Multiple sequence alignment - TraesCS7A01G354300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G354300 chr7A 100.000 2798 0 0 1 2798 518750126 518747329 0.000000e+00 5168
1 TraesCS7A01G354300 chr7D 89.439 1231 90 27 745 1957 477200834 477202042 0.000000e+00 1517
2 TraesCS7A01G354300 chr7D 85.973 221 21 9 2240 2453 477202338 477202555 7.800000e-56 228
3 TraesCS7A01G354300 chr7D 91.195 159 11 3 2009 2166 477202131 477202287 2.180000e-51 213
4 TraesCS7A01G354300 chr7D 86.538 156 16 5 2342 2495 477211330 477211482 1.720000e-37 167
5 TraesCS7A01G354300 chr7D 76.357 258 22 15 2097 2318 477210225 477210479 4.930000e-18 102
6 TraesCS7A01G354300 chr7B 87.778 1260 79 43 740 1956 501679214 501680441 0.000000e+00 1404
7 TraesCS7A01G354300 chr7B 81.973 527 43 21 2009 2495 501680545 501681059 1.560000e-107 399
8 TraesCS7A01G354300 chr5A 92.827 711 45 5 1 707 436824402 436823694 0.000000e+00 1026
9 TraesCS7A01G354300 chr5A 91.317 714 51 8 1 704 522423800 522424512 0.000000e+00 965
10 TraesCS7A01G354300 chr2A 92.645 707 51 1 1 707 778865223 778864518 0.000000e+00 1016
11 TraesCS7A01G354300 chr2A 91.561 711 53 6 1 707 754607685 754608392 0.000000e+00 974
12 TraesCS7A01G354300 chr3A 92.045 704 50 3 1 704 652811923 652812620 0.000000e+00 985
13 TraesCS7A01G354300 chr3A 92.219 694 43 7 1 688 641880499 641879811 0.000000e+00 972
14 TraesCS7A01G354300 chr6D 90.999 711 57 5 1 707 452835311 452834604 0.000000e+00 952
15 TraesCS7A01G354300 chr4D 90.871 712 58 5 1 706 293372870 293372160 0.000000e+00 948
16 TraesCS7A01G354300 chr4A 90.490 715 63 4 1 712 587246957 587247669 0.000000e+00 939


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G354300 chr7A 518747329 518750126 2797 True 5168.000000 5168 100.0000 1 2798 1 chr7A.!!$R1 2797
1 TraesCS7A01G354300 chr7D 477200834 477202555 1721 False 652.666667 1517 88.8690 745 2453 3 chr7D.!!$F1 1708
2 TraesCS7A01G354300 chr7B 501679214 501681059 1845 False 901.500000 1404 84.8755 740 2495 2 chr7B.!!$F1 1755
3 TraesCS7A01G354300 chr5A 436823694 436824402 708 True 1026.000000 1026 92.8270 1 707 1 chr5A.!!$R1 706
4 TraesCS7A01G354300 chr5A 522423800 522424512 712 False 965.000000 965 91.3170 1 704 1 chr5A.!!$F1 703
5 TraesCS7A01G354300 chr2A 778864518 778865223 705 True 1016.000000 1016 92.6450 1 707 1 chr2A.!!$R1 706
6 TraesCS7A01G354300 chr2A 754607685 754608392 707 False 974.000000 974 91.5610 1 707 1 chr2A.!!$F1 706
7 TraesCS7A01G354300 chr3A 652811923 652812620 697 False 985.000000 985 92.0450 1 704 1 chr3A.!!$F1 703
8 TraesCS7A01G354300 chr3A 641879811 641880499 688 True 972.000000 972 92.2190 1 688 1 chr3A.!!$R1 687
9 TraesCS7A01G354300 chr6D 452834604 452835311 707 True 952.000000 952 90.9990 1 707 1 chr6D.!!$R1 706
10 TraesCS7A01G354300 chr4D 293372160 293372870 710 True 948.000000 948 90.8710 1 706 1 chr4D.!!$R1 705
11 TraesCS7A01G354300 chr4A 587246957 587247669 712 False 939.000000 939 90.4900 1 712 1 chr4A.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 892 0.244178 TGCAGCGTTACCGTGTGATA 59.756 50.0 0.0 0.0 36.15 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 1886 0.03392 CAGGAAAAAGTTGGGCTGCC 59.966 55.0 11.05 11.05 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 1.315257 CCCCAAGCATGTAAAGCGCT 61.315 55.000 2.64 2.64 37.68 5.92
162 163 2.617274 GCGTTGGTGAACTCCTGCC 61.617 63.158 0.00 0.00 0.00 4.85
429 454 3.012722 CTAGTTTGGGGGCGGGGA 61.013 66.667 0.00 0.00 0.00 4.81
455 483 1.452145 GCTGGCGGGAGTGTTTTTGA 61.452 55.000 0.00 0.00 0.00 2.69
456 484 1.028905 CTGGCGGGAGTGTTTTTGAA 58.971 50.000 0.00 0.00 0.00 2.69
592 625 3.792053 GAATGAGTCGCCCGCGGAT 62.792 63.158 30.73 7.15 40.25 4.18
631 664 1.302383 ATTTGAATCGGCGCGTTGGA 61.302 50.000 8.43 2.80 0.00 3.53
672 705 0.319211 ATCCAAACGAACGTGAGCGA 60.319 50.000 11.85 0.00 42.00 4.93
707 740 4.550831 CGCCACATTAGAATTGCTCTAACG 60.551 45.833 0.00 0.00 46.96 3.18
708 741 4.332819 GCCACATTAGAATTGCTCTAACGT 59.667 41.667 0.00 0.00 46.96 3.99
709 742 5.522460 GCCACATTAGAATTGCTCTAACGTA 59.478 40.000 0.00 0.00 46.96 3.57
710 743 6.509677 GCCACATTAGAATTGCTCTAACGTAC 60.510 42.308 0.00 0.00 46.96 3.67
711 744 6.757010 CCACATTAGAATTGCTCTAACGTACT 59.243 38.462 0.00 0.00 46.96 2.73
712 745 7.043325 CCACATTAGAATTGCTCTAACGTACTC 60.043 40.741 0.00 0.00 46.96 2.59
713 746 6.691818 ACATTAGAATTGCTCTAACGTACTCG 59.308 38.462 0.00 0.00 46.96 4.18
714 747 5.808042 TAGAATTGCTCTAACGTACTCGT 57.192 39.130 0.00 0.00 42.93 4.18
715 748 6.908870 TAGAATTGCTCTAACGTACTCGTA 57.091 37.500 0.00 0.00 41.50 3.43
716 749 6.709643 TAGAATTGCTCTAACGTACTCGTAC 58.290 40.000 0.00 0.00 41.50 3.67
717 750 6.313658 TAGAATTGCTCTAACGTACTCGTACA 59.686 38.462 7.86 0.00 41.50 2.90
718 751 7.148423 TAGAATTGCTCTAACGTACTCGTACAA 60.148 37.037 7.86 0.00 41.50 2.41
725 758 2.688997 CGTACTCGTACAAAATGCCG 57.311 50.000 7.86 0.00 35.87 5.69
726 759 1.266696 CGTACTCGTACAAAATGCCGC 60.267 52.381 7.86 0.00 35.87 6.53
727 760 1.997606 GTACTCGTACAAAATGCCGCT 59.002 47.619 2.49 0.00 36.15 5.52
728 761 0.796312 ACTCGTACAAAATGCCGCTG 59.204 50.000 0.00 0.00 0.00 5.18
729 762 1.075542 CTCGTACAAAATGCCGCTGA 58.924 50.000 0.00 0.00 0.00 4.26
730 763 1.061131 CTCGTACAAAATGCCGCTGAG 59.939 52.381 0.00 0.00 0.00 3.35
731 764 1.075542 CGTACAAAATGCCGCTGAGA 58.924 50.000 0.00 0.00 0.00 3.27
732 765 1.463056 CGTACAAAATGCCGCTGAGAA 59.537 47.619 0.00 0.00 0.00 2.87
733 766 2.095853 CGTACAAAATGCCGCTGAGAAT 59.904 45.455 0.00 0.00 0.00 2.40
734 767 3.426159 CGTACAAAATGCCGCTGAGAATT 60.426 43.478 0.00 0.00 0.00 2.17
735 768 3.665745 ACAAAATGCCGCTGAGAATTT 57.334 38.095 0.00 0.00 0.00 1.82
736 769 3.578688 ACAAAATGCCGCTGAGAATTTC 58.421 40.909 0.00 0.00 0.00 2.17
737 770 2.925563 CAAAATGCCGCTGAGAATTTCC 59.074 45.455 0.00 0.00 0.00 3.13
738 771 0.734889 AATGCCGCTGAGAATTTCCG 59.265 50.000 0.00 0.00 0.00 4.30
742 775 1.438651 CCGCTGAGAATTTCCGACAA 58.561 50.000 0.00 0.00 0.00 3.18
749 782 5.562696 GCTGAGAATTTCCGACAAACATCAA 60.563 40.000 0.00 0.00 0.00 2.57
758 791 3.996363 CCGACAAACATCAACTGAGATCA 59.004 43.478 0.00 0.00 0.00 2.92
760 793 5.446875 CCGACAAACATCAACTGAGATCATG 60.447 44.000 0.00 0.00 0.00 3.07
768 801 5.603170 TCAACTGAGATCATGAGCACATA 57.397 39.130 14.38 0.00 35.09 2.29
777 810 4.292977 TCATGAGCACATACTCGTACAG 57.707 45.455 0.00 0.00 39.68 2.74
778 811 3.694566 TCATGAGCACATACTCGTACAGT 59.305 43.478 0.00 0.00 39.68 3.55
779 812 4.879545 TCATGAGCACATACTCGTACAGTA 59.120 41.667 0.00 7.37 42.09 2.74
780 813 4.611310 TGAGCACATACTCGTACAGTAC 57.389 45.455 0.00 0.00 40.60 2.73
781 814 4.004982 TGAGCACATACTCGTACAGTACA 58.995 43.478 11.37 0.00 40.60 2.90
800 833 0.519961 AAAATACGTGACGGCCAAGC 59.480 50.000 10.66 0.00 0.00 4.01
825 858 1.445582 AGAAACTTCTACGCCCGCG 60.446 57.895 7.69 7.69 46.03 6.46
842 889 2.549282 GTGCAGCGTTACCGTGTG 59.451 61.111 0.00 0.00 36.15 3.82
845 892 0.244178 TGCAGCGTTACCGTGTGATA 59.756 50.000 0.00 0.00 36.15 2.15
849 896 1.067425 AGCGTTACCGTGTGATAGCAA 60.067 47.619 0.00 0.00 36.15 3.91
851 898 2.222729 GCGTTACCGTGTGATAGCAAAG 60.223 50.000 0.00 0.00 36.15 2.77
864 911 2.485795 GCAAAGCAACACCACCCGA 61.486 57.895 0.00 0.00 0.00 5.14
865 912 1.358759 CAAAGCAACACCACCCGAC 59.641 57.895 0.00 0.00 0.00 4.79
866 913 1.077357 AAAGCAACACCACCCGACA 60.077 52.632 0.00 0.00 0.00 4.35
869 920 3.645975 CAACACCACCCGACACGC 61.646 66.667 0.00 0.00 0.00 5.34
899 950 3.461773 GCTGGGCCAGTCGCTAGA 61.462 66.667 32.80 0.00 37.74 2.43
954 1006 4.622456 CGCCAACGCCACCACAAC 62.622 66.667 0.00 0.00 0.00 3.32
955 1007 4.279043 GCCAACGCCACCACAACC 62.279 66.667 0.00 0.00 0.00 3.77
956 1008 2.830827 CCAACGCCACCACAACCA 60.831 61.111 0.00 0.00 0.00 3.67
958 1011 1.226831 CAACGCCACCACAACCAAC 60.227 57.895 0.00 0.00 0.00 3.77
959 1012 2.419739 AACGCCACCACAACCAACC 61.420 57.895 0.00 0.00 0.00 3.77
964 1017 4.906537 ACCACAACCAACCCCCGC 62.907 66.667 0.00 0.00 0.00 6.13
1605 1673 4.847444 GCGGAGGAGGAAGCCTGC 62.847 72.222 0.00 0.00 42.52 4.85
1608 1676 1.992277 GGAGGAGGAAGCCTGCAGA 60.992 63.158 17.39 0.00 44.71 4.26
1696 1764 3.663815 GAGGAGGCGGAGGTGAGGA 62.664 68.421 0.00 0.00 0.00 3.71
1722 1790 1.280133 CTGAGCAACTTCAGGATCCCA 59.720 52.381 8.55 0.00 40.69 4.37
1803 1871 3.810896 GCCGTCCGGTGATTTGCC 61.811 66.667 7.66 0.00 37.65 4.52
1814 1882 2.827921 GGTGATTTGCCTTGACCAAGAT 59.172 45.455 11.06 0.00 40.79 2.40
1815 1883 3.367703 GGTGATTTGCCTTGACCAAGATG 60.368 47.826 11.06 0.00 40.79 2.90
1816 1884 2.827322 TGATTTGCCTTGACCAAGATGG 59.173 45.455 11.06 0.00 45.02 3.51
1817 1885 2.673775 TTTGCCTTGACCAAGATGGA 57.326 45.000 11.06 0.00 40.96 3.41
1818 1886 2.205022 TTGCCTTGACCAAGATGGAG 57.795 50.000 11.06 0.00 40.96 3.86
1819 1887 0.329261 TGCCTTGACCAAGATGGAGG 59.671 55.000 11.06 0.94 40.96 4.30
1820 1888 1.034292 GCCTTGACCAAGATGGAGGC 61.034 60.000 11.06 10.70 44.46 4.70
1821 1889 0.329261 CCTTGACCAAGATGGAGGCA 59.671 55.000 11.06 0.00 40.96 4.75
1827 1895 1.000521 CAAGATGGAGGCAGCCCAA 60.001 57.895 8.22 0.00 37.22 4.12
1834 1902 0.318441 GGAGGCAGCCCAACTTTTTC 59.682 55.000 8.22 0.00 0.00 2.29
1835 1903 0.318441 GAGGCAGCCCAACTTTTTCC 59.682 55.000 8.22 0.00 0.00 3.13
1844 1918 0.597377 CAACTTTTTCCTGCCGTGCC 60.597 55.000 0.00 0.00 0.00 5.01
1939 2013 3.181543 GCTTGCGTTAGTTTAGTCACGAG 60.182 47.826 0.00 0.00 34.49 4.18
1957 2031 8.656849 AGTCACGAGAATGTAAAATGTATTCAC 58.343 33.333 0.00 0.00 34.18 3.18
1959 2033 8.994170 TCACGAGAATGTAAAATGTATTCACAA 58.006 29.630 0.00 0.00 38.42 3.33
1960 2034 9.051027 CACGAGAATGTAAAATGTATTCACAAC 57.949 33.333 0.00 0.00 38.42 3.32
1965 2039 9.559958 GAATGTAAAATGTATTCACAACTCAGG 57.440 33.333 0.00 0.00 38.42 3.86
1972 2046 1.948104 TTCACAACTCAGGTTCACGG 58.052 50.000 0.00 0.00 32.73 4.94
1973 2047 0.531974 TCACAACTCAGGTTCACGGC 60.532 55.000 0.00 0.00 32.73 5.68
1978 2052 2.359850 TCAGGTTCACGGCCATGC 60.360 61.111 2.24 0.00 0.00 4.06
1979 2053 3.443045 CAGGTTCACGGCCATGCC 61.443 66.667 2.24 0.00 46.75 4.40
2002 2116 7.041916 TGCCTCAAAATGAAATGTGAAAATGTC 60.042 33.333 0.00 0.00 0.00 3.06
2077 2204 3.842820 GCTTTGAAGCCAAGAATTCTCC 58.157 45.455 8.78 0.61 46.20 3.71
2086 2213 4.823989 AGCCAAGAATTCTCCCATAATTCG 59.176 41.667 8.78 0.00 44.44 3.34
2106 2233 5.281693 TCGCTGTGAACTTTTATCATGTG 57.718 39.130 0.00 0.00 0.00 3.21
2111 2238 5.984627 TGTGAACTTTTATCATGTGTGACG 58.015 37.500 0.00 0.00 37.14 4.35
2121 2248 1.386748 CATGTGTGACGTGACGTGATC 59.613 52.381 18.09 5.55 41.37 2.92
2126 2253 1.226323 GACGTGACGTGATCGGGAG 60.226 63.158 18.09 0.00 41.37 4.30
2136 2263 2.361119 CGTGATCGGGAGGAACAATCTA 59.639 50.000 0.00 0.00 0.00 1.98
2142 2269 2.483889 CGGGAGGAACAATCTAAGAGCC 60.484 54.545 0.00 0.00 0.00 4.70
2166 2293 1.751351 TGCCGTTGATTTGTGGAAACA 59.249 42.857 0.00 0.00 38.70 2.83
2170 2297 3.181480 CCGTTGATTTGTGGAAACAAGGT 60.181 43.478 0.00 0.00 46.06 3.50
2174 2301 3.252215 TGATTTGTGGAAACAAGGTAGCG 59.748 43.478 0.00 0.00 46.06 4.26
2176 2303 0.759959 TGTGGAAACAAGGTAGCGGA 59.240 50.000 0.00 0.00 46.06 5.54
2207 2344 3.357079 CACCAGCTGCGTTGGTCC 61.357 66.667 8.66 0.00 43.44 4.46
2210 2347 2.664851 CAGCTGCGTTGGTCCGAA 60.665 61.111 0.00 0.00 0.00 4.30
2211 2348 2.665185 AGCTGCGTTGGTCCGAAC 60.665 61.111 0.00 0.00 0.00 3.95
2263 2425 1.738099 CCACAAGGCTCTCGTTCCG 60.738 63.158 0.00 0.00 0.00 4.30
2266 2428 1.289066 CAAGGCTCTCGTTCCGTGA 59.711 57.895 0.00 0.00 34.43 4.35
2267 2429 0.734253 CAAGGCTCTCGTTCCGTGAG 60.734 60.000 10.40 10.40 46.02 3.51
2268 2430 1.179814 AAGGCTCTCGTTCCGTGAGT 61.180 55.000 14.67 0.00 45.36 3.41
2323 2491 4.470170 CGACGTGCGACCGATGGA 62.470 66.667 0.00 0.00 44.57 3.41
2326 2494 1.752501 GACGTGCGACCGATGGAATG 61.753 60.000 0.00 0.00 0.00 2.67
2327 2495 2.525248 CGTGCGACCGATGGAATGG 61.525 63.158 0.00 0.00 0.00 3.16
2332 2500 1.095228 CGACCGATGGAATGGTTGGG 61.095 60.000 0.00 0.00 38.99 4.12
2339 2507 3.244044 CGATGGAATGGTTGGGTTTGTTT 60.244 43.478 0.00 0.00 0.00 2.83
2354 2522 5.234116 GGGTTTGTTTATTTGTTGCTGAGTG 59.766 40.000 0.00 0.00 0.00 3.51
2355 2523 6.039616 GGTTTGTTTATTTGTTGCTGAGTGA 58.960 36.000 0.00 0.00 0.00 3.41
2411 2581 3.119245 GGAGATTAGGCACGTGAACTGTA 60.119 47.826 22.23 9.38 0.00 2.74
2412 2582 4.491676 GAGATTAGGCACGTGAACTGTAA 58.508 43.478 22.23 8.85 0.00 2.41
2437 2608 2.347292 GCACGCAACGGATAGTAATTCG 60.347 50.000 0.00 0.00 40.18 3.34
2441 2612 2.864343 GCAACGGATAGTAATTCGCTGT 59.136 45.455 0.00 0.00 37.65 4.40
2453 2624 1.961793 TTCGCTGTTTGCTTGTAGGT 58.038 45.000 0.00 0.00 40.11 3.08
2469 2640 1.077716 GGTGGCCGCCTATTTGACT 60.078 57.895 28.79 0.00 0.00 3.41
2472 2643 2.534903 GGCCGCCTATTTGACTCGC 61.535 63.158 0.71 0.00 0.00 5.03
2503 2674 3.855689 TGGTACAGGCGTAAACTAGAC 57.144 47.619 0.00 0.00 0.00 2.59
2504 2675 2.162208 TGGTACAGGCGTAAACTAGACG 59.838 50.000 0.00 0.00 43.19 4.18
2505 2676 2.420022 GGTACAGGCGTAAACTAGACGA 59.580 50.000 6.64 0.00 42.98 4.20
2506 2677 3.065925 GGTACAGGCGTAAACTAGACGAT 59.934 47.826 6.64 0.00 42.98 3.73
2507 2678 3.146618 ACAGGCGTAAACTAGACGATG 57.853 47.619 6.64 6.60 42.98 3.84
2508 2679 2.490903 ACAGGCGTAAACTAGACGATGT 59.509 45.455 6.64 7.13 42.98 3.06
2509 2680 3.106672 CAGGCGTAAACTAGACGATGTC 58.893 50.000 6.64 0.00 42.98 3.06
2510 2681 3.015327 AGGCGTAAACTAGACGATGTCT 58.985 45.455 6.64 4.70 45.54 3.41
2511 2682 3.106672 GGCGTAAACTAGACGATGTCTG 58.893 50.000 9.63 2.96 43.30 3.51
2512 2683 3.427233 GGCGTAAACTAGACGATGTCTGT 60.427 47.826 9.63 3.53 43.30 3.41
2513 2684 3.542704 GCGTAAACTAGACGATGTCTGTG 59.457 47.826 9.63 5.25 43.30 3.66
2514 2685 4.096311 CGTAAACTAGACGATGTCTGTGG 58.904 47.826 9.63 3.06 43.30 4.17
2515 2686 3.594603 AAACTAGACGATGTCTGTGGG 57.405 47.619 9.63 0.90 43.30 4.61
2516 2687 2.509166 ACTAGACGATGTCTGTGGGA 57.491 50.000 9.63 0.00 43.30 4.37
2517 2688 2.370349 ACTAGACGATGTCTGTGGGAG 58.630 52.381 9.63 1.51 43.30 4.30
2518 2689 2.291024 ACTAGACGATGTCTGTGGGAGT 60.291 50.000 9.63 2.11 43.30 3.85
2519 2690 1.178276 AGACGATGTCTGTGGGAGTC 58.822 55.000 0.00 0.00 41.76 3.36
2520 2691 0.173708 GACGATGTCTGTGGGAGTCC 59.826 60.000 0.00 0.00 0.00 3.85
2521 2692 1.139734 CGATGTCTGTGGGAGTCCG 59.860 63.158 2.26 0.00 35.24 4.79
2522 2693 1.517832 GATGTCTGTGGGAGTCCGG 59.482 63.158 2.26 0.00 35.24 5.14
2523 2694 2.579684 GATGTCTGTGGGAGTCCGGC 62.580 65.000 2.26 0.00 35.24 6.13
2524 2695 3.311110 GTCTGTGGGAGTCCGGCA 61.311 66.667 2.26 3.62 35.24 5.69
2525 2696 2.997315 TCTGTGGGAGTCCGGCAG 60.997 66.667 19.72 19.72 38.87 4.85
2526 2697 3.314331 CTGTGGGAGTCCGGCAGT 61.314 66.667 18.29 0.00 35.41 4.40
2527 2698 3.302347 CTGTGGGAGTCCGGCAGTC 62.302 68.421 18.29 0.00 35.41 3.51
2528 2699 4.083862 GTGGGAGTCCGGCAGTCC 62.084 72.222 15.62 15.62 43.49 3.85
2538 2709 4.088421 GGCAGTCCGTCACGTATG 57.912 61.111 0.00 0.00 0.00 2.39
2539 2710 2.165301 GGCAGTCCGTCACGTATGC 61.165 63.158 9.38 9.38 0.00 3.14
2540 2711 2.505498 GCAGTCCGTCACGTATGCG 61.505 63.158 0.19 0.19 44.93 4.73
2541 2712 2.202570 AGTCCGTCACGTATGCGC 60.203 61.111 0.00 0.00 42.83 6.09
2542 2713 3.252484 GTCCGTCACGTATGCGCC 61.252 66.667 4.18 0.00 42.83 6.53
2543 2714 3.445687 TCCGTCACGTATGCGCCT 61.446 61.111 4.18 0.00 42.83 5.52
2544 2715 2.954868 CCGTCACGTATGCGCCTC 60.955 66.667 4.18 0.00 42.83 4.70
2545 2716 2.202557 CGTCACGTATGCGCCTCA 60.203 61.111 4.18 0.00 42.83 3.86
2546 2717 1.588932 CGTCACGTATGCGCCTCAT 60.589 57.895 4.18 0.00 42.83 2.90
2547 2718 1.145759 CGTCACGTATGCGCCTCATT 61.146 55.000 4.18 0.00 42.83 2.57
2548 2719 0.301687 GTCACGTATGCGCCTCATTG 59.698 55.000 4.18 0.00 42.83 2.82
2549 2720 0.108377 TCACGTATGCGCCTCATTGT 60.108 50.000 4.18 0.00 42.83 2.71
2550 2721 0.301687 CACGTATGCGCCTCATTGTC 59.698 55.000 4.18 0.00 42.83 3.18
2551 2722 0.108377 ACGTATGCGCCTCATTGTCA 60.108 50.000 4.18 0.00 42.83 3.58
2552 2723 1.220529 CGTATGCGCCTCATTGTCAT 58.779 50.000 4.18 0.00 36.63 3.06
2553 2724 1.070376 CGTATGCGCCTCATTGTCATG 60.070 52.381 4.18 0.00 36.63 3.07
2554 2725 1.942657 GTATGCGCCTCATTGTCATGT 59.057 47.619 4.18 0.00 36.63 3.21
2555 2726 1.019673 ATGCGCCTCATTGTCATGTC 58.980 50.000 4.18 0.00 29.16 3.06
2556 2727 0.036105 TGCGCCTCATTGTCATGTCT 60.036 50.000 4.18 0.00 0.00 3.41
2557 2728 0.654683 GCGCCTCATTGTCATGTCTC 59.345 55.000 0.00 0.00 0.00 3.36
2558 2729 2.008543 GCGCCTCATTGTCATGTCTCA 61.009 52.381 0.00 0.00 0.00 3.27
2559 2730 1.662629 CGCCTCATTGTCATGTCTCAC 59.337 52.381 0.00 0.00 0.00 3.51
2560 2731 2.012673 GCCTCATTGTCATGTCTCACC 58.987 52.381 0.00 0.00 0.00 4.02
2561 2732 2.636830 CCTCATTGTCATGTCTCACCC 58.363 52.381 0.00 0.00 0.00 4.61
2562 2733 2.026915 CCTCATTGTCATGTCTCACCCA 60.027 50.000 0.00 0.00 0.00 4.51
2563 2734 3.559811 CCTCATTGTCATGTCTCACCCAA 60.560 47.826 0.00 0.00 0.00 4.12
2564 2735 4.074259 CTCATTGTCATGTCTCACCCAAA 58.926 43.478 0.00 0.00 0.00 3.28
2565 2736 4.468713 TCATTGTCATGTCTCACCCAAAA 58.531 39.130 0.00 0.00 0.00 2.44
2566 2737 4.892345 TCATTGTCATGTCTCACCCAAAAA 59.108 37.500 0.00 0.00 0.00 1.94
2567 2738 4.647424 TTGTCATGTCTCACCCAAAAAC 57.353 40.909 0.00 0.00 0.00 2.43
2568 2739 2.955660 TGTCATGTCTCACCCAAAAACC 59.044 45.455 0.00 0.00 0.00 3.27
2569 2740 3.222603 GTCATGTCTCACCCAAAAACCT 58.777 45.455 0.00 0.00 0.00 3.50
2570 2741 3.253432 GTCATGTCTCACCCAAAAACCTC 59.747 47.826 0.00 0.00 0.00 3.85
2571 2742 3.138283 TCATGTCTCACCCAAAAACCTCT 59.862 43.478 0.00 0.00 0.00 3.69
2572 2743 3.662759 TGTCTCACCCAAAAACCTCTT 57.337 42.857 0.00 0.00 0.00 2.85
2573 2744 4.781775 TGTCTCACCCAAAAACCTCTTA 57.218 40.909 0.00 0.00 0.00 2.10
2574 2745 4.714632 TGTCTCACCCAAAAACCTCTTAG 58.285 43.478 0.00 0.00 0.00 2.18
2575 2746 3.502595 GTCTCACCCAAAAACCTCTTAGC 59.497 47.826 0.00 0.00 0.00 3.09
2576 2747 2.820197 CTCACCCAAAAACCTCTTAGCC 59.180 50.000 0.00 0.00 0.00 3.93
2577 2748 2.445525 TCACCCAAAAACCTCTTAGCCT 59.554 45.455 0.00 0.00 0.00 4.58
2578 2749 2.820197 CACCCAAAAACCTCTTAGCCTC 59.180 50.000 0.00 0.00 0.00 4.70
2579 2750 2.445525 ACCCAAAAACCTCTTAGCCTCA 59.554 45.455 0.00 0.00 0.00 3.86
2580 2751 3.084786 CCCAAAAACCTCTTAGCCTCAG 58.915 50.000 0.00 0.00 0.00 3.35
2581 2752 3.244911 CCCAAAAACCTCTTAGCCTCAGA 60.245 47.826 0.00 0.00 0.00 3.27
2582 2753 4.398319 CCAAAAACCTCTTAGCCTCAGAA 58.602 43.478 0.00 0.00 0.00 3.02
2583 2754 4.827284 CCAAAAACCTCTTAGCCTCAGAAA 59.173 41.667 0.00 0.00 0.00 2.52
2584 2755 5.278512 CCAAAAACCTCTTAGCCTCAGAAAC 60.279 44.000 0.00 0.00 0.00 2.78
2585 2756 3.704800 AACCTCTTAGCCTCAGAAACC 57.295 47.619 0.00 0.00 0.00 3.27
2586 2757 1.909986 ACCTCTTAGCCTCAGAAACCC 59.090 52.381 0.00 0.00 0.00 4.11
2587 2758 2.192263 CCTCTTAGCCTCAGAAACCCT 58.808 52.381 0.00 0.00 0.00 4.34
2588 2759 2.169561 CCTCTTAGCCTCAGAAACCCTC 59.830 54.545 0.00 0.00 0.00 4.30
2589 2760 3.103742 CTCTTAGCCTCAGAAACCCTCT 58.896 50.000 0.00 0.00 33.23 3.69
2590 2761 3.517500 CTCTTAGCCTCAGAAACCCTCTT 59.482 47.826 0.00 0.00 29.07 2.85
2591 2762 3.515901 TCTTAGCCTCAGAAACCCTCTTC 59.484 47.826 0.00 0.00 29.07 2.87
2592 2763 0.610687 AGCCTCAGAAACCCTCTTCG 59.389 55.000 0.00 0.00 29.07 3.79
2593 2764 0.321996 GCCTCAGAAACCCTCTTCGT 59.678 55.000 0.00 0.00 29.07 3.85
2594 2765 1.941668 GCCTCAGAAACCCTCTTCGTG 60.942 57.143 0.00 0.00 29.07 4.35
2595 2766 1.344763 CCTCAGAAACCCTCTTCGTGT 59.655 52.381 0.00 0.00 29.07 4.49
2596 2767 2.561419 CCTCAGAAACCCTCTTCGTGTA 59.439 50.000 0.00 0.00 29.07 2.90
2597 2768 3.006537 CCTCAGAAACCCTCTTCGTGTAA 59.993 47.826 0.00 0.00 29.07 2.41
2598 2769 4.502604 CCTCAGAAACCCTCTTCGTGTAAA 60.503 45.833 0.00 0.00 29.07 2.01
2599 2770 4.628074 TCAGAAACCCTCTTCGTGTAAAG 58.372 43.478 0.00 0.00 29.07 1.85
2600 2771 3.186613 CAGAAACCCTCTTCGTGTAAAGC 59.813 47.826 0.00 0.00 29.07 3.51
2601 2772 1.792006 AACCCTCTTCGTGTAAAGCG 58.208 50.000 0.00 0.00 0.00 4.68
2602 2773 0.037605 ACCCTCTTCGTGTAAAGCGG 60.038 55.000 0.00 0.00 32.08 5.52
2603 2774 0.037605 CCCTCTTCGTGTAAAGCGGT 60.038 55.000 0.00 0.00 30.61 5.68
2604 2775 1.607251 CCCTCTTCGTGTAAAGCGGTT 60.607 52.381 0.00 0.00 30.61 4.44
2605 2776 2.353011 CCCTCTTCGTGTAAAGCGGTTA 60.353 50.000 0.00 0.00 30.61 2.85
2606 2777 2.665052 CCTCTTCGTGTAAAGCGGTTAC 59.335 50.000 0.00 6.43 42.24 2.50
2607 2778 2.665052 CTCTTCGTGTAAAGCGGTTACC 59.335 50.000 0.00 0.00 41.35 2.85
2620 2791 2.546778 CGGTTACCGCACATTCATACT 58.453 47.619 11.93 0.00 41.17 2.12
2621 2792 2.284150 CGGTTACCGCACATTCATACTG 59.716 50.000 11.93 0.00 41.17 2.74
2622 2793 3.527533 GGTTACCGCACATTCATACTGA 58.472 45.455 0.00 0.00 0.00 3.41
2623 2794 4.127171 GGTTACCGCACATTCATACTGAT 58.873 43.478 0.00 0.00 0.00 2.90
2624 2795 4.211374 GGTTACCGCACATTCATACTGATC 59.789 45.833 0.00 0.00 0.00 2.92
2625 2796 3.541996 ACCGCACATTCATACTGATCA 57.458 42.857 0.00 0.00 0.00 2.92
2626 2797 3.461061 ACCGCACATTCATACTGATCAG 58.539 45.455 21.37 21.37 0.00 2.90
2627 2798 3.118629 ACCGCACATTCATACTGATCAGT 60.119 43.478 30.11 30.11 45.02 3.41
2628 2799 3.873361 CCGCACATTCATACTGATCAGTT 59.127 43.478 32.14 17.36 42.54 3.16
2629 2800 4.025396 CCGCACATTCATACTGATCAGTTC 60.025 45.833 32.14 10.14 42.54 3.01
2630 2801 4.567959 CGCACATTCATACTGATCAGTTCA 59.432 41.667 32.14 16.87 42.54 3.18
2639 2810 0.171231 TGATCAGTTCAGAGCGGACG 59.829 55.000 0.00 0.00 0.00 4.79
2640 2811 0.171455 GATCAGTTCAGAGCGGACGT 59.829 55.000 0.00 0.00 0.00 4.34
2641 2812 0.109086 ATCAGTTCAGAGCGGACGTG 60.109 55.000 0.00 0.00 0.00 4.49
2642 2813 1.170290 TCAGTTCAGAGCGGACGTGA 61.170 55.000 0.00 0.00 0.00 4.35
2643 2814 1.004277 CAGTTCAGAGCGGACGTGAC 61.004 60.000 0.00 0.00 0.00 3.67
2644 2815 1.173444 AGTTCAGAGCGGACGTGACT 61.173 55.000 0.00 0.00 0.00 3.41
2645 2816 0.729816 GTTCAGAGCGGACGTGACTC 60.730 60.000 0.00 0.00 0.00 3.36
2646 2817 1.863662 TTCAGAGCGGACGTGACTCC 61.864 60.000 0.00 0.00 0.00 3.85
2647 2818 2.282251 AGAGCGGACGTGACTCCA 60.282 61.111 0.00 0.00 0.00 3.86
2648 2819 2.126424 GAGCGGACGTGACTCCAC 60.126 66.667 0.00 0.00 39.86 4.02
2649 2820 2.910479 AGCGGACGTGACTCCACA 60.910 61.111 0.00 0.00 43.34 4.17
2650 2821 2.028484 GCGGACGTGACTCCACAA 59.972 61.111 0.00 0.00 43.34 3.33
2651 2822 1.374252 GCGGACGTGACTCCACAAT 60.374 57.895 0.00 0.00 43.34 2.71
2652 2823 1.626654 GCGGACGTGACTCCACAATG 61.627 60.000 0.00 0.00 43.34 2.82
2653 2824 0.319555 CGGACGTGACTCCACAATGT 60.320 55.000 0.00 0.00 43.34 2.71
2654 2825 1.872237 CGGACGTGACTCCACAATGTT 60.872 52.381 0.00 0.00 43.34 2.71
2655 2826 1.531149 GGACGTGACTCCACAATGTTG 59.469 52.381 0.00 0.00 43.34 3.33
2656 2827 1.531149 GACGTGACTCCACAATGTTGG 59.469 52.381 0.00 0.00 43.34 3.77
2657 2828 1.134220 ACGTGACTCCACAATGTTGGT 60.134 47.619 0.00 0.00 43.34 3.67
2658 2829 1.264020 CGTGACTCCACAATGTTGGTG 59.736 52.381 0.00 0.00 43.34 4.17
2659 2830 2.297701 GTGACTCCACAATGTTGGTGT 58.702 47.619 8.51 8.51 44.30 4.16
2661 2832 1.531149 GACTCCACAATGTTGGTGTCG 59.469 52.381 15.57 0.00 45.44 4.35
2662 2833 0.874390 CTCCACAATGTTGGTGTCGG 59.126 55.000 0.00 0.00 37.93 4.79
2663 2834 0.181587 TCCACAATGTTGGTGTCGGT 59.818 50.000 0.00 0.00 37.93 4.69
2664 2835 1.028905 CCACAATGTTGGTGTCGGTT 58.971 50.000 0.00 0.00 34.46 4.44
2665 2836 2.158798 TCCACAATGTTGGTGTCGGTTA 60.159 45.455 0.00 0.00 37.93 2.85
2666 2837 2.225491 CCACAATGTTGGTGTCGGTTAG 59.775 50.000 0.00 0.00 34.46 2.34
2667 2838 3.135225 CACAATGTTGGTGTCGGTTAGA 58.865 45.455 0.00 0.00 0.00 2.10
2668 2839 3.186409 CACAATGTTGGTGTCGGTTAGAG 59.814 47.826 0.00 0.00 0.00 2.43
2669 2840 2.094762 ATGTTGGTGTCGGTTAGAGC 57.905 50.000 0.00 0.00 0.00 4.09
2670 2841 0.753867 TGTTGGTGTCGGTTAGAGCA 59.246 50.000 0.00 0.00 0.00 4.26
2671 2842 1.139256 TGTTGGTGTCGGTTAGAGCAA 59.861 47.619 0.00 0.00 36.60 3.91
2672 2843 1.873698 TTGGTGTCGGTTAGAGCAAC 58.126 50.000 0.00 0.00 34.27 4.17
2673 2844 0.319211 TGGTGTCGGTTAGAGCAACG 60.319 55.000 0.00 0.00 38.09 4.10
2674 2845 0.038892 GGTGTCGGTTAGAGCAACGA 60.039 55.000 0.00 0.00 38.09 3.85
2675 2846 1.337821 GTGTCGGTTAGAGCAACGAG 58.662 55.000 0.00 0.00 38.09 4.18
2676 2847 0.242825 TGTCGGTTAGAGCAACGAGG 59.757 55.000 0.00 0.00 38.09 4.63
2677 2848 0.243095 GTCGGTTAGAGCAACGAGGT 59.757 55.000 0.00 0.00 38.09 3.85
2678 2849 0.524862 TCGGTTAGAGCAACGAGGTC 59.475 55.000 0.00 0.00 45.07 3.85
2683 2854 4.094684 GAGCAACGAGGTCGGATG 57.905 61.111 4.13 3.94 44.95 3.51
2684 2855 1.511305 GAGCAACGAGGTCGGATGA 59.489 57.895 4.13 0.00 44.95 2.92
2685 2856 0.108804 GAGCAACGAGGTCGGATGAA 60.109 55.000 4.13 0.00 44.95 2.57
2686 2857 0.389948 AGCAACGAGGTCGGATGAAC 60.390 55.000 4.13 0.00 44.95 3.18
2687 2858 1.683790 GCAACGAGGTCGGATGAACG 61.684 60.000 4.13 0.00 44.95 3.95
2688 2859 1.076533 CAACGAGGTCGGATGAACGG 61.077 60.000 4.13 0.00 44.95 4.44
2689 2860 2.104331 CGAGGTCGGATGAACGGG 59.896 66.667 0.00 0.00 36.72 5.28
2690 2861 2.202892 GAGGTCGGATGAACGGGC 60.203 66.667 0.00 0.00 36.72 6.13
2691 2862 3.000819 AGGTCGGATGAACGGGCA 61.001 61.111 0.00 0.00 36.72 5.36
2692 2863 2.511600 GGTCGGATGAACGGGCAG 60.512 66.667 0.00 0.00 0.00 4.85
2693 2864 2.511600 GTCGGATGAACGGGCAGG 60.512 66.667 0.00 0.00 0.00 4.85
2694 2865 4.467084 TCGGATGAACGGGCAGGC 62.467 66.667 0.00 0.00 0.00 4.85
2695 2866 4.473520 CGGATGAACGGGCAGGCT 62.474 66.667 0.00 0.00 0.00 4.58
2696 2867 2.044946 GGATGAACGGGCAGGCTT 60.045 61.111 0.00 0.00 0.00 4.35
2697 2868 2.409870 GGATGAACGGGCAGGCTTG 61.410 63.158 0.00 0.00 0.00 4.01
2727 2898 3.446570 GCAAGCCCGAGCAGCATT 61.447 61.111 1.66 0.00 43.56 3.56
2728 2899 2.114670 GCAAGCCCGAGCAGCATTA 61.115 57.895 1.66 0.00 43.56 1.90
2729 2900 1.656818 GCAAGCCCGAGCAGCATTAA 61.657 55.000 1.66 0.00 43.56 1.40
2730 2901 0.099436 CAAGCCCGAGCAGCATTAAC 59.901 55.000 0.00 0.00 43.56 2.01
2731 2902 1.369091 AAGCCCGAGCAGCATTAACG 61.369 55.000 0.00 0.00 43.56 3.18
2732 2903 1.813753 GCCCGAGCAGCATTAACGA 60.814 57.895 0.00 0.00 39.53 3.85
2733 2904 1.366111 GCCCGAGCAGCATTAACGAA 61.366 55.000 0.00 0.00 39.53 3.85
2734 2905 0.652592 CCCGAGCAGCATTAACGAAG 59.347 55.000 0.00 0.00 0.00 3.79
2736 2907 1.324736 CCGAGCAGCATTAACGAAGTC 59.675 52.381 0.00 0.00 45.00 3.01
2737 2908 1.324736 CGAGCAGCATTAACGAAGTCC 59.675 52.381 0.00 0.00 45.00 3.85
2738 2909 1.324736 GAGCAGCATTAACGAAGTCCG 59.675 52.381 0.00 0.00 45.00 4.79
2760 2931 3.833645 CGCGCTGGTAGGCCTGTA 61.834 66.667 17.99 0.00 36.26 2.74
2761 2932 2.202892 GCGCTGGTAGGCCTGTAC 60.203 66.667 17.99 6.26 36.26 2.90
2762 2933 2.499685 CGCTGGTAGGCCTGTACC 59.500 66.667 17.99 17.28 42.68 3.34
2763 2934 2.908796 GCTGGTAGGCCTGTACCC 59.091 66.667 20.10 12.76 41.79 3.69
2764 2935 3.090219 GCTGGTAGGCCTGTACCCG 62.090 68.421 20.10 15.45 41.79 5.28
2765 2936 1.684734 CTGGTAGGCCTGTACCCGT 60.685 63.158 20.10 0.00 41.79 5.28
2766 2937 1.956629 CTGGTAGGCCTGTACCCGTG 61.957 65.000 20.10 8.27 41.79 4.94
2767 2938 1.683365 GGTAGGCCTGTACCCGTGA 60.683 63.158 17.99 0.00 37.12 4.35
2768 2939 1.047034 GGTAGGCCTGTACCCGTGAT 61.047 60.000 17.99 0.00 37.12 3.06
2769 2940 0.104304 GTAGGCCTGTACCCGTGATG 59.896 60.000 17.99 0.00 0.00 3.07
2770 2941 1.046472 TAGGCCTGTACCCGTGATGG 61.046 60.000 17.99 0.00 37.55 3.51
2779 2950 4.420143 CCGTGATGGGTCGATGAC 57.580 61.111 0.00 0.00 0.00 3.06
2787 2958 2.588877 GGTCGATGACCGCCATGG 60.589 66.667 7.63 7.63 43.14 3.66
2788 2959 2.499205 GTCGATGACCGCCATGGA 59.501 61.111 18.40 0.00 42.00 3.41
2789 2960 1.592669 GTCGATGACCGCCATGGAG 60.593 63.158 18.40 13.36 40.03 3.86
2790 2961 2.280389 CGATGACCGCCATGGAGG 60.280 66.667 30.93 30.93 42.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 2.263540 GCCGCTGTAACGAGGGAA 59.736 61.111 0.00 0.00 34.06 3.97
379 392 2.435586 TCGACCTCGACCTCGACC 60.436 66.667 5.73 0.00 44.22 4.79
456 484 4.202451 CCACAACCATTTCCCCTCATTTTT 60.202 41.667 0.00 0.00 0.00 1.94
463 492 0.542702 CAGCCACAACCATTTCCCCT 60.543 55.000 0.00 0.00 0.00 4.79
504 533 4.194720 CGCGCGCCTACTCCTCTT 62.195 66.667 27.72 0.00 0.00 2.85
531 564 3.749373 CGTTGACGCGGACACGAC 61.749 66.667 17.92 11.33 44.60 4.34
543 576 0.886938 TTGAGCCGGATTTGCGTTGA 60.887 50.000 5.05 0.00 0.00 3.18
631 664 2.184167 CGTGGACAAAAGTGGCGGT 61.184 57.895 0.00 0.00 31.03 5.68
672 705 1.750193 ATGTGGCGATCCATTTCGTT 58.250 45.000 0.00 0.00 45.62 3.85
707 740 1.997606 AGCGGCATTTTGTACGAGTAC 59.002 47.619 1.45 6.46 36.63 2.73
708 741 1.996898 CAGCGGCATTTTGTACGAGTA 59.003 47.619 1.45 0.00 0.00 2.59
709 742 0.796312 CAGCGGCATTTTGTACGAGT 59.204 50.000 1.45 0.00 0.00 4.18
710 743 1.061131 CTCAGCGGCATTTTGTACGAG 59.939 52.381 1.45 0.00 0.00 4.18
711 744 1.075542 CTCAGCGGCATTTTGTACGA 58.924 50.000 1.45 0.00 0.00 3.43
712 745 1.075542 TCTCAGCGGCATTTTGTACG 58.924 50.000 1.45 0.00 0.00 3.67
713 746 3.764885 ATTCTCAGCGGCATTTTGTAC 57.235 42.857 1.45 0.00 0.00 2.90
714 747 4.380444 GGAAATTCTCAGCGGCATTTTGTA 60.380 41.667 1.45 0.00 0.00 2.41
715 748 3.578688 GAAATTCTCAGCGGCATTTTGT 58.421 40.909 1.45 0.00 0.00 2.83
716 749 2.925563 GGAAATTCTCAGCGGCATTTTG 59.074 45.455 1.45 0.00 0.00 2.44
717 750 2.415893 CGGAAATTCTCAGCGGCATTTT 60.416 45.455 1.45 0.00 0.00 1.82
718 751 1.133025 CGGAAATTCTCAGCGGCATTT 59.867 47.619 1.45 0.00 0.00 2.32
719 752 0.734889 CGGAAATTCTCAGCGGCATT 59.265 50.000 1.45 0.00 0.00 3.56
720 753 0.107703 TCGGAAATTCTCAGCGGCAT 60.108 50.000 1.45 0.00 0.00 4.40
721 754 1.019278 GTCGGAAATTCTCAGCGGCA 61.019 55.000 1.45 0.00 0.00 5.69
722 755 1.019278 TGTCGGAAATTCTCAGCGGC 61.019 55.000 0.00 0.00 0.00 6.53
723 756 1.438651 TTGTCGGAAATTCTCAGCGG 58.561 50.000 0.00 0.00 0.00 5.52
724 757 2.223144 TGTTTGTCGGAAATTCTCAGCG 59.777 45.455 0.00 0.00 0.00 5.18
725 758 3.896648 TGTTTGTCGGAAATTCTCAGC 57.103 42.857 0.00 0.00 0.00 4.26
726 759 5.611796 TGATGTTTGTCGGAAATTCTCAG 57.388 39.130 0.00 0.00 0.00 3.35
727 760 5.530915 AGTTGATGTTTGTCGGAAATTCTCA 59.469 36.000 0.00 0.00 0.00 3.27
728 761 5.853282 CAGTTGATGTTTGTCGGAAATTCTC 59.147 40.000 0.00 0.00 0.00 2.87
729 762 5.530915 TCAGTTGATGTTTGTCGGAAATTCT 59.469 36.000 0.00 0.00 0.00 2.40
730 763 5.757886 TCAGTTGATGTTTGTCGGAAATTC 58.242 37.500 0.00 0.00 0.00 2.17
731 764 5.530915 TCTCAGTTGATGTTTGTCGGAAATT 59.469 36.000 0.00 0.00 0.00 1.82
732 765 5.063204 TCTCAGTTGATGTTTGTCGGAAAT 58.937 37.500 0.00 0.00 0.00 2.17
733 766 4.447290 TCTCAGTTGATGTTTGTCGGAAA 58.553 39.130 0.00 0.00 0.00 3.13
734 767 4.066646 TCTCAGTTGATGTTTGTCGGAA 57.933 40.909 0.00 0.00 0.00 4.30
735 768 3.744238 TCTCAGTTGATGTTTGTCGGA 57.256 42.857 0.00 0.00 0.00 4.55
736 769 3.996363 TGATCTCAGTTGATGTTTGTCGG 59.004 43.478 0.00 0.00 0.00 4.79
737 770 5.349543 TCATGATCTCAGTTGATGTTTGTCG 59.650 40.000 0.00 0.00 0.00 4.35
738 771 6.675002 GCTCATGATCTCAGTTGATGTTTGTC 60.675 42.308 0.00 0.00 0.00 3.18
742 775 4.634883 GTGCTCATGATCTCAGTTGATGTT 59.365 41.667 0.00 0.00 0.00 2.71
749 782 4.261530 CGAGTATGTGCTCATGATCTCAGT 60.262 45.833 11.46 0.00 35.33 3.41
758 791 4.638865 TGTACTGTACGAGTATGTGCTCAT 59.361 41.667 12.87 6.50 39.44 2.90
760 793 4.611310 TGTACTGTACGAGTATGTGCTC 57.389 45.455 12.87 0.00 39.44 4.26
768 801 5.853282 GTCACGTATTTTGTACTGTACGAGT 59.147 40.000 19.10 6.88 41.62 4.18
777 810 2.067766 TGGCCGTCACGTATTTTGTAC 58.932 47.619 0.00 0.00 0.00 2.90
778 811 2.452295 TGGCCGTCACGTATTTTGTA 57.548 45.000 0.00 0.00 0.00 2.41
779 812 1.533731 CTTGGCCGTCACGTATTTTGT 59.466 47.619 0.00 0.00 0.00 2.83
780 813 1.727857 GCTTGGCCGTCACGTATTTTG 60.728 52.381 0.00 0.00 0.00 2.44
781 814 0.519961 GCTTGGCCGTCACGTATTTT 59.480 50.000 0.00 0.00 0.00 1.82
800 833 3.246619 GGCGTAGAAGTTTCTGAGACTG 58.753 50.000 1.18 0.00 38.19 3.51
832 865 2.739913 TGCTTTGCTATCACACGGTAAC 59.260 45.455 0.00 0.00 0.00 2.50
833 866 3.046968 TGCTTTGCTATCACACGGTAA 57.953 42.857 0.00 0.00 0.00 2.85
842 889 1.202348 GGGTGGTGTTGCTTTGCTATC 59.798 52.381 0.00 0.00 0.00 2.08
845 892 2.489275 CGGGTGGTGTTGCTTTGCT 61.489 57.895 0.00 0.00 0.00 3.91
849 896 1.822186 GTGTCGGGTGGTGTTGCTT 60.822 57.895 0.00 0.00 0.00 3.91
851 898 3.645975 CGTGTCGGGTGGTGTTGC 61.646 66.667 0.00 0.00 0.00 4.17
886 937 4.874977 GCGGTCTAGCGACTGGCC 62.875 72.222 5.64 0.00 44.93 5.36
905 956 3.673809 GCGAGGTTTTATATACAGCGGAG 59.326 47.826 0.00 0.00 0.00 4.63
906 957 3.553508 GGCGAGGTTTTATATACAGCGGA 60.554 47.826 0.00 0.00 0.00 5.54
907 958 2.735134 GGCGAGGTTTTATATACAGCGG 59.265 50.000 0.00 0.00 0.00 5.52
908 959 2.735134 GGGCGAGGTTTTATATACAGCG 59.265 50.000 0.00 0.00 0.00 5.18
909 960 2.735134 CGGGCGAGGTTTTATATACAGC 59.265 50.000 0.00 0.00 0.00 4.40
910 961 2.735134 GCGGGCGAGGTTTTATATACAG 59.265 50.000 0.00 0.00 0.00 2.74
913 964 1.337074 CGGCGGGCGAGGTTTTATATA 60.337 52.381 20.10 0.00 0.00 0.86
938 990 4.279043 GGTTGTGGTGGCGTTGGC 62.279 66.667 0.00 0.00 38.90 4.52
941 993 2.419739 GGTTGGTTGTGGTGGCGTT 61.420 57.895 0.00 0.00 0.00 4.84
943 995 3.601685 GGGTTGGTTGTGGTGGCG 61.602 66.667 0.00 0.00 0.00 5.69
944 996 3.230990 GGGGTTGGTTGTGGTGGC 61.231 66.667 0.00 0.00 0.00 5.01
945 997 2.523168 GGGGGTTGGTTGTGGTGG 60.523 66.667 0.00 0.00 0.00 4.61
947 999 4.906537 GCGGGGGTTGGTTGTGGT 62.907 66.667 0.00 0.00 0.00 4.16
998 1066 2.439156 GAGGCTGCCGCTCCATTT 60.439 61.111 15.58 0.00 36.09 2.32
1091 1159 2.522193 CGGGAGGGGAGTAGGAGC 60.522 72.222 0.00 0.00 0.00 4.70
1093 1161 4.517934 CGCGGGAGGGGAGTAGGA 62.518 72.222 0.00 0.00 39.41 2.94
1539 1607 4.821589 CTGGCCTCTTCGTCCGCC 62.822 72.222 3.32 0.00 41.99 6.13
1545 1613 1.153469 GGCTCTTCTGGCCTCTTCG 60.153 63.158 3.32 0.00 45.57 3.79
1584 1652 3.855853 GCTTCCTCCTCCGCCTCC 61.856 72.222 0.00 0.00 0.00 4.30
1585 1653 3.855853 GGCTTCCTCCTCCGCCTC 61.856 72.222 0.00 0.00 39.42 4.70
1587 1655 4.168291 CAGGCTTCCTCCTCCGCC 62.168 72.222 0.00 0.00 42.79 6.13
1590 1658 1.557269 TTCTGCAGGCTTCCTCCTCC 61.557 60.000 15.13 0.00 33.25 4.30
1653 1721 1.153823 CCACGCCTCGGACAAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
1696 1764 0.250640 CTGAAGTTGCTCAGCACCCT 60.251 55.000 0.00 0.00 38.71 4.34
1737 1805 1.079057 GTTCTCCTTGAGGTCGGCC 60.079 63.158 0.00 0.00 36.34 6.13
1740 1808 0.533032 GGAGGTTCTCCTTGAGGTCG 59.467 60.000 6.70 0.00 46.41 4.79
1798 1866 2.517959 CTCCATCTTGGTCAAGGCAAA 58.482 47.619 10.39 0.00 39.03 3.68
1799 1867 1.272092 CCTCCATCTTGGTCAAGGCAA 60.272 52.381 10.39 0.00 39.03 4.52
1803 1871 1.747709 CTGCCTCCATCTTGGTCAAG 58.252 55.000 4.44 4.44 39.03 3.02
1814 1882 0.398381 AAAAAGTTGGGCTGCCTCCA 60.398 50.000 19.68 6.04 0.00 3.86
1815 1883 0.318441 GAAAAAGTTGGGCTGCCTCC 59.682 55.000 19.68 2.99 0.00 4.30
1816 1884 0.318441 GGAAAAAGTTGGGCTGCCTC 59.682 55.000 19.68 9.39 0.00 4.70
1817 1885 0.105504 AGGAAAAAGTTGGGCTGCCT 60.106 50.000 19.68 0.00 0.00 4.75
1818 1886 0.033920 CAGGAAAAAGTTGGGCTGCC 59.966 55.000 11.05 11.05 0.00 4.85
1819 1887 0.601046 GCAGGAAAAAGTTGGGCTGC 60.601 55.000 0.00 0.00 0.00 5.25
1820 1888 0.033920 GGCAGGAAAAAGTTGGGCTG 59.966 55.000 0.00 0.00 0.00 4.85
1821 1889 1.463553 CGGCAGGAAAAAGTTGGGCT 61.464 55.000 0.00 0.00 0.00 5.19
1827 1895 3.443588 GGCACGGCAGGAAAAAGT 58.556 55.556 0.00 0.00 0.00 2.66
1844 1918 1.739466 CAGTTCATCATTCCACCCACG 59.261 52.381 0.00 0.00 0.00 4.94
1939 2013 9.559958 CCTGAGTTGTGAATACATTTTACATTC 57.440 33.333 0.00 0.00 36.53 2.67
1957 2031 0.606401 ATGGCCGTGAACCTGAGTTG 60.606 55.000 0.00 0.00 35.94 3.16
1959 2033 1.003355 CATGGCCGTGAACCTGAGT 60.003 57.895 21.08 0.00 0.00 3.41
1960 2034 2.401766 GCATGGCCGTGAACCTGAG 61.402 63.158 29.54 0.00 0.00 3.35
1972 2046 3.372822 CACATTTCATTTTGAGGCATGGC 59.627 43.478 12.14 12.14 0.00 4.40
1973 2047 4.823157 TCACATTTCATTTTGAGGCATGG 58.177 39.130 0.00 0.00 0.00 3.66
1978 2052 7.381948 TCGACATTTTCACATTTCATTTTGAGG 59.618 33.333 0.00 0.00 0.00 3.86
1979 2053 8.284557 TCGACATTTTCACATTTCATTTTGAG 57.715 30.769 0.00 0.00 0.00 3.02
1980 2054 8.815141 ATCGACATTTTCACATTTCATTTTGA 57.185 26.923 0.00 0.00 0.00 2.69
1984 2083 6.029607 CGGATCGACATTTTCACATTTCATT 58.970 36.000 0.00 0.00 0.00 2.57
1986 2085 4.693095 TCGGATCGACATTTTCACATTTCA 59.307 37.500 0.00 0.00 0.00 2.69
2002 2116 6.537566 GGAAACAATGATATCAATCGGATCG 58.462 40.000 9.99 0.00 37.44 3.69
2066 2193 5.297776 ACAGCGAATTATGGGAGAATTCTTG 59.702 40.000 9.87 1.54 39.92 3.02
2076 2203 4.701956 AAAGTTCACAGCGAATTATGGG 57.298 40.909 0.00 0.00 35.63 4.00
2077 2204 7.471721 TGATAAAAGTTCACAGCGAATTATGG 58.528 34.615 0.00 0.00 35.63 2.74
2086 2213 5.853282 GTCACACATGATAAAAGTTCACAGC 59.147 40.000 0.00 0.00 37.14 4.40
2106 2233 1.800315 CCCGATCACGTCACGTCAC 60.800 63.158 0.00 0.00 38.32 3.67
2111 2238 0.458025 GTTCCTCCCGATCACGTCAC 60.458 60.000 0.00 0.00 37.88 3.67
2121 2248 2.483889 GGCTCTTAGATTGTTCCTCCCG 60.484 54.545 0.00 0.00 0.00 5.14
2126 2253 1.209747 ACCCGGCTCTTAGATTGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
2166 2293 1.612442 TGGCCTTCTCCGCTACCTT 60.612 57.895 3.32 0.00 0.00 3.50
2170 2297 2.359169 CCAGTGGCCTTCTCCGCTA 61.359 63.158 3.32 0.00 44.59 4.26
2204 2341 2.088950 TCATTTCCCTTCGTTCGGAC 57.911 50.000 0.00 0.00 0.00 4.79
2207 2344 3.675467 GGAATCATTTCCCTTCGTTCG 57.325 47.619 0.00 0.00 44.96 3.95
2212 2349 6.856149 AGGCAACATGGAATCATTTCCCTTC 61.856 44.000 0.00 0.00 45.59 3.46
2216 2353 3.788937 CAGGCAACATGGAATCATTTCC 58.211 45.455 0.00 0.00 46.07 3.13
2259 2421 2.092321 TCCCAAAAGGAAACTCACGGAA 60.092 45.455 0.00 0.00 43.78 4.30
2316 2480 1.204467 CAAACCCAACCATTCCATCGG 59.796 52.381 0.00 0.00 0.00 4.18
2323 2491 6.183360 GCAACAAATAAACAAACCCAACCATT 60.183 34.615 0.00 0.00 0.00 3.16
2326 2494 4.878971 AGCAACAAATAAACAAACCCAACC 59.121 37.500 0.00 0.00 0.00 3.77
2327 2495 5.582665 TCAGCAACAAATAAACAAACCCAAC 59.417 36.000 0.00 0.00 0.00 3.77
2332 2500 7.698836 ATCACTCAGCAACAAATAAACAAAC 57.301 32.000 0.00 0.00 0.00 2.93
2354 2522 4.285292 CGCTCATGGAAAATGTGCTAATC 58.715 43.478 9.78 0.00 36.66 1.75
2355 2523 3.489738 GCGCTCATGGAAAATGTGCTAAT 60.490 43.478 0.00 0.00 36.66 1.73
2411 2581 1.290203 CTATCCGTTGCGTGCATCTT 58.710 50.000 0.00 0.00 0.00 2.40
2412 2582 0.175760 ACTATCCGTTGCGTGCATCT 59.824 50.000 0.00 0.00 0.00 2.90
2437 2608 0.039165 GCCACCTACAAGCAAACAGC 60.039 55.000 0.00 0.00 46.19 4.40
2441 2612 2.265182 GCGGCCACCTACAAGCAAA 61.265 57.895 2.24 0.00 0.00 3.68
2453 2624 1.153449 CGAGTCAAATAGGCGGCCA 60.153 57.895 23.09 7.74 0.00 5.36
2495 2666 3.162666 TCCCACAGACATCGTCTAGTTT 58.837 45.455 0.00 0.00 41.37 2.66
2496 2667 2.755655 CTCCCACAGACATCGTCTAGTT 59.244 50.000 0.00 0.00 41.37 2.24
2497 2668 2.291024 ACTCCCACAGACATCGTCTAGT 60.291 50.000 0.00 0.00 41.37 2.57
2498 2669 2.356382 GACTCCCACAGACATCGTCTAG 59.644 54.545 0.00 0.00 41.37 2.43
2499 2670 2.366533 GACTCCCACAGACATCGTCTA 58.633 52.381 0.00 0.00 41.37 2.59
2500 2671 1.178276 GACTCCCACAGACATCGTCT 58.822 55.000 0.00 0.00 44.44 4.18
2501 2672 0.173708 GGACTCCCACAGACATCGTC 59.826 60.000 0.00 0.00 0.00 4.20
2502 2673 1.595993 CGGACTCCCACAGACATCGT 61.596 60.000 0.00 0.00 0.00 3.73
2503 2674 1.139734 CGGACTCCCACAGACATCG 59.860 63.158 0.00 0.00 0.00 3.84
2504 2675 1.517832 CCGGACTCCCACAGACATC 59.482 63.158 0.00 0.00 0.00 3.06
2505 2676 2.660064 GCCGGACTCCCACAGACAT 61.660 63.158 5.05 0.00 0.00 3.06
2506 2677 3.311110 GCCGGACTCCCACAGACA 61.311 66.667 5.05 0.00 0.00 3.41
2507 2678 3.302347 CTGCCGGACTCCCACAGAC 62.302 68.421 5.05 0.00 38.10 3.51
2508 2679 2.997315 CTGCCGGACTCCCACAGA 60.997 66.667 5.05 0.00 38.10 3.41
2509 2680 3.302347 GACTGCCGGACTCCCACAG 62.302 68.421 5.05 3.05 40.36 3.66
2510 2681 3.311110 GACTGCCGGACTCCCACA 61.311 66.667 5.05 0.00 0.00 4.17
2511 2682 4.083862 GGACTGCCGGACTCCCAC 62.084 72.222 5.05 0.00 0.00 4.61
2521 2692 2.165301 GCATACGTGACGGACTGCC 61.165 63.158 10.66 0.00 0.00 4.85
2522 2693 2.505498 CGCATACGTGACGGACTGC 61.505 63.158 10.66 13.62 33.53 4.40
2523 2694 2.505498 GCGCATACGTGACGGACTG 61.505 63.158 10.66 4.63 42.83 3.51
2524 2695 2.202570 GCGCATACGTGACGGACT 60.203 61.111 10.66 0.00 42.83 3.85
2525 2696 3.252484 GGCGCATACGTGACGGAC 61.252 66.667 10.83 0.00 42.83 4.79
2526 2697 3.405592 GAGGCGCATACGTGACGGA 62.406 63.158 10.83 0.00 42.83 4.69
2527 2698 2.954020 ATGAGGCGCATACGTGACGG 62.954 60.000 10.83 0.00 42.83 4.79
2528 2699 1.145759 AATGAGGCGCATACGTGACG 61.146 55.000 10.83 2.24 42.83 4.35
2529 2700 0.301687 CAATGAGGCGCATACGTGAC 59.698 55.000 10.83 0.00 42.83 3.67
2530 2701 0.108377 ACAATGAGGCGCATACGTGA 60.108 50.000 10.83 0.00 42.83 4.35
2531 2702 0.301687 GACAATGAGGCGCATACGTG 59.698 55.000 10.83 2.97 42.83 4.49
2532 2703 0.108377 TGACAATGAGGCGCATACGT 60.108 50.000 10.83 5.02 42.83 3.57
2533 2704 1.070376 CATGACAATGAGGCGCATACG 60.070 52.381 10.83 1.53 35.78 3.06
2534 2705 1.942657 ACATGACAATGAGGCGCATAC 59.057 47.619 10.83 0.00 35.78 2.39
2535 2706 2.158914 AGACATGACAATGAGGCGCATA 60.159 45.455 10.83 0.00 35.78 3.14
2536 2707 1.019673 GACATGACAATGAGGCGCAT 58.980 50.000 10.83 0.00 39.43 4.73
2537 2708 0.036105 AGACATGACAATGAGGCGCA 60.036 50.000 10.83 0.00 37.24 6.09
2538 2709 0.654683 GAGACATGACAATGAGGCGC 59.345 55.000 0.00 0.00 37.24 6.53
2539 2710 1.662629 GTGAGACATGACAATGAGGCG 59.337 52.381 0.00 0.00 37.24 5.52
2540 2711 2.012673 GGTGAGACATGACAATGAGGC 58.987 52.381 0.00 0.00 37.24 4.70
2541 2712 2.026915 TGGGTGAGACATGACAATGAGG 60.027 50.000 0.00 0.00 37.24 3.86
2542 2713 3.339253 TGGGTGAGACATGACAATGAG 57.661 47.619 0.00 0.00 37.24 2.90
2543 2714 3.786368 TTGGGTGAGACATGACAATGA 57.214 42.857 0.00 0.00 37.24 2.57
2544 2715 4.852134 TTTTGGGTGAGACATGACAATG 57.148 40.909 0.00 0.00 39.89 2.82
2545 2716 4.039124 GGTTTTTGGGTGAGACATGACAAT 59.961 41.667 0.00 0.00 0.00 2.71
2546 2717 3.383185 GGTTTTTGGGTGAGACATGACAA 59.617 43.478 0.00 0.00 0.00 3.18
2547 2718 2.955660 GGTTTTTGGGTGAGACATGACA 59.044 45.455 0.00 0.00 0.00 3.58
2548 2719 3.222603 AGGTTTTTGGGTGAGACATGAC 58.777 45.455 0.00 0.00 0.00 3.06
2549 2720 3.138283 AGAGGTTTTTGGGTGAGACATGA 59.862 43.478 0.00 0.00 0.00 3.07
2550 2721 3.490348 AGAGGTTTTTGGGTGAGACATG 58.510 45.455 0.00 0.00 0.00 3.21
2551 2722 3.884037 AGAGGTTTTTGGGTGAGACAT 57.116 42.857 0.00 0.00 0.00 3.06
2552 2723 3.662759 AAGAGGTTTTTGGGTGAGACA 57.337 42.857 0.00 0.00 0.00 3.41
2553 2724 3.502595 GCTAAGAGGTTTTTGGGTGAGAC 59.497 47.826 0.00 0.00 0.00 3.36
2554 2725 3.497942 GGCTAAGAGGTTTTTGGGTGAGA 60.498 47.826 0.00 0.00 0.00 3.27
2555 2726 2.820197 GGCTAAGAGGTTTTTGGGTGAG 59.180 50.000 0.00 0.00 0.00 3.51
2556 2727 2.445525 AGGCTAAGAGGTTTTTGGGTGA 59.554 45.455 0.00 0.00 0.00 4.02
2557 2728 2.820197 GAGGCTAAGAGGTTTTTGGGTG 59.180 50.000 0.00 0.00 0.00 4.61
2558 2729 2.445525 TGAGGCTAAGAGGTTTTTGGGT 59.554 45.455 0.00 0.00 0.00 4.51
2559 2730 3.084786 CTGAGGCTAAGAGGTTTTTGGG 58.915 50.000 0.00 0.00 0.00 4.12
2560 2731 4.021102 TCTGAGGCTAAGAGGTTTTTGG 57.979 45.455 0.00 0.00 0.00 3.28
2561 2732 5.278512 GGTTTCTGAGGCTAAGAGGTTTTTG 60.279 44.000 0.93 0.00 0.00 2.44
2562 2733 4.827835 GGTTTCTGAGGCTAAGAGGTTTTT 59.172 41.667 0.93 0.00 0.00 1.94
2563 2734 4.399219 GGTTTCTGAGGCTAAGAGGTTTT 58.601 43.478 0.93 0.00 0.00 2.43
2564 2735 3.244946 GGGTTTCTGAGGCTAAGAGGTTT 60.245 47.826 0.93 0.00 0.00 3.27
2565 2736 2.306219 GGGTTTCTGAGGCTAAGAGGTT 59.694 50.000 0.93 0.00 0.00 3.50
2566 2737 1.909986 GGGTTTCTGAGGCTAAGAGGT 59.090 52.381 0.93 0.00 0.00 3.85
2567 2738 2.169561 GAGGGTTTCTGAGGCTAAGAGG 59.830 54.545 0.93 0.00 0.00 3.69
2568 2739 3.103742 AGAGGGTTTCTGAGGCTAAGAG 58.896 50.000 0.93 0.00 33.93 2.85
2569 2740 3.191888 AGAGGGTTTCTGAGGCTAAGA 57.808 47.619 0.00 0.00 33.93 2.10
2570 2741 3.677424 CGAAGAGGGTTTCTGAGGCTAAG 60.677 52.174 0.00 0.00 35.91 2.18
2571 2742 2.233922 CGAAGAGGGTTTCTGAGGCTAA 59.766 50.000 0.00 0.00 35.91 3.09
2572 2743 1.825474 CGAAGAGGGTTTCTGAGGCTA 59.175 52.381 0.00 0.00 35.91 3.93
2573 2744 0.610687 CGAAGAGGGTTTCTGAGGCT 59.389 55.000 0.00 0.00 35.91 4.58
2574 2745 0.321996 ACGAAGAGGGTTTCTGAGGC 59.678 55.000 0.00 0.00 35.91 4.70
2575 2746 1.344763 ACACGAAGAGGGTTTCTGAGG 59.655 52.381 0.00 0.00 35.91 3.86
2576 2747 2.821991 ACACGAAGAGGGTTTCTGAG 57.178 50.000 0.00 0.00 35.91 3.35
2577 2748 4.628074 CTTTACACGAAGAGGGTTTCTGA 58.372 43.478 0.00 0.00 37.78 3.27
2578 2749 3.186613 GCTTTACACGAAGAGGGTTTCTG 59.813 47.826 0.00 0.00 37.78 3.02
2579 2750 3.400255 GCTTTACACGAAGAGGGTTTCT 58.600 45.455 0.00 0.00 37.78 2.52
2580 2751 2.157085 CGCTTTACACGAAGAGGGTTTC 59.843 50.000 0.00 0.00 37.78 2.78
2581 2752 2.140717 CGCTTTACACGAAGAGGGTTT 58.859 47.619 0.00 0.00 37.78 3.27
2582 2753 1.607251 CCGCTTTACACGAAGAGGGTT 60.607 52.381 0.00 0.00 41.29 4.11
2583 2754 0.037605 CCGCTTTACACGAAGAGGGT 60.038 55.000 0.00 0.00 41.29 4.34
2584 2755 0.037605 ACCGCTTTACACGAAGAGGG 60.038 55.000 11.20 3.77 46.88 4.30
2586 2757 2.665052 GGTAACCGCTTTACACGAAGAG 59.335 50.000 0.00 0.00 41.87 2.85
2587 2758 2.676076 GGTAACCGCTTTACACGAAGA 58.324 47.619 0.00 0.00 41.87 2.87
2588 2759 1.387756 CGGTAACCGCTTTACACGAAG 59.612 52.381 0.00 0.00 41.87 3.79
2589 2760 1.417372 CGGTAACCGCTTTACACGAA 58.583 50.000 0.00 0.00 41.87 3.85
2590 2761 3.105514 CGGTAACCGCTTTACACGA 57.894 52.632 0.00 0.00 41.87 4.35
2600 2771 2.284150 CAGTATGAATGTGCGGTAACCG 59.716 50.000 0.00 0.00 45.77 4.44
2601 2772 3.527533 TCAGTATGAATGTGCGGTAACC 58.472 45.455 0.00 0.00 45.97 2.85
2620 2791 0.171231 CGTCCGCTCTGAACTGATCA 59.829 55.000 0.00 0.00 36.38 2.92
2621 2792 0.171455 ACGTCCGCTCTGAACTGATC 59.829 55.000 0.00 0.00 0.00 2.92
2622 2793 0.109086 CACGTCCGCTCTGAACTGAT 60.109 55.000 0.00 0.00 0.00 2.90
2623 2794 1.170290 TCACGTCCGCTCTGAACTGA 61.170 55.000 0.00 0.00 0.00 3.41
2624 2795 1.004277 GTCACGTCCGCTCTGAACTG 61.004 60.000 0.00 0.00 0.00 3.16
2625 2796 1.173444 AGTCACGTCCGCTCTGAACT 61.173 55.000 0.00 0.00 0.00 3.01
2626 2797 0.729816 GAGTCACGTCCGCTCTGAAC 60.730 60.000 0.00 0.00 0.00 3.18
2627 2798 1.579932 GAGTCACGTCCGCTCTGAA 59.420 57.895 0.00 0.00 0.00 3.02
2628 2799 2.333417 GGAGTCACGTCCGCTCTGA 61.333 63.158 9.47 0.00 0.00 3.27
2629 2800 2.179517 GGAGTCACGTCCGCTCTG 59.820 66.667 9.47 0.00 0.00 3.35
2630 2801 2.282251 TGGAGTCACGTCCGCTCT 60.282 61.111 9.47 0.00 39.81 4.09
2631 2802 2.126424 GTGGAGTCACGTCCGCTC 60.126 66.667 0.00 0.00 42.90 5.03
2632 2803 1.816863 ATTGTGGAGTCACGTCCGCT 61.817 55.000 6.19 0.00 45.89 5.52
2633 2804 1.374252 ATTGTGGAGTCACGTCCGC 60.374 57.895 0.00 0.00 46.42 5.54
2634 2805 0.319555 ACATTGTGGAGTCACGTCCG 60.320 55.000 0.00 0.00 46.42 4.79
2635 2806 1.531149 CAACATTGTGGAGTCACGTCC 59.469 52.381 0.00 0.00 46.42 4.79
2636 2807 1.531149 CCAACATTGTGGAGTCACGTC 59.469 52.381 0.00 0.00 46.42 4.34
2637 2808 1.134220 ACCAACATTGTGGAGTCACGT 60.134 47.619 10.89 0.00 46.42 4.49
2638 2809 1.264020 CACCAACATTGTGGAGTCACG 59.736 52.381 10.89 0.00 46.42 4.35
2639 2810 2.297701 ACACCAACATTGTGGAGTCAC 58.702 47.619 10.89 0.00 37.92 3.67
2640 2811 2.727123 ACACCAACATTGTGGAGTCA 57.273 45.000 10.89 0.00 37.92 3.41
2642 2813 1.593196 CGACACCAACATTGTGGAGT 58.407 50.000 10.89 9.20 44.10 3.85
2643 2814 0.874390 CCGACACCAACATTGTGGAG 59.126 55.000 10.89 6.69 41.65 3.86
2644 2815 0.181587 ACCGACACCAACATTGTGGA 59.818 50.000 10.89 0.00 41.65 4.02
2645 2816 1.028905 AACCGACACCAACATTGTGG 58.971 50.000 0.00 0.00 44.92 4.17
2646 2817 3.135225 TCTAACCGACACCAACATTGTG 58.865 45.455 0.00 0.00 0.00 3.33
2647 2818 3.399330 CTCTAACCGACACCAACATTGT 58.601 45.455 0.00 0.00 0.00 2.71
2648 2819 2.159627 GCTCTAACCGACACCAACATTG 59.840 50.000 0.00 0.00 0.00 2.82
2649 2820 2.224426 TGCTCTAACCGACACCAACATT 60.224 45.455 0.00 0.00 0.00 2.71
2650 2821 1.346395 TGCTCTAACCGACACCAACAT 59.654 47.619 0.00 0.00 0.00 2.71
2651 2822 0.753867 TGCTCTAACCGACACCAACA 59.246 50.000 0.00 0.00 0.00 3.33
2652 2823 1.529865 GTTGCTCTAACCGACACCAAC 59.470 52.381 0.00 0.00 33.01 3.77
2653 2824 1.870580 CGTTGCTCTAACCGACACCAA 60.871 52.381 0.00 0.00 35.84 3.67
2654 2825 0.319211 CGTTGCTCTAACCGACACCA 60.319 55.000 0.00 0.00 35.84 4.17
2655 2826 0.038892 TCGTTGCTCTAACCGACACC 60.039 55.000 0.00 0.00 35.84 4.16
2656 2827 1.337821 CTCGTTGCTCTAACCGACAC 58.662 55.000 0.00 0.00 35.84 3.67
2657 2828 0.242825 CCTCGTTGCTCTAACCGACA 59.757 55.000 0.00 0.00 35.84 4.35
2658 2829 0.243095 ACCTCGTTGCTCTAACCGAC 59.757 55.000 0.00 0.00 35.84 4.79
2659 2830 0.524862 GACCTCGTTGCTCTAACCGA 59.475 55.000 0.00 0.00 35.84 4.69
2660 2831 0.797249 CGACCTCGTTGCTCTAACCG 60.797 60.000 0.00 0.00 35.84 4.44
2661 2832 0.458025 CCGACCTCGTTGCTCTAACC 60.458 60.000 0.00 0.00 35.84 2.85
2662 2833 0.524862 TCCGACCTCGTTGCTCTAAC 59.475 55.000 0.00 0.00 37.74 2.34
2663 2834 1.134367 CATCCGACCTCGTTGCTCTAA 59.866 52.381 0.00 0.00 37.74 2.10
2664 2835 0.738975 CATCCGACCTCGTTGCTCTA 59.261 55.000 0.00 0.00 37.74 2.43
2665 2836 0.965866 TCATCCGACCTCGTTGCTCT 60.966 55.000 0.00 0.00 37.74 4.09
2666 2837 0.108804 TTCATCCGACCTCGTTGCTC 60.109 55.000 0.00 0.00 37.74 4.26
2667 2838 0.389948 GTTCATCCGACCTCGTTGCT 60.390 55.000 0.00 0.00 37.74 3.91
2668 2839 1.683790 CGTTCATCCGACCTCGTTGC 61.684 60.000 0.00 0.00 37.74 4.17
2669 2840 1.076533 CCGTTCATCCGACCTCGTTG 61.077 60.000 0.00 0.00 37.74 4.10
2670 2841 1.214589 CCGTTCATCCGACCTCGTT 59.785 57.895 0.00 0.00 37.74 3.85
2671 2842 2.707849 CCCGTTCATCCGACCTCGT 61.708 63.158 0.00 0.00 37.74 4.18
2672 2843 2.104331 CCCGTTCATCCGACCTCG 59.896 66.667 0.00 0.00 39.44 4.63
2673 2844 2.202892 GCCCGTTCATCCGACCTC 60.203 66.667 0.00 0.00 0.00 3.85
2674 2845 3.000819 TGCCCGTTCATCCGACCT 61.001 61.111 0.00 0.00 0.00 3.85
2675 2846 2.511600 CTGCCCGTTCATCCGACC 60.512 66.667 0.00 0.00 0.00 4.79
2676 2847 2.511600 CCTGCCCGTTCATCCGAC 60.512 66.667 0.00 0.00 0.00 4.79
2677 2848 4.467084 GCCTGCCCGTTCATCCGA 62.467 66.667 0.00 0.00 0.00 4.55
2678 2849 3.976701 AAGCCTGCCCGTTCATCCG 62.977 63.158 0.00 0.00 0.00 4.18
2679 2850 2.044946 AAGCCTGCCCGTTCATCC 60.045 61.111 0.00 0.00 0.00 3.51
2680 2851 3.056313 GCAAGCCTGCCCGTTCATC 62.056 63.158 0.00 0.00 43.26 2.92
2681 2852 3.064324 GCAAGCCTGCCCGTTCAT 61.064 61.111 0.00 0.00 43.26 2.57
2710 2881 1.656818 TTAATGCTGCTCGGGCTTGC 61.657 55.000 9.62 14.06 39.59 4.01
2711 2882 0.099436 GTTAATGCTGCTCGGGCTTG 59.901 55.000 9.62 2.06 39.59 4.01
2712 2883 1.369091 CGTTAATGCTGCTCGGGCTT 61.369 55.000 9.62 0.00 39.59 4.35
2713 2884 1.815421 CGTTAATGCTGCTCGGGCT 60.815 57.895 9.62 0.00 39.59 5.19
2714 2885 1.366111 TTCGTTAATGCTGCTCGGGC 61.366 55.000 0.00 0.00 39.26 6.13
2715 2886 0.652592 CTTCGTTAATGCTGCTCGGG 59.347 55.000 0.00 0.00 0.00 5.14
2716 2887 1.324736 GACTTCGTTAATGCTGCTCGG 59.675 52.381 0.00 0.00 0.00 4.63
2717 2888 1.324736 GGACTTCGTTAATGCTGCTCG 59.675 52.381 0.00 0.00 0.00 5.03
2718 2889 1.324736 CGGACTTCGTTAATGCTGCTC 59.675 52.381 0.00 0.00 0.00 4.26
2719 2890 1.359848 CGGACTTCGTTAATGCTGCT 58.640 50.000 0.00 0.00 0.00 4.24
2720 2891 3.877801 CGGACTTCGTTAATGCTGC 57.122 52.632 0.00 0.00 0.00 5.25
2743 2914 3.833645 TACAGGCCTACCAGCGCG 61.834 66.667 3.98 0.00 39.06 6.86
2744 2915 2.202892 GTACAGGCCTACCAGCGC 60.203 66.667 3.98 0.00 39.06 5.92
2745 2916 2.499685 GGTACAGGCCTACCAGCG 59.500 66.667 18.42 1.77 36.84 5.18
2746 2917 2.908796 GGGTACAGGCCTACCAGC 59.091 66.667 23.47 12.84 38.41 4.85
2747 2918 1.684734 ACGGGTACAGGCCTACCAG 60.685 63.158 23.47 21.62 38.41 4.00
2748 2919 1.985662 CACGGGTACAGGCCTACCA 60.986 63.158 23.47 1.57 38.41 3.25
2749 2920 1.047034 ATCACGGGTACAGGCCTACC 61.047 60.000 15.52 15.52 36.19 3.18
2750 2921 0.104304 CATCACGGGTACAGGCCTAC 59.896 60.000 3.98 0.00 0.00 3.18
2751 2922 1.046472 CCATCACGGGTACAGGCCTA 61.046 60.000 3.98 0.00 0.00 3.93
2752 2923 2.367202 CCATCACGGGTACAGGCCT 61.367 63.158 0.00 0.00 0.00 5.19
2753 2924 2.189521 CCATCACGGGTACAGGCC 59.810 66.667 0.00 0.00 0.00 5.19
2762 2933 1.227263 GGTCATCGACCCATCACGG 60.227 63.158 1.47 0.00 46.19 4.94
2763 2934 4.420143 GGTCATCGACCCATCACG 57.580 61.111 1.47 0.00 46.19 4.35
2772 2943 2.796193 CCTCCATGGCGGTCATCGA 61.796 63.158 13.01 0.00 42.43 3.59
2773 2944 2.280389 CCTCCATGGCGGTCATCG 60.280 66.667 13.01 0.00 42.76 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.