Multiple sequence alignment - TraesCS7A01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G355300 chr7A 100.000 3225 0 0 1 3225 520061612 520058388 0.000000e+00 5956.0
1 TraesCS7A01G355300 chr7A 89.097 642 36 9 2584 3221 603528114 603528725 0.000000e+00 767.0
2 TraesCS7A01G355300 chr7A 89.944 537 35 7 2686 3221 647911463 647910945 0.000000e+00 675.0
3 TraesCS7A01G355300 chr7D 85.615 1432 97 49 38 1440 475872851 475874202 0.000000e+00 1402.0
4 TraesCS7A01G355300 chr7D 90.000 880 68 13 1495 2358 475874338 475875213 0.000000e+00 1120.0
5 TraesCS7A01G355300 chr7B 91.948 770 49 7 1599 2358 500170350 500171116 0.000000e+00 1066.0
6 TraesCS7A01G355300 chr7B 84.277 795 59 25 38 821 500168400 500169139 0.000000e+00 715.0
7 TraesCS7A01G355300 chr7B 84.322 472 34 15 965 1414 500169604 500170057 2.970000e-115 425.0
8 TraesCS7A01G355300 chr7B 100.000 37 0 0 1404 1440 500170071 500170107 5.770000e-08 69.4
9 TraesCS7A01G355300 chr5A 90.141 639 32 6 2584 3221 5292033 5292641 0.000000e+00 802.0
10 TraesCS7A01G355300 chr5A 88.943 407 18 8 2582 2988 513913111 513913490 8.090000e-131 477.0
11 TraesCS7A01G355300 chr5A 82.653 196 32 2 1024 1218 704338345 704338539 4.280000e-39 172.0
12 TraesCS7A01G355300 chr4A 90.728 604 31 3 2584 3185 616208915 616209495 0.000000e+00 782.0
13 TraesCS7A01G355300 chr4A 89.967 608 34 5 2584 3190 511224705 511225286 0.000000e+00 760.0
14 TraesCS7A01G355300 chr4A 92.644 503 24 4 2686 3187 134204399 134203909 0.000000e+00 712.0
15 TraesCS7A01G355300 chr4A 90.930 430 15 2 2577 3006 586443923 586443518 1.010000e-154 556.0
16 TraesCS7A01G355300 chr4A 88.947 380 19 1 2584 2963 606792165 606791809 6.350000e-122 448.0
17 TraesCS7A01G355300 chr4A 79.845 516 66 18 2586 3101 501467132 501467609 3.080000e-90 342.0
18 TraesCS7A01G355300 chr3A 90.289 484 23 2 2584 3067 175810671 175811130 2.130000e-171 612.0
19 TraesCS7A01G355300 chr3A 86.696 451 33 5 2582 3030 27657759 27658184 2.910000e-130 475.0
20 TraesCS7A01G355300 chr3A 89.426 331 24 8 2893 3221 562878649 562878328 1.080000e-109 407.0
21 TraesCS7A01G355300 chr3A 89.058 329 29 6 2893 3221 27657993 27658314 5.010000e-108 401.0
22 TraesCS7A01G355300 chr2B 79.192 668 74 31 2579 3221 381303481 381304108 1.390000e-108 403.0
23 TraesCS7A01G355300 chr2B 91.450 269 20 2 1680 1948 365673 365408 1.830000e-97 366.0
24 TraesCS7A01G355300 chr2B 89.062 256 22 4 2038 2291 365397 365146 2.420000e-81 313.0
25 TraesCS7A01G355300 chr2A 87.986 283 11 1 2584 2866 52141838 52141579 2.420000e-81 313.0
26 TraesCS7A01G355300 chr3B 83.092 207 30 5 1014 1218 799860598 799860395 1.980000e-42 183.0
27 TraesCS7A01G355300 chr3B 82.812 192 31 2 1035 1225 412595968 412596158 1.540000e-38 171.0
28 TraesCS7A01G355300 chr3B 75.942 345 65 15 1644 1985 799982900 799982571 9.260000e-36 161.0
29 TraesCS7A01G355300 chrUn 83.854 192 30 1 1028 1218 109048713 109048522 7.110000e-42 182.0
30 TraesCS7A01G355300 chr4D 81.818 209 37 1 1010 1218 506340153 506339946 1.190000e-39 174.0
31 TraesCS7A01G355300 chr3D 82.812 192 31 2 1035 1225 308985786 308985596 1.540000e-38 171.0
32 TraesCS7A01G355300 chr4B 81.517 211 30 5 1014 1218 662458930 662458723 7.160000e-37 165.0
33 TraesCS7A01G355300 chr5B 93.750 48 3 0 1688 1735 452124481 452124434 4.460000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G355300 chr7A 520058388 520061612 3224 True 5956.00 5956 100.00000 1 3225 1 chr7A.!!$R1 3224
1 TraesCS7A01G355300 chr7A 603528114 603528725 611 False 767.00 767 89.09700 2584 3221 1 chr7A.!!$F1 637
2 TraesCS7A01G355300 chr7A 647910945 647911463 518 True 675.00 675 89.94400 2686 3221 1 chr7A.!!$R2 535
3 TraesCS7A01G355300 chr7D 475872851 475875213 2362 False 1261.00 1402 87.80750 38 2358 2 chr7D.!!$F1 2320
4 TraesCS7A01G355300 chr7B 500168400 500171116 2716 False 568.85 1066 90.13675 38 2358 4 chr7B.!!$F1 2320
5 TraesCS7A01G355300 chr5A 5292033 5292641 608 False 802.00 802 90.14100 2584 3221 1 chr5A.!!$F1 637
6 TraesCS7A01G355300 chr4A 616208915 616209495 580 False 782.00 782 90.72800 2584 3185 1 chr4A.!!$F3 601
7 TraesCS7A01G355300 chr4A 511224705 511225286 581 False 760.00 760 89.96700 2584 3190 1 chr4A.!!$F2 606
8 TraesCS7A01G355300 chr3A 27657759 27658314 555 False 438.00 475 87.87700 2582 3221 2 chr3A.!!$F2 639
9 TraesCS7A01G355300 chr2B 381303481 381304108 627 False 403.00 403 79.19200 2579 3221 1 chr2B.!!$F1 642
10 TraesCS7A01G355300 chr2B 365146 365673 527 True 339.50 366 90.25600 1680 2291 2 chr2B.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.174389 AAACAAATGTGTGGTGCGCA 59.826 45.0 5.66 5.66 38.27 6.09 F
36 37 0.174389 AACAAATGTGTGGTGCGCAA 59.826 45.0 14.00 0.00 41.37 4.85 F
1276 1631 0.179032 TGTGCTGTCCATTTCCGTGT 60.179 50.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 1465 0.111704 CGACGACGAAGCTGTTGTTG 60.112 55.0 0.00 0.0 42.66 3.33 R
1340 1721 0.248054 CGCACGCACACAAGAACTTT 60.248 50.0 0.00 0.0 0.00 2.66 R
2409 2945 0.028505 TTATCGTCGACCGTAGCTGC 59.971 55.0 10.58 0.0 37.94 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.865629 TCGCAGAGGAGGAGGAAA 57.134 55.556 0.00 0.00 0.00 3.13
19 20 2.277858 TCGCAGAGGAGGAGGAAAC 58.722 57.895 0.00 0.00 0.00 2.78
20 21 0.541998 TCGCAGAGGAGGAGGAAACA 60.542 55.000 0.00 0.00 0.00 2.83
21 22 0.321671 CGCAGAGGAGGAGGAAACAA 59.678 55.000 0.00 0.00 0.00 2.83
22 23 1.270839 CGCAGAGGAGGAGGAAACAAA 60.271 52.381 0.00 0.00 0.00 2.83
23 24 2.616510 CGCAGAGGAGGAGGAAACAAAT 60.617 50.000 0.00 0.00 0.00 2.32
24 25 2.751806 GCAGAGGAGGAGGAAACAAATG 59.248 50.000 0.00 0.00 0.00 2.32
25 26 3.812167 GCAGAGGAGGAGGAAACAAATGT 60.812 47.826 0.00 0.00 0.00 2.71
26 27 3.755378 CAGAGGAGGAGGAAACAAATGTG 59.245 47.826 0.00 0.00 0.00 3.21
27 28 3.395941 AGAGGAGGAGGAAACAAATGTGT 59.604 43.478 0.00 0.00 40.75 3.72
28 29 3.490348 AGGAGGAGGAAACAAATGTGTG 58.510 45.455 0.00 0.00 38.27 3.82
29 30 2.558359 GGAGGAGGAAACAAATGTGTGG 59.442 50.000 0.00 0.00 38.27 4.17
30 31 3.222603 GAGGAGGAAACAAATGTGTGGT 58.777 45.455 0.00 0.00 38.27 4.16
31 32 2.958355 AGGAGGAAACAAATGTGTGGTG 59.042 45.455 0.00 0.00 38.27 4.17
32 33 2.545742 GGAGGAAACAAATGTGTGGTGC 60.546 50.000 0.00 0.00 38.27 5.01
33 34 1.066908 AGGAAACAAATGTGTGGTGCG 59.933 47.619 0.00 0.00 38.27 5.34
34 35 0.852136 GAAACAAATGTGTGGTGCGC 59.148 50.000 0.00 0.00 38.27 6.09
35 36 0.174389 AAACAAATGTGTGGTGCGCA 59.826 45.000 5.66 5.66 38.27 6.09
36 37 0.174389 AACAAATGTGTGGTGCGCAA 59.826 45.000 14.00 0.00 41.37 4.85
120 122 3.838271 GCTGGCGATCTCGGTGGA 61.838 66.667 1.34 0.00 40.23 4.02
121 123 2.892640 CTGGCGATCTCGGTGGAA 59.107 61.111 1.34 0.00 40.23 3.53
150 152 3.414700 GTTGCCCTCGTCGCTGTG 61.415 66.667 0.00 0.00 0.00 3.66
194 196 3.334891 TGCACGGGTGGGCCTAAT 61.335 61.111 4.53 0.00 34.45 1.73
195 197 2.044352 GCACGGGTGGGCCTAATT 60.044 61.111 4.53 0.00 34.45 1.40
196 198 1.225148 GCACGGGTGGGCCTAATTA 59.775 57.895 4.53 0.00 34.45 1.40
252 260 2.128367 ACCAAATTTCCGTTTGCGTC 57.872 45.000 0.00 0.00 37.67 5.19
256 264 3.231160 CAAATTTCCGTTTGCGTCCTAC 58.769 45.455 0.00 0.00 32.90 3.18
257 265 2.467566 ATTTCCGTTTGCGTCCTACT 57.532 45.000 0.00 0.00 36.15 2.57
258 266 1.787012 TTTCCGTTTGCGTCCTACTC 58.213 50.000 0.00 0.00 36.15 2.59
259 267 0.387622 TTCCGTTTGCGTCCTACTCG 60.388 55.000 0.00 0.00 36.15 4.18
303 317 2.982130 GACGAGTCTGGCCATGGT 59.018 61.111 14.67 0.00 0.00 3.55
353 367 0.184451 ACCCATCCCATAGCTGCAAG 59.816 55.000 1.02 0.00 0.00 4.01
354 368 0.538977 CCCATCCCATAGCTGCAAGG 60.539 60.000 1.02 0.00 0.00 3.61
355 369 0.475475 CCATCCCATAGCTGCAAGGA 59.525 55.000 1.02 2.28 0.00 3.36
367 381 1.168407 TGCAAGGACAAGCAGCACTC 61.168 55.000 0.00 0.00 35.51 3.51
377 391 0.480252 AGCAGCACTCCTCCCTTTTT 59.520 50.000 0.00 0.00 0.00 1.94
378 392 0.600057 GCAGCACTCCTCCCTTTTTG 59.400 55.000 0.00 0.00 0.00 2.44
379 393 0.600057 CAGCACTCCTCCCTTTTTGC 59.400 55.000 0.00 0.00 0.00 3.68
380 394 0.480252 AGCACTCCTCCCTTTTTGCT 59.520 50.000 0.00 0.00 35.49 3.91
381 395 0.600057 GCACTCCTCCCTTTTTGCTG 59.400 55.000 0.00 0.00 0.00 4.41
415 429 1.298157 CCAATCTCTTCGGTTGCGCA 61.298 55.000 5.66 5.66 0.00 6.09
416 430 0.516877 CAATCTCTTCGGTTGCGCAA 59.483 50.000 21.02 21.02 0.00 4.85
417 431 1.069296 CAATCTCTTCGGTTGCGCAAA 60.069 47.619 26.87 6.66 0.00 3.68
418 432 1.234821 ATCTCTTCGGTTGCGCAAAA 58.765 45.000 26.87 15.00 0.00 2.44
419 433 1.018148 TCTCTTCGGTTGCGCAAAAA 58.982 45.000 26.87 17.71 0.00 1.94
472 486 2.440430 CTTCCGGCTCTCCCTCGA 60.440 66.667 0.00 0.00 0.00 4.04
516 530 0.802607 GTCGACCTGACTGCGAATCC 60.803 60.000 3.51 0.00 44.58 3.01
520 534 2.202932 CTGACTGCGAATCCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
550 565 3.244770 ACCTTTCCGAGTTTTCTATGCCA 60.245 43.478 0.00 0.00 0.00 4.92
568 583 2.098117 GCCAAAGGCGATATGATATGGC 59.902 50.000 10.50 10.50 44.44 4.40
569 584 3.346315 CCAAAGGCGATATGATATGGCA 58.654 45.455 18.82 0.00 0.00 4.92
570 585 3.127548 CCAAAGGCGATATGATATGGCAC 59.872 47.826 18.82 9.80 0.00 5.01
571 586 2.698855 AGGCGATATGATATGGCACC 57.301 50.000 18.82 5.02 0.00 5.01
583 598 3.443045 GGCACCAATCAGCACGGG 61.443 66.667 0.00 0.00 0.00 5.28
584 599 4.120331 GCACCAATCAGCACGGGC 62.120 66.667 0.00 0.00 41.61 6.13
595 610 2.738521 CACGGGCTTCACCAGACG 60.739 66.667 0.00 0.00 42.05 4.18
640 665 4.057428 GCAGGTGTCCTCTCGCGT 62.057 66.667 5.77 0.00 0.00 6.01
668 693 4.681978 GACAACGACCCAGGCGCT 62.682 66.667 7.64 0.00 0.00 5.92
700 725 4.978705 TTTTTCCCCACCCGGCCG 62.979 66.667 21.04 21.04 0.00 6.13
805 839 4.430765 TCCTCGCCGTCGCTTTCC 62.431 66.667 0.00 0.00 35.26 3.13
868 911 2.279851 CACGTTCACAGACCGGCA 60.280 61.111 0.00 0.00 0.00 5.69
873 916 0.741221 GTTCACAGACCGGCAGATCC 60.741 60.000 0.00 0.00 0.00 3.36
923 967 5.140454 ACCTTTTTCTGTAGCACCTTTGAT 58.860 37.500 0.00 0.00 0.00 2.57
932 976 4.640201 TGTAGCACCTTTGATCTTTATGCC 59.360 41.667 0.00 0.00 31.94 4.40
935 979 3.067320 GCACCTTTGATCTTTATGCCCTC 59.933 47.826 0.00 0.00 0.00 4.30
941 985 1.002544 GATCTTTATGCCCTCCTCCCG 59.997 57.143 0.00 0.00 0.00 5.14
972 1327 9.745018 TTTATCAAGAAATCTCAGGACAAATCT 57.255 29.630 0.00 0.00 0.00 2.40
975 1330 7.226441 TCAAGAAATCTCAGGACAAATCTTGA 58.774 34.615 9.98 9.98 45.34 3.02
1226 1581 2.234908 AGCTCAACACCTATGTCAGTCC 59.765 50.000 0.00 0.00 38.45 3.85
1238 1593 5.011125 CCTATGTCAGTCCGTTGATTCCTAT 59.989 44.000 0.00 0.00 0.00 2.57
1239 1594 6.208797 CCTATGTCAGTCCGTTGATTCCTATA 59.791 42.308 0.00 0.00 0.00 1.31
1240 1595 6.672266 ATGTCAGTCCGTTGATTCCTATAT 57.328 37.500 0.00 0.00 0.00 0.86
1241 1596 7.776618 ATGTCAGTCCGTTGATTCCTATATA 57.223 36.000 0.00 0.00 0.00 0.86
1243 1598 8.873186 TGTCAGTCCGTTGATTCCTATATATA 57.127 34.615 0.00 0.00 0.00 0.86
1267 1622 2.371841 AGTACTCCATTTGTGCTGTCCA 59.628 45.455 0.00 0.00 0.00 4.02
1269 1624 2.880443 ACTCCATTTGTGCTGTCCATT 58.120 42.857 0.00 0.00 0.00 3.16
1273 1628 2.598589 CATTTGTGCTGTCCATTTCCG 58.401 47.619 0.00 0.00 0.00 4.30
1274 1629 1.686355 TTTGTGCTGTCCATTTCCGT 58.314 45.000 0.00 0.00 0.00 4.69
1275 1630 0.950836 TTGTGCTGTCCATTTCCGTG 59.049 50.000 0.00 0.00 0.00 4.94
1276 1631 0.179032 TGTGCTGTCCATTTCCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
1279 1634 0.387239 GCTGTCCATTTCCGTGTTGC 60.387 55.000 0.00 0.00 0.00 4.17
1282 1637 2.416547 CTGTCCATTTCCGTGTTGCTAG 59.583 50.000 0.00 0.00 0.00 3.42
1289 1644 4.760047 CGTGTTGCTAGGCCGCCT 62.760 66.667 18.05 18.05 37.71 5.52
1319 1674 8.138928 TCCTGTTTATCTTGATTCAGAGAGAA 57.861 34.615 0.00 4.34 41.28 2.87
1326 1707 7.722949 ATCTTGATTCAGAGAGAAAGAGAGT 57.277 36.000 0.00 0.00 40.22 3.24
1327 1708 6.923012 TCTTGATTCAGAGAGAAAGAGAGTG 58.077 40.000 0.00 0.00 40.22 3.51
1328 1709 6.718912 TCTTGATTCAGAGAGAAAGAGAGTGA 59.281 38.462 0.00 0.00 40.22 3.41
1329 1710 6.513806 TGATTCAGAGAGAAAGAGAGTGAG 57.486 41.667 0.00 0.00 40.22 3.51
1330 1711 6.244654 TGATTCAGAGAGAAAGAGAGTGAGA 58.755 40.000 0.00 0.00 40.22 3.27
1340 1721 7.450014 AGAGAAAGAGAGTGAGATTTCTGTACA 59.550 37.037 3.93 0.00 40.97 2.90
1357 1738 2.542766 ACAAAGTTCTTGTGTGCGTG 57.457 45.000 0.00 0.00 0.00 5.34
1358 1739 1.191096 CAAAGTTCTTGTGTGCGTGC 58.809 50.000 0.00 0.00 0.00 5.34
1359 1740 0.248054 AAAGTTCTTGTGTGCGTGCG 60.248 50.000 0.00 0.00 0.00 5.34
1360 1741 1.366111 AAGTTCTTGTGTGCGTGCGT 61.366 50.000 0.00 0.00 0.00 5.24
1391 1772 2.729882 ACTGTGTACGCGAGACATTTTC 59.270 45.455 15.93 5.27 29.49 2.29
1400 1781 2.930682 GCGAGACATTTTCTGGGAGTAC 59.069 50.000 0.00 0.00 33.22 2.73
1446 1890 1.134640 TGGGGTGTCGATTTATGGACG 60.135 52.381 0.00 0.00 38.21 4.79
1451 1895 3.739300 GGTGTCGATTTATGGACGTATGG 59.261 47.826 0.00 0.00 38.21 2.74
1465 1909 1.980232 TATGGAGACCACGTGGCGT 60.980 57.895 34.26 21.68 42.36 5.68
1476 1920 1.621107 ACGTGGCGTGATAAGTTACG 58.379 50.000 0.00 0.00 39.18 3.18
1493 1948 4.034048 AGTTACGCTCTGAATATTTTGCGG 59.966 41.667 20.53 3.64 46.31 5.69
1494 1949 2.356135 ACGCTCTGAATATTTTGCGGT 58.644 42.857 20.53 10.03 46.31 5.68
1495 1950 3.527533 ACGCTCTGAATATTTTGCGGTA 58.472 40.909 20.53 0.00 46.31 4.02
1509 2030 1.532007 TGCGGTATTGTTCGTGGTTTC 59.468 47.619 0.00 0.00 0.00 2.78
1540 2061 4.531426 TGGCACGTTTTGGGGGCT 62.531 61.111 0.00 0.00 0.00 5.19
1554 2075 2.202946 GGCTGGCTAGAGGCGAAC 60.203 66.667 0.00 0.00 44.42 3.95
1581 2102 5.277779 CGAGGATTTAGTTTCACAAAGTGCA 60.278 40.000 0.00 0.00 32.98 4.57
1584 2105 5.915196 GGATTTAGTTTCACAAAGTGCAGAC 59.085 40.000 0.00 0.00 32.98 3.51
1588 2109 1.024271 TTCACAAAGTGCAGACAGCC 58.976 50.000 0.00 0.00 44.83 4.85
1589 2110 0.107263 TCACAAAGTGCAGACAGCCA 60.107 50.000 0.00 0.00 44.83 4.75
1590 2111 0.309922 CACAAAGTGCAGACAGCCAG 59.690 55.000 0.00 0.00 44.83 4.85
1592 2113 2.256591 AAAGTGCAGACAGCCAGCG 61.257 57.895 0.00 0.00 44.83 5.18
1594 2115 3.418068 GTGCAGACAGCCAGCGTC 61.418 66.667 0.00 6.54 44.83 5.19
1611 2134 2.675317 GCGTCCTTGCACTAGATTCTGT 60.675 50.000 0.00 0.00 34.15 3.41
1624 2147 7.466996 GCACTAGATTCTGTCCTGATCAAATTG 60.467 40.741 0.00 0.00 0.00 2.32
1636 2159 4.225984 TGATCAAATTGTTTTCCGCTTCG 58.774 39.130 0.00 0.00 0.00 3.79
1813 2339 2.144069 CACCGACGACGACATGACG 61.144 63.158 15.87 15.87 42.66 4.35
1854 2380 1.277557 GAGGCTGAAGAAGGAGCAGAA 59.722 52.381 0.00 0.00 36.90 3.02
1942 2468 2.202492 CTCGCGTTCCTCCTCACG 60.202 66.667 5.77 0.00 39.49 4.35
1943 2469 3.685214 CTCGCGTTCCTCCTCACGG 62.685 68.421 5.77 0.00 36.88 4.94
2045 2571 1.682684 GGTGAGAAGAGGGCGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
2234 2760 2.157738 GTGGGTACTGAGTACTGACGT 58.842 52.381 20.86 0.00 38.85 4.34
2237 2763 1.742268 GGTACTGAGTACTGACGTCCC 59.258 57.143 20.86 0.00 38.85 4.46
2240 2766 0.526662 CTGAGTACTGACGTCCCACC 59.473 60.000 14.12 0.00 0.00 4.61
2246 2772 0.320421 ACTGACGTCCCACCGAAATG 60.320 55.000 14.12 0.00 0.00 2.32
2247 2773 0.320421 CTGACGTCCCACCGAAATGT 60.320 55.000 14.12 0.00 0.00 2.71
2249 2775 1.004200 ACGTCCCACCGAAATGTCC 60.004 57.895 0.00 0.00 0.00 4.02
2250 2776 1.295423 CGTCCCACCGAAATGTCCT 59.705 57.895 0.00 0.00 0.00 3.85
2266 2793 2.819595 CTGCCCGCGTGTGCTAAT 60.820 61.111 4.92 0.00 39.65 1.73
2273 2800 1.398022 CGCGTGTGCTAATTGCTTGC 61.398 55.000 0.00 0.00 43.37 4.01
2276 2803 1.980844 CGTGTGCTAATTGCTTGCTTG 59.019 47.619 0.00 0.00 43.37 4.01
2277 2804 2.331194 GTGTGCTAATTGCTTGCTTGG 58.669 47.619 0.00 0.00 43.37 3.61
2279 2806 2.364970 TGTGCTAATTGCTTGCTTGGTT 59.635 40.909 0.00 0.00 43.37 3.67
2280 2807 3.181467 TGTGCTAATTGCTTGCTTGGTTT 60.181 39.130 0.00 0.00 43.37 3.27
2281 2808 3.809279 GTGCTAATTGCTTGCTTGGTTTT 59.191 39.130 0.00 0.00 43.37 2.43
2282 2809 4.987912 GTGCTAATTGCTTGCTTGGTTTTA 59.012 37.500 0.00 0.00 43.37 1.52
2284 2811 4.091945 GCTAATTGCTTGCTTGGTTTTAGC 59.908 41.667 0.00 0.00 38.95 3.09
2285 2812 2.524569 TTGCTTGCTTGGTTTTAGCC 57.475 45.000 0.00 0.00 37.85 3.93
2286 2813 0.313672 TGCTTGCTTGGTTTTAGCCG 59.686 50.000 0.00 0.00 37.85 5.52
2287 2814 0.596082 GCTTGCTTGGTTTTAGCCGA 59.404 50.000 0.00 0.00 37.85 5.54
2292 2819 1.992667 GCTTGGTTTTAGCCGAATTGC 59.007 47.619 0.00 0.00 32.45 3.56
2293 2820 2.250188 CTTGGTTTTAGCCGAATTGCG 58.750 47.619 0.00 0.00 40.47 4.85
2294 2821 1.240256 TGGTTTTAGCCGAATTGCGT 58.760 45.000 0.00 0.00 38.67 5.24
2295 2822 1.068885 TGGTTTTAGCCGAATTGCGTG 60.069 47.619 0.00 0.00 38.67 5.34
2296 2823 1.198178 GGTTTTAGCCGAATTGCGTGA 59.802 47.619 0.00 0.00 38.67 4.35
2301 2836 2.965147 GCCGAATTGCGTGACTGCA 61.965 57.895 0.00 0.00 44.61 4.41
2314 2849 1.001487 TGACTGCAATTTTGACCGCTG 60.001 47.619 0.00 0.00 0.00 5.18
2322 2858 1.974265 TTTTGACCGCTGATGTTCCA 58.026 45.000 0.00 0.00 0.00 3.53
2324 2860 1.974265 TTGACCGCTGATGTTCCAAA 58.026 45.000 0.00 0.00 0.00 3.28
2335 2871 4.378774 TGATGTTCCAAATTTGCCTTGTG 58.621 39.130 12.92 0.00 0.00 3.33
2346 2882 1.751927 GCCTTGTGCCAGGGATGAG 60.752 63.158 7.40 0.00 31.89 2.90
2352 2888 2.195727 TGTGCCAGGGATGAGACAATA 58.804 47.619 0.00 0.00 0.00 1.90
2358 2894 4.404640 CCAGGGATGAGACAATATGCAAT 58.595 43.478 0.00 0.00 0.00 3.56
2359 2895 4.831155 CCAGGGATGAGACAATATGCAATT 59.169 41.667 0.00 0.00 0.00 2.32
2360 2896 5.303589 CCAGGGATGAGACAATATGCAATTT 59.696 40.000 0.00 0.00 0.00 1.82
2361 2897 6.183360 CCAGGGATGAGACAATATGCAATTTT 60.183 38.462 0.00 0.00 0.00 1.82
2362 2898 7.014518 CCAGGGATGAGACAATATGCAATTTTA 59.985 37.037 0.00 0.00 0.00 1.52
2363 2899 8.582437 CAGGGATGAGACAATATGCAATTTTAT 58.418 33.333 0.00 0.00 0.00 1.40
2364 2900 9.151177 AGGGATGAGACAATATGCAATTTTATT 57.849 29.630 0.00 0.00 0.00 1.40
2365 2901 9.415544 GGGATGAGACAATATGCAATTTTATTC 57.584 33.333 0.00 0.00 0.00 1.75
2366 2902 9.970395 GGATGAGACAATATGCAATTTTATTCA 57.030 29.630 0.00 0.00 0.00 2.57
2369 2905 9.251792 TGAGACAATATGCAATTTTATTCATGC 57.748 29.630 0.00 0.00 39.22 4.06
2374 2910 3.519579 TGCAATTTTATTCATGCACGGG 58.480 40.909 0.00 0.00 43.32 5.28
2375 2911 2.865551 GCAATTTTATTCATGCACGGGG 59.134 45.455 0.00 0.00 38.63 5.73
2376 2912 3.678529 GCAATTTTATTCATGCACGGGGT 60.679 43.478 0.00 0.00 38.63 4.95
2377 2913 3.799281 ATTTTATTCATGCACGGGGTG 57.201 42.857 0.00 0.00 36.51 4.61
2378 2914 2.208132 TTTATTCATGCACGGGGTGT 57.792 45.000 0.00 0.00 35.75 4.16
2379 2915 3.351794 TTTATTCATGCACGGGGTGTA 57.648 42.857 0.00 0.00 35.75 2.90
2380 2916 3.569194 TTATTCATGCACGGGGTGTAT 57.431 42.857 0.00 0.00 39.29 2.29
2381 2917 1.967319 ATTCATGCACGGGGTGTATC 58.033 50.000 0.00 0.00 36.79 2.24
2382 2918 0.615850 TTCATGCACGGGGTGTATCA 59.384 50.000 0.00 0.00 36.79 2.15
2383 2919 0.177836 TCATGCACGGGGTGTATCAG 59.822 55.000 0.00 0.00 36.79 2.90
2384 2920 0.107703 CATGCACGGGGTGTATCAGT 60.108 55.000 0.00 0.00 36.79 3.41
2385 2921 0.178068 ATGCACGGGGTGTATCAGTC 59.822 55.000 0.00 0.00 33.93 3.51
2386 2922 1.153429 GCACGGGGTGTATCAGTCC 60.153 63.158 0.00 0.00 35.75 3.85
2387 2923 1.141019 CACGGGGTGTATCAGTCCG 59.859 63.158 0.00 0.00 45.42 4.79
2388 2924 3.612251 CGGGGTGTATCAGTCCGT 58.388 61.111 0.00 0.00 36.38 4.69
2389 2925 1.895238 CGGGGTGTATCAGTCCGTT 59.105 57.895 0.00 0.00 36.38 4.44
2390 2926 0.248289 CGGGGTGTATCAGTCCGTTT 59.752 55.000 0.00 0.00 36.38 3.60
2391 2927 1.338389 CGGGGTGTATCAGTCCGTTTT 60.338 52.381 0.00 0.00 36.38 2.43
2392 2928 2.353323 GGGGTGTATCAGTCCGTTTTC 58.647 52.381 0.00 0.00 0.00 2.29
2393 2929 2.289819 GGGGTGTATCAGTCCGTTTTCA 60.290 50.000 0.00 0.00 0.00 2.69
2394 2930 2.740447 GGGTGTATCAGTCCGTTTTCAC 59.260 50.000 0.00 0.00 0.00 3.18
2395 2931 2.410730 GGTGTATCAGTCCGTTTTCACG 59.589 50.000 0.00 0.00 46.71 4.35
2403 2939 2.943653 CGTTTTCACGGTGCCTCC 59.056 61.111 2.51 0.00 43.16 4.30
2422 2958 3.188011 CTGAGCAGCTACGGTCGA 58.812 61.111 0.00 0.00 36.16 4.20
2423 2959 1.226435 CTGAGCAGCTACGGTCGAC 60.226 63.158 7.13 7.13 36.16 4.20
2434 2970 3.231501 GGTCGACGATAATGGCGC 58.768 61.111 9.92 0.00 0.00 6.53
2435 2971 1.590525 GGTCGACGATAATGGCGCA 60.591 57.895 10.83 0.00 0.00 6.09
2436 2972 1.149361 GGTCGACGATAATGGCGCAA 61.149 55.000 10.83 0.00 0.00 4.85
2437 2973 0.859232 GTCGACGATAATGGCGCAAT 59.141 50.000 10.83 0.00 0.00 3.56
2438 2974 1.260561 GTCGACGATAATGGCGCAATT 59.739 47.619 15.67 15.67 0.00 2.32
2439 2975 1.937223 TCGACGATAATGGCGCAATTT 59.063 42.857 16.69 3.56 0.00 1.82
2440 2976 2.033236 TCGACGATAATGGCGCAATTTC 60.033 45.455 16.69 11.70 0.00 2.17
2441 2977 2.298300 GACGATAATGGCGCAATTTCG 58.702 47.619 26.34 26.34 0.00 3.46
2442 2978 1.668751 ACGATAATGGCGCAATTTCGT 59.331 42.857 27.23 27.23 33.03 3.85
2443 2979 2.036217 CGATAATGGCGCAATTTCGTG 58.964 47.619 16.69 0.00 0.00 4.35
2444 2980 2.538737 CGATAATGGCGCAATTTCGTGT 60.539 45.455 16.69 0.00 0.00 4.49
2445 2981 2.254918 TAATGGCGCAATTTCGTGTG 57.745 45.000 16.69 0.00 0.00 3.82
2446 2982 0.595588 AATGGCGCAATTTCGTGTGA 59.404 45.000 10.83 0.00 0.00 3.58
2447 2983 0.810648 ATGGCGCAATTTCGTGTGAT 59.189 45.000 10.83 0.00 0.00 3.06
2448 2984 0.595588 TGGCGCAATTTCGTGTGATT 59.404 45.000 10.83 0.00 0.00 2.57
2449 2985 1.000827 TGGCGCAATTTCGTGTGATTT 60.001 42.857 10.83 0.00 0.00 2.17
2450 2986 1.386412 GGCGCAATTTCGTGTGATTTG 59.614 47.619 10.83 0.00 0.00 2.32
2451 2987 1.201693 GCGCAATTTCGTGTGATTTGC 60.202 47.619 0.30 0.00 38.89 3.68
2452 2988 2.049959 CGCAATTTCGTGTGATTTGCA 58.950 42.857 6.73 0.00 40.71 4.08
2453 2989 2.470628 CGCAATTTCGTGTGATTTGCAA 59.529 40.909 0.00 0.00 40.71 4.08
2454 2990 3.420799 CGCAATTTCGTGTGATTTGCAAG 60.421 43.478 0.00 0.00 40.71 4.01
2455 2991 3.490526 GCAATTTCGTGTGATTTGCAAGT 59.509 39.130 0.00 0.00 40.54 3.16
2456 2992 4.375305 GCAATTTCGTGTGATTTGCAAGTC 60.375 41.667 14.57 14.57 40.54 3.01
2457 2993 4.566545 ATTTCGTGTGATTTGCAAGTCA 57.433 36.364 19.55 19.55 0.00 3.41
2458 2994 4.362932 TTTCGTGTGATTTGCAAGTCAA 57.637 36.364 24.21 12.91 0.00 3.18
2459 2995 3.332761 TCGTGTGATTTGCAAGTCAAC 57.667 42.857 24.21 20.72 33.73 3.18
2460 2996 2.032799 TCGTGTGATTTGCAAGTCAACC 59.967 45.455 24.21 16.40 33.73 3.77
2461 2997 2.223456 CGTGTGATTTGCAAGTCAACCA 60.223 45.455 24.21 16.61 33.73 3.67
2462 2998 3.733380 CGTGTGATTTGCAAGTCAACCAA 60.733 43.478 24.21 9.42 33.73 3.67
2463 2999 4.180057 GTGTGATTTGCAAGTCAACCAAA 58.820 39.130 24.21 7.20 33.73 3.28
2464 3000 4.629200 GTGTGATTTGCAAGTCAACCAAAA 59.371 37.500 24.21 5.63 33.73 2.44
2465 3001 5.121454 GTGTGATTTGCAAGTCAACCAAAAA 59.879 36.000 24.21 0.00 33.73 1.94
2498 3034 4.695217 TTTTTGAGAAACGTCAGCACTT 57.305 36.364 0.00 0.00 0.00 3.16
2499 3035 4.695217 TTTTGAGAAACGTCAGCACTTT 57.305 36.364 0.00 0.00 0.00 2.66
2500 3036 5.804692 TTTTGAGAAACGTCAGCACTTTA 57.195 34.783 0.00 0.00 0.00 1.85
2501 3037 6.371809 TTTTGAGAAACGTCAGCACTTTAT 57.628 33.333 0.00 0.00 0.00 1.40
2502 3038 6.371809 TTTGAGAAACGTCAGCACTTTATT 57.628 33.333 0.00 0.00 0.00 1.40
2503 3039 7.485418 TTTGAGAAACGTCAGCACTTTATTA 57.515 32.000 0.00 0.00 0.00 0.98
2504 3040 7.485418 TTGAGAAACGTCAGCACTTTATTAA 57.515 32.000 0.00 0.00 0.00 1.40
2505 3041 7.667043 TGAGAAACGTCAGCACTTTATTAAT 57.333 32.000 0.00 0.00 0.00 1.40
2506 3042 7.739295 TGAGAAACGTCAGCACTTTATTAATC 58.261 34.615 0.00 0.00 0.00 1.75
2507 3043 7.386573 TGAGAAACGTCAGCACTTTATTAATCA 59.613 33.333 0.00 0.00 0.00 2.57
2508 3044 8.094798 AGAAACGTCAGCACTTTATTAATCAA 57.905 30.769 0.00 0.00 0.00 2.57
2509 3045 8.230486 AGAAACGTCAGCACTTTATTAATCAAG 58.770 33.333 7.67 7.67 0.00 3.02
2510 3046 5.869350 ACGTCAGCACTTTATTAATCAAGC 58.131 37.500 8.93 0.00 0.00 4.01
2511 3047 4.957967 CGTCAGCACTTTATTAATCAAGCG 59.042 41.667 8.93 1.87 0.00 4.68
2512 3048 5.220397 CGTCAGCACTTTATTAATCAAGCGA 60.220 40.000 8.93 0.11 0.00 4.93
2513 3049 5.960105 GTCAGCACTTTATTAATCAAGCGAC 59.040 40.000 8.93 7.38 0.00 5.19
2514 3050 5.641636 TCAGCACTTTATTAATCAAGCGACA 59.358 36.000 8.93 0.00 0.00 4.35
2515 3051 6.316140 TCAGCACTTTATTAATCAAGCGACAT 59.684 34.615 8.93 0.00 0.00 3.06
2516 3052 7.494298 TCAGCACTTTATTAATCAAGCGACATA 59.506 33.333 8.93 0.00 0.00 2.29
2517 3053 8.122330 CAGCACTTTATTAATCAAGCGACATAA 58.878 33.333 8.93 0.00 0.00 1.90
2518 3054 8.673711 AGCACTTTATTAATCAAGCGACATAAA 58.326 29.630 8.93 0.00 0.00 1.40
2519 3055 9.450807 GCACTTTATTAATCAAGCGACATAAAT 57.549 29.630 8.93 0.00 0.00 1.40
2528 3064 7.849804 ATCAAGCGACATAAATACAAAGAGT 57.150 32.000 0.00 0.00 0.00 3.24
2529 3065 7.290857 TCAAGCGACATAAATACAAAGAGTC 57.709 36.000 0.00 0.00 0.00 3.36
2530 3066 6.312918 TCAAGCGACATAAATACAAAGAGTCC 59.687 38.462 0.00 0.00 0.00 3.85
2531 3067 4.804139 AGCGACATAAATACAAAGAGTCCG 59.196 41.667 0.00 0.00 0.00 4.79
2532 3068 4.025979 GCGACATAAATACAAAGAGTCCGG 60.026 45.833 0.00 0.00 0.00 5.14
2533 3069 4.506654 CGACATAAATACAAAGAGTCCGGG 59.493 45.833 0.00 0.00 0.00 5.73
2534 3070 5.667466 GACATAAATACAAAGAGTCCGGGA 58.333 41.667 0.00 0.00 0.00 5.14
2535 3071 6.248569 ACATAAATACAAAGAGTCCGGGAT 57.751 37.500 0.00 0.00 0.00 3.85
2536 3072 7.369551 ACATAAATACAAAGAGTCCGGGATA 57.630 36.000 0.00 0.00 0.00 2.59
2537 3073 7.215085 ACATAAATACAAAGAGTCCGGGATAC 58.785 38.462 0.00 0.00 0.00 2.24
2538 3074 5.687166 AAATACAAAGAGTCCGGGATACA 57.313 39.130 0.00 0.00 39.74 2.29
2539 3075 4.939052 ATACAAAGAGTCCGGGATACAG 57.061 45.455 0.00 0.00 39.74 2.74
2540 3076 2.537143 ACAAAGAGTCCGGGATACAGT 58.463 47.619 0.00 0.00 39.74 3.55
2541 3077 2.496470 ACAAAGAGTCCGGGATACAGTC 59.504 50.000 0.00 0.00 39.74 3.51
2550 3086 2.199117 GGATACAGTCCGGAGCACA 58.801 57.895 3.06 0.00 37.23 4.57
2551 3087 0.535335 GGATACAGTCCGGAGCACAA 59.465 55.000 3.06 0.00 37.23 3.33
2552 3088 1.471676 GGATACAGTCCGGAGCACAAG 60.472 57.143 3.06 0.00 37.23 3.16
2553 3089 0.537188 ATACAGTCCGGAGCACAAGG 59.463 55.000 3.06 0.00 0.00 3.61
2554 3090 0.541063 TACAGTCCGGAGCACAAGGA 60.541 55.000 3.06 0.00 0.00 3.36
2555 3091 1.371183 CAGTCCGGAGCACAAGGAA 59.629 57.895 3.06 0.00 35.60 3.36
2556 3092 0.250295 CAGTCCGGAGCACAAGGAAA 60.250 55.000 3.06 0.00 35.60 3.13
2557 3093 0.472471 AGTCCGGAGCACAAGGAAAA 59.528 50.000 3.06 0.00 35.60 2.29
2558 3094 0.875059 GTCCGGAGCACAAGGAAAAG 59.125 55.000 3.06 0.00 35.60 2.27
2559 3095 0.762418 TCCGGAGCACAAGGAAAAGA 59.238 50.000 0.00 0.00 0.00 2.52
2560 3096 1.351017 TCCGGAGCACAAGGAAAAGAT 59.649 47.619 0.00 0.00 0.00 2.40
2561 3097 1.740025 CCGGAGCACAAGGAAAAGATC 59.260 52.381 0.00 0.00 0.00 2.75
2574 3110 5.422214 GGAAAAGATCCCTAGAGTTCACA 57.578 43.478 0.00 0.00 43.00 3.58
2575 3111 5.179533 GGAAAAGATCCCTAGAGTTCACAC 58.820 45.833 0.00 0.00 43.00 3.82
2576 3112 5.280011 GGAAAAGATCCCTAGAGTTCACACA 60.280 44.000 0.00 0.00 43.00 3.72
2577 3113 5.825593 AAAGATCCCTAGAGTTCACACAA 57.174 39.130 0.00 0.00 0.00 3.33
2578 3114 4.810191 AGATCCCTAGAGTTCACACAAC 57.190 45.455 0.00 0.00 0.00 3.32
2579 3115 4.160329 AGATCCCTAGAGTTCACACAACA 58.840 43.478 0.00 0.00 0.00 3.33
2580 3116 3.746045 TCCCTAGAGTTCACACAACAC 57.254 47.619 0.00 0.00 0.00 3.32
2621 3157 1.684450 GGACCCATTTTGTCCGTTTGT 59.316 47.619 0.00 0.00 42.63 2.83
2671 3210 2.735857 CGACCCAAACGGACGTCC 60.736 66.667 25.28 25.28 43.65 4.79
2974 3545 2.185350 CTAGGCCGTCTGCACAGG 59.815 66.667 0.00 0.00 43.89 4.00
3039 3610 4.643387 GGAGCAGGTTGCCACGGT 62.643 66.667 0.00 0.00 46.52 4.83
3068 3639 4.020617 CTCCTTCACGCCCCAGCA 62.021 66.667 0.00 0.00 39.83 4.41
3221 3809 4.144727 GGAGAGAGGAGGGGCGGA 62.145 72.222 0.00 0.00 0.00 5.54
3222 3810 2.835895 GAGAGAGGAGGGGCGGAC 60.836 72.222 0.00 0.00 0.00 4.79
3223 3811 4.824515 AGAGAGGAGGGGCGGACG 62.825 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.541998 TGTTTCCTCCTCCTCTGCGA 60.542 55.000 0.00 0.00 0.00 5.10
2 3 0.321671 TTGTTTCCTCCTCCTCTGCG 59.678 55.000 0.00 0.00 0.00 5.18
3 4 2.568623 TTTGTTTCCTCCTCCTCTGC 57.431 50.000 0.00 0.00 0.00 4.26
4 5 3.755378 CACATTTGTTTCCTCCTCCTCTG 59.245 47.826 0.00 0.00 0.00 3.35
5 6 3.395941 ACACATTTGTTTCCTCCTCCTCT 59.604 43.478 0.00 0.00 28.43 3.69
6 7 3.503748 CACACATTTGTTTCCTCCTCCTC 59.496 47.826 0.00 0.00 31.66 3.71
7 8 3.490348 CACACATTTGTTTCCTCCTCCT 58.510 45.455 0.00 0.00 31.66 3.69
8 9 2.558359 CCACACATTTGTTTCCTCCTCC 59.442 50.000 0.00 0.00 31.66 4.30
9 10 3.004734 CACCACACATTTGTTTCCTCCTC 59.995 47.826 0.00 0.00 31.66 3.71
10 11 2.958355 CACCACACATTTGTTTCCTCCT 59.042 45.455 0.00 0.00 31.66 3.69
11 12 2.545742 GCACCACACATTTGTTTCCTCC 60.546 50.000 0.00 0.00 31.66 4.30
12 13 2.742774 GCACCACACATTTGTTTCCTC 58.257 47.619 0.00 0.00 31.66 3.71
13 14 1.066908 CGCACCACACATTTGTTTCCT 59.933 47.619 0.00 0.00 31.66 3.36
14 15 1.486439 CGCACCACACATTTGTTTCC 58.514 50.000 0.00 0.00 31.66 3.13
15 16 0.852136 GCGCACCACACATTTGTTTC 59.148 50.000 0.30 0.00 31.66 2.78
16 17 0.174389 TGCGCACCACACATTTGTTT 59.826 45.000 5.66 0.00 31.66 2.83
17 18 0.174389 TTGCGCACCACACATTTGTT 59.826 45.000 11.12 0.00 31.66 2.83
18 19 0.527385 GTTGCGCACCACACATTTGT 60.527 50.000 11.12 0.00 35.84 2.83
19 20 1.214373 GGTTGCGCACCACACATTTG 61.214 55.000 11.12 0.00 46.42 2.32
20 21 1.067250 GGTTGCGCACCACACATTT 59.933 52.632 11.12 0.00 46.42 2.32
21 22 2.727544 GGTTGCGCACCACACATT 59.272 55.556 11.12 0.00 46.42 2.71
47 48 1.077089 GCTTTAGGACTCGTGCGACC 61.077 60.000 0.00 0.00 0.00 4.79
49 50 1.214589 GGCTTTAGGACTCGTGCGA 59.785 57.895 0.00 0.00 0.00 5.10
94 96 3.173390 GATCGCCAGCCACGCATTC 62.173 63.158 0.00 0.00 0.00 2.67
146 148 1.007734 CTTGCTGGTTGCTGCACAG 60.008 57.895 14.03 14.03 43.37 3.66
148 150 2.337532 CCTTGCTGGTTGCTGCAC 59.662 61.111 0.00 0.00 43.37 4.57
149 151 2.913578 CCCTTGCTGGTTGCTGCA 60.914 61.111 0.00 0.00 43.37 4.41
150 152 4.368543 GCCCTTGCTGGTTGCTGC 62.369 66.667 0.00 0.00 43.37 5.25
153 155 2.263540 CATGCCCTTGCTGGTTGC 59.736 61.111 0.00 0.00 43.25 4.17
154 156 1.607178 TCCATGCCCTTGCTGGTTG 60.607 57.895 0.00 0.00 37.20 3.77
155 157 1.607467 GTCCATGCCCTTGCTGGTT 60.607 57.895 0.00 0.00 37.20 3.67
156 158 2.036256 GTCCATGCCCTTGCTGGT 59.964 61.111 0.00 0.00 37.20 4.00
157 159 3.136123 CGTCCATGCCCTTGCTGG 61.136 66.667 0.00 0.00 38.71 4.85
158 160 3.818787 GCGTCCATGCCCTTGCTG 61.819 66.667 0.00 0.00 38.71 4.41
194 196 3.550974 GCGATGGCCCTCTCCTAA 58.449 61.111 0.00 0.00 0.00 2.69
252 260 1.271934 CTGGATCTGGATGCGAGTAGG 59.728 57.143 0.00 0.00 31.21 3.18
256 264 0.879400 GTGCTGGATCTGGATGCGAG 60.879 60.000 0.00 0.00 31.21 5.03
257 265 1.144716 GTGCTGGATCTGGATGCGA 59.855 57.895 0.00 0.00 31.21 5.10
258 266 1.153309 TGTGCTGGATCTGGATGCG 60.153 57.895 0.00 0.00 31.21 4.73
259 267 0.107312 AGTGTGCTGGATCTGGATGC 60.107 55.000 0.00 0.00 0.00 3.91
260 268 1.208776 TCAGTGTGCTGGATCTGGATG 59.791 52.381 0.00 0.00 42.78 3.51
261 269 1.576577 TCAGTGTGCTGGATCTGGAT 58.423 50.000 0.00 0.00 42.78 3.41
262 270 1.351076 TTCAGTGTGCTGGATCTGGA 58.649 50.000 0.00 0.00 42.78 3.86
263 271 2.414994 ATTCAGTGTGCTGGATCTGG 57.585 50.000 0.00 0.00 36.18 3.86
264 272 3.181513 CGAAATTCAGTGTGCTGGATCTG 60.182 47.826 0.00 0.00 39.97 2.90
265 273 3.005554 CGAAATTCAGTGTGCTGGATCT 58.994 45.455 0.00 0.00 39.97 2.75
266 274 3.002791 TCGAAATTCAGTGTGCTGGATC 58.997 45.455 0.00 0.00 39.97 3.36
285 299 2.202797 CCATGGCCAGACTCGTCG 60.203 66.667 13.05 0.00 34.09 5.12
303 317 4.201871 CGTTTTGGCAAGACTACAGTTTCA 60.202 41.667 17.47 0.00 0.00 2.69
353 367 1.376553 GGAGGAGTGCTGCTTGTCC 60.377 63.158 0.00 4.33 0.00 4.02
354 368 1.376553 GGGAGGAGTGCTGCTTGTC 60.377 63.158 2.65 0.00 0.00 3.18
355 369 1.422161 AAGGGAGGAGTGCTGCTTGT 61.422 55.000 2.65 0.00 0.00 3.16
364 378 1.986882 CACAGCAAAAAGGGAGGAGT 58.013 50.000 0.00 0.00 0.00 3.85
367 381 1.286880 CGCACAGCAAAAAGGGAGG 59.713 57.895 0.00 0.00 0.00 4.30
377 391 3.113514 TTGAGTTCCCCGCACAGCA 62.114 57.895 0.00 0.00 0.00 4.41
378 392 2.281484 TTGAGTTCCCCGCACAGC 60.281 61.111 0.00 0.00 0.00 4.40
379 393 1.966451 GGTTGAGTTCCCCGCACAG 60.966 63.158 0.00 0.00 0.00 3.66
380 394 2.112297 GGTTGAGTTCCCCGCACA 59.888 61.111 0.00 0.00 0.00 4.57
381 395 0.893727 ATTGGTTGAGTTCCCCGCAC 60.894 55.000 0.00 0.00 0.00 5.34
422 436 8.046107 TGGATTTCTGGTCACTTTTTCATTTTT 58.954 29.630 0.00 0.00 0.00 1.94
427 441 4.584325 CCTGGATTTCTGGTCACTTTTTCA 59.416 41.667 0.00 0.00 0.00 2.69
434 448 1.026718 CGCCCTGGATTTCTGGTCAC 61.027 60.000 0.00 0.00 33.14 3.67
550 565 3.244875 TGGTGCCATATCATATCGCCTTT 60.245 43.478 0.00 0.00 0.00 3.11
562 577 1.311859 CGTGCTGATTGGTGCCATAT 58.688 50.000 0.00 0.00 0.00 1.78
563 578 0.747644 CCGTGCTGATTGGTGCCATA 60.748 55.000 0.00 0.00 0.00 2.74
565 580 2.672651 CCGTGCTGATTGGTGCCA 60.673 61.111 0.00 0.00 0.00 4.92
566 581 3.443045 CCCGTGCTGATTGGTGCC 61.443 66.667 0.00 0.00 0.00 5.01
567 582 4.120331 GCCCGTGCTGATTGGTGC 62.120 66.667 0.00 0.00 33.53 5.01
609 634 0.319728 ACCTGCTATGCTATGCCGAG 59.680 55.000 0.00 0.00 0.00 4.63
610 635 0.033920 CACCTGCTATGCTATGCCGA 59.966 55.000 0.00 0.00 0.00 5.54
611 636 0.250038 ACACCTGCTATGCTATGCCG 60.250 55.000 0.00 0.00 0.00 5.69
612 637 1.517242 GACACCTGCTATGCTATGCC 58.483 55.000 0.00 0.00 0.00 4.40
613 638 1.071385 AGGACACCTGCTATGCTATGC 59.929 52.381 0.00 0.00 29.57 3.14
645 670 4.612412 TGGGTCGTTGTCGCCACC 62.612 66.667 0.00 0.00 35.88 4.61
646 671 3.041940 CTGGGTCGTTGTCGCCAC 61.042 66.667 0.00 0.00 35.88 5.01
647 672 4.308458 CCTGGGTCGTTGTCGCCA 62.308 66.667 0.00 0.00 35.88 5.69
651 676 4.681978 AGCGCCTGGGTCGTTGTC 62.682 66.667 2.29 0.00 0.00 3.18
652 677 4.988598 CAGCGCCTGGGTCGTTGT 62.989 66.667 2.29 0.00 34.28 3.32
653 678 4.988598 ACAGCGCCTGGGTCGTTG 62.989 66.667 2.29 14.37 42.48 4.10
654 679 4.988598 CACAGCGCCTGGGTCGTT 62.989 66.667 2.29 0.00 35.51 3.85
733 767 4.973055 TTTCCGCCGGTGGTCACG 62.973 66.667 32.48 12.01 0.00 4.35
821 855 4.619227 TATAAGCCTGCCGCGCCC 62.619 66.667 0.00 0.00 44.76 6.13
848 882 3.403057 CGGTCTGTGAACGTGGCG 61.403 66.667 0.00 0.00 38.03 5.69
849 883 3.041940 CCGGTCTGTGAACGTGGC 61.042 66.667 4.33 0.00 41.61 5.01
897 941 6.603997 TCAAAGGTGCTACAGAAAAAGGTAAA 59.396 34.615 0.00 0.00 0.00 2.01
900 944 4.532834 TCAAAGGTGCTACAGAAAAAGGT 58.467 39.130 0.00 0.00 0.00 3.50
923 967 0.326238 ACGGGAGGAGGGCATAAAGA 60.326 55.000 0.00 0.00 0.00 2.52
932 976 4.404715 TCTTGATAAAGTAACGGGAGGAGG 59.595 45.833 0.00 0.00 0.00 4.30
935 979 7.048512 AGATTTCTTGATAAAGTAACGGGAGG 58.951 38.462 0.00 0.00 0.00 4.30
941 985 9.436957 TGTCCTGAGATTTCTTGATAAAGTAAC 57.563 33.333 0.00 0.00 0.00 2.50
972 1327 8.142551 GGTCTGTCTCTAACTAAAGTTTCTCAA 58.857 37.037 0.00 0.00 39.31 3.02
975 1330 6.489361 TCGGTCTGTCTCTAACTAAAGTTTCT 59.511 38.462 0.00 0.00 39.31 2.52
977 1332 6.645790 TCGGTCTGTCTCTAACTAAAGTTT 57.354 37.500 0.00 0.00 39.31 2.66
978 1333 6.350277 CCATCGGTCTGTCTCTAACTAAAGTT 60.350 42.308 0.39 0.39 41.73 2.66
1110 1465 0.111704 CGACGACGAAGCTGTTGTTG 60.112 55.000 0.00 0.00 42.66 3.33
1238 1593 9.363401 ACAGCACAAATGGAGTACTAGTATATA 57.637 33.333 5.75 0.00 0.00 0.86
1239 1594 8.251383 ACAGCACAAATGGAGTACTAGTATAT 57.749 34.615 5.75 0.00 0.00 0.86
1240 1595 7.201884 GGACAGCACAAATGGAGTACTAGTATA 60.202 40.741 5.75 0.00 0.00 1.47
1241 1596 6.407074 GGACAGCACAAATGGAGTACTAGTAT 60.407 42.308 5.75 0.00 0.00 2.12
1243 1598 4.322801 GGACAGCACAAATGGAGTACTAGT 60.323 45.833 0.00 0.00 0.00 2.57
1246 1601 2.371841 TGGACAGCACAAATGGAGTACT 59.628 45.455 0.00 0.00 0.00 2.73
1247 1602 2.778299 TGGACAGCACAAATGGAGTAC 58.222 47.619 0.00 0.00 0.00 2.73
1249 1604 2.592102 ATGGACAGCACAAATGGAGT 57.408 45.000 0.00 0.00 0.00 3.85
1250 1605 3.367703 GGAAATGGACAGCACAAATGGAG 60.368 47.826 0.00 0.00 0.00 3.86
1252 1607 2.671914 CGGAAATGGACAGCACAAATGG 60.672 50.000 0.00 0.00 0.00 3.16
1254 1609 2.030007 CACGGAAATGGACAGCACAAAT 60.030 45.455 0.00 0.00 0.00 2.32
1255 1610 1.336440 CACGGAAATGGACAGCACAAA 59.664 47.619 0.00 0.00 0.00 2.83
1260 1615 0.387239 GCAACACGGAAATGGACAGC 60.387 55.000 0.00 0.00 0.00 4.40
1261 1616 1.238439 AGCAACACGGAAATGGACAG 58.762 50.000 0.00 0.00 0.00 3.51
1262 1617 2.422597 CTAGCAACACGGAAATGGACA 58.577 47.619 0.00 0.00 0.00 4.02
1263 1618 1.737793 CCTAGCAACACGGAAATGGAC 59.262 52.381 0.00 0.00 0.00 4.02
1267 1622 1.024579 CGGCCTAGCAACACGGAAAT 61.025 55.000 0.00 0.00 0.00 2.17
1269 1624 2.047655 CGGCCTAGCAACACGGAA 60.048 61.111 0.00 0.00 0.00 4.30
1273 1628 3.127533 CAGGCGGCCTAGCAACAC 61.128 66.667 23.37 0.00 39.27 3.32
1288 1643 2.621338 TCAAGATAAACAGGAGCGCAG 58.379 47.619 11.47 0.00 0.00 5.18
1289 1644 2.760634 TCAAGATAAACAGGAGCGCA 57.239 45.000 11.47 0.00 0.00 6.09
1295 1650 8.783833 TTTCTCTCTGAATCAAGATAAACAGG 57.216 34.615 0.00 0.00 34.24 4.00
1319 1674 7.731054 ACTTTGTACAGAAATCTCACTCTCTT 58.269 34.615 0.00 0.00 0.00 2.85
1325 1706 7.852945 CACAAGAACTTTGTACAGAAATCTCAC 59.147 37.037 0.00 0.00 0.00 3.51
1326 1707 7.552687 ACACAAGAACTTTGTACAGAAATCTCA 59.447 33.333 0.00 0.00 0.00 3.27
1327 1708 7.852945 CACACAAGAACTTTGTACAGAAATCTC 59.147 37.037 0.00 0.00 0.00 2.75
1328 1709 7.679638 GCACACAAGAACTTTGTACAGAAATCT 60.680 37.037 0.00 0.00 0.00 2.40
1329 1710 6.414987 GCACACAAGAACTTTGTACAGAAATC 59.585 38.462 0.00 0.00 0.00 2.17
1330 1711 6.265577 GCACACAAGAACTTTGTACAGAAAT 58.734 36.000 0.00 0.00 0.00 2.17
1340 1721 0.248054 CGCACGCACACAAGAACTTT 60.248 50.000 0.00 0.00 0.00 2.66
1357 1738 1.083657 CACAGTTGTACGCACACGC 60.084 57.895 0.00 0.00 45.53 5.34
1358 1739 1.188573 GTACACAGTTGTACGCACACG 59.811 52.381 0.00 0.00 46.64 4.49
1359 1740 2.916735 GTACACAGTTGTACGCACAC 57.083 50.000 0.00 0.00 46.64 3.82
1378 1759 1.002366 CTCCCAGAAAATGTCTCGCG 58.998 55.000 0.00 0.00 32.70 5.87
1382 1763 6.875972 ACTATGTACTCCCAGAAAATGTCT 57.124 37.500 0.00 0.00 36.88 3.41
1391 1772 4.985538 AAGACGAACTATGTACTCCCAG 57.014 45.455 0.00 0.00 0.00 4.45
1400 1781 5.118664 CCACACACAGTAAAGACGAACTATG 59.881 44.000 0.00 0.00 0.00 2.23
1446 1890 1.518572 CGCCACGTGGTCTCCATAC 60.519 63.158 33.92 14.79 35.28 2.39
1465 1909 8.335356 GCAAAATATTCAGAGCGTAACTTATCA 58.665 33.333 0.00 0.00 0.00 2.15
1467 1911 7.345192 CGCAAAATATTCAGAGCGTAACTTAT 58.655 34.615 12.63 0.00 40.25 1.73
1468 1912 6.237996 CCGCAAAATATTCAGAGCGTAACTTA 60.238 38.462 16.86 0.00 43.24 2.24
1470 1914 4.034048 CCGCAAAATATTCAGAGCGTAACT 59.966 41.667 16.86 0.00 43.24 2.24
1476 1920 5.821204 ACAATACCGCAAAATATTCAGAGC 58.179 37.500 0.00 0.00 0.00 4.09
1493 1948 4.273969 TGTCCTTGAAACCACGAACAATAC 59.726 41.667 0.00 0.00 0.00 1.89
1494 1949 4.452825 TGTCCTTGAAACCACGAACAATA 58.547 39.130 0.00 0.00 0.00 1.90
1495 1950 3.283751 TGTCCTTGAAACCACGAACAAT 58.716 40.909 0.00 0.00 0.00 2.71
1509 2030 0.307760 GTGCCACGTTCTTGTCCTTG 59.692 55.000 0.00 0.00 0.00 3.61
1531 2052 2.308722 CCTCTAGCCAGCCCCCAAA 61.309 63.158 0.00 0.00 0.00 3.28
1536 2057 3.470888 TTCGCCTCTAGCCAGCCC 61.471 66.667 0.00 0.00 38.78 5.19
1537 2058 2.202946 GTTCGCCTCTAGCCAGCC 60.203 66.667 0.00 0.00 38.78 4.85
1540 2061 2.579201 GCTGTTCGCCTCTAGCCA 59.421 61.111 0.00 0.00 38.78 4.75
1554 2075 5.049405 ACTTTGTGAAACTAAATCCTCGCTG 60.049 40.000 0.00 0.00 38.04 5.18
1559 2080 5.827797 TCTGCACTTTGTGAAACTAAATCCT 59.172 36.000 1.52 0.00 38.04 3.24
1560 2081 5.915196 GTCTGCACTTTGTGAAACTAAATCC 59.085 40.000 1.52 0.00 38.04 3.01
1581 2102 2.345244 CAAGGACGCTGGCTGTCT 59.655 61.111 13.63 0.00 36.58 3.41
1584 2105 2.786539 TAGTGCAAGGACGCTGGCTG 62.787 60.000 0.00 0.00 0.00 4.85
1588 2109 1.929836 GAATCTAGTGCAAGGACGCTG 59.070 52.381 0.00 0.00 0.00 5.18
1589 2110 1.827969 AGAATCTAGTGCAAGGACGCT 59.172 47.619 0.00 0.00 0.00 5.07
1590 2111 1.929836 CAGAATCTAGTGCAAGGACGC 59.070 52.381 0.00 0.00 0.00 5.19
1592 2113 3.196685 AGGACAGAATCTAGTGCAAGGAC 59.803 47.826 0.00 0.00 0.00 3.85
1594 2115 3.196469 TCAGGACAGAATCTAGTGCAAGG 59.804 47.826 0.00 0.00 0.00 3.61
1611 2134 3.826157 AGCGGAAAACAATTTGATCAGGA 59.174 39.130 2.79 0.00 0.00 3.86
1813 2339 3.771160 ACCTCCGTGGCGACCATC 61.771 66.667 1.90 0.00 40.22 3.51
1854 2380 1.906824 ACCCTGTCGTCGATGGTGT 60.907 57.895 11.76 8.54 0.00 4.16
2017 2543 3.649277 CTTCTCACCGCCCTCCACG 62.649 68.421 0.00 0.00 0.00 4.94
2029 2555 1.680522 GCATCCTCGCCCTCTTCTCA 61.681 60.000 0.00 0.00 0.00 3.27
2045 2571 3.121030 GTCGCCGTCAAGCAGCAT 61.121 61.111 0.00 0.00 0.00 3.79
2197 2723 0.588252 CACTGTCCACTCCAAAAGCG 59.412 55.000 0.00 0.00 0.00 4.68
2228 2754 0.320421 ACATTTCGGTGGGACGTCAG 60.320 55.000 18.91 3.00 34.94 3.51
2234 2760 1.002624 GCAGGACATTTCGGTGGGA 60.003 57.895 0.00 0.00 0.00 4.37
2237 2763 2.398554 CGGGCAGGACATTTCGGTG 61.399 63.158 0.00 0.00 0.00 4.94
2240 2766 3.864686 CGCGGGCAGGACATTTCG 61.865 66.667 0.00 0.00 0.00 3.46
2249 2775 2.398554 AATTAGCACACGCGGGCAG 61.399 57.895 9.12 1.51 45.49 4.85
2250 2776 2.359354 AATTAGCACACGCGGGCA 60.359 55.556 9.12 0.00 45.49 5.36
2266 2793 1.269517 CGGCTAAAACCAAGCAAGCAA 60.270 47.619 0.00 0.00 41.93 3.91
2273 2800 2.250188 CGCAATTCGGCTAAAACCAAG 58.750 47.619 0.00 0.00 33.78 3.61
2276 2803 1.198178 TCACGCAATTCGGCTAAAACC 59.802 47.619 3.09 0.00 43.86 3.27
2277 2804 2.095919 AGTCACGCAATTCGGCTAAAAC 60.096 45.455 3.09 0.00 43.86 2.43
2279 2806 1.463056 CAGTCACGCAATTCGGCTAAA 59.537 47.619 3.09 0.00 43.86 1.85
2280 2807 1.075542 CAGTCACGCAATTCGGCTAA 58.924 50.000 3.09 0.00 43.86 3.09
2281 2808 1.358725 GCAGTCACGCAATTCGGCTA 61.359 55.000 3.09 0.00 43.86 3.93
2282 2809 2.680913 GCAGTCACGCAATTCGGCT 61.681 57.895 3.09 0.00 43.86 5.52
2284 2811 1.573932 TTGCAGTCACGCAATTCGG 59.426 52.632 3.37 0.00 46.61 4.30
2292 2819 1.673760 CGGTCAAAATTGCAGTCACG 58.326 50.000 0.00 0.00 0.00 4.35
2293 2820 1.001378 AGCGGTCAAAATTGCAGTCAC 60.001 47.619 0.00 0.00 0.00 3.67
2294 2821 1.001487 CAGCGGTCAAAATTGCAGTCA 60.001 47.619 0.00 0.00 0.00 3.41
2295 2822 1.266718 TCAGCGGTCAAAATTGCAGTC 59.733 47.619 0.00 0.00 0.00 3.51
2296 2823 1.317613 TCAGCGGTCAAAATTGCAGT 58.682 45.000 0.00 0.00 0.00 4.40
2301 2836 2.890311 TGGAACATCAGCGGTCAAAATT 59.110 40.909 0.00 0.00 0.00 1.82
2314 2849 3.187022 GCACAAGGCAAATTTGGAACATC 59.813 43.478 19.47 1.77 43.97 3.06
2335 2871 2.157738 GCATATTGTCTCATCCCTGGC 58.842 52.381 0.00 0.00 0.00 4.85
2346 2882 7.999878 CGTGCATGAATAAAATTGCATATTGTC 59.000 33.333 0.00 0.00 45.80 3.18
2352 2888 4.121317 CCCGTGCATGAATAAAATTGCAT 58.879 39.130 7.72 0.00 45.80 3.96
2358 2894 2.520069 ACACCCCGTGCATGAATAAAA 58.480 42.857 7.72 0.00 36.98 1.52
2359 2895 2.208132 ACACCCCGTGCATGAATAAA 57.792 45.000 7.72 0.00 36.98 1.40
2360 2896 3.118223 TGATACACCCCGTGCATGAATAA 60.118 43.478 7.72 0.00 36.98 1.40
2361 2897 2.436173 TGATACACCCCGTGCATGAATA 59.564 45.455 7.72 0.00 36.98 1.75
2362 2898 1.211703 TGATACACCCCGTGCATGAAT 59.788 47.619 7.72 0.00 36.98 2.57
2363 2899 0.615850 TGATACACCCCGTGCATGAA 59.384 50.000 7.72 0.00 36.98 2.57
2364 2900 0.177836 CTGATACACCCCGTGCATGA 59.822 55.000 7.72 0.00 36.98 3.07
2365 2901 0.107703 ACTGATACACCCCGTGCATG 60.108 55.000 0.00 0.00 36.98 4.06
2366 2902 0.178068 GACTGATACACCCCGTGCAT 59.822 55.000 0.00 0.00 36.98 3.96
2367 2903 1.594833 GACTGATACACCCCGTGCA 59.405 57.895 0.00 0.00 36.98 4.57
2368 2904 1.153429 GGACTGATACACCCCGTGC 60.153 63.158 0.00 0.00 36.98 5.34
2369 2905 1.141019 CGGACTGATACACCCCGTG 59.859 63.158 0.00 0.00 39.75 4.94
2370 2906 3.612251 CGGACTGATACACCCCGT 58.388 61.111 0.00 0.00 35.83 5.28
2371 2907 0.248289 AAACGGACTGATACACCCCG 59.752 55.000 0.00 0.00 45.09 5.73
2372 2908 2.289819 TGAAAACGGACTGATACACCCC 60.290 50.000 0.00 0.00 0.00 4.95
2373 2909 2.740447 GTGAAAACGGACTGATACACCC 59.260 50.000 0.00 0.00 0.00 4.61
2374 2910 2.410730 CGTGAAAACGGACTGATACACC 59.589 50.000 0.00 0.00 0.00 4.16
2375 2911 3.700130 CGTGAAAACGGACTGATACAC 57.300 47.619 0.00 0.00 0.00 2.90
2386 2922 2.943653 GGAGGCACCGTGAAAACG 59.056 61.111 1.65 0.00 0.00 3.60
2405 2941 1.226435 GTCGACCGTAGCTGCTCAG 60.226 63.158 4.91 0.79 0.00 3.35
2406 2942 2.875485 GTCGACCGTAGCTGCTCA 59.125 61.111 4.91 0.00 0.00 4.26
2407 2943 2.049475 ATCGTCGACCGTAGCTGCTC 62.049 60.000 4.91 0.00 37.94 4.26
2408 2944 0.812811 TATCGTCGACCGTAGCTGCT 60.813 55.000 10.58 7.57 37.94 4.24
2409 2945 0.028505 TTATCGTCGACCGTAGCTGC 59.971 55.000 10.58 0.00 37.94 5.25
2410 2946 2.307929 CATTATCGTCGACCGTAGCTG 58.692 52.381 10.58 0.00 37.94 4.24
2411 2947 1.266175 CCATTATCGTCGACCGTAGCT 59.734 52.381 10.58 0.00 37.94 3.32
2412 2948 1.682982 CCATTATCGTCGACCGTAGC 58.317 55.000 10.58 0.00 37.94 3.58
2413 2949 1.682982 GCCATTATCGTCGACCGTAG 58.317 55.000 10.58 0.00 37.94 3.51
2414 2950 0.041047 CGCCATTATCGTCGACCGTA 60.041 55.000 10.58 0.00 37.94 4.02
2415 2951 1.298863 CGCCATTATCGTCGACCGT 60.299 57.895 10.58 0.91 37.94 4.83
2416 2952 2.645510 GCGCCATTATCGTCGACCG 61.646 63.158 10.58 6.10 38.13 4.79
2417 2953 1.149361 TTGCGCCATTATCGTCGACC 61.149 55.000 10.58 0.00 0.00 4.79
2418 2954 0.859232 ATTGCGCCATTATCGTCGAC 59.141 50.000 4.18 5.18 0.00 4.20
2419 2955 1.577468 AATTGCGCCATTATCGTCGA 58.423 45.000 4.18 0.00 0.00 4.20
2420 2956 2.298300 GAAATTGCGCCATTATCGTCG 58.702 47.619 7.19 0.00 0.00 5.12
2421 2957 2.286184 ACGAAATTGCGCCATTATCGTC 60.286 45.455 24.51 12.97 37.48 4.20
2422 2958 1.668751 ACGAAATTGCGCCATTATCGT 59.331 42.857 24.51 24.51 37.24 3.73
2423 2959 2.036217 CACGAAATTGCGCCATTATCG 58.964 47.619 23.67 23.67 35.16 2.92
2424 2960 2.783284 CACACGAAATTGCGCCATTATC 59.217 45.455 5.51 6.71 33.86 1.75
2425 2961 2.421775 TCACACGAAATTGCGCCATTAT 59.578 40.909 5.51 0.00 33.86 1.28
2426 2962 1.807142 TCACACGAAATTGCGCCATTA 59.193 42.857 5.51 0.00 33.86 1.90
2427 2963 0.595588 TCACACGAAATTGCGCCATT 59.404 45.000 5.51 1.83 33.86 3.16
2428 2964 0.810648 ATCACACGAAATTGCGCCAT 59.189 45.000 5.51 0.00 33.86 4.40
2429 2965 0.595588 AATCACACGAAATTGCGCCA 59.404 45.000 5.51 0.00 33.86 5.69
2430 2966 1.386412 CAAATCACACGAAATTGCGCC 59.614 47.619 5.51 0.00 33.86 6.53
2431 2967 1.201693 GCAAATCACACGAAATTGCGC 60.202 47.619 5.51 0.00 37.90 6.09
2432 2968 2.049959 TGCAAATCACACGAAATTGCG 58.950 42.857 3.68 3.68 44.66 4.85
2433 2969 3.490526 ACTTGCAAATCACACGAAATTGC 59.509 39.130 0.00 2.07 43.26 3.56
2434 2970 4.739228 TGACTTGCAAATCACACGAAATTG 59.261 37.500 6.47 0.00 0.00 2.32
2435 2971 4.930963 TGACTTGCAAATCACACGAAATT 58.069 34.783 6.47 0.00 0.00 1.82
2436 2972 4.566545 TGACTTGCAAATCACACGAAAT 57.433 36.364 6.47 0.00 0.00 2.17
2437 2973 4.101942 GTTGACTTGCAAATCACACGAAA 58.898 39.130 10.63 0.00 38.44 3.46
2438 2974 3.488384 GGTTGACTTGCAAATCACACGAA 60.488 43.478 10.63 0.00 38.44 3.85
2439 2975 2.032799 GGTTGACTTGCAAATCACACGA 59.967 45.455 10.63 0.00 38.44 4.35
2440 2976 2.223456 TGGTTGACTTGCAAATCACACG 60.223 45.455 10.63 0.00 38.44 4.49
2441 2977 3.435105 TGGTTGACTTGCAAATCACAC 57.565 42.857 10.63 11.48 38.44 3.82
2442 2978 4.462508 TTTGGTTGACTTGCAAATCACA 57.537 36.364 10.63 3.51 38.44 3.58
2443 2979 5.793026 TTTTTGGTTGACTTGCAAATCAC 57.207 34.783 10.63 6.06 38.44 3.06
2477 3013 4.695217 AAGTGCTGACGTTTCTCAAAAA 57.305 36.364 0.00 0.00 0.00 1.94
2478 3014 4.695217 AAAGTGCTGACGTTTCTCAAAA 57.305 36.364 0.00 0.00 0.00 2.44
2479 3015 6.371809 AATAAAGTGCTGACGTTTCTCAAA 57.628 33.333 0.00 0.00 0.00 2.69
2480 3016 7.485418 TTAATAAAGTGCTGACGTTTCTCAA 57.515 32.000 0.00 0.00 0.00 3.02
2481 3017 7.386573 TGATTAATAAAGTGCTGACGTTTCTCA 59.613 33.333 0.00 0.00 0.00 3.27
2482 3018 7.739295 TGATTAATAAAGTGCTGACGTTTCTC 58.261 34.615 0.00 0.00 0.00 2.87
2483 3019 7.667043 TGATTAATAAAGTGCTGACGTTTCT 57.333 32.000 0.00 0.00 0.00 2.52
2484 3020 7.007456 GCTTGATTAATAAAGTGCTGACGTTTC 59.993 37.037 13.19 0.00 0.00 2.78
2485 3021 6.801862 GCTTGATTAATAAAGTGCTGACGTTT 59.198 34.615 13.19 0.00 0.00 3.60
2486 3022 6.314784 GCTTGATTAATAAAGTGCTGACGTT 58.685 36.000 13.19 0.00 0.00 3.99
2487 3023 5.445939 CGCTTGATTAATAAAGTGCTGACGT 60.446 40.000 12.24 0.00 0.00 4.34
2488 3024 4.957967 CGCTTGATTAATAAAGTGCTGACG 59.042 41.667 12.24 4.00 0.00 4.35
2489 3025 5.960105 GTCGCTTGATTAATAAAGTGCTGAC 59.040 40.000 18.03 13.87 34.60 3.51
2490 3026 5.641636 TGTCGCTTGATTAATAAAGTGCTGA 59.358 36.000 18.03 7.66 34.60 4.26
2491 3027 5.868257 TGTCGCTTGATTAATAAAGTGCTG 58.132 37.500 18.03 5.83 34.60 4.41
2492 3028 6.683974 ATGTCGCTTGATTAATAAAGTGCT 57.316 33.333 18.03 5.81 34.60 4.40
2493 3029 8.835467 TTTATGTCGCTTGATTAATAAAGTGC 57.165 30.769 18.03 14.10 34.60 4.40
2502 3038 9.378551 ACTCTTTGTATTTATGTCGCTTGATTA 57.621 29.630 0.00 0.00 0.00 1.75
2503 3039 8.268850 ACTCTTTGTATTTATGTCGCTTGATT 57.731 30.769 0.00 0.00 0.00 2.57
2504 3040 7.011482 GGACTCTTTGTATTTATGTCGCTTGAT 59.989 37.037 0.00 0.00 0.00 2.57
2505 3041 6.312918 GGACTCTTTGTATTTATGTCGCTTGA 59.687 38.462 0.00 0.00 0.00 3.02
2506 3042 6.478588 GGACTCTTTGTATTTATGTCGCTTG 58.521 40.000 0.00 0.00 0.00 4.01
2507 3043 5.291128 CGGACTCTTTGTATTTATGTCGCTT 59.709 40.000 0.00 0.00 0.00 4.68
2508 3044 4.804139 CGGACTCTTTGTATTTATGTCGCT 59.196 41.667 0.00 0.00 0.00 4.93
2509 3045 4.025979 CCGGACTCTTTGTATTTATGTCGC 60.026 45.833 0.00 0.00 0.00 5.19
2510 3046 4.506654 CCCGGACTCTTTGTATTTATGTCG 59.493 45.833 0.73 0.00 0.00 4.35
2511 3047 5.667466 TCCCGGACTCTTTGTATTTATGTC 58.333 41.667 0.73 0.00 0.00 3.06
2512 3048 5.687166 TCCCGGACTCTTTGTATTTATGT 57.313 39.130 0.73 0.00 0.00 2.29
2513 3049 7.214381 TGTATCCCGGACTCTTTGTATTTATG 58.786 38.462 0.73 0.00 0.00 1.90
2514 3050 7.070821 ACTGTATCCCGGACTCTTTGTATTTAT 59.929 37.037 0.73 0.00 0.00 1.40
2515 3051 6.381994 ACTGTATCCCGGACTCTTTGTATTTA 59.618 38.462 0.73 0.00 0.00 1.40
2516 3052 5.189145 ACTGTATCCCGGACTCTTTGTATTT 59.811 40.000 0.73 0.00 0.00 1.40
2517 3053 4.715297 ACTGTATCCCGGACTCTTTGTATT 59.285 41.667 0.73 0.00 0.00 1.89
2518 3054 4.287552 ACTGTATCCCGGACTCTTTGTAT 58.712 43.478 0.73 0.00 0.00 2.29
2519 3055 3.698040 GACTGTATCCCGGACTCTTTGTA 59.302 47.826 0.73 0.00 0.00 2.41
2520 3056 2.496470 GACTGTATCCCGGACTCTTTGT 59.504 50.000 0.73 0.00 0.00 2.83
2521 3057 2.159085 GGACTGTATCCCGGACTCTTTG 60.159 54.545 0.73 0.00 42.46 2.77
2522 3058 2.108970 GGACTGTATCCCGGACTCTTT 58.891 52.381 0.73 0.00 42.46 2.52
2523 3059 1.777941 GGACTGTATCCCGGACTCTT 58.222 55.000 0.73 0.00 42.46 2.85
2524 3060 0.465824 CGGACTGTATCCCGGACTCT 60.466 60.000 0.73 0.00 46.04 3.24
2525 3061 2.031360 CGGACTGTATCCCGGACTC 58.969 63.158 0.73 0.00 46.04 3.36
2526 3062 4.254721 CGGACTGTATCCCGGACT 57.745 61.111 0.73 0.00 46.04 3.85
2530 3066 2.125326 TGCTCCGGACTGTATCCCG 61.125 63.158 0.00 0.00 46.04 5.14
2531 3067 1.327690 TGTGCTCCGGACTGTATCCC 61.328 60.000 0.00 0.00 46.04 3.85
2532 3068 0.535335 TTGTGCTCCGGACTGTATCC 59.465 55.000 0.00 0.00 45.20 2.59
2533 3069 1.471676 CCTTGTGCTCCGGACTGTATC 60.472 57.143 0.00 0.00 0.00 2.24
2534 3070 0.537188 CCTTGTGCTCCGGACTGTAT 59.463 55.000 0.00 0.00 0.00 2.29
2535 3071 0.541063 TCCTTGTGCTCCGGACTGTA 60.541 55.000 0.00 0.00 0.00 2.74
2536 3072 1.407656 TTCCTTGTGCTCCGGACTGT 61.408 55.000 0.00 0.00 0.00 3.55
2537 3073 0.250295 TTTCCTTGTGCTCCGGACTG 60.250 55.000 0.00 0.00 0.00 3.51
2538 3074 0.472471 TTTTCCTTGTGCTCCGGACT 59.528 50.000 0.00 0.00 0.00 3.85
2539 3075 0.875059 CTTTTCCTTGTGCTCCGGAC 59.125 55.000 0.00 0.00 0.00 4.79
2540 3076 0.762418 TCTTTTCCTTGTGCTCCGGA 59.238 50.000 2.93 2.93 0.00 5.14
2541 3077 1.740025 GATCTTTTCCTTGTGCTCCGG 59.260 52.381 0.00 0.00 0.00 5.14
2542 3078 1.740025 GGATCTTTTCCTTGTGCTCCG 59.260 52.381 0.00 0.00 41.78 4.63
2543 3079 2.095461 GGGATCTTTTCCTTGTGCTCC 58.905 52.381 0.00 0.00 44.75 4.70
2544 3080 3.078891 AGGGATCTTTTCCTTGTGCTC 57.921 47.619 0.00 0.00 44.75 4.26
2545 3081 3.846588 TCTAGGGATCTTTTCCTTGTGCT 59.153 43.478 0.00 0.00 44.75 4.40
2546 3082 4.195416 CTCTAGGGATCTTTTCCTTGTGC 58.805 47.826 0.00 0.00 44.75 4.57
2547 3083 5.428184 ACTCTAGGGATCTTTTCCTTGTG 57.572 43.478 0.00 0.00 44.75 3.33
2548 3084 5.548056 TGAACTCTAGGGATCTTTTCCTTGT 59.452 40.000 0.00 0.00 44.75 3.16
2549 3085 5.877564 GTGAACTCTAGGGATCTTTTCCTTG 59.122 44.000 0.00 0.00 44.75 3.61
2550 3086 5.548056 TGTGAACTCTAGGGATCTTTTCCTT 59.452 40.000 0.00 0.00 44.75 3.36
2551 3087 5.046231 GTGTGAACTCTAGGGATCTTTTCCT 60.046 44.000 0.00 0.00 44.75 3.36
2552 3088 5.179533 GTGTGAACTCTAGGGATCTTTTCC 58.820 45.833 0.00 0.00 44.62 3.13
2553 3089 5.794894 TGTGTGAACTCTAGGGATCTTTTC 58.205 41.667 0.00 0.00 0.00 2.29
2554 3090 5.825593 TGTGTGAACTCTAGGGATCTTTT 57.174 39.130 0.00 0.00 0.00 2.27
2555 3091 5.071788 TGTTGTGTGAACTCTAGGGATCTTT 59.928 40.000 0.00 0.00 0.00 2.52
2556 3092 4.593206 TGTTGTGTGAACTCTAGGGATCTT 59.407 41.667 0.00 0.00 0.00 2.40
2557 3093 4.021016 GTGTTGTGTGAACTCTAGGGATCT 60.021 45.833 0.00 0.00 0.00 2.75
2558 3094 4.021016 AGTGTTGTGTGAACTCTAGGGATC 60.021 45.833 0.00 0.00 0.00 3.36
2559 3095 3.904339 AGTGTTGTGTGAACTCTAGGGAT 59.096 43.478 0.00 0.00 0.00 3.85
2560 3096 3.305720 AGTGTTGTGTGAACTCTAGGGA 58.694 45.455 0.00 0.00 0.00 4.20
2561 3097 3.753294 AGTGTTGTGTGAACTCTAGGG 57.247 47.619 0.00 0.00 0.00 3.53
2562 3098 6.085555 TCTAAGTGTTGTGTGAACTCTAGG 57.914 41.667 0.00 0.00 0.00 3.02
2563 3099 5.631512 GCTCTAAGTGTTGTGTGAACTCTAG 59.368 44.000 0.00 0.00 0.00 2.43
2564 3100 5.068591 TGCTCTAAGTGTTGTGTGAACTCTA 59.931 40.000 0.00 0.00 0.00 2.43
2565 3101 4.141937 TGCTCTAAGTGTTGTGTGAACTCT 60.142 41.667 0.00 0.00 0.00 3.24
2566 3102 4.119862 TGCTCTAAGTGTTGTGTGAACTC 58.880 43.478 0.00 0.00 0.00 3.01
2567 3103 4.137116 TGCTCTAAGTGTTGTGTGAACT 57.863 40.909 0.00 0.00 0.00 3.01
2568 3104 4.332819 AGTTGCTCTAAGTGTTGTGTGAAC 59.667 41.667 0.00 0.00 0.00 3.18
2569 3105 4.513442 AGTTGCTCTAAGTGTTGTGTGAA 58.487 39.130 0.00 0.00 0.00 3.18
2570 3106 4.119862 GAGTTGCTCTAAGTGTTGTGTGA 58.880 43.478 0.00 0.00 0.00 3.58
2571 3107 3.248602 GGAGTTGCTCTAAGTGTTGTGTG 59.751 47.826 0.00 0.00 0.00 3.82
2572 3108 3.118408 TGGAGTTGCTCTAAGTGTTGTGT 60.118 43.478 0.00 0.00 0.00 3.72
2573 3109 3.466836 TGGAGTTGCTCTAAGTGTTGTG 58.533 45.455 0.00 0.00 0.00 3.33
2574 3110 3.838244 TGGAGTTGCTCTAAGTGTTGT 57.162 42.857 0.00 0.00 0.00 3.32
2575 3111 4.083110 CCATTGGAGTTGCTCTAAGTGTTG 60.083 45.833 0.00 0.00 34.66 3.33
2576 3112 4.074970 CCATTGGAGTTGCTCTAAGTGTT 58.925 43.478 0.00 0.00 34.66 3.32
2577 3113 3.560025 CCCATTGGAGTTGCTCTAAGTGT 60.560 47.826 3.62 0.00 34.66 3.55
2578 3114 3.012518 CCCATTGGAGTTGCTCTAAGTG 58.987 50.000 3.62 1.42 34.66 3.16
2579 3115 2.912956 TCCCATTGGAGTTGCTCTAAGT 59.087 45.455 3.62 0.00 34.66 2.24
2580 3116 3.634397 TCCCATTGGAGTTGCTCTAAG 57.366 47.619 3.62 0.00 34.66 2.18
2668 3207 3.755628 TAGCAGGCGGACACGGAC 61.756 66.667 0.00 0.00 41.36 4.79
2669 3208 3.755628 GTAGCAGGCGGACACGGA 61.756 66.667 0.00 0.00 41.36 4.69
2677 3216 2.279517 GGATGTCCGTAGCAGGCG 60.280 66.667 0.00 0.00 0.00 5.52
2691 3230 4.457496 CAGCAGGCGGACACGGAT 62.457 66.667 0.00 0.00 41.36 4.18
2848 3416 4.265056 ACCAACACCGGTGGCCTC 62.265 66.667 36.47 0.00 38.07 4.70
2958 3529 2.603473 ACCTGTGCAGACGGCCTA 60.603 61.111 0.00 0.00 43.89 3.93
3202 3790 4.150454 CGCCCCTCCTCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
3204 3792 4.144727 TCCGCCCCTCCTCTCTCC 62.145 72.222 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.