Multiple sequence alignment - TraesCS7A01G354700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G354700 chr7A 100.000 6875 0 0 1 6875 519104307 519111181 0.000000e+00 12696.0
1 TraesCS7A01G354700 chr7B 92.401 4277 264 35 2051 6285 500779259 500775002 0.000000e+00 6041.0
2 TraesCS7A01G354700 chr7B 83.706 1117 92 42 658 1742 500790049 500788991 0.000000e+00 972.0
3 TraesCS7A01G354700 chr7B 80.565 283 22 19 6574 6846 500772861 500772602 3.270000e-43 187.0
4 TraesCS7A01G354700 chr7D 90.479 4380 347 41 1954 6292 476700104 476695754 0.000000e+00 5714.0
5 TraesCS7A01G354700 chr7D 82.007 1156 90 50 632 1742 476701525 476700443 0.000000e+00 874.0
6 TraesCS7A01G354700 chr7D 95.113 266 6 2 1 259 626436649 626436384 4.960000e-111 412.0
7 TraesCS7A01G354700 chr7D 85.841 339 21 9 259 587 626436261 626435940 1.100000e-87 335.0
8 TraesCS7A01G354700 chr7D 83.684 190 14 11 6680 6861 476695052 476694872 5.520000e-36 163.0
9 TraesCS7A01G354700 chr6A 93.009 329 16 1 259 587 85614927 85614606 2.240000e-129 473.0
10 TraesCS7A01G354700 chr6A 95.849 265 5 1 1 259 85615314 85615050 2.290000e-114 424.0
11 TraesCS7A01G354700 chr6D 89.521 334 24 4 264 587 138402196 138401864 4.960000e-111 412.0
12 TraesCS7A01G354700 chr6D 93.511 262 11 2 4 259 138416232 138415971 1.080000e-102 385.0
13 TraesCS7A01G354700 chr6D 91.908 173 12 2 1783 1954 438321905 438321734 2.480000e-59 241.0
14 TraesCS7A01G354700 chr6D 91.011 178 13 3 1785 1960 351246332 351246508 3.210000e-58 237.0
15 TraesCS7A01G354700 chr4D 94.444 162 9 0 1793 1954 64390471 64390632 4.120000e-62 250.0
16 TraesCS7A01G354700 chr4D 92.857 168 12 0 1787 1954 326379865 326380032 1.920000e-60 244.0
17 TraesCS7A01G354700 chr4D 95.652 92 3 1 653 744 7906034 7905944 5.560000e-31 147.0
18 TraesCS7A01G354700 chr4D 91.379 58 2 3 580 636 100753753 100753808 7.390000e-10 76.8
19 TraesCS7A01G354700 chr4B 93.452 168 11 0 1787 1954 406389290 406389457 4.120000e-62 250.0
20 TraesCS7A01G354700 chr4B 92.233 103 6 2 653 754 14344369 14344268 2.000000e-30 145.0
21 TraesCS7A01G354700 chr4A 93.452 168 10 1 1791 1958 683889114 683889280 1.480000e-61 248.0
22 TraesCS7A01G354700 chr4A 90.811 185 16 1 404 587 740130171 740130355 5.330000e-61 246.0
23 TraesCS7A01G354700 chr4A 92.045 176 11 3 1782 1954 405565166 405565341 1.920000e-60 244.0
24 TraesCS7A01G354700 chr4A 93.293 164 4 2 2 159 740129743 740129905 1.150000e-57 235.0
25 TraesCS7A01G354700 chrUn 93.293 164 11 0 1791 1954 320881576 320881739 6.890000e-60 243.0
26 TraesCS7A01G354700 chr1A 91.860 172 14 0 1784 1955 295587967 295588138 2.480000e-59 241.0
27 TraesCS7A01G354700 chr1A 94.898 98 1 4 646 742 571561572 571561478 4.300000e-32 150.0
28 TraesCS7A01G354700 chr1A 91.667 60 2 3 579 637 418061854 418061911 5.720000e-11 80.5
29 TraesCS7A01G354700 chr2D 96.703 91 1 2 653 742 76863294 76863383 4.300000e-32 150.0
30 TraesCS7A01G354700 chr1B 94.792 96 3 2 662 756 661578431 661578337 1.540000e-31 148.0
31 TraesCS7A01G354700 chr1B 95.699 93 1 3 650 742 661494100 661494189 5.560000e-31 147.0
32 TraesCS7A01G354700 chr1B 93.878 98 4 2 645 742 661598545 661598450 5.560000e-31 147.0
33 TraesCS7A01G354700 chr3B 93.103 58 1 3 578 634 508759326 508759271 1.590000e-11 82.4
34 TraesCS7A01G354700 chr2A 87.324 71 5 4 567 635 737859396 737859328 2.060000e-10 78.7
35 TraesCS7A01G354700 chr2A 85.915 71 6 4 567 635 737900898 737900830 9.560000e-09 73.1
36 TraesCS7A01G354700 chr2A 90.741 54 4 1 582 635 200173944 200173892 3.440000e-08 71.3
37 TraesCS7A01G354700 chr3A 90.000 50 3 2 573 621 735829802 735829850 5.760000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G354700 chr7A 519104307 519111181 6874 False 12696.000000 12696 100.000 1 6875 1 chr7A.!!$F1 6874
1 TraesCS7A01G354700 chr7B 500772602 500779259 6657 True 3114.000000 6041 86.483 2051 6846 2 chr7B.!!$R2 4795
2 TraesCS7A01G354700 chr7B 500788991 500790049 1058 True 972.000000 972 83.706 658 1742 1 chr7B.!!$R1 1084
3 TraesCS7A01G354700 chr7D 476694872 476701525 6653 True 2250.333333 5714 85.390 632 6861 3 chr7D.!!$R1 6229
4 TraesCS7A01G354700 chr7D 626435940 626436649 709 True 373.500000 412 90.477 1 587 2 chr7D.!!$R2 586
5 TraesCS7A01G354700 chr6A 85614606 85615314 708 True 448.500000 473 94.429 1 587 2 chr6A.!!$R1 586
6 TraesCS7A01G354700 chr4A 740129743 740130355 612 False 240.500000 246 92.052 2 587 2 chr4A.!!$F3 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 595 0.903454 GGGAGGGAAGAAGACACCGA 60.903 60.0 0.00 0.0 0.00 4.69 F
1225 1409 0.171903 GAAGCCGCATTGCAATCAGT 59.828 50.0 9.53 0.0 0.00 3.41 F
1557 1747 0.322456 TCGCCCAACAGAAAGGATGG 60.322 55.0 0.00 0.0 0.00 3.51 F
1558 1748 0.322456 CGCCCAACAGAAAGGATGGA 60.322 55.0 0.00 0.0 34.82 3.41 F
1985 2304 0.394565 GGACACTGTCTCAAGGCACT 59.605 55.0 9.08 0.0 33.90 4.40 F
3079 3436 1.032014 TGAAGAAAACTGGCTGGTGC 58.968 50.0 0.00 0.0 38.76 5.01 F
3415 3775 0.527565 CTTGCCCACCACAAGCATAC 59.472 55.0 0.00 0.0 38.23 2.39 F
3430 3790 0.605319 CATACCAGCAACACCACGGT 60.605 55.0 0.00 0.0 0.00 4.83 F
4340 4700 0.109342 AGCCTGGAGGTGTTCACTTG 59.891 55.0 0.00 0.0 37.57 3.16 F
5734 6094 0.324285 CTCACAGCCTGAGGAAAGCT 59.676 55.0 0.65 0.0 42.69 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 2130 0.251519 AACGTACTCCCTCCGTTCCT 60.252 55.0 0.00 0.00 40.46 3.36 R
2510 2856 0.394488 TGTTGTTTGAAGCACCCCGA 60.394 50.0 0.00 0.00 0.00 5.14 R
2522 2868 0.529555 GCGTGCCCAACATGTTGTTT 60.530 50.0 31.20 0.00 38.77 2.83 R
3079 3436 0.538118 CAAATCAATGGCCCCACTGG 59.462 55.0 0.00 0.00 37.09 4.00 R
3384 3744 0.623194 TGGGCAAGCTTGTATAGGCA 59.377 50.0 26.55 2.46 0.00 4.75 R
4202 4562 0.469331 ATGCATGCCATCAGGAAGGG 60.469 55.0 16.68 0.00 36.89 3.95 R
4340 4700 0.539986 TGCCTCTGTATCCCGGAAAC 59.460 55.0 0.73 0.00 0.00 2.78 R
5180 5540 1.032014 TCTTTTCACAGCAACCTGCC 58.968 50.0 0.00 0.00 46.52 4.85 R
5820 6180 0.179129 GCGCCACTTCATCCAAATGG 60.179 55.0 0.00 0.00 33.42 3.16 R
6545 8799 0.657840 GACGGAATTTCATGCGGAGG 59.342 55.0 0.00 0.00 38.57 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 206 8.749026 AACTTCAGAGATAACGTAAGGATCTA 57.251 34.615 0.00 0.00 42.17 1.98
290 421 5.006746 GGATTGATACTTAGCGTTGGTGAAG 59.993 44.000 0.00 0.00 0.00 3.02
292 423 4.890088 TGATACTTAGCGTTGGTGAAGTT 58.110 39.130 0.00 0.00 34.15 2.66
300 431 1.070134 CGTTGGTGAAGTTCCAGAGGA 59.930 52.381 0.00 0.00 36.28 3.71
319 450 5.587844 AGAGGACAATTGTATTCATGAGCAC 59.412 40.000 11.95 0.00 0.00 4.40
407 548 2.099921 CTGGAACATCAGAGGTAGACGG 59.900 54.545 0.00 0.00 38.20 4.79
424 565 3.007473 ACGGAGTGGAAAGTGGAAAAA 57.993 42.857 0.00 0.00 42.51 1.94
433 574 5.869344 GTGGAAAGTGGAAAAATCAATAGCC 59.131 40.000 0.00 0.00 0.00 3.93
454 595 0.903454 GGGAGGGAAGAAGACACCGA 60.903 60.000 0.00 0.00 0.00 4.69
479 620 7.898014 AGATACCAAAACTTTTGGACTTCTT 57.102 32.000 31.58 15.63 42.06 2.52
507 648 6.316140 TGCGCTCTAATCATAAAACTGAATGT 59.684 34.615 9.73 0.00 0.00 2.71
564 706 2.512692 ATGCTGAGGTGGCACATTTA 57.487 45.000 20.82 5.00 44.52 1.40
578 720 3.821033 GCACATTTACTGAGTTGGAAGGT 59.179 43.478 0.00 0.00 0.00 3.50
587 729 3.030291 TGAGTTGGAAGGTTGCATGTTT 58.970 40.909 0.00 0.00 0.00 2.83
588 730 3.450457 TGAGTTGGAAGGTTGCATGTTTT 59.550 39.130 0.00 0.00 0.00 2.43
589 731 4.646945 TGAGTTGGAAGGTTGCATGTTTTA 59.353 37.500 0.00 0.00 0.00 1.52
590 732 5.200368 AGTTGGAAGGTTGCATGTTTTAG 57.800 39.130 0.00 0.00 0.00 1.85
591 733 4.892934 AGTTGGAAGGTTGCATGTTTTAGA 59.107 37.500 0.00 0.00 0.00 2.10
592 734 5.539955 AGTTGGAAGGTTGCATGTTTTAGAT 59.460 36.000 0.00 0.00 0.00 1.98
593 735 6.719370 AGTTGGAAGGTTGCATGTTTTAGATA 59.281 34.615 0.00 0.00 0.00 1.98
594 736 7.232534 AGTTGGAAGGTTGCATGTTTTAGATAA 59.767 33.333 0.00 0.00 0.00 1.75
595 737 7.531857 TGGAAGGTTGCATGTTTTAGATAAA 57.468 32.000 0.00 0.00 0.00 1.40
596 738 8.133024 TGGAAGGTTGCATGTTTTAGATAAAT 57.867 30.769 0.00 0.00 0.00 1.40
597 739 9.249053 TGGAAGGTTGCATGTTTTAGATAAATA 57.751 29.630 0.00 0.00 0.00 1.40
615 757 9.440761 AGATAAATAAGATAGTGAGGGTGAACT 57.559 33.333 0.00 0.00 0.00 3.01
619 761 9.588096 AAATAAGATAGTGAGGGTGAACTTTTT 57.412 29.630 0.00 0.00 0.00 1.94
622 764 8.622948 AAGATAGTGAGGGTGAACTTTTTAAG 57.377 34.615 0.00 0.00 0.00 1.85
623 765 7.746703 AGATAGTGAGGGTGAACTTTTTAAGT 58.253 34.615 0.00 0.00 45.46 2.24
624 766 8.877195 AGATAGTGAGGGTGAACTTTTTAAGTA 58.123 33.333 0.00 0.00 41.91 2.24
625 767 9.668497 GATAGTGAGGGTGAACTTTTTAAGTAT 57.332 33.333 0.00 0.00 41.91 2.12
654 796 9.349713 AGGATTACAGTGAACAAACAGAATAAA 57.650 29.630 0.00 0.00 0.00 1.40
744 891 1.486726 CCACTAGACCATGGGACCTTC 59.513 57.143 18.09 3.70 31.83 3.46
753 900 2.555199 CATGGGACCTTCGATGTCTTC 58.445 52.381 13.38 8.28 33.22 2.87
754 901 1.639722 TGGGACCTTCGATGTCTTCA 58.360 50.000 13.38 10.14 33.22 3.02
907 1064 1.520787 CGGCCGGAACACATACCTC 60.521 63.158 20.10 0.00 0.00 3.85
941 1103 2.667536 AGGCAGCGTGCTCTGTTG 60.668 61.111 9.31 0.00 44.28 3.33
968 1130 1.610102 GCGTCTAGCCGGTATCTAGGA 60.610 57.143 12.88 0.66 40.81 2.94
973 1135 4.340381 GTCTAGCCGGTATCTAGGAAAACA 59.660 45.833 12.88 0.00 35.43 2.83
975 1137 3.105283 AGCCGGTATCTAGGAAAACAGT 58.895 45.455 1.90 0.00 0.00 3.55
985 1147 1.452145 GGAAAACAGTTGCCTCCGCA 61.452 55.000 0.00 0.00 45.49 5.69
1001 1163 3.554342 CAGCTCCGCCCTAGCCAT 61.554 66.667 0.00 0.00 41.02 4.40
1013 1175 2.210013 TAGCCATGCCCGCTAGGAG 61.210 63.158 0.00 0.00 41.02 3.69
1016 1178 2.423446 CATGCCCGCTAGGAGGTC 59.577 66.667 0.00 0.00 41.02 3.85
1017 1179 3.227276 ATGCCCGCTAGGAGGTCG 61.227 66.667 0.00 0.00 41.02 4.79
1055 1217 1.421485 CGAAATGCGCAGGTGAGAC 59.579 57.895 18.32 1.94 0.00 3.36
1110 1280 2.025605 TGCTCTCCTCATGCCATCTTTT 60.026 45.455 0.00 0.00 0.00 2.27
1111 1281 2.358267 GCTCTCCTCATGCCATCTTTTG 59.642 50.000 0.00 0.00 0.00 2.44
1116 1287 4.151121 TCCTCATGCCATCTTTTGTTTCA 58.849 39.130 0.00 0.00 0.00 2.69
1153 1325 3.860930 TTGCGGGGGCTGTTTCCTC 62.861 63.158 0.00 0.00 0.00 3.71
1222 1406 3.987187 CGAAGCCGCATTGCAATC 58.013 55.556 9.53 3.97 0.00 2.67
1224 1408 0.864377 CGAAGCCGCATTGCAATCAG 60.864 55.000 9.53 6.33 0.00 2.90
1225 1409 0.171903 GAAGCCGCATTGCAATCAGT 59.828 50.000 9.53 0.00 0.00 3.41
1226 1410 0.604578 AAGCCGCATTGCAATCAGTT 59.395 45.000 9.53 0.00 0.00 3.16
1227 1411 0.604578 AGCCGCATTGCAATCAGTTT 59.395 45.000 9.53 0.00 0.00 2.66
1228 1412 1.001181 AGCCGCATTGCAATCAGTTTT 59.999 42.857 9.53 0.00 0.00 2.43
1229 1413 1.799994 GCCGCATTGCAATCAGTTTTT 59.200 42.857 9.53 0.00 0.00 1.94
1230 1414 2.411806 GCCGCATTGCAATCAGTTTTTG 60.412 45.455 9.53 0.00 0.00 2.44
1231 1415 2.801679 CCGCATTGCAATCAGTTTTTGT 59.198 40.909 9.53 0.00 0.00 2.83
1232 1416 3.248125 CCGCATTGCAATCAGTTTTTGTT 59.752 39.130 9.53 0.00 0.00 2.83
1233 1417 4.448005 CGCATTGCAATCAGTTTTTGTTC 58.552 39.130 9.53 0.00 0.00 3.18
1234 1418 4.209703 CGCATTGCAATCAGTTTTTGTTCT 59.790 37.500 9.53 0.00 0.00 3.01
1235 1419 5.437263 GCATTGCAATCAGTTTTTGTTCTG 58.563 37.500 9.53 0.00 0.00 3.02
1236 1420 5.006941 GCATTGCAATCAGTTTTTGTTCTGT 59.993 36.000 9.53 0.00 33.89 3.41
1237 1421 6.457257 GCATTGCAATCAGTTTTTGTTCTGTT 60.457 34.615 9.53 0.00 33.89 3.16
1238 1422 6.645700 TTGCAATCAGTTTTTGTTCTGTTC 57.354 33.333 0.00 0.00 33.89 3.18
1239 1423 5.964758 TGCAATCAGTTTTTGTTCTGTTCT 58.035 33.333 0.00 0.00 33.89 3.01
1240 1424 5.806502 TGCAATCAGTTTTTGTTCTGTTCTG 59.193 36.000 0.00 0.00 33.89 3.02
1241 1425 5.807011 GCAATCAGTTTTTGTTCTGTTCTGT 59.193 36.000 0.00 0.00 33.89 3.41
1242 1426 6.311200 GCAATCAGTTTTTGTTCTGTTCTGTT 59.689 34.615 0.00 0.00 33.89 3.16
1243 1427 7.669098 CAATCAGTTTTTGTTCTGTTCTGTTG 58.331 34.615 0.00 0.00 33.89 3.33
1244 1428 5.708948 TCAGTTTTTGTTCTGTTCTGTTGG 58.291 37.500 0.00 0.00 33.89 3.77
1245 1429 5.242838 TCAGTTTTTGTTCTGTTCTGTTGGT 59.757 36.000 0.00 0.00 33.89 3.67
1246 1430 6.431543 TCAGTTTTTGTTCTGTTCTGTTGGTA 59.568 34.615 0.00 0.00 33.89 3.25
1247 1431 7.040340 TCAGTTTTTGTTCTGTTCTGTTGGTAA 60.040 33.333 0.00 0.00 33.89 2.85
1248 1432 7.596995 CAGTTTTTGTTCTGTTCTGTTGGTAAA 59.403 33.333 0.00 0.00 0.00 2.01
1257 1441 6.995686 TCTGTTCTGTTGGTAAAATAGCTTGA 59.004 34.615 0.00 0.00 0.00 3.02
1263 1447 7.604927 TCTGTTGGTAAAATAGCTTGATAACGT 59.395 33.333 0.00 0.00 0.00 3.99
1274 1458 5.730550 AGCTTGATAACGTTAGGTGATGAA 58.269 37.500 14.25 0.00 0.00 2.57
1282 1467 5.871396 ACGTTAGGTGATGAATACTCCAT 57.129 39.130 0.00 0.00 0.00 3.41
1323 1508 3.833070 TGGGTGTTTGTTTGTGGTTAGTT 59.167 39.130 0.00 0.00 0.00 2.24
1324 1509 5.014858 TGGGTGTTTGTTTGTGGTTAGTTA 58.985 37.500 0.00 0.00 0.00 2.24
1338 1527 7.221450 TGTGGTTAGTTAGTAGCAATCAGTTT 58.779 34.615 0.00 0.00 0.00 2.66
1436 1626 7.027778 ACGACTGGCCTATTTTATTTTGATC 57.972 36.000 3.32 0.00 0.00 2.92
1443 1633 9.743057 TGGCCTATTTTATTTTGATCGTTATTG 57.257 29.630 3.32 0.00 0.00 1.90
1450 1640 3.961477 TTTGATCGTTATTGGCATCGG 57.039 42.857 0.00 0.00 0.00 4.18
1452 1642 3.737032 TGATCGTTATTGGCATCGGTA 57.263 42.857 0.00 0.00 0.00 4.02
1470 1660 4.880696 TCGGTATGATGTGCAATCATTTGA 59.119 37.500 21.44 15.97 39.30 2.69
1488 1678 4.454728 TTGAGCAAATGCCCAGTTTATC 57.545 40.909 0.94 0.00 43.38 1.75
1489 1679 2.760092 TGAGCAAATGCCCAGTTTATCC 59.240 45.455 0.94 0.00 43.38 2.59
1490 1680 2.760092 GAGCAAATGCCCAGTTTATCCA 59.240 45.455 0.94 0.00 43.38 3.41
1492 1682 3.196254 AGCAAATGCCCAGTTTATCCAAG 59.804 43.478 0.94 0.00 43.38 3.61
1494 1684 4.497300 CAAATGCCCAGTTTATCCAAGTG 58.503 43.478 0.00 0.00 35.76 3.16
1495 1685 1.544724 TGCCCAGTTTATCCAAGTGC 58.455 50.000 0.00 0.00 34.76 4.40
1496 1686 1.075374 TGCCCAGTTTATCCAAGTGCT 59.925 47.619 0.00 0.00 34.76 4.40
1500 1690 1.398390 CAGTTTATCCAAGTGCTCGGC 59.602 52.381 0.00 0.00 0.00 5.54
1501 1691 1.279271 AGTTTATCCAAGTGCTCGGCT 59.721 47.619 0.00 0.00 0.00 5.52
1502 1692 1.398390 GTTTATCCAAGTGCTCGGCTG 59.602 52.381 0.00 0.00 0.00 4.85
1503 1693 0.744414 TTATCCAAGTGCTCGGCTGC 60.744 55.000 0.00 0.00 0.00 5.25
1504 1694 2.593468 TATCCAAGTGCTCGGCTGCC 62.593 60.000 9.11 9.11 0.00 4.85
1506 1696 2.749044 CAAGTGCTCGGCTGCCAT 60.749 61.111 20.29 0.00 0.00 4.40
1507 1697 2.437359 AAGTGCTCGGCTGCCATC 60.437 61.111 20.29 7.17 0.00 3.51
1508 1698 3.984193 AAGTGCTCGGCTGCCATCC 62.984 63.158 20.29 6.00 0.00 3.51
1532 1722 1.404851 GCTAGCTCCGGCAGATTATCC 60.405 57.143 7.70 0.00 41.70 2.59
1538 1728 3.545703 CTCCGGCAGATTATCCAAAACT 58.454 45.455 0.00 0.00 0.00 2.66
1547 1737 2.570415 TATCCAAAACTCGCCCAACA 57.430 45.000 0.00 0.00 0.00 3.33
1557 1747 0.322456 TCGCCCAACAGAAAGGATGG 60.322 55.000 0.00 0.00 0.00 3.51
1558 1748 0.322456 CGCCCAACAGAAAGGATGGA 60.322 55.000 0.00 0.00 34.82 3.41
1559 1749 1.683011 CGCCCAACAGAAAGGATGGAT 60.683 52.381 0.00 0.00 34.82 3.41
1560 1750 1.753073 GCCCAACAGAAAGGATGGATG 59.247 52.381 0.00 0.00 34.82 3.51
1561 1751 2.621407 GCCCAACAGAAAGGATGGATGA 60.621 50.000 0.00 0.00 34.82 2.92
1562 1752 3.700538 CCCAACAGAAAGGATGGATGAA 58.299 45.455 0.00 0.00 34.82 2.57
1563 1753 3.698040 CCCAACAGAAAGGATGGATGAAG 59.302 47.826 0.00 0.00 34.82 3.02
1567 1757 4.268359 ACAGAAAGGATGGATGAAGCTTC 58.732 43.478 19.89 19.89 0.00 3.86
1639 1829 1.070758 TCACAGCTGTTTCCTGACCTC 59.929 52.381 18.94 0.00 34.47 3.85
1645 1835 2.354203 GCTGTTTCCTGACCTCCAGTAG 60.354 54.545 0.00 0.00 41.33 2.57
1751 1943 9.018582 TGAATAGATGATCTAGTACAGTGATGG 57.981 37.037 8.30 0.00 31.67 3.51
1755 1947 5.939764 TGATCTAGTACAGTGATGGCTTT 57.060 39.130 0.00 0.00 0.00 3.51
1757 1949 6.806751 TGATCTAGTACAGTGATGGCTTTAC 58.193 40.000 0.00 0.00 0.00 2.01
1758 1950 6.607600 TGATCTAGTACAGTGATGGCTTTACT 59.392 38.462 0.00 0.00 36.38 2.24
1759 1951 6.208988 TCTAGTACAGTGATGGCTTTACTG 57.791 41.667 19.49 19.49 45.48 2.74
1767 1959 6.219473 CAGTGATGGCTTTACTGTAGATAGG 58.781 44.000 14.72 0.00 37.59 2.57
1768 1960 5.900123 AGTGATGGCTTTACTGTAGATAGGT 59.100 40.000 0.00 0.00 0.00 3.08
1769 1961 5.986135 GTGATGGCTTTACTGTAGATAGGTG 59.014 44.000 0.00 0.00 0.00 4.00
1770 1962 5.897250 TGATGGCTTTACTGTAGATAGGTGA 59.103 40.000 0.00 0.00 0.00 4.02
1771 1963 6.554982 TGATGGCTTTACTGTAGATAGGTGAT 59.445 38.462 0.00 0.00 0.00 3.06
1773 1965 7.195374 TGGCTTTACTGTAGATAGGTGATTT 57.805 36.000 0.00 0.00 0.00 2.17
1774 1966 8.313944 TGGCTTTACTGTAGATAGGTGATTTA 57.686 34.615 0.00 0.00 0.00 1.40
1775 1967 8.202137 TGGCTTTACTGTAGATAGGTGATTTAC 58.798 37.037 0.00 0.00 0.00 2.01
1789 1981 6.216801 GGTGATTTACCCCTTCCAAAATAC 57.783 41.667 0.00 0.00 44.15 1.89
1790 1982 5.717654 GGTGATTTACCCCTTCCAAAATACA 59.282 40.000 0.00 0.00 44.15 2.29
1791 1983 6.127451 GGTGATTTACCCCTTCCAAAATACAG 60.127 42.308 0.00 0.00 44.15 2.74
1792 1984 6.436218 GTGATTTACCCCTTCCAAAATACAGT 59.564 38.462 0.00 0.00 0.00 3.55
1793 1985 7.612633 GTGATTTACCCCTTCCAAAATACAGTA 59.387 37.037 0.00 0.00 0.00 2.74
1794 1986 7.612633 TGATTTACCCCTTCCAAAATACAGTAC 59.387 37.037 0.00 0.00 0.00 2.73
1795 1987 6.707273 TTACCCCTTCCAAAATACAGTACT 57.293 37.500 0.00 0.00 0.00 2.73
1796 1988 5.594199 ACCCCTTCCAAAATACAGTACTT 57.406 39.130 0.00 0.00 0.00 2.24
1797 1989 5.567430 ACCCCTTCCAAAATACAGTACTTC 58.433 41.667 0.00 0.00 0.00 3.01
1798 1990 4.948004 CCCCTTCCAAAATACAGTACTTCC 59.052 45.833 0.00 0.00 0.00 3.46
1800 1992 5.880887 CCCTTCCAAAATACAGTACTTCCTC 59.119 44.000 0.00 0.00 0.00 3.71
1801 1993 5.880887 CCTTCCAAAATACAGTACTTCCTCC 59.119 44.000 0.00 0.00 0.00 4.30
1802 1994 5.080969 TCCAAAATACAGTACTTCCTCCG 57.919 43.478 0.00 0.00 0.00 4.63
1803 1995 4.529377 TCCAAAATACAGTACTTCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
1804 1996 5.012354 TCCAAAATACAGTACTTCCTCCGTT 59.988 40.000 0.00 0.00 0.00 4.44
1808 2000 3.446442 ACAGTACTTCCTCCGTTCCTA 57.554 47.619 0.00 0.00 0.00 2.94
1809 2001 3.771216 ACAGTACTTCCTCCGTTCCTAA 58.229 45.455 0.00 0.00 0.00 2.69
1810 2002 4.154942 ACAGTACTTCCTCCGTTCCTAAA 58.845 43.478 0.00 0.00 0.00 1.85
1811 2003 4.776308 ACAGTACTTCCTCCGTTCCTAAAT 59.224 41.667 0.00 0.00 0.00 1.40
1814 2006 7.781693 ACAGTACTTCCTCCGTTCCTAAATATA 59.218 37.037 0.00 0.00 0.00 0.86
1815 2007 8.636213 CAGTACTTCCTCCGTTCCTAAATATAA 58.364 37.037 0.00 0.00 0.00 0.98
1816 2008 8.858094 AGTACTTCCTCCGTTCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1818 2010 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1819 2011 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1820 2012 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
1822 2014 8.419442 TCCTCCGTTCCTAAATATAAGTCTTTC 58.581 37.037 0.00 0.00 0.00 2.62
1823 2015 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
1854 2046 8.528917 TTTCAATATGTACTACATACGGATGC 57.471 34.615 7.78 0.00 43.13 3.91
1855 2047 7.222000 TCAATATGTACTACATACGGATGCA 57.778 36.000 7.78 0.00 43.13 3.96
1856 2048 7.836842 TCAATATGTACTACATACGGATGCAT 58.163 34.615 7.78 0.00 43.13 3.96
1857 2049 8.962679 TCAATATGTACTACATACGGATGCATA 58.037 33.333 7.78 7.40 43.13 3.14
1858 2050 9.750125 CAATATGTACTACATACGGATGCATAT 57.250 33.333 7.78 9.40 43.13 1.78
1861 2053 8.747538 ATGTACTACATACGGATGCATATAGA 57.252 34.615 7.78 0.00 36.99 1.98
1862 2054 7.982224 TGTACTACATACGGATGCATATAGAC 58.018 38.462 7.78 3.74 36.43 2.59
1863 2055 6.120378 ACTACATACGGATGCATATAGACG 57.880 41.667 7.78 2.38 36.43 4.18
1866 2058 4.096532 ACATACGGATGCATATAGACGGAG 59.903 45.833 7.78 0.00 36.43 4.63
1867 2059 6.324194 ACATACGGATGCATATAGACGGAGT 61.324 44.000 7.78 0.00 39.62 3.85
1869 2061 9.137100 ACATACGGATGCATATAGACGGAGTTT 62.137 40.741 7.78 0.00 37.48 2.66
1886 2078 7.612677 ACGGAGTTTAGAGTGTAGATTCATTT 58.387 34.615 0.00 0.00 37.78 2.32
1887 2079 8.746530 ACGGAGTTTAGAGTGTAGATTCATTTA 58.253 33.333 0.00 0.00 37.78 1.40
1888 2080 9.751542 CGGAGTTTAGAGTGTAGATTCATTTAT 57.248 33.333 0.00 0.00 0.00 1.40
1898 2090 7.336931 AGTGTAGATTCATTTATTTTGCTCCGT 59.663 33.333 0.00 0.00 0.00 4.69
1899 2091 8.609176 GTGTAGATTCATTTATTTTGCTCCGTA 58.391 33.333 0.00 0.00 0.00 4.02
1900 2092 9.337396 TGTAGATTCATTTATTTTGCTCCGTAT 57.663 29.630 0.00 0.00 0.00 3.06
1908 2100 9.214957 CATTTATTTTGCTCCGTATATAGTCCA 57.785 33.333 0.00 0.00 0.00 4.02
1909 2101 9.959721 ATTTATTTTGCTCCGTATATAGTCCAT 57.040 29.630 0.00 0.00 0.00 3.41
1913 2105 8.771920 TTTTGCTCCGTATATAGTCCATATTG 57.228 34.615 0.00 0.00 31.96 1.90
1914 2106 6.465439 TGCTCCGTATATAGTCCATATTGG 57.535 41.667 0.00 0.00 39.43 3.16
1915 2107 6.192044 TGCTCCGTATATAGTCCATATTGGA 58.808 40.000 0.00 0.00 45.98 3.53
1930 2122 8.789767 TCCATATTGGAATCTCTAGAAAGACT 57.210 34.615 0.00 0.00 45.00 3.24
1931 2123 9.218525 TCCATATTGGAATCTCTAGAAAGACTT 57.781 33.333 0.00 0.00 45.00 3.01
1948 2140 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
1949 2141 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1950 2142 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1951 2143 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1952 2144 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1971 2290 4.624452 GGAGTACGTTTTAGACATGGACAC 59.376 45.833 0.00 0.00 0.00 3.67
1985 2304 0.394565 GGACACTGTCTCAAGGCACT 59.605 55.000 9.08 0.00 33.90 4.40
2000 2319 4.660789 AGGCACTACGTTTACCGATATT 57.339 40.909 0.00 0.00 40.70 1.28
2001 2320 5.014808 AGGCACTACGTTTACCGATATTT 57.985 39.130 0.00 0.00 40.70 1.40
2016 2335 9.891828 TTACCGATATTTTTCATATGAACATGC 57.108 29.630 17.76 8.77 33.13 4.06
2156 2486 5.112686 GCTCTCTAGGGTGTTGTCTATTTG 58.887 45.833 0.00 0.00 0.00 2.32
2157 2487 5.105310 GCTCTCTAGGGTGTTGTCTATTTGA 60.105 44.000 0.00 0.00 0.00 2.69
2198 2529 4.301072 ACATGCTTAGCCTAAAAGTCCA 57.699 40.909 0.29 0.00 0.00 4.02
2211 2542 6.001460 CCTAAAAGTCCATTCAACTGTGGTA 58.999 40.000 0.00 0.00 36.84 3.25
2391 2735 8.276252 ACAAGAGCTAAGTGTTCAGTTTAAAA 57.724 30.769 0.00 0.00 0.00 1.52
2395 2739 8.560374 AGAGCTAAGTGTTCAGTTTAAAATGTC 58.440 33.333 14.70 10.08 0.00 3.06
2406 2750 8.740123 TCAGTTTAAAATGTCCAACTCTTGTA 57.260 30.769 14.70 0.00 0.00 2.41
2407 2751 9.179909 TCAGTTTAAAATGTCCAACTCTTGTAA 57.820 29.630 14.70 0.00 0.00 2.41
2436 2782 4.506758 AGCTGCAAATGTTCAAAGTTGTT 58.493 34.783 1.02 0.00 0.00 2.83
2440 2786 6.347270 TGCAAATGTTCAAAGTTGTTGATG 57.653 33.333 0.00 0.00 0.00 3.07
2441 2787 6.104665 TGCAAATGTTCAAAGTTGTTGATGA 58.895 32.000 0.00 0.00 0.00 2.92
2451 2797 6.817641 TCAAAGTTGTTGATGAAAATTGCAGT 59.182 30.769 0.00 0.00 0.00 4.40
2473 2819 7.682741 GCAGTTTCACATGGTATGCTATTCATT 60.683 37.037 0.00 0.00 36.63 2.57
2484 2830 8.390143 TGGTATGCTATTCATTATTACACCCAT 58.610 33.333 0.00 0.00 36.63 4.00
2522 2868 1.314730 GAAAACTTCGGGGTGCTTCA 58.685 50.000 0.00 0.00 0.00 3.02
2535 2881 2.865551 GGTGCTTCAAACAACATGTTGG 59.134 45.455 35.20 21.37 40.14 3.77
2565 2911 3.246936 CAGTCATGCTCATGTAATCCGTG 59.753 47.826 9.41 0.00 39.72 4.94
2566 2912 3.132824 AGTCATGCTCATGTAATCCGTGA 59.867 43.478 9.41 0.00 39.72 4.35
2588 2942 8.600625 CGTGATAGCTAATAAAACACTAGCAAA 58.399 33.333 0.00 0.00 40.44 3.68
2676 3030 5.106673 GGTCAAACAAGTAGAATGGTGCTAC 60.107 44.000 0.00 0.00 38.76 3.58
2686 3040 2.220653 ATGGTGCTACAAATGCTGGT 57.779 45.000 0.00 0.00 0.00 4.00
2710 3064 3.055719 CAACGCCGGTGCCTGATT 61.056 61.111 16.69 0.00 0.00 2.57
2749 3105 2.832129 ACTCGTCTGCCCATTCTTCTTA 59.168 45.455 0.00 0.00 0.00 2.10
2750 3106 3.118956 ACTCGTCTGCCCATTCTTCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
2784 3140 9.575868 TGGAAGTTTTATACAAATGGAAGTACA 57.424 29.630 0.00 0.00 0.00 2.90
2815 3171 4.221482 GGCTCCACTCATGAAATTTCCTTT 59.779 41.667 15.48 0.00 0.00 3.11
2831 3187 3.448934 TCCTTTGGCTCAGATCTCTTCT 58.551 45.455 0.00 0.00 33.90 2.85
2905 3262 1.834188 CCACTATTCAAACGCCCCTT 58.166 50.000 0.00 0.00 0.00 3.95
2920 3277 4.827284 ACGCCCCTTAAATGATTATTCCAG 59.173 41.667 0.00 0.00 0.00 3.86
2927 3284 9.617523 CCCTTAAATGATTATTCCAGCATTTTT 57.382 29.630 0.00 0.00 40.34 1.94
2968 3325 1.888215 ACAGCTGATGTGGTCAACAG 58.112 50.000 23.35 0.00 43.64 3.16
2974 3331 4.586001 AGCTGATGTGGTCAACAGAATTTT 59.414 37.500 9.10 0.00 43.91 1.82
2975 3332 4.919754 GCTGATGTGGTCAACAGAATTTTC 59.080 41.667 9.10 0.00 43.91 2.29
2977 3334 5.830912 TGATGTGGTCAACAGAATTTTCAC 58.169 37.500 0.00 0.00 43.64 3.18
2978 3335 5.593909 TGATGTGGTCAACAGAATTTTCACT 59.406 36.000 0.00 0.00 43.64 3.41
2979 3336 5.913137 TGTGGTCAACAGAATTTTCACTT 57.087 34.783 0.00 0.00 33.78 3.16
2980 3337 6.279513 TGTGGTCAACAGAATTTTCACTTT 57.720 33.333 0.00 0.00 33.78 2.66
2989 3346 6.199393 ACAGAATTTTCACTTTAAGACGTGC 58.801 36.000 0.00 0.00 0.00 5.34
3032 3389 8.529424 AATCATATCCAGAGATTTCAAAGCAA 57.471 30.769 0.00 0.00 33.67 3.91
3069 3426 4.320608 TTGGCTGGTCAATGAAGAAAAC 57.679 40.909 0.00 0.00 0.00 2.43
3078 3435 3.318839 TCAATGAAGAAAACTGGCTGGTG 59.681 43.478 0.00 0.00 0.00 4.17
3079 3436 1.032014 TGAAGAAAACTGGCTGGTGC 58.968 50.000 0.00 0.00 38.76 5.01
3151 3510 2.361119 AGTGCGCAATCGATAGTTAGGA 59.639 45.455 14.00 0.00 38.10 2.94
3218 3578 2.351726 GGGCGTGTGACATTGTTATCTC 59.648 50.000 0.00 0.00 0.00 2.75
3318 3678 2.158957 TCGTTGCTATCTCCCAATCACC 60.159 50.000 0.00 0.00 0.00 4.02
3329 3689 3.575687 CTCCCAATCACCTTTTCTTGCTT 59.424 43.478 0.00 0.00 0.00 3.91
3330 3690 3.966665 TCCCAATCACCTTTTCTTGCTTT 59.033 39.130 0.00 0.00 0.00 3.51
3332 3692 5.243730 TCCCAATCACCTTTTCTTGCTTTAG 59.756 40.000 0.00 0.00 0.00 1.85
3333 3693 5.243730 CCCAATCACCTTTTCTTGCTTTAGA 59.756 40.000 0.00 0.00 0.00 2.10
3336 3696 4.142038 TCACCTTTTCTTGCTTTAGACCC 58.858 43.478 0.00 0.00 0.00 4.46
3384 3744 1.353694 ACCTTCATCCTCTTGCAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
3406 3766 1.064758 CCTATACAAGCTTGCCCACCA 60.065 52.381 26.27 5.25 0.00 4.17
3415 3775 0.527565 CTTGCCCACCACAAGCATAC 59.472 55.000 0.00 0.00 38.23 2.39
3420 3780 0.608856 CCACCACAAGCATACCAGCA 60.609 55.000 0.00 0.00 36.85 4.41
3430 3790 0.605319 CATACCAGCAACACCACGGT 60.605 55.000 0.00 0.00 0.00 4.83
3559 3919 5.365021 TCCAAAGATCTTGATCCTCCTTC 57.635 43.478 9.17 0.00 0.00 3.46
3592 3952 8.768501 ACCTTTAACTTTTTCTTCTTCCAGAT 57.231 30.769 0.00 0.00 0.00 2.90
3694 4054 8.547173 ACATTTCTCCAGATGATAACTTCTCTT 58.453 33.333 0.00 0.00 0.00 2.85
3739 4099 5.258685 TGCGTTCACGACTTTTATTAGTG 57.741 39.130 2.87 0.00 43.02 2.74
3751 4111 7.169308 CGACTTTTATTAGTGGCTCGTATGATT 59.831 37.037 0.00 0.00 0.00 2.57
3792 4152 2.684843 CGGCTTCTTCTGTGCAGGC 61.685 63.158 0.00 0.00 0.00 4.85
3843 4203 6.603201 TCTTTTCCATCTTCTTTGTCAGTGTT 59.397 34.615 0.00 0.00 0.00 3.32
3965 4325 1.147817 ACTTGGGGATTTGGTGCTCTT 59.852 47.619 0.00 0.00 0.00 2.85
4047 4407 1.826385 ATCTTACCAGCACAGGCAAC 58.174 50.000 0.00 0.00 44.61 4.17
4202 4562 6.095377 CCAGTGGAAAATTTTATCTCACTGC 58.905 40.000 28.16 9.69 45.15 4.40
4340 4700 0.109342 AGCCTGGAGGTGTTCACTTG 59.891 55.000 0.00 0.00 37.57 3.16
4390 4750 2.693896 GATCCAGCTGCCCAGGGATG 62.694 65.000 10.89 1.01 40.15 3.51
4746 5106 3.482722 AGTGAAGAGCGATGCAAATTG 57.517 42.857 0.00 0.00 0.00 2.32
4772 5132 5.281693 TGCTTGAATGATTGTTCGTGTAG 57.718 39.130 0.00 0.00 0.00 2.74
4793 5153 2.165998 GGCTTCATTCTTCCAGCAGTT 58.834 47.619 0.00 0.00 33.64 3.16
4846 5206 7.328737 TGCATCTGACATATTCTCCATGATAG 58.671 38.462 0.00 0.00 0.00 2.08
4847 5207 7.179694 TGCATCTGACATATTCTCCATGATAGA 59.820 37.037 0.00 0.00 0.00 1.98
4850 5210 7.554211 TCTGACATATTCTCCATGATAGATGC 58.446 38.462 0.00 0.00 0.00 3.91
4861 5221 4.219944 CCATGATAGATGCAAATTCCCCAG 59.780 45.833 0.00 0.00 0.00 4.45
5030 5390 4.941873 AGTTTTACGAAGAAATAGGGCAGG 59.058 41.667 0.00 0.00 0.00 4.85
5031 5391 3.553828 TTACGAAGAAATAGGGCAGGG 57.446 47.619 0.00 0.00 0.00 4.45
5106 5466 8.507249 AGATTTTCTTTTATGGAGTTGAAGTCG 58.493 33.333 0.00 0.00 0.00 4.18
5180 5540 8.352201 TGTTTTTGAAGGACAGATTTGTGATAG 58.648 33.333 0.00 0.00 37.76 2.08
5229 5589 4.100035 GGCATTAATCAAGGGAAAAGGGAG 59.900 45.833 0.00 0.00 0.00 4.30
5340 5700 5.333645 GCTTCTTGTCTATGAATACATGCCG 60.334 44.000 0.00 0.00 37.87 5.69
5541 5901 3.327757 TCACTGCCAAGGTATCTGACTTT 59.672 43.478 0.00 0.00 0.00 2.66
5601 5961 3.067320 TCATGACTAGATTGAGAGGCACG 59.933 47.826 0.00 0.00 32.16 5.34
5626 5986 0.324943 TTACTTGGCTCCTGAGTGGC 59.675 55.000 0.00 0.00 35.26 5.01
5676 6036 4.963276 TGTGTATAGCTTTGGCATTGTC 57.037 40.909 0.00 0.00 41.70 3.18
5734 6094 0.324285 CTCACAGCCTGAGGAAAGCT 59.676 55.000 0.65 0.00 42.69 3.74
5743 6103 2.538437 CTGAGGAAAGCTGTCATCTCG 58.462 52.381 18.82 7.01 0.00 4.04
5806 6166 1.797933 CTTATCGATCCGCGCTCCG 60.798 63.158 5.56 2.90 40.61 4.63
5883 6245 0.108186 CTGCAGGTTGATAGCCGTCA 60.108 55.000 5.57 0.00 0.00 4.35
5899 6261 1.523758 GTCAACGGCCTTCAATGACT 58.476 50.000 0.00 0.00 37.87 3.41
5911 6273 2.416747 TCAATGACTGAAGCCGTCAAG 58.583 47.619 0.00 0.00 43.80 3.02
5924 6286 2.039418 CCGTCAAGATCCTGGATGGTA 58.961 52.381 15.25 0.00 36.19 3.25
5959 6321 3.223674 ACCGAACTTGATTTGGACCTT 57.776 42.857 0.00 0.00 44.08 3.50
5965 6327 5.912955 CGAACTTGATTTGGACCTTGTAAAC 59.087 40.000 0.00 0.00 0.00 2.01
5966 6328 6.459024 CGAACTTGATTTGGACCTTGTAAACA 60.459 38.462 0.00 0.00 0.00 2.83
5968 6330 8.472007 AACTTGATTTGGACCTTGTAAACATA 57.528 30.769 0.00 0.00 0.00 2.29
5971 6333 7.681939 TGATTTGGACCTTGTAAACATAGAC 57.318 36.000 0.00 0.00 0.00 2.59
5974 6336 5.160607 TGGACCTTGTAAACATAGACCTG 57.839 43.478 0.00 0.00 0.00 4.00
5992 6354 2.646930 CTGATGGTGGCAAATAGAGCA 58.353 47.619 0.00 0.00 0.00 4.26
5998 6360 1.086696 TGGCAAATAGAGCAGTTCGC 58.913 50.000 0.00 0.00 42.91 4.70
6079 6441 3.771216 AGCTCAAGGTTTGGAACATGAT 58.229 40.909 0.00 0.00 39.30 2.45
6082 6444 5.070847 AGCTCAAGGTTTGGAACATGATTTT 59.929 36.000 0.00 0.00 39.30 1.82
6087 6449 8.087750 TCAAGGTTTGGAACATGATTTTACATC 58.912 33.333 0.00 0.00 39.30 3.06
6109 6471 2.022195 GTCCTGTGCAGCATCATGATT 58.978 47.619 5.16 0.00 0.00 2.57
6110 6472 2.426024 GTCCTGTGCAGCATCATGATTT 59.574 45.455 5.16 0.00 0.00 2.17
6141 6503 8.247562 AGATCCTAAAGTTGTGATATAGATCGC 58.752 37.037 3.92 3.92 42.06 4.58
6163 6525 5.298347 GCCTCCTGGTATCAATAGTTACAC 58.702 45.833 0.00 0.00 35.27 2.90
6165 6527 6.516718 CCTCCTGGTATCAATAGTTACACAG 58.483 44.000 0.00 0.00 0.00 3.66
6192 6554 3.742385 TGGGTAAAAACTGTACTTCCCG 58.258 45.455 0.00 0.00 36.75 5.14
6244 6606 6.714810 ACACTGTAATTGCCTGAAGTTTGATA 59.285 34.615 0.00 0.00 0.00 2.15
6264 6627 2.696989 TGTATGCATCTGTGGTGAGG 57.303 50.000 0.19 0.00 0.00 3.86
6279 6642 5.105187 TGTGGTGAGGTTCTAATCATCTCAG 60.105 44.000 0.00 0.00 35.48 3.35
6285 6648 4.961730 AGGTTCTAATCATCTCAGTGAGCT 59.038 41.667 15.72 2.43 0.00 4.09
6286 6649 5.068987 AGGTTCTAATCATCTCAGTGAGCTC 59.931 44.000 15.72 6.82 0.00 4.09
6289 6652 1.774110 ATCATCTCAGTGAGCTCGGT 58.226 50.000 15.72 0.00 0.00 4.69
6293 6959 2.154854 TCTCAGTGAGCTCGGTTTTG 57.845 50.000 15.72 3.04 0.00 2.44
6335 7005 2.734606 TCGTCTACAAATGTTTCGGCAG 59.265 45.455 0.00 0.00 0.00 4.85
6336 7006 2.724839 CGTCTACAAATGTTTCGGCAGC 60.725 50.000 0.00 0.00 0.00 5.25
6342 7012 3.243839 ACAAATGTTTCGGCAGCATTCTT 60.244 39.130 0.00 0.00 32.38 2.52
6348 7018 2.309528 TCGGCAGCATTCTTCGTTAT 57.690 45.000 0.00 0.00 0.00 1.89
6350 7020 3.990092 TCGGCAGCATTCTTCGTTATAT 58.010 40.909 0.00 0.00 0.00 0.86
6352 7022 5.534407 TCGGCAGCATTCTTCGTTATATTA 58.466 37.500 0.00 0.00 0.00 0.98
6358 7028 7.532209 GCAGCATTCTTCGTTATATTAGCTTTC 59.468 37.037 0.00 0.00 0.00 2.62
6359 7029 8.768955 CAGCATTCTTCGTTATATTAGCTTTCT 58.231 33.333 0.00 0.00 0.00 2.52
6361 7031 7.947299 GCATTCTTCGTTATATTAGCTTTCTCG 59.053 37.037 0.00 0.00 0.00 4.04
6362 7032 9.181805 CATTCTTCGTTATATTAGCTTTCTCGA 57.818 33.333 0.00 0.00 0.00 4.04
6363 7033 8.783999 TTCTTCGTTATATTAGCTTTCTCGAG 57.216 34.615 5.93 5.93 0.00 4.04
6364 7034 7.361127 TCTTCGTTATATTAGCTTTCTCGAGG 58.639 38.462 13.56 0.00 0.00 4.63
6366 7036 7.450124 TCGTTATATTAGCTTTCTCGAGGAT 57.550 36.000 13.56 0.00 0.00 3.24
6368 7038 8.021973 TCGTTATATTAGCTTTCTCGAGGATTC 58.978 37.037 13.56 0.00 0.00 2.52
6373 7043 4.278975 AGCTTTCTCGAGGATTCTTTGT 57.721 40.909 13.56 0.00 0.00 2.83
6374 7044 4.646572 AGCTTTCTCGAGGATTCTTTGTT 58.353 39.130 13.56 0.00 0.00 2.83
6375 7045 5.794894 AGCTTTCTCGAGGATTCTTTGTTA 58.205 37.500 13.56 0.00 0.00 2.41
6376 7046 5.872070 AGCTTTCTCGAGGATTCTTTGTTAG 59.128 40.000 13.56 0.00 0.00 2.34
6377 7047 5.446607 GCTTTCTCGAGGATTCTTTGTTAGC 60.447 44.000 13.56 2.31 0.00 3.09
6378 7048 5.407407 TTCTCGAGGATTCTTTGTTAGCT 57.593 39.130 13.56 0.00 0.00 3.32
6379 7049 5.407407 TCTCGAGGATTCTTTGTTAGCTT 57.593 39.130 13.56 0.00 0.00 3.74
6380 7050 5.794894 TCTCGAGGATTCTTTGTTAGCTTT 58.205 37.500 13.56 0.00 0.00 3.51
6381 7051 6.231211 TCTCGAGGATTCTTTGTTAGCTTTT 58.769 36.000 13.56 0.00 0.00 2.27
6382 7052 6.710744 TCTCGAGGATTCTTTGTTAGCTTTTT 59.289 34.615 13.56 0.00 0.00 1.94
6422 7092 5.791336 GGAAACACCTTCTTTTCCTGAAT 57.209 39.130 5.95 0.00 45.09 2.57
6423 7093 6.161855 GGAAACACCTTCTTTTCCTGAATT 57.838 37.500 5.95 0.00 45.09 2.17
6457 8688 1.884075 CGTGGGATTGACGAGGTGGA 61.884 60.000 0.00 0.00 39.21 4.02
6458 8689 0.541863 GTGGGATTGACGAGGTGGAT 59.458 55.000 0.00 0.00 0.00 3.41
6486 8717 1.581447 GCCAAGCCCGACTTTCAAG 59.419 57.895 0.00 0.00 36.04 3.02
6488 8719 1.160137 CCAAGCCCGACTTTCAAGAG 58.840 55.000 0.00 0.00 36.04 2.85
6501 8732 0.850100 TCAAGAGGTTTCCAGCCCAA 59.150 50.000 0.00 0.00 0.00 4.12
6504 8735 0.540597 AGAGGTTTCCAGCCCAAAGC 60.541 55.000 0.00 0.00 44.25 3.51
6516 8761 2.680577 GCCCAAAGCAATCAAAGACAG 58.319 47.619 0.00 0.00 42.97 3.51
6517 8762 2.036346 GCCCAAAGCAATCAAAGACAGT 59.964 45.455 0.00 0.00 42.97 3.55
6519 8764 3.054878 CCAAAGCAATCAAAGACAGTGC 58.945 45.455 0.00 0.00 35.41 4.40
6530 8775 1.040339 AGACAGTGCGGAGAGGATCC 61.040 60.000 2.48 2.48 45.64 3.36
6535 8780 2.123251 GCGGAGAGGATCCCTGGA 60.123 66.667 8.55 0.00 46.50 3.86
6537 8791 1.753368 GCGGAGAGGATCCCTGGAAG 61.753 65.000 8.55 0.00 46.50 3.46
6542 8796 2.899256 GAGAGGATCCCTGGAAGATCAG 59.101 54.545 8.55 0.00 41.64 2.90
6545 8799 0.602372 GATCCCTGGAAGATCAGCGC 60.602 60.000 0.00 0.00 39.97 5.92
6549 8803 1.227497 CTGGAAGATCAGCGCCTCC 60.227 63.158 2.29 1.29 34.07 4.30
6573 8827 4.497300 CATGAAATTCCGTCCAAAGCAAT 58.503 39.130 0.00 0.00 0.00 3.56
6574 8828 4.173036 TGAAATTCCGTCCAAAGCAATC 57.827 40.909 0.00 0.00 0.00 2.67
6576 8830 4.038522 TGAAATTCCGTCCAAAGCAATCAA 59.961 37.500 0.00 0.00 0.00 2.57
6581 8835 2.293122 CCGTCCAAAGCAATCAAAGACA 59.707 45.455 0.00 0.00 0.00 3.41
6582 8836 3.558505 CGTCCAAAGCAATCAAAGACAG 58.441 45.455 0.00 0.00 0.00 3.51
6604 8873 1.067974 GCTGTAAAAGGCAAACCCGTT 59.932 47.619 0.00 0.00 39.21 4.44
6616 8889 3.124921 CCCGTTGCGCCTAACAGG 61.125 66.667 4.18 9.40 38.80 4.00
6668 8949 3.660111 GTGCGCGGTCCAAGCTTT 61.660 61.111 8.83 0.00 0.00 3.51
6669 8950 3.659092 TGCGCGGTCCAAGCTTTG 61.659 61.111 8.83 0.00 0.00 2.77
6671 8952 3.659092 CGCGGTCCAAGCTTTGCA 61.659 61.111 0.00 0.00 0.00 4.08
6672 8953 2.964978 GCGGTCCAAGCTTTGCAT 59.035 55.556 0.00 0.00 0.00 3.96
6673 8954 1.290009 GCGGTCCAAGCTTTGCATT 59.710 52.632 0.00 0.00 0.00 3.56
6674 8955 0.319813 GCGGTCCAAGCTTTGCATTT 60.320 50.000 0.00 0.00 0.00 2.32
6675 8956 1.873486 GCGGTCCAAGCTTTGCATTTT 60.873 47.619 0.00 0.00 0.00 1.82
6676 8957 2.482864 CGGTCCAAGCTTTGCATTTTT 58.517 42.857 0.00 0.00 0.00 1.94
6701 8982 0.940519 TACGGGCGTGAAAAGACGTG 60.941 55.000 0.00 0.00 41.54 4.49
6723 9010 1.302383 CCAACATGCGGGCGAGTAAA 61.302 55.000 0.00 0.00 0.00 2.01
6727 9014 0.179200 CATGCGGGCGAGTAAAACAC 60.179 55.000 0.00 0.00 0.00 3.32
6741 9028 3.876589 AACACAGCACCGGCGGTAG 62.877 63.158 33.65 25.31 46.95 3.18
6847 9137 0.749454 CTTCCCAAATCCCGAGGCAG 60.749 60.000 0.00 0.00 0.00 4.85
6848 9138 2.830370 CCCAAATCCCGAGGCAGC 60.830 66.667 0.00 0.00 0.00 5.25
6849 9139 2.045045 CCAAATCCCGAGGCAGCA 60.045 61.111 0.00 0.00 0.00 4.41
6850 9140 2.117156 CCAAATCCCGAGGCAGCAG 61.117 63.158 0.00 0.00 0.00 4.24
6851 9141 2.439156 AAATCCCGAGGCAGCAGC 60.439 61.111 0.00 0.00 41.10 5.25
6867 9157 3.161817 GCAGCAGCGGCAAATTTG 58.838 55.556 13.20 14.03 44.61 2.32
6868 9158 1.373246 GCAGCAGCGGCAAATTTGA 60.373 52.632 22.31 0.00 44.61 2.69
6869 9159 0.738412 GCAGCAGCGGCAAATTTGAT 60.738 50.000 22.31 1.30 44.61 2.57
6870 9160 1.469595 GCAGCAGCGGCAAATTTGATA 60.470 47.619 22.31 0.00 44.61 2.15
6871 9161 2.878580 CAGCAGCGGCAAATTTGATAA 58.121 42.857 22.31 0.00 44.61 1.75
6872 9162 3.450578 CAGCAGCGGCAAATTTGATAAT 58.549 40.909 22.31 1.66 44.61 1.28
6873 9163 3.866910 CAGCAGCGGCAAATTTGATAATT 59.133 39.130 22.31 0.00 44.61 1.40
6874 9164 4.330620 CAGCAGCGGCAAATTTGATAATTT 59.669 37.500 22.31 0.00 43.09 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.174166 ACTCAATGTTGTTTGGGTATTACTATC 57.826 33.333 0.00 0.00 38.53 2.08
198 206 3.380004 ACGATGTTGGATTTTGTGTGTGT 59.620 39.130 0.00 0.00 0.00 3.72
290 421 6.599244 TCATGAATACAATTGTCCTCTGGAAC 59.401 38.462 15.85 0.00 31.38 3.62
292 423 6.312141 TCATGAATACAATTGTCCTCTGGA 57.688 37.500 15.85 10.96 0.00 3.86
300 431 4.158394 GTGGGTGCTCATGAATACAATTGT 59.842 41.667 16.68 16.68 0.00 2.71
319 450 3.181450 GGAGAGATTTACCTCCATGTGGG 60.181 52.174 0.00 3.73 46.28 4.61
407 548 6.808704 GCTATTGATTTTTCCACTTTCCACTC 59.191 38.462 0.00 0.00 0.00 3.51
424 565 0.401395 TTCCCTCCCCGGCTATTGAT 60.401 55.000 0.00 0.00 0.00 2.57
433 574 1.597461 GTGTCTTCTTCCCTCCCCG 59.403 63.158 0.00 0.00 0.00 5.73
454 595 7.898014 AGAAGTCCAAAAGTTTTGGTATCTT 57.102 32.000 35.29 32.45 40.40 2.40
479 620 6.569780 TCAGTTTTATGATTAGAGCGCACTA 58.430 36.000 11.47 11.04 0.00 2.74
529 671 4.406456 TCAGCATTCCCACTACATGTTTT 58.594 39.130 2.30 0.00 0.00 2.43
564 706 2.233271 CATGCAACCTTCCAACTCAGT 58.767 47.619 0.00 0.00 0.00 3.41
589 731 9.440761 AGTTCACCCTCACTATCTTATTTATCT 57.559 33.333 0.00 0.00 0.00 1.98
593 735 9.588096 AAAAAGTTCACCCTCACTATCTTATTT 57.412 29.630 0.00 0.00 0.00 1.40
596 738 9.720769 CTTAAAAAGTTCACCCTCACTATCTTA 57.279 33.333 0.00 0.00 0.00 2.10
597 739 8.218488 ACTTAAAAAGTTCACCCTCACTATCTT 58.782 33.333 0.00 0.00 39.04 2.40
598 740 7.746703 ACTTAAAAAGTTCACCCTCACTATCT 58.253 34.615 0.00 0.00 39.04 1.98
599 741 7.981102 ACTTAAAAAGTTCACCCTCACTATC 57.019 36.000 0.00 0.00 39.04 2.08
628 770 8.918202 TTATTCTGTTTGTTCACTGTAATCCT 57.082 30.769 0.00 0.00 0.00 3.24
629 771 9.959749 TTTTATTCTGTTTGTTCACTGTAATCC 57.040 29.630 0.00 0.00 0.00 3.01
654 796 6.376299 GGTGGGACCTCTATTTTTCGTTTATT 59.624 38.462 0.00 0.00 34.73 1.40
657 799 4.077108 GGTGGGACCTCTATTTTTCGTTT 58.923 43.478 0.00 0.00 34.73 3.60
665 807 1.288335 AGTCTCGGTGGGACCTCTATT 59.712 52.381 0.00 0.00 35.66 1.73
666 808 0.927767 AGTCTCGGTGGGACCTCTAT 59.072 55.000 0.00 0.00 35.66 1.98
667 809 0.702902 AAGTCTCGGTGGGACCTCTA 59.297 55.000 0.00 0.00 35.66 2.43
782 933 9.193133 CGAAGCCAATATATTTCCGTATATAGG 57.807 37.037 0.00 0.00 29.39 2.57
855 1012 2.045926 ATGGCACCCGAGCACTTC 60.046 61.111 0.00 0.00 35.83 3.01
907 1064 2.551032 TGCCTCCGATGTATGTACGTAG 59.449 50.000 0.00 0.00 0.00 3.51
941 1103 3.188786 CGGCTAGACGCAGGCAAC 61.189 66.667 4.31 0.00 41.01 4.17
1055 1217 1.527034 TAAACAGGAAGCTGCAGCAG 58.473 50.000 38.24 23.58 45.16 4.24
1153 1325 5.632764 CGATCACAAATGGCTCTAGATACAG 59.367 44.000 0.00 0.00 0.00 2.74
1207 1391 0.604578 AACTGATTGCAATGCGGCTT 59.395 45.000 18.59 7.82 34.04 4.35
1222 1406 5.469479 ACCAACAGAACAGAACAAAAACTG 58.531 37.500 0.00 0.00 39.65 3.16
1224 1408 7.876896 TTTACCAACAGAACAGAACAAAAAC 57.123 32.000 0.00 0.00 0.00 2.43
1226 1410 9.796120 CTATTTTACCAACAGAACAGAACAAAA 57.204 29.630 0.00 0.00 0.00 2.44
1227 1411 7.918562 GCTATTTTACCAACAGAACAGAACAAA 59.081 33.333 0.00 0.00 0.00 2.83
1228 1412 7.284489 AGCTATTTTACCAACAGAACAGAACAA 59.716 33.333 0.00 0.00 0.00 2.83
1229 1413 6.770785 AGCTATTTTACCAACAGAACAGAACA 59.229 34.615 0.00 0.00 0.00 3.18
1230 1414 7.203255 AGCTATTTTACCAACAGAACAGAAC 57.797 36.000 0.00 0.00 0.00 3.01
1231 1415 7.500892 TCAAGCTATTTTACCAACAGAACAGAA 59.499 33.333 0.00 0.00 0.00 3.02
1232 1416 6.995686 TCAAGCTATTTTACCAACAGAACAGA 59.004 34.615 0.00 0.00 0.00 3.41
1233 1417 7.202016 TCAAGCTATTTTACCAACAGAACAG 57.798 36.000 0.00 0.00 0.00 3.16
1234 1418 7.759489 ATCAAGCTATTTTACCAACAGAACA 57.241 32.000 0.00 0.00 0.00 3.18
1235 1419 9.556030 GTTATCAAGCTATTTTACCAACAGAAC 57.444 33.333 0.00 0.00 0.00 3.01
1236 1420 8.447833 CGTTATCAAGCTATTTTACCAACAGAA 58.552 33.333 0.00 0.00 0.00 3.02
1237 1421 7.604927 ACGTTATCAAGCTATTTTACCAACAGA 59.395 33.333 0.00 0.00 0.00 3.41
1238 1422 7.748847 ACGTTATCAAGCTATTTTACCAACAG 58.251 34.615 0.00 0.00 0.00 3.16
1239 1423 7.675962 ACGTTATCAAGCTATTTTACCAACA 57.324 32.000 0.00 0.00 0.00 3.33
1240 1424 9.698617 CTAACGTTATCAAGCTATTTTACCAAC 57.301 33.333 8.76 0.00 0.00 3.77
1241 1425 8.885722 CCTAACGTTATCAAGCTATTTTACCAA 58.114 33.333 8.76 0.00 0.00 3.67
1242 1426 8.042515 ACCTAACGTTATCAAGCTATTTTACCA 58.957 33.333 8.76 0.00 0.00 3.25
1243 1427 8.333186 CACCTAACGTTATCAAGCTATTTTACC 58.667 37.037 8.76 0.00 0.00 2.85
1244 1428 9.090692 TCACCTAACGTTATCAAGCTATTTTAC 57.909 33.333 8.76 0.00 0.00 2.01
1245 1429 9.826574 ATCACCTAACGTTATCAAGCTATTTTA 57.173 29.630 8.76 0.00 0.00 1.52
1246 1430 8.612619 CATCACCTAACGTTATCAAGCTATTTT 58.387 33.333 8.76 0.00 0.00 1.82
1247 1431 7.985184 TCATCACCTAACGTTATCAAGCTATTT 59.015 33.333 8.76 0.00 0.00 1.40
1248 1432 7.497595 TCATCACCTAACGTTATCAAGCTATT 58.502 34.615 8.76 0.00 0.00 1.73
1257 1441 7.356089 TGGAGTATTCATCACCTAACGTTAT 57.644 36.000 8.76 0.00 0.00 1.89
1290 1475 6.432472 ACAAACAAACACCCAATTTCAAATGT 59.568 30.769 0.00 0.00 0.00 2.71
1294 1479 4.697352 CCACAAACAAACACCCAATTTCAA 59.303 37.500 0.00 0.00 0.00 2.69
1359 1548 6.951198 TGTGTAATTGTTCCATGACCCTTATT 59.049 34.615 0.00 0.00 0.00 1.40
1360 1549 6.489603 TGTGTAATTGTTCCATGACCCTTAT 58.510 36.000 0.00 0.00 0.00 1.73
1363 1552 4.380843 TGTGTAATTGTTCCATGACCCT 57.619 40.909 0.00 0.00 0.00 4.34
1365 1554 7.027161 GTGTATTGTGTAATTGTTCCATGACC 58.973 38.462 0.00 0.00 0.00 4.02
1390 1579 9.189723 GTCGTTTGCCTAATTATACTAACCTAG 57.810 37.037 0.00 0.00 0.00 3.02
1401 1590 2.361789 GGCCAGTCGTTTGCCTAATTA 58.638 47.619 0.00 0.00 42.01 1.40
1407 1597 1.173913 AAATAGGCCAGTCGTTTGCC 58.826 50.000 5.01 0.00 45.70 4.52
1436 1626 4.326413 CATCATACCGATGCCAATAACG 57.674 45.455 0.00 0.00 44.95 3.18
1450 1640 5.584442 TGCTCAAATGATTGCACATCATAC 58.416 37.500 18.51 10.49 37.75 2.39
1452 1642 4.729227 TGCTCAAATGATTGCACATCAT 57.271 36.364 14.70 14.70 40.20 2.45
1470 1660 2.818921 TGGATAAACTGGGCATTTGCT 58.181 42.857 2.12 0.00 41.70 3.91
1489 1679 2.749044 ATGGCAGCCGAGCACTTG 60.749 61.111 7.03 0.00 35.83 3.16
1490 1680 2.437359 GATGGCAGCCGAGCACTT 60.437 61.111 7.03 0.00 35.83 3.16
1503 1693 2.925262 CGGAGCTAGCCTCGGATGG 61.925 68.421 12.13 0.00 41.90 3.51
1504 1694 2.647875 CGGAGCTAGCCTCGGATG 59.352 66.667 12.13 0.00 41.90 3.51
1505 1695 2.598985 CCGGAGCTAGCCTCGGAT 60.599 66.667 30.83 6.07 41.90 4.18
1508 1698 4.277593 CTGCCGGAGCTAGCCTCG 62.278 72.222 12.13 15.23 41.71 4.63
1509 1699 1.753368 AATCTGCCGGAGCTAGCCTC 61.753 60.000 12.13 8.32 40.80 4.70
1510 1700 0.470080 TAATCTGCCGGAGCTAGCCT 60.470 55.000 12.13 0.00 40.80 4.58
1511 1701 0.610687 ATAATCTGCCGGAGCTAGCC 59.389 55.000 12.13 2.59 40.80 3.93
1512 1702 1.404851 GGATAATCTGCCGGAGCTAGC 60.405 57.143 5.05 6.62 40.80 3.42
1513 1703 1.895798 TGGATAATCTGCCGGAGCTAG 59.104 52.381 5.05 0.00 40.80 3.42
1514 1704 2.009681 TGGATAATCTGCCGGAGCTA 57.990 50.000 5.05 0.00 40.80 3.32
1515 1705 1.131638 TTGGATAATCTGCCGGAGCT 58.868 50.000 5.05 0.00 40.80 4.09
1516 1706 1.967319 TTTGGATAATCTGCCGGAGC 58.033 50.000 5.05 0.00 40.48 4.70
1517 1707 3.545703 AGTTTTGGATAATCTGCCGGAG 58.454 45.455 5.05 0.00 0.00 4.63
1518 1708 3.541632 GAGTTTTGGATAATCTGCCGGA 58.458 45.455 5.05 0.00 0.00 5.14
1532 1722 2.543653 CCTTTCTGTTGGGCGAGTTTTG 60.544 50.000 0.00 0.00 0.00 2.44
1538 1728 0.322456 CCATCCTTTCTGTTGGGCGA 60.322 55.000 0.00 0.00 0.00 5.54
1547 1737 4.581309 TGAAGCTTCATCCATCCTTTCT 57.419 40.909 25.16 0.00 31.01 2.52
1557 1747 6.179040 AGCCTTATCCATATGAAGCTTCATC 58.821 40.000 38.37 22.53 44.17 2.92
1559 1749 5.072193 TGAGCCTTATCCATATGAAGCTTCA 59.928 40.000 30.23 30.23 42.14 3.02
1560 1750 5.555017 TGAGCCTTATCCATATGAAGCTTC 58.445 41.667 19.89 19.89 0.00 3.86
1561 1751 5.514484 CCTGAGCCTTATCCATATGAAGCTT 60.514 44.000 3.65 0.00 0.00 3.74
1562 1752 4.019501 CCTGAGCCTTATCCATATGAAGCT 60.020 45.833 3.65 2.78 0.00 3.74
1563 1753 4.260170 CCTGAGCCTTATCCATATGAAGC 58.740 47.826 3.65 0.00 0.00 3.86
1567 1757 3.184628 TCCCCTGAGCCTTATCCATATG 58.815 50.000 0.00 0.00 0.00 1.78
1570 1760 2.447582 ATCCCCTGAGCCTTATCCAT 57.552 50.000 0.00 0.00 0.00 3.41
1616 1806 2.079925 GTCAGGAAACAGCTGTGATCC 58.920 52.381 30.95 30.95 35.00 3.36
1639 1829 6.741992 TTCTTTGCAACATATGTCTACTGG 57.258 37.500 9.23 0.00 0.00 4.00
1731 1923 5.720371 AGCCATCACTGTACTAGATCATC 57.280 43.478 0.00 0.00 0.00 2.92
1733 1925 5.939764 AAAGCCATCACTGTACTAGATCA 57.060 39.130 0.00 0.00 0.00 2.92
1735 1927 6.810911 CAGTAAAGCCATCACTGTACTAGAT 58.189 40.000 0.00 0.00 38.42 1.98
1743 1935 6.183360 ACCTATCTACAGTAAAGCCATCACTG 60.183 42.308 0.00 0.00 44.20 3.66
1744 1936 5.900123 ACCTATCTACAGTAAAGCCATCACT 59.100 40.000 0.00 0.00 0.00 3.41
1745 1937 5.986135 CACCTATCTACAGTAAAGCCATCAC 59.014 44.000 0.00 0.00 0.00 3.06
1747 1939 6.406692 TCACCTATCTACAGTAAAGCCATC 57.593 41.667 0.00 0.00 0.00 3.51
1748 1940 7.380423 AATCACCTATCTACAGTAAAGCCAT 57.620 36.000 0.00 0.00 0.00 4.40
1749 1941 6.808321 AATCACCTATCTACAGTAAAGCCA 57.192 37.500 0.00 0.00 0.00 4.75
1750 1942 7.656542 GGTAAATCACCTATCTACAGTAAAGCC 59.343 40.741 0.00 0.00 44.79 4.35
1751 1943 8.590719 GGTAAATCACCTATCTACAGTAAAGC 57.409 38.462 0.00 0.00 44.79 3.51
1767 1959 6.436218 ACTGTATTTTGGAAGGGGTAAATCAC 59.564 38.462 0.00 0.00 0.00 3.06
1768 1960 6.557568 ACTGTATTTTGGAAGGGGTAAATCA 58.442 36.000 0.00 0.00 0.00 2.57
1769 1961 7.832685 AGTACTGTATTTTGGAAGGGGTAAATC 59.167 37.037 0.00 0.00 0.00 2.17
1770 1962 7.705700 AGTACTGTATTTTGGAAGGGGTAAAT 58.294 34.615 0.00 0.00 0.00 1.40
1771 1963 7.093965 AGTACTGTATTTTGGAAGGGGTAAA 57.906 36.000 0.00 0.00 0.00 2.01
1773 1965 6.296605 GGAAGTACTGTATTTTGGAAGGGGTA 60.297 42.308 0.00 0.00 0.00 3.69
1774 1966 5.516062 GGAAGTACTGTATTTTGGAAGGGGT 60.516 44.000 0.00 0.00 0.00 4.95
1775 1967 4.948004 GGAAGTACTGTATTTTGGAAGGGG 59.052 45.833 0.00 0.00 0.00 4.79
1776 1968 5.816682 AGGAAGTACTGTATTTTGGAAGGG 58.183 41.667 0.00 0.00 0.00 3.95
1777 1969 5.880887 GGAGGAAGTACTGTATTTTGGAAGG 59.119 44.000 0.00 0.00 0.00 3.46
1778 1970 5.581085 CGGAGGAAGTACTGTATTTTGGAAG 59.419 44.000 0.00 0.00 0.00 3.46
1779 1971 5.012354 ACGGAGGAAGTACTGTATTTTGGAA 59.988 40.000 0.00 0.00 0.00 3.53
1780 1972 4.529377 ACGGAGGAAGTACTGTATTTTGGA 59.471 41.667 0.00 0.00 0.00 3.53
1781 1973 4.828829 ACGGAGGAAGTACTGTATTTTGG 58.171 43.478 0.00 0.00 0.00 3.28
1782 1974 5.350640 GGAACGGAGGAAGTACTGTATTTTG 59.649 44.000 0.00 0.00 0.00 2.44
1783 1975 5.247792 AGGAACGGAGGAAGTACTGTATTTT 59.752 40.000 0.00 0.00 0.00 1.82
1784 1976 4.776308 AGGAACGGAGGAAGTACTGTATTT 59.224 41.667 0.00 0.00 0.00 1.40
1785 1977 4.351127 AGGAACGGAGGAAGTACTGTATT 58.649 43.478 0.00 0.00 0.00 1.89
1786 1978 3.978610 AGGAACGGAGGAAGTACTGTAT 58.021 45.455 0.00 0.00 0.00 2.29
1787 1979 3.446442 AGGAACGGAGGAAGTACTGTA 57.554 47.619 0.00 0.00 0.00 2.74
1788 1980 2.305858 AGGAACGGAGGAAGTACTGT 57.694 50.000 0.00 0.00 0.00 3.55
1789 1981 4.796038 TTTAGGAACGGAGGAAGTACTG 57.204 45.455 0.00 0.00 0.00 2.74
1790 1982 8.773033 TTATATTTAGGAACGGAGGAAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
1791 1983 8.637099 ACTTATATTTAGGAACGGAGGAAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
1792 1984 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
1793 1985 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
1794 1986 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
1795 1987 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
1796 1988 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
1797 1989 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
1828 2020 9.151471 GCATCCGTATGTAGTACATATTGAAAT 57.849 33.333 22.65 13.28 42.39 2.17
1829 2021 8.145122 TGCATCCGTATGTAGTACATATTGAAA 58.855 33.333 22.65 12.02 42.39 2.69
1831 2023 7.222000 TGCATCCGTATGTAGTACATATTGA 57.778 36.000 22.65 20.57 42.39 2.57
1835 2027 9.841295 TCTATATGCATCCGTATGTAGTACATA 57.159 33.333 17.33 17.33 39.88 2.29
1836 2028 8.622157 GTCTATATGCATCCGTATGTAGTACAT 58.378 37.037 19.36 19.36 42.35 2.29
1838 2030 7.124471 CGTCTATATGCATCCGTATGTAGTAC 58.876 42.308 0.19 0.00 32.91 2.73
1840 2032 5.066117 CCGTCTATATGCATCCGTATGTAGT 59.934 44.000 0.19 0.00 32.91 2.73
1841 2033 5.296035 TCCGTCTATATGCATCCGTATGTAG 59.704 44.000 0.19 0.00 35.38 2.74
1842 2034 5.187687 TCCGTCTATATGCATCCGTATGTA 58.812 41.667 0.19 0.00 35.38 2.29
1844 2036 4.096532 ACTCCGTCTATATGCATCCGTATG 59.903 45.833 0.19 0.00 36.09 2.39
1845 2037 4.270834 ACTCCGTCTATATGCATCCGTAT 58.729 43.478 0.19 0.00 0.00 3.06
1846 2038 3.682696 ACTCCGTCTATATGCATCCGTA 58.317 45.455 0.19 0.00 0.00 4.02
1847 2039 2.515854 ACTCCGTCTATATGCATCCGT 58.484 47.619 0.19 0.00 0.00 4.69
1848 2040 3.577649 AACTCCGTCTATATGCATCCG 57.422 47.619 0.19 0.00 0.00 4.18
1849 2041 6.071840 ACTCTAAACTCCGTCTATATGCATCC 60.072 42.308 0.19 0.00 0.00 3.51
1850 2042 6.804295 CACTCTAAACTCCGTCTATATGCATC 59.196 42.308 0.19 0.00 0.00 3.91
1851 2043 6.265649 ACACTCTAAACTCCGTCTATATGCAT 59.734 38.462 3.79 3.79 0.00 3.96
1852 2044 5.593095 ACACTCTAAACTCCGTCTATATGCA 59.407 40.000 0.00 0.00 0.00 3.96
1853 2045 6.074544 ACACTCTAAACTCCGTCTATATGC 57.925 41.667 0.00 0.00 0.00 3.14
1854 2046 8.604640 TCTACACTCTAAACTCCGTCTATATG 57.395 38.462 0.00 0.00 0.00 1.78
1855 2047 9.796180 AATCTACACTCTAAACTCCGTCTATAT 57.204 33.333 0.00 0.00 0.00 0.86
1856 2048 9.270640 GAATCTACACTCTAAACTCCGTCTATA 57.729 37.037 0.00 0.00 0.00 1.31
1857 2049 7.774157 TGAATCTACACTCTAAACTCCGTCTAT 59.226 37.037 0.00 0.00 0.00 1.98
1858 2050 7.108194 TGAATCTACACTCTAAACTCCGTCTA 58.892 38.462 0.00 0.00 0.00 2.59
1859 2051 5.944599 TGAATCTACACTCTAAACTCCGTCT 59.055 40.000 0.00 0.00 0.00 4.18
1860 2052 6.192234 TGAATCTACACTCTAAACTCCGTC 57.808 41.667 0.00 0.00 0.00 4.79
1861 2053 6.777213 ATGAATCTACACTCTAAACTCCGT 57.223 37.500 0.00 0.00 0.00 4.69
1862 2054 9.751542 ATAAATGAATCTACACTCTAAACTCCG 57.248 33.333 0.00 0.00 0.00 4.63
1870 2062 8.897752 GGAGCAAAATAAATGAATCTACACTCT 58.102 33.333 0.00 0.00 0.00 3.24
1872 2064 7.336931 ACGGAGCAAAATAAATGAATCTACACT 59.663 33.333 0.00 0.00 0.00 3.55
1873 2065 7.472543 ACGGAGCAAAATAAATGAATCTACAC 58.527 34.615 0.00 0.00 0.00 2.90
1874 2066 7.624360 ACGGAGCAAAATAAATGAATCTACA 57.376 32.000 0.00 0.00 0.00 2.74
1881 2073 9.431887 GGACTATATACGGAGCAAAATAAATGA 57.568 33.333 0.00 0.00 0.00 2.57
1883 2075 9.959721 ATGGACTATATACGGAGCAAAATAAAT 57.040 29.630 0.00 0.00 0.00 1.40
1887 2079 9.383519 CAATATGGACTATATACGGAGCAAAAT 57.616 33.333 0.00 0.00 31.68 1.82
1888 2080 7.822334 CCAATATGGACTATATACGGAGCAAAA 59.178 37.037 0.00 0.00 40.96 2.44
1889 2081 7.179516 TCCAATATGGACTATATACGGAGCAAA 59.820 37.037 0.00 0.00 42.67 3.68
1890 2082 6.666113 TCCAATATGGACTATATACGGAGCAA 59.334 38.462 0.00 0.00 42.67 3.91
1891 2083 6.192044 TCCAATATGGACTATATACGGAGCA 58.808 40.000 0.00 0.00 42.67 4.26
1892 2084 6.710597 TCCAATATGGACTATATACGGAGC 57.289 41.667 0.00 0.00 42.67 4.70
1922 2114 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
1923 2115 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
1924 2116 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1925 2117 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1926 2118 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1927 2119 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1928 2120 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1930 2122 6.207417 CGTACTCCCTCCGTTCCTAAATATAA 59.793 42.308 0.00 0.00 0.00 0.98
1931 2123 5.707298 CGTACTCCCTCCGTTCCTAAATATA 59.293 44.000 0.00 0.00 0.00 0.86
1932 2124 4.522022 CGTACTCCCTCCGTTCCTAAATAT 59.478 45.833 0.00 0.00 0.00 1.28
1933 2125 3.885297 CGTACTCCCTCCGTTCCTAAATA 59.115 47.826 0.00 0.00 0.00 1.40
1935 2127 2.094675 CGTACTCCCTCCGTTCCTAAA 58.905 52.381 0.00 0.00 0.00 1.85
1936 2128 1.004745 ACGTACTCCCTCCGTTCCTAA 59.995 52.381 0.00 0.00 0.00 2.69
1937 2129 0.620556 ACGTACTCCCTCCGTTCCTA 59.379 55.000 0.00 0.00 0.00 2.94
1938 2130 0.251519 AACGTACTCCCTCCGTTCCT 60.252 55.000 0.00 0.00 40.46 3.36
1939 2131 0.605083 AAACGTACTCCCTCCGTTCC 59.395 55.000 0.00 0.00 43.32 3.62
1940 2132 2.445565 AAAACGTACTCCCTCCGTTC 57.554 50.000 0.00 0.00 43.32 3.95
1943 2135 2.489329 TGTCTAAAACGTACTCCCTCCG 59.511 50.000 0.00 0.00 0.00 4.63
1945 2137 4.159135 TCCATGTCTAAAACGTACTCCCTC 59.841 45.833 0.00 0.00 0.00 4.30
1946 2138 4.081807 GTCCATGTCTAAAACGTACTCCCT 60.082 45.833 0.00 0.00 0.00 4.20
1947 2139 4.179298 GTCCATGTCTAAAACGTACTCCC 58.821 47.826 0.00 0.00 0.00 4.30
1948 2140 4.624452 GTGTCCATGTCTAAAACGTACTCC 59.376 45.833 0.00 0.00 0.00 3.85
1949 2141 5.345202 CAGTGTCCATGTCTAAAACGTACTC 59.655 44.000 0.00 0.00 0.00 2.59
1950 2142 5.221382 ACAGTGTCCATGTCTAAAACGTACT 60.221 40.000 0.00 0.00 0.00 2.73
1951 2143 4.986659 ACAGTGTCCATGTCTAAAACGTAC 59.013 41.667 0.00 0.00 0.00 3.67
1952 2144 5.204409 ACAGTGTCCATGTCTAAAACGTA 57.796 39.130 0.00 0.00 0.00 3.57
1971 2290 2.440539 AACGTAGTGCCTTGAGACAG 57.559 50.000 0.00 0.00 45.00 3.51
2108 2438 9.372369 GCACTAGTCAAACTTATCTAACTTGAT 57.628 33.333 0.00 0.00 0.00 2.57
2130 2460 1.896465 GACAACACCCTAGAGAGCACT 59.104 52.381 0.00 0.00 0.00 4.40
2131 2461 1.896465 AGACAACACCCTAGAGAGCAC 59.104 52.381 0.00 0.00 0.00 4.40
2156 2486 2.961526 TTCAGATGCTACCTCCGTTC 57.038 50.000 0.00 0.00 0.00 3.95
2157 2487 3.244422 TGTTTTCAGATGCTACCTCCGTT 60.244 43.478 0.00 0.00 0.00 4.44
2186 2517 4.321230 CCACAGTTGAATGGACTTTTAGGC 60.321 45.833 0.00 0.00 38.34 3.93
2198 2529 3.012518 GCAGAGCATACCACAGTTGAAT 58.987 45.455 0.00 0.00 0.00 2.57
2243 2587 2.383442 AGTCTAGGGTGTCACACTGT 57.617 50.000 18.38 0.00 31.80 3.55
2391 2735 7.448469 AGCTTACAAATTACAAGAGTTGGACAT 59.552 33.333 0.00 0.00 34.12 3.06
2395 2739 5.858581 GCAGCTTACAAATTACAAGAGTTGG 59.141 40.000 0.00 0.00 34.12 3.77
2406 2750 7.280652 ACTTTGAACATTTGCAGCTTACAAATT 59.719 29.630 17.77 8.85 43.42 1.82
2407 2751 6.762661 ACTTTGAACATTTGCAGCTTACAAAT 59.237 30.769 15.56 15.56 46.05 2.32
2436 2782 5.697178 CCATGTGAAACTGCAATTTTCATCA 59.303 36.000 20.45 18.97 43.16 3.07
2440 2786 6.401367 GCATACCATGTGAAACTGCAATTTTC 60.401 38.462 11.80 11.80 38.04 2.29
2441 2787 5.409214 GCATACCATGTGAAACTGCAATTTT 59.591 36.000 0.00 0.00 38.04 1.82
2510 2856 0.394488 TGTTGTTTGAAGCACCCCGA 60.394 50.000 0.00 0.00 0.00 5.14
2522 2868 0.529555 GCGTGCCCAACATGTTGTTT 60.530 50.000 31.20 0.00 38.77 2.83
2546 2892 3.817709 TCACGGATTACATGAGCATGA 57.182 42.857 16.70 0.00 41.20 3.07
2588 2942 1.279271 AGTAGCGCCTTCAAGGACAAT 59.721 47.619 7.98 0.00 37.67 2.71
2676 3030 2.605338 CGTTGTCCTTGACCAGCATTTG 60.605 50.000 0.00 0.00 0.00 2.32
2686 3040 2.280524 CACCGGCGTTGTCCTTGA 60.281 61.111 6.01 0.00 0.00 3.02
2770 3126 6.493458 AGCCAATAACTTGTACTTCCATTTGT 59.507 34.615 0.00 0.00 0.00 2.83
2776 3132 4.395231 GTGGAGCCAATAACTTGTACTTCC 59.605 45.833 0.00 0.00 0.00 3.46
2784 3140 4.574674 TCATGAGTGGAGCCAATAACTT 57.425 40.909 0.00 0.00 0.00 2.66
2789 3145 4.161001 GGAAATTTCATGAGTGGAGCCAAT 59.839 41.667 19.49 0.00 0.00 3.16
2815 3171 7.337942 GGAAATAAAAAGAAGAGATCTGAGCCA 59.662 37.037 0.00 0.00 38.79 4.75
2845 3201 3.743521 AGTTTCAGCAGCATGTACTTCA 58.256 40.909 0.00 0.00 39.31 3.02
2951 3308 2.936919 TTCTGTTGACCACATCAGCT 57.063 45.000 0.00 0.00 41.14 4.24
2952 3309 4.510038 AAATTCTGTTGACCACATCAGC 57.490 40.909 0.00 0.00 41.14 4.26
2968 3325 7.349711 TGTAGCACGTCTTAAAGTGAAAATTC 58.650 34.615 8.90 0.00 40.56 2.17
2974 3331 4.841443 TCTGTAGCACGTCTTAAAGTGA 57.159 40.909 8.90 0.00 40.56 3.41
2975 3332 5.900339 TTTCTGTAGCACGTCTTAAAGTG 57.100 39.130 0.00 2.18 41.01 3.16
2977 3334 6.526566 ACTTTTCTGTAGCACGTCTTAAAG 57.473 37.500 0.00 0.00 0.00 1.85
2978 3335 7.205297 ACTACTTTTCTGTAGCACGTCTTAAA 58.795 34.615 0.00 0.00 42.53 1.52
2979 3336 6.742109 ACTACTTTTCTGTAGCACGTCTTAA 58.258 36.000 0.00 0.00 42.53 1.85
2980 3337 6.323203 ACTACTTTTCTGTAGCACGTCTTA 57.677 37.500 0.00 0.00 42.53 2.10
3032 3389 5.016831 CCAGCCAAAAGTAGGTTCCTTAAT 58.983 41.667 0.00 0.00 0.00 1.40
3079 3436 0.538118 CAAATCAATGGCCCCACTGG 59.462 55.000 0.00 0.00 37.09 4.00
3081 3438 2.323999 TTCAAATCAATGGCCCCACT 57.676 45.000 0.00 0.00 0.00 4.00
3083 3440 2.911636 ACATTTCAAATCAATGGCCCCA 59.088 40.909 0.00 0.00 36.15 4.96
3084 3441 3.632643 ACATTTCAAATCAATGGCCCC 57.367 42.857 0.00 0.00 36.15 5.80
3133 3492 3.284323 TCTCCTAACTATCGATTGCGC 57.716 47.619 1.71 0.00 37.46 6.09
3134 3493 6.420903 TGATTTTCTCCTAACTATCGATTGCG 59.579 38.462 1.71 0.00 39.35 4.85
3151 3510 6.488344 GGTTCTCCAAAGACTCTTGATTTTCT 59.512 38.462 0.00 0.00 0.00 2.52
3199 3559 4.568359 AGATGAGATAACAATGTCACACGC 59.432 41.667 0.00 0.00 0.00 5.34
3206 3566 5.704515 GGCATAGCAGATGAGATAACAATGT 59.295 40.000 2.96 0.00 0.00 2.71
3218 3578 2.616634 ACAGTCTGGCATAGCAGATG 57.383 50.000 4.53 0.00 0.00 2.90
3318 3678 3.496331 TGGGGGTCTAAAGCAAGAAAAG 58.504 45.455 0.00 0.00 0.00 2.27
3329 3689 6.140377 AGAACAGAAAATTTTGGGGGTCTAA 58.860 36.000 8.47 0.00 0.00 2.10
3330 3690 5.711698 AGAACAGAAAATTTTGGGGGTCTA 58.288 37.500 8.47 0.00 0.00 2.59
3332 3692 4.955811 AGAACAGAAAATTTTGGGGGTC 57.044 40.909 8.47 5.67 0.00 4.46
3333 3693 4.685848 GCAAGAACAGAAAATTTTGGGGGT 60.686 41.667 8.47 0.00 0.00 4.95
3336 3696 5.504501 GCAAGCAAGAACAGAAAATTTTGGG 60.505 40.000 8.47 2.58 0.00 4.12
3384 3744 0.623194 TGGGCAAGCTTGTATAGGCA 59.377 50.000 26.55 2.46 0.00 4.75
3406 3766 1.247567 GGTGTTGCTGGTATGCTTGT 58.752 50.000 0.00 0.00 0.00 3.16
3415 3775 3.964875 GCACCGTGGTGTTGCTGG 61.965 66.667 19.56 0.00 46.90 4.85
3446 3806 0.686112 GCCCTGCTAGTCTCTCCACT 60.686 60.000 0.00 0.00 0.00 4.00
3475 3835 8.850156 GTTGGTTCTATATGGCAGAATAACATT 58.150 33.333 0.00 0.00 34.95 2.71
3477 3837 6.770785 GGTTGGTTCTATATGGCAGAATAACA 59.229 38.462 13.74 3.96 35.67 2.41
3480 3840 6.101150 ACAGGTTGGTTCTATATGGCAGAATA 59.899 38.462 0.00 0.00 34.67 1.75
3481 3841 5.103940 ACAGGTTGGTTCTATATGGCAGAAT 60.104 40.000 0.00 0.00 34.67 2.40
3694 4054 1.059098 ATAGGGAGGATGATGCGCAA 58.941 50.000 17.11 0.00 0.00 4.85
3739 4099 3.929610 GGAATGCTAGAATCATACGAGCC 59.070 47.826 0.00 0.00 35.69 4.70
3751 4111 3.949754 CAGGCAAATGAAGGAATGCTAGA 59.050 43.478 0.00 0.00 38.79 2.43
3792 4152 1.086067 CATCACAGGTAGCCACAGCG 61.086 60.000 0.00 0.00 46.67 5.18
3879 4239 2.217038 GGCAGACCAGACCACCTCA 61.217 63.158 0.00 0.00 35.26 3.86
3912 4272 4.997395 TGAACACTAGCATTCTCTTTGACC 59.003 41.667 7.79 0.00 0.00 4.02
3965 4325 1.511850 CAGTGTTCCATCAGCGTCAA 58.488 50.000 0.00 0.00 0.00 3.18
4047 4407 2.478370 CGCATGATTTAACAGCACCAGG 60.478 50.000 0.00 0.00 0.00 4.45
4202 4562 0.469331 ATGCATGCCATCAGGAAGGG 60.469 55.000 16.68 0.00 36.89 3.95
4340 4700 0.539986 TGCCTCTGTATCCCGGAAAC 59.460 55.000 0.73 0.00 0.00 2.78
4390 4750 1.812571 CACAAACACCAGCCCATAGTC 59.187 52.381 0.00 0.00 0.00 2.59
4746 5106 4.556135 CACGAACAATCATTCAAGCATGAC 59.444 41.667 0.00 0.00 35.97 3.06
4772 5132 1.101331 CTGCTGGAAGAATGAAGCCC 58.899 55.000 0.00 0.00 34.07 5.19
4793 5153 2.104111 CAGTAACCAGTGGAGGTGTCAA 59.896 50.000 18.40 0.00 42.25 3.18
4846 5206 3.365472 AGTAACCTGGGGAATTTGCATC 58.635 45.455 0.00 0.00 0.00 3.91
4847 5207 3.245586 TGAGTAACCTGGGGAATTTGCAT 60.246 43.478 0.00 0.00 0.00 3.96
4850 5210 3.193479 GCTTGAGTAACCTGGGGAATTTG 59.807 47.826 0.00 0.00 0.00 2.32
4861 5221 8.017946 CAGAGAACTAAAATTGCTTGAGTAACC 58.982 37.037 0.00 0.00 0.00 2.85
5030 5390 7.201591 CGATAATGTCATCATCTTCTAATGGCC 60.202 40.741 0.00 0.00 32.56 5.36
5031 5391 7.547019 TCGATAATGTCATCATCTTCTAATGGC 59.453 37.037 0.00 0.00 32.56 4.40
5106 5466 5.689068 CACTTTTGAGAAATCTTCAGTTGCC 59.311 40.000 0.00 0.00 0.00 4.52
5180 5540 1.032014 TCTTTTCACAGCAACCTGCC 58.968 50.000 0.00 0.00 46.52 4.85
5229 5589 7.361286 CCAATAGTCTGAACCTCTGCTAAAAAC 60.361 40.741 0.00 0.00 0.00 2.43
5340 5700 5.310409 TCCACCTATCCAAAGATCCATTC 57.690 43.478 0.00 0.00 33.67 2.67
5601 5961 3.064018 TCAGGAGCCAAGTAACCTGGC 62.064 57.143 8.94 8.94 46.64 4.85
5626 5986 4.102035 TCTCGTTGATCACAGATGTCAG 57.898 45.455 0.00 0.00 0.00 3.51
5676 6036 6.969366 TCTACCGCAAATAATTTCCATGATG 58.031 36.000 0.00 0.00 0.00 3.07
5727 6087 2.266554 CTGACGAGATGACAGCTTTCC 58.733 52.381 0.00 0.00 33.78 3.13
5734 6094 0.533951 AGCATGCTGACGAGATGACA 59.466 50.000 21.98 0.00 0.00 3.58
5759 6119 1.608801 GCTGGTCATTTTTGGCCTTGG 60.609 52.381 3.32 0.00 34.00 3.61
5771 6131 0.773644 AAGGTCCAACAGCTGGTCAT 59.226 50.000 19.93 0.00 46.51 3.06
5811 6171 3.186702 TCATCCAAATGGCATTGCATG 57.813 42.857 14.47 15.00 31.12 4.06
5820 6180 0.179129 GCGCCACTTCATCCAAATGG 60.179 55.000 0.00 0.00 33.42 3.16
5883 6245 2.270352 TTCAGTCATTGAAGGCCGTT 57.730 45.000 0.00 0.00 40.82 4.44
5893 6255 2.839486 TCTTGACGGCTTCAGTCATT 57.161 45.000 0.00 0.00 46.44 2.57
5899 6261 0.250234 CCAGGATCTTGACGGCTTCA 59.750 55.000 6.37 0.00 0.00 3.02
5911 6273 4.202503 ACATCCATTGTACCATCCAGGATC 60.203 45.833 0.00 0.00 42.07 3.36
5924 6286 3.888930 AGTTCGGTTTCAACATCCATTGT 59.111 39.130 0.00 0.00 41.53 2.71
5971 6333 1.952296 GCTCTATTTGCCACCATCAGG 59.048 52.381 0.00 0.00 42.21 3.86
5974 6336 2.648059 ACTGCTCTATTTGCCACCATC 58.352 47.619 0.00 0.00 0.00 3.51
5992 6354 2.048127 GCAGTCTTCCCGCGAACT 60.048 61.111 8.23 0.00 0.00 3.01
5998 6360 1.294659 GAGTTGCAGCAGTCTTCCCG 61.295 60.000 2.55 0.00 0.00 5.14
6057 6419 4.365514 TCATGTTCCAAACCTTGAGCTA 57.634 40.909 0.00 0.00 0.00 3.32
6079 6441 2.813754 GCTGCACAGGACAGATGTAAAA 59.186 45.455 0.00 0.00 37.32 1.52
6082 6444 0.975887 TGCTGCACAGGACAGATGTA 59.024 50.000 0.00 0.00 37.32 2.29
6087 6449 0.733150 CATGATGCTGCACAGGACAG 59.267 55.000 3.57 0.00 38.22 3.51
6138 6500 2.958818 ACTATTGATACCAGGAGGCGA 58.041 47.619 0.00 0.00 39.06 5.54
6139 6501 3.753294 AACTATTGATACCAGGAGGCG 57.247 47.619 0.00 0.00 39.06 5.52
6140 6502 5.163343 TGTGTAACTATTGATACCAGGAGGC 60.163 44.000 0.00 0.00 36.39 4.70
6141 6503 6.098409 ACTGTGTAACTATTGATACCAGGAGG 59.902 42.308 0.00 0.00 38.04 4.30
6165 6527 8.896744 GGGAAGTACAGTTTTTACCCATTATAC 58.103 37.037 0.00 0.00 36.47 1.47
6174 6536 3.743521 ACCCGGGAAGTACAGTTTTTAC 58.256 45.455 32.02 0.00 0.00 2.01
6175 6537 4.436113 AACCCGGGAAGTACAGTTTTTA 57.564 40.909 32.02 0.00 0.00 1.52
6181 6543 3.622166 AATGTAACCCGGGAAGTACAG 57.378 47.619 32.02 0.00 0.00 2.74
6230 6592 5.756195 TGCATACATATCAAACTTCAGGC 57.244 39.130 0.00 0.00 0.00 4.85
6244 6606 2.507058 ACCTCACCACAGATGCATACAT 59.493 45.455 0.00 0.00 39.98 2.29
6264 6627 4.975502 CGAGCTCACTGAGATGATTAGAAC 59.024 45.833 15.40 0.00 0.00 3.01
6279 6642 2.350484 GGTTAAGCAAAACCGAGCTCAC 60.350 50.000 15.40 0.00 40.90 3.51
6313 6979 2.477375 TGCCGAAACATTTGTAGACGAC 59.523 45.455 0.00 0.00 0.00 4.34
6315 6981 2.724839 GCTGCCGAAACATTTGTAGACG 60.725 50.000 0.00 0.00 0.00 4.18
6317 6983 2.499197 TGCTGCCGAAACATTTGTAGA 58.501 42.857 0.00 0.00 0.00 2.59
6318 6984 2.987413 TGCTGCCGAAACATTTGTAG 57.013 45.000 0.00 0.00 0.00 2.74
6331 7001 5.409826 AGCTAATATAACGAAGAATGCTGCC 59.590 40.000 0.00 0.00 0.00 4.85
6335 7005 7.947299 CGAGAAAGCTAATATAACGAAGAATGC 59.053 37.037 0.00 0.00 0.00 3.56
6336 7006 9.181805 TCGAGAAAGCTAATATAACGAAGAATG 57.818 33.333 0.00 0.00 0.00 2.67
6342 7012 6.872628 TCCTCGAGAAAGCTAATATAACGA 57.127 37.500 15.71 0.00 0.00 3.85
6348 7018 7.556844 ACAAAGAATCCTCGAGAAAGCTAATA 58.443 34.615 15.71 0.00 0.00 0.98
6350 7020 5.794894 ACAAAGAATCCTCGAGAAAGCTAA 58.205 37.500 15.71 0.00 0.00 3.09
6352 7022 4.278975 ACAAAGAATCCTCGAGAAAGCT 57.721 40.909 15.71 2.93 0.00 3.74
6358 7028 6.487689 AAAAGCTAACAAAGAATCCTCGAG 57.512 37.500 5.13 5.13 0.00 4.04
6359 7029 6.877611 AAAAAGCTAACAAAGAATCCTCGA 57.122 33.333 0.00 0.00 0.00 4.04
6418 7088 9.463902 TCCCACGAAATTAGGTTTTATAATTCA 57.536 29.630 0.00 0.00 32.90 2.57
6422 7092 9.463902 TCAATCCCACGAAATTAGGTTTTATAA 57.536 29.630 0.00 0.00 0.00 0.98
6423 7093 8.895737 GTCAATCCCACGAAATTAGGTTTTATA 58.104 33.333 0.00 0.00 0.00 0.98
6433 8664 2.290071 ACCTCGTCAATCCCACGAAATT 60.290 45.455 0.00 0.00 45.27 1.82
6447 8678 2.105128 CTGGCGATCCACCTCGTC 59.895 66.667 1.42 0.00 43.36 4.20
6477 8708 2.554462 GGCTGGAAACCTCTTGAAAGTC 59.446 50.000 0.00 0.00 0.00 3.01
6486 8717 0.827507 TGCTTTGGGCTGGAAACCTC 60.828 55.000 0.00 0.00 42.39 3.85
6488 8719 0.686789 ATTGCTTTGGGCTGGAAACC 59.313 50.000 0.00 0.00 42.39 3.27
6501 8732 1.267806 CCGCACTGTCTTTGATTGCTT 59.732 47.619 0.00 0.00 0.00 3.91
6504 8735 2.414481 CTCTCCGCACTGTCTTTGATTG 59.586 50.000 0.00 0.00 0.00 2.67
6505 8736 2.613977 CCTCTCCGCACTGTCTTTGATT 60.614 50.000 0.00 0.00 0.00 2.57
6506 8737 1.066573 CCTCTCCGCACTGTCTTTGAT 60.067 52.381 0.00 0.00 0.00 2.57
6508 8739 0.318441 TCCTCTCCGCACTGTCTTTG 59.682 55.000 0.00 0.00 0.00 2.77
6516 8761 2.801631 CCAGGGATCCTCTCCGCAC 61.802 68.421 12.58 0.00 46.01 5.34
6517 8762 2.444706 CCAGGGATCCTCTCCGCA 60.445 66.667 12.58 0.00 46.01 5.69
6519 8764 0.105964 TCTTCCAGGGATCCTCTCCG 60.106 60.000 12.58 0.25 46.01 4.63
6530 8775 1.227497 GAGGCGCTGATCTTCCAGG 60.227 63.158 7.64 0.00 34.82 4.45
6535 8780 3.099211 ATGCGGAGGCGCTGATCTT 62.099 57.895 7.64 0.00 44.10 2.40
6537 8791 3.344215 CATGCGGAGGCGCTGATC 61.344 66.667 7.64 3.04 44.10 2.92
6542 8796 1.298638 GAATTTCATGCGGAGGCGC 60.299 57.895 0.00 0.00 44.10 6.53
6545 8799 0.657840 GACGGAATTTCATGCGGAGG 59.342 55.000 0.00 0.00 38.57 4.30
6549 8803 2.518949 CTTTGGACGGAATTTCATGCG 58.481 47.619 0.00 0.00 40.25 4.73
6573 8827 3.315191 GCCTTTTACAGCACTGTCTTTGA 59.685 43.478 6.56 0.00 43.74 2.69
6574 8828 3.066621 TGCCTTTTACAGCACTGTCTTTG 59.933 43.478 6.56 0.00 43.74 2.77
6576 8830 2.930950 TGCCTTTTACAGCACTGTCTT 58.069 42.857 6.56 0.00 43.74 3.01
6581 8835 1.686587 GGGTTTGCCTTTTACAGCACT 59.313 47.619 0.00 0.00 39.10 4.40
6582 8836 1.601914 CGGGTTTGCCTTTTACAGCAC 60.602 52.381 0.00 0.00 39.10 4.40
6586 8855 2.873133 CAACGGGTTTGCCTTTTACA 57.127 45.000 0.00 0.00 34.45 2.41
6616 8889 4.533566 GCAAAGGCTTACGTGTGC 57.466 55.556 0.00 2.11 36.96 4.57
6626 8907 1.454201 GGTAACAGAGGAGCAAAGGC 58.546 55.000 0.00 0.00 41.61 4.35
6673 8954 1.880271 TCACGCCCGTATGTGAAAAA 58.120 45.000 0.00 0.00 41.82 1.94
6674 8955 3.608760 TCACGCCCGTATGTGAAAA 57.391 47.368 0.00 0.00 41.82 2.29
6677 8958 1.001068 TCTTTTCACGCCCGTATGTGA 59.999 47.619 0.00 0.00 42.98 3.58
6682 8963 0.940519 CACGTCTTTTCACGCCCGTA 60.941 55.000 0.00 0.00 43.93 4.02
6685 8966 1.568025 GTCACGTCTTTTCACGCCC 59.432 57.895 0.00 0.00 43.93 6.13
6718 8999 1.503818 CGCCGGTGCTGTGTTTTACT 61.504 55.000 0.00 0.00 34.43 2.24
6719 9000 1.082366 CGCCGGTGCTGTGTTTTAC 60.082 57.895 0.00 0.00 34.43 2.01
6720 9001 2.255172 CCGCCGGTGCTGTGTTTTA 61.255 57.895 10.27 0.00 34.43 1.52
6723 9010 3.876589 CTACCGCCGGTGCTGTGTT 62.877 63.158 21.20 0.00 36.19 3.32
6727 9014 2.510064 TTTACCTACCGCCGGTGCTG 62.510 60.000 21.20 9.53 36.19 4.41
6741 9028 3.023591 GCGACCGCTGCTGTTTACC 62.024 63.158 7.19 0.00 38.26 2.85
6848 9138 1.373748 AAATTTGCCGCTGCTGCTG 60.374 52.632 16.81 8.34 38.71 4.41
6849 9139 1.373748 CAAATTTGCCGCTGCTGCT 60.374 52.632 16.81 0.00 38.71 4.24
6850 9140 0.738412 ATCAAATTTGCCGCTGCTGC 60.738 50.000 13.54 9.23 38.71 5.25
6851 9141 2.565210 TATCAAATTTGCCGCTGCTG 57.435 45.000 13.54 0.00 38.71 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.