00 2.66
3556 4155 4.528920 TGCAAGTTACCAAGTTACCAAGT 58.471 39.130 0.00 0.00 0.00 3.16
3557 4156 4.556699 GCTGCAAGTTACCAAGTTACCAAG 60.557 45.833 0.00 0.00 35.30 3.61
3558 4157 3.316868 GCTGCAAGTTACCAAGTTACCAA 59.683 43.478 0.00 0.00 35.30 3.67
3559 4158 2.882137 GCTGCAAGTTACCAAGTTACCA 59.118 45.455 0.00 0.00 35.30 3.25
3560 4159 2.228103 GGCTGCAAGTTACCAAGTTACC 59.772 50.000 0.50 0.00 35.30 2.85
3561 4160 3.058224 CAGGCTGCAAGTTACCAAGTTAC 60.058 47.826 0.00 0.00 35.30 2.50
3562 4161 3.146066 CAGGCTGCAAGTTACCAAGTTA 58.854 45.455 0.00 0.00 35.30 2.24
3563 4162 1.956477 CAGGCTGCAAGTTACCAAGTT 59.044 47.619 0.00 0.00 35.30 2.66
3564 4163 1.142870 TCAGGCTGCAAGTTACCAAGT 59.857 47.619 10.34 0.00 35.30 3.16
3565 4164 1.537202 GTCAGGCTGCAAGTTACCAAG 59.463 52.381 10.34 0.00 35.30 3.61
3566 4165 1.604604 GTCAGGCTGCAAGTTACCAA 58.395 50.000 10.34 0.00 35.30 3.67
3567 4166 0.250727 GGTCAGGCTGCAAGTTACCA 60.251 55.000 10.34 0.00 35.30 3.25
3568 4167 0.036875 AGGTCAGGCTGCAAGTTACC 59.963 55.000 10.34 11.15 35.30 2.85
3575 4174 1.484038 AAAACAAAGGTCAGGCTGCA 58.516 45.000 10.34 0.00 0.00 4.41
3577 4176 2.099098 ACGAAAAACAAAGGTCAGGCTG 59.901 45.455 8.58 8.58 0.00 4.85
3578 4177 2.375146 ACGAAAAACAAAGGTCAGGCT 58.625 42.857 0.00 0.00 0.00 4.58
3610 4209 3.641437 TGAAGCATGTTTACAACTGCC 57.359 42.857 0.00 0.00 36.71 4.85
3622 4221 4.915667 CGGCTATTTGAATGATGAAGCATG 59.084 41.667 0.00 0.00 0.00 4.06
3855 4454 1.403814 TGTCTCTATGGCCTTCTCCG 58.596 55.000 3.32 0.00 0.00 4.63
3940 4539 3.683802 GGAATCATCATCATGGGAGTCC 58.316 50.000 9.86 9.86 37.36 3.85
3961 4560 1.613925 TCTGACCTCTCTGTGTTTCCG 59.386 52.381 0.00 0.00 0.00 4.30
3994 4593 3.300934 ATCTGCGCGACTGGCTTGA 62.301 57.895 12.10 0.00 40.44 3.02
4054 4653 6.035866 CACTTTTAGTCTCAGCATCAGATGAC 59.964 42.308 15.12 5.71 34.77 3.06
4077 4676 2.237143 TCTCCAGTTGGATGGACATCAC 59.763 50.000 13.72 4.93 44.56 3.06
4088 4687 2.158755 GGGGTACATCATCTCCAGTTGG 60.159 54.545 0.00 0.00 0.00 3.77
4192 4791 1.244019 CCACTGCCCCCTTTTTCTCG 61.244 60.000 0.00 0.00 0.00 4.04
4297 4896 1.369091 CCGCTGGTATGTTGCCTGTC 61.369 60.000 0.00 0.00 0.00 3.51
4404 5003 1.340405 CCCCTTCATGTTCAGACCCAG 60.340 57.143 0.00 0.00 0.00 4.45
4534 5133 1.264288 GCACTCGTTTCTGAACCCTTG 59.736 52.381 0.00 0.00 31.93 3.61
4553 5152 2.126071 TGACGCCTCGTTAGCTGC 60.126 61.111 0.00 0.00 41.37 5.25
4610 5209 2.049063 GTCAGCGCGAACCTCTGT 60.049 61.111 12.10 0.00 0.00 3.41
4646 5245 3.732938 CCCCTGGGAGTTCTCTGG 58.267 66.667 16.20 0.00 37.50 3.86
4751 5356 2.885135 TCCTGATCACCATTGCTTGT 57.115 45.000 0.00 0.00 0.00 3.16
4771 5376 8.585471 ATGTGTTGGTTTCAATCTTGATATCT 57.415 30.769 3.98 0.00 37.00 1.98
4806 5411 1.733912 TCTGATGTTCATTGTGCTCGC 59.266 47.619 0.00 0.00 0.00 5.03
4809 5414 2.486982 GCACTCTGATGTTCATTGTGCT 59.513 45.455 18.90 0.00 44.40 4.40
4843 5448 4.735132 TTTGAGCCGCTCGACCCG 62.735 66.667 15.58 0.00 32.35 5.28
4865 5470 0.954452 CCAGTTTGTTCAGGGTCAGC 59.046 55.000 0.00 0.00 0.00 4.26
4869 5474 4.081697 CAGTTTTTCCAGTTTGTTCAGGGT 60.082 41.667 0.00 0.00 0.00 4.34
4894 5499 2.084546 GTTTGGTGCTATCACTGGGTC 58.915 52.381 0.00 0.00 42.72 4.46
4918 5523 2.222796 CGTATGCTGAACAATGTCCGTG 60.223 50.000 0.00 0.00 0.00 4.94
5002 5607 4.828829 ACCAACTAAAGGATGTAACCTCG 58.171 43.478 0.00 0.00 39.62 4.63
5169 5775 1.342555 CAGCGTGGTATCGAACGAAA 58.657 50.000 11.33 0.00 42.32 3.46
5252 5858 6.183360 ACAGAGAAAACAACACCAAACATAGG 60.183 38.462 0.00 0.00 0.00 2.57
5315 5921 9.826574 GTCACAACATATACCATACTTTTCCTA 57.173 33.333 0.00 0.00 0.00 2.94
5334 5940 3.969117 TGCAATCTCACAAGTCACAAC 57.031 42.857 0.00 0.00 0.00 3.32
5335 5941 4.023792 GTGATGCAATCTCACAAGTCACAA 60.024 41.667 12.91 0.00 45.81 3.33
5336 5942 3.499537 GTGATGCAATCTCACAAGTCACA 59.500 43.478 12.91 0.00 45.81 3.58
5337 5943 3.424039 CGTGATGCAATCTCACAAGTCAC 60.424 47.826 16.84 9.13 45.81 3.67
5338 5944 2.738314 CGTGATGCAATCTCACAAGTCA 59.262 45.455 16.84 0.00 45.81 3.41
5339 5945 2.094894 CCGTGATGCAATCTCACAAGTC 59.905 50.000 16.84 0.00 45.81 3.01
5340 5946 2.079158 CCGTGATGCAATCTCACAAGT 58.921 47.619 16.84 0.00 45.81 3.16
5341 5947 2.079158 ACCGTGATGCAATCTCACAAG 58.921 47.619 16.84 10.70 45.81 3.16
5357 5963 4.141914 TGGTAAAAAGGCAAAATGAACCGT 60.142 37.500 0.00 0.00 0.00 4.83
5358 5964 4.372656 TGGTAAAAAGGCAAAATGAACCG 58.627 39.130 0.00 0.00 0.00 4.44
5359 5965 6.262049 ACATTGGTAAAAAGGCAAAATGAACC 59.738 34.615 0.00 0.00 0.00 3.62
5362 5968 5.994668 GGACATTGGTAAAAAGGCAAAATGA 59.005 36.000 0.00 0.00 0.00 2.57
5363 5969 5.181056 GGGACATTGGTAAAAAGGCAAAATG 59.819 40.000 0.00 0.00 0.00 2.32
5364 5970 5.073008 AGGGACATTGGTAAAAAGGCAAAAT 59.927 36.000 0.00 0.00 0.00 1.82
5365 5971 4.410555 AGGGACATTGGTAAAAAGGCAAAA 59.589 37.500 0.00 0.00 0.00 2.44
5366 5972 3.970640 AGGGACATTGGTAAAAAGGCAAA 59.029 39.130 0.00 0.00 0.00 3.68
5367 5973 3.582164 AGGGACATTGGTAAAAAGGCAA 58.418 40.909 0.00 0.00 0.00 4.52
5368 5974 3.252554 AGGGACATTGGTAAAAAGGCA 57.747 42.857 0.00 0.00 0.00 4.75
5369 5975 5.186992 ACAATAGGGACATTGGTAAAAAGGC 59.813 40.000 1.36 0.00 39.71 4.35
5370 5976 6.663523 AGACAATAGGGACATTGGTAAAAAGG 59.336 38.462 1.36 0.00 39.71 3.11
5379 6013 5.887598 TCAATCCAAGACAATAGGGACATTG 59.112 40.000 0.00 0.00 40.93 2.82
5381 6015 5.715439 TCAATCCAAGACAATAGGGACAT 57.285 39.130 0.00 0.00 31.04 3.06
5386 6020 6.604795 AGGAACAATCAATCCAAGACAATAGG 59.395 38.462 0.00 0.00 38.23 2.57
5390 6024 7.004086 ACTAAGGAACAATCAATCCAAGACAA 58.996 34.615 0.00 0.00 38.23 3.18
5393 6027 5.874810 CGACTAAGGAACAATCAATCCAAGA 59.125 40.000 0.00 0.00 38.23 3.02
5402 6036 4.495422 TCTGAAGCGACTAAGGAACAATC 58.505 43.478 0.00 0.00 0.00 2.67
5403 6037 4.537135 TCTGAAGCGACTAAGGAACAAT 57.463 40.909 0.00 0.00 0.00 2.71
5421 6055 1.645034 ATCCACGCAATCGACTTCTG 58.355 50.000 0.00 0.00 39.41 3.02
5427 6061 2.112198 GCCCAATCCACGCAATCGA 61.112 57.895 0.00 0.00 39.41 3.59
5430 6064 2.053865 CCAGCCCAATCCACGCAAT 61.054 57.895 0.00 0.00 0.00 3.56
5454 6088 4.805219 AGTAAAATCGGCAACAAATGGTC 58.195 39.130 0.00 0.00 0.00 4.02
5455 6089 4.864704 AGTAAAATCGGCAACAAATGGT 57.135 36.364 0.00 0.00 0.00 3.55
5456 6090 4.798387 GCTAGTAAAATCGGCAACAAATGG 59.202 41.667 0.00 0.00 0.00 3.16
5457 6091 5.398169 TGCTAGTAAAATCGGCAACAAATG 58.602 37.500 0.00 0.00 0.00 2.32
5458 6092 5.637006 TGCTAGTAAAATCGGCAACAAAT 57.363 34.783 0.00 0.00 0.00 2.32
5459 6093 5.637006 ATGCTAGTAAAATCGGCAACAAA 57.363 34.783 0.00 0.00 36.49 2.83
5460 6094 5.637006 AATGCTAGTAAAATCGGCAACAA 57.363 34.783 0.00 0.00 36.49 2.83
5461 6095 5.220777 GCTAATGCTAGTAAAATCGGCAACA 60.221 40.000 0.00 0.00 36.49 3.33
5462 6096 5.205565 GCTAATGCTAGTAAAATCGGCAAC 58.794 41.667 0.00 0.00 36.49 4.17
5463 6097 5.418310 GCTAATGCTAGTAAAATCGGCAA 57.582 39.130 0.00 0.00 36.49 4.52
5478 6112 4.176271 GGAAAACATTGGTCAGCTAATGC 58.824 43.478 6.82 0.00 44.30 3.56
5479 6113 4.381932 GGGGAAAACATTGGTCAGCTAATG 60.382 45.833 5.56 5.56 45.43 1.90
5480 6114 3.769300 GGGGAAAACATTGGTCAGCTAAT 59.231 43.478 0.00 0.00 0.00 1.73
5481 6115 3.161866 GGGGAAAACATTGGTCAGCTAA 58.838 45.455 0.00 0.00 0.00 3.09
5482 6116 2.378547 AGGGGAAAACATTGGTCAGCTA 59.621 45.455 0.00 0.00 0.00 3.32
5483 6117 1.147817 AGGGGAAAACATTGGTCAGCT 59.852 47.619 0.00 0.00 0.00 4.24
5484 6118 1.632589 AGGGGAAAACATTGGTCAGC 58.367 50.000 0.00 0.00 0.00 4.26
5485 6119 3.763897 CCTTAGGGGAAAACATTGGTCAG 59.236 47.826 0.00 0.00 37.23 3.51
5486 6120 3.773560 CCTTAGGGGAAAACATTGGTCA 58.226 45.455 0.00 0.00 37.23 4.02
5487 6121 2.496070 GCCTTAGGGGAAAACATTGGTC 59.504 50.000 0.00 0.00 37.23 4.02
5488 6122 2.111792 AGCCTTAGGGGAAAACATTGGT 59.888 45.455 0.00 0.00 37.23 3.67
5489 6123 2.820178 AGCCTTAGGGGAAAACATTGG 58.180 47.619 0.00 0.00 37.23 3.16
5490 6124 3.377172 CGTAGCCTTAGGGGAAAACATTG 59.623 47.826 0.00 0.00 37.23 2.82
5491 6125 3.264964 TCGTAGCCTTAGGGGAAAACATT 59.735 43.478 0.00 0.00 37.23 2.71
5492 6126 2.841881 TCGTAGCCTTAGGGGAAAACAT 59.158 45.455 0.00 0.00 37.23 2.71
5493 6127 2.027837 GTCGTAGCCTTAGGGGAAAACA 60.028 50.000 0.00 0.00 37.23 2.83
5494 6128 2.625737 GTCGTAGCCTTAGGGGAAAAC 58.374 52.381 0.00 0.00 37.23 2.43
5495 6129 1.556451 GGTCGTAGCCTTAGGGGAAAA 59.444 52.381 0.00 0.00 37.23 2.29
5496 6130 1.197812 GGTCGTAGCCTTAGGGGAAA 58.802 55.000 0.00 0.00 37.23 3.13
5497 6131 0.337428 AGGTCGTAGCCTTAGGGGAA 59.663 55.000 0.00 0.00 34.71 3.97
5508 6142 2.299521 CTGGAGAACCCTAGGTCGTAG 58.700 57.143 8.29 0.00 33.12 3.51
5620 6254 4.193334 CCCTCGATCAGTGCGCGA 62.193 66.667 12.10 6.91 0.00 5.87
5627 6261 1.490574 AGGAAGGAACCCTCGATCAG 58.509 55.000 0.00 0.00 30.89 2.90
5628 6262 2.840640 TAGGAAGGAACCCTCGATCA 57.159 50.000 0.00 0.00 35.30 2.92
5633 6267 3.244249 CCGATCAATAGGAAGGAACCCTC 60.244 52.174 0.00 0.00 35.30 4.30
5636 6270 2.495084 GCCGATCAATAGGAAGGAACC 58.505 52.381 0.00 0.00 31.28 3.62
5638 6272 1.070134 CGGCCGATCAATAGGAAGGAA 59.930 52.381 24.07 0.00 31.28 3.36
5643 6277 1.112916 TCAGCGGCCGATCAATAGGA 61.113 55.000 33.48 12.82 0.00 2.94
5645 6279 1.354040 GATCAGCGGCCGATCAATAG 58.646 55.000 33.48 10.98 39.30 1.73
5646 6280 0.388520 CGATCAGCGGCCGATCAATA 60.389 55.000 33.48 8.20 39.43 1.90
5647 6281 1.665916 CGATCAGCGGCCGATCAAT 60.666 57.895 33.48 19.18 39.43 2.57
5648 6282 2.279451 CGATCAGCGGCCGATCAA 60.279 61.111 33.48 14.36 39.43 2.57
5689 6323 1.656652 CCATTAGCAGACTTCCACGG 58.343 55.000 0.00 0.00 0.00 4.94
5690 6324 1.009829 GCCATTAGCAGACTTCCACG 58.990 55.000 0.00 0.00 42.97 4.94
5718 6354 3.663176 CACCAGCAGTTGCACCCG 61.663 66.667 6.90 0.00 45.16 5.28
5724 6360 0.607489 CTTCCCTCCACCAGCAGTTG 60.607 60.000 0.00 0.00 0.00 3.16
5727 6363 1.492133 TTCCTTCCCTCCACCAGCAG 61.492 60.000 0.00 0.00 0.00 4.24
5732 6368 1.301293 CTGCTTCCTTCCCTCCACC 59.699 63.158 0.00 0.00 0.00 4.61
5794 6430 4.449743 TCCCAAACTAAATTGTCTCGTTCG 59.550 41.667 0.00 0.00 0.00 3.95
5799 6435 6.180472 TCATCCTCCCAAACTAAATTGTCTC 58.820 40.000 0.00 0.00 0.00 3.36
5826 6462 3.265221 AGGTCTTTCATCTGGCTCATCAA 59.735 43.478 0.00 0.00 0.00 2.57
5830 6466 3.840666 ACTTAGGTCTTTCATCTGGCTCA 59.159 43.478 0.00 0.00 0.00 4.26
5842 6478 3.233355 CGCAAGCCACTTAGGTCTT 57.767 52.632 0.00 0.00 40.61 3.01
5863 6499 6.539173 TGATTTCTCTGTAAAAACCCTAGCA 58.461 36.000 0.00 0.00 0.00 3.49
5875 6511 7.675161 TCCTTGACCATATGATTTCTCTGTA 57.325 36.000 3.65 0.00 0.00 2.74
5896 6532 4.841617 TCCGCGATCAGGGCTCCT 62.842 66.667 8.23 0.00 0.00 3.69
5899 6535 3.157252 ATGTCCGCGATCAGGGCT 61.157 61.111 8.23 0.00 33.78 5.19
5932 6568 2.746904 CCAAATTACATCACACGCTGGA 59.253 45.455 0.00 0.00 0.00 3.86
5939 6575 3.342377 TCTCCGCCAAATTACATCACA 57.658 42.857 0.00 0.00 0.00 3.58
5947 6583 4.983671 GGAGTTAATTCTCCGCCAAATT 57.016 40.909 0.00 0.00 43.42 1.82
5997 6633 1.260544 AGCTTTGTTCCAATCTGCCC 58.739 50.000 0.00 0.00 0.00 5.36
6019 6655 0.119155 AGTCCCATGGTCCTTGAGGA 59.881 55.000 11.73 8.24 43.08 3.71
6021 6657 1.630369 TGAAGTCCCATGGTCCTTGAG 59.370 52.381 15.71 0.00 0.00 3.02
6027 6663 0.681243 GCCCTTGAAGTCCCATGGTC 60.681 60.000 11.73 1.67 31.52 4.02
6051 6687 4.201841 CGTCATATTCTGCAATCACAAGCA 60.202 41.667 0.00 0.00 39.25 3.91
6087 6724 3.427573 TCTATCCAGTTTCACCGTCTCA 58.572 45.455 0.00 0.00 0.00 3.27
6138 6775 3.310774 CACGCTTCAGAACCATATCAAGG 59.689 47.826 0.00 0.00 0.00 3.61
6140 6777 4.200838 TCACGCTTCAGAACCATATCAA 57.799 40.909 0.00 0.00 0.00 2.57
6150 6787 3.558006 TCACGAAATTTTCACGCTTCAGA 59.442 39.130 9.66 0.00 0.00 3.27
6176 6813 0.101040 CCCAATACGTGCTGCCATTG 59.899 55.000 0.00 0.00 0.00 2.82
6195 6832 3.817709 ATCTGAAGCTCTAGCACTTCC 57.182 47.619 17.07 5.27 45.16 3.46
6225 6862 2.292828 ACTCTCCCACAAACCCATTG 57.707 50.000 0.00 0.00 44.95 2.82
6237 6874 5.009610 CACTCTAGCTCTGATAAACTCTCCC 59.990 48.000 0.00 0.00 0.00 4.30
6249 6886 0.805322 CAAGCCGCACTCTAGCTCTG 60.805 60.000 0.00 0.00 35.30 3.35
6324 6961 8.157476 AGCTTCTCAAACTTAACCTGATAGAAA 58.843 33.333 0.00 0.00 0.00 2.52
6349 6986 2.880890 AGTTGTAGCAGAAAACTGGCAG 59.119 45.455 14.16 14.16 33.01 4.85
6354 6991 3.877508 GACCACAGTTGTAGCAGAAAACT 59.122 43.478 0.00 0.00 34.52 2.66
6357 6994 3.838244 AGACCACAGTTGTAGCAGAAA 57.162 42.857 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.