Multiple sequence alignment - TraesCS7A01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G353600 chr7A 100.000 2660 0 0 1 2660 517582165 517579506 0.000000e+00 4913
1 TraesCS7A01G353600 chr7B 91.876 2105 105 30 60 2128 503272311 503274385 0.000000e+00 2880
2 TraesCS7A01G353600 chr7D 94.699 1113 49 2 56 1159 478080170 478081281 0.000000e+00 1720
3 TraesCS7A01G353600 chr7D 94.852 641 32 1 1157 1796 478081515 478082155 0.000000e+00 1000
4 TraesCS7A01G353600 chr7D 85.922 412 47 9 2147 2555 478083349 478083752 1.890000e-116 429
5 TraesCS7A01G353600 chr2D 77.807 1496 310 19 160 1641 94868582 94870069 0.000000e+00 904
6 TraesCS7A01G353600 chr1D 77.454 1508 303 29 160 1641 427704910 427706406 0.000000e+00 867
7 TraesCS7A01G353600 chr1D 76.883 1527 318 29 160 1660 482993425 482991908 0.000000e+00 832
8 TraesCS7A01G353600 chr1D 76.985 1499 314 25 166 1641 487223995 487222505 0.000000e+00 828
9 TraesCS7A01G353600 chr1A 77.447 1512 299 33 160 1641 584809029 584807530 0.000000e+00 865
10 TraesCS7A01G353600 chr1B 77.067 1500 316 22 160 1638 678470033 678471525 0.000000e+00 839
11 TraesCS7A01G353600 chr5D 75.628 677 148 16 166 835 371862167 371862833 1.190000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G353600 chr7A 517579506 517582165 2659 True 4913.000000 4913 100.000000 1 2660 1 chr7A.!!$R1 2659
1 TraesCS7A01G353600 chr7B 503272311 503274385 2074 False 2880.000000 2880 91.876000 60 2128 1 chr7B.!!$F1 2068
2 TraesCS7A01G353600 chr7D 478080170 478083752 3582 False 1049.666667 1720 91.824333 56 2555 3 chr7D.!!$F1 2499
3 TraesCS7A01G353600 chr2D 94868582 94870069 1487 False 904.000000 904 77.807000 160 1641 1 chr2D.!!$F1 1481
4 TraesCS7A01G353600 chr1D 427704910 427706406 1496 False 867.000000 867 77.454000 160 1641 1 chr1D.!!$F1 1481
5 TraesCS7A01G353600 chr1D 482991908 482993425 1517 True 832.000000 832 76.883000 160 1660 1 chr1D.!!$R1 1500
6 TraesCS7A01G353600 chr1D 487222505 487223995 1490 True 828.000000 828 76.985000 166 1641 1 chr1D.!!$R2 1475
7 TraesCS7A01G353600 chr1A 584807530 584809029 1499 True 865.000000 865 77.447000 160 1641 1 chr1A.!!$R1 1481
8 TraesCS7A01G353600 chr1B 678470033 678471525 1492 False 839.000000 839 77.067000 160 1638 1 chr1B.!!$F1 1478
9 TraesCS7A01G353600 chr5D 371862167 371862833 666 False 320.000000 320 75.628000 166 835 1 chr5D.!!$F1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.032952 TCCAAACCGACCGAGAGTTG 59.967 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2463 0.599558 CGACGGACTGGAGGTTAACA 59.4 55.0 8.1 0.0 0.0 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.352114 TTGCTAAACGTCGGATTCGG 58.648 50.000 0.00 0.00 36.95 4.30
20 21 0.527113 TGCTAAACGTCGGATTCGGA 59.473 50.000 0.00 0.00 36.95 4.55
21 22 1.135527 TGCTAAACGTCGGATTCGGAT 59.864 47.619 0.00 0.00 36.95 4.18
22 23 1.521423 GCTAAACGTCGGATTCGGATG 59.479 52.381 10.86 10.86 36.95 3.51
23 24 2.805845 CTAAACGTCGGATTCGGATGT 58.194 47.619 11.99 11.99 36.95 3.06
24 25 2.088950 AAACGTCGGATTCGGATGTT 57.911 45.000 20.17 20.17 36.95 2.71
25 26 2.088950 AACGTCGGATTCGGATGTTT 57.911 45.000 20.17 9.38 36.95 2.83
26 27 1.636988 ACGTCGGATTCGGATGTTTC 58.363 50.000 11.99 0.00 36.95 2.78
27 28 1.203994 ACGTCGGATTCGGATGTTTCT 59.796 47.619 11.99 0.00 36.95 2.52
28 29 1.852895 CGTCGGATTCGGATGTTTCTC 59.147 52.381 0.00 0.00 36.95 2.87
29 30 2.479730 CGTCGGATTCGGATGTTTCTCT 60.480 50.000 0.00 0.00 36.95 3.10
30 31 2.860735 GTCGGATTCGGATGTTTCTCTG 59.139 50.000 0.00 0.00 36.95 3.35
31 32 1.594862 CGGATTCGGATGTTTCTCTGC 59.405 52.381 0.00 0.00 0.00 4.26
32 33 2.632377 GGATTCGGATGTTTCTCTGCA 58.368 47.619 0.00 0.00 0.00 4.41
33 34 3.209410 GGATTCGGATGTTTCTCTGCAT 58.791 45.455 0.00 0.00 0.00 3.96
34 35 3.249559 GGATTCGGATGTTTCTCTGCATC 59.750 47.826 0.00 0.00 40.36 3.91
40 41 4.102035 GATGTTTCTCTGCATCCAAACC 57.898 45.455 10.42 0.00 36.43 3.27
41 42 1.879380 TGTTTCTCTGCATCCAAACCG 59.121 47.619 10.42 0.00 0.00 4.44
42 43 2.151202 GTTTCTCTGCATCCAAACCGA 58.849 47.619 0.00 0.00 0.00 4.69
43 44 1.808411 TTCTCTGCATCCAAACCGAC 58.192 50.000 0.00 0.00 0.00 4.79
44 45 0.036388 TCTCTGCATCCAAACCGACC 60.036 55.000 0.00 0.00 0.00 4.79
45 46 1.361668 CTCTGCATCCAAACCGACCG 61.362 60.000 0.00 0.00 0.00 4.79
46 47 1.375396 CTGCATCCAAACCGACCGA 60.375 57.895 0.00 0.00 0.00 4.69
47 48 1.361668 CTGCATCCAAACCGACCGAG 61.362 60.000 0.00 0.00 0.00 4.63
48 49 1.079405 GCATCCAAACCGACCGAGA 60.079 57.895 0.00 0.00 0.00 4.04
49 50 1.084370 GCATCCAAACCGACCGAGAG 61.084 60.000 0.00 0.00 0.00 3.20
50 51 0.246635 CATCCAAACCGACCGAGAGT 59.753 55.000 0.00 0.00 0.00 3.24
51 52 0.974383 ATCCAAACCGACCGAGAGTT 59.026 50.000 0.00 0.00 0.00 3.01
52 53 0.032952 TCCAAACCGACCGAGAGTTG 59.967 55.000 0.00 0.00 0.00 3.16
53 54 1.566018 CCAAACCGACCGAGAGTTGC 61.566 60.000 0.00 0.00 0.00 4.17
54 55 0.600255 CAAACCGACCGAGAGTTGCT 60.600 55.000 0.00 0.00 0.00 3.91
65 66 2.736719 CGAGAGTTGCTCCCACATACTG 60.737 54.545 0.00 0.00 40.70 2.74
281 294 4.485834 CGATTCGTCACGCCGGGA 62.486 66.667 2.18 0.00 0.00 5.14
728 750 3.256960 AACAGGACCGCCATGGGT 61.257 61.111 15.13 3.14 44.64 4.51
981 1003 0.609131 CCCTGTTTCTTGGCCGATGT 60.609 55.000 0.00 0.00 0.00 3.06
1055 1077 0.174389 GCTGACTGCGAGGAGATCAA 59.826 55.000 0.00 0.00 0.00 2.57
1119 1141 3.432749 CCAAGCCATTAGAGCTGCTCTTA 60.433 47.826 34.42 26.79 41.50 2.10
1187 1445 0.609662 GTGCAAGTGCCAATCCCATT 59.390 50.000 0.00 0.00 41.18 3.16
1193 1451 2.202783 GCCAATCCCATTGCACGC 60.203 61.111 0.00 0.00 38.92 5.34
1246 1507 2.617546 AGGCCGGGATCCTCATCT 59.382 61.111 12.58 2.15 0.00 2.90
1272 1533 1.153168 CTACGGTGGCAGAATGGGG 60.153 63.158 0.00 0.00 35.86 4.96
1329 1590 3.778629 GGAAGGGGAATCTGTACAACCTA 59.221 47.826 0.00 0.00 0.00 3.08
1443 1704 4.715534 TGTATCCAAGAACCCAAGAACA 57.284 40.909 0.00 0.00 0.00 3.18
1602 1866 3.588842 TGGTGGATCCTGATGACTTCTTT 59.411 43.478 14.23 0.00 37.07 2.52
1649 1913 1.318158 CCTGCTGCAAAGGGATGGAC 61.318 60.000 3.02 0.00 0.00 4.02
1682 1946 5.862678 TTGGAGGTTTGTTTTTCTAAGGG 57.137 39.130 0.00 0.00 0.00 3.95
1717 1982 8.962857 TTTTTGAAAACAAAAAGGATTTGAGC 57.037 26.923 14.13 0.00 39.02 4.26
1739 2004 1.643286 TGGCTGTTATTTGGGATGGGA 59.357 47.619 0.00 0.00 0.00 4.37
1758 2024 5.128205 TGGGATCAGATATGTGCTCTTTTG 58.872 41.667 4.00 0.00 0.00 2.44
1759 2025 5.104402 TGGGATCAGATATGTGCTCTTTTGA 60.104 40.000 4.00 0.00 0.00 2.69
1813 2177 8.691661 AGATGGTATTAAGTTGTCACAAGTTT 57.308 30.769 15.81 4.34 0.00 2.66
1814 2178 9.131791 AGATGGTATTAAGTTGTCACAAGTTTT 57.868 29.630 15.81 7.11 0.00 2.43
1857 2232 6.352016 TGCATTACTTTGGCAATAGGAAAA 57.648 33.333 0.00 0.00 34.05 2.29
1894 2272 6.645306 TCCTCTCAGTCGATATATAGGAGTG 58.355 44.000 12.02 12.02 33.45 3.51
1899 2277 4.646945 CAGTCGATATATAGGAGTGCCCAT 59.353 45.833 7.70 0.00 37.41 4.00
1903 2281 6.535508 GTCGATATATAGGAGTGCCCATTTTC 59.464 42.308 0.00 0.00 37.41 2.29
1930 2308 5.146010 TGTTCCTGCAGTTTGAAAACTTT 57.854 34.783 13.81 0.00 46.52 2.66
1935 2313 5.184096 TCCTGCAGTTTGAAAACTTTGTGTA 59.816 36.000 13.81 0.00 46.52 2.90
1938 2316 6.090129 TGCAGTTTGAAAACTTTGTGTACTC 58.910 36.000 5.70 0.00 46.52 2.59
1940 2318 6.806739 GCAGTTTGAAAACTTTGTGTACTCTT 59.193 34.615 5.70 0.00 46.52 2.85
1983 2465 1.671742 CGGGTCTAGCACCTGTTGT 59.328 57.895 10.45 0.00 45.82 3.32
1996 2478 2.105993 ACCTGTTGTTAACCTCCAGTCC 59.894 50.000 2.48 0.00 0.00 3.85
1999 2481 2.224113 TGTTGTTAACCTCCAGTCCGTC 60.224 50.000 2.48 0.00 0.00 4.79
2024 2508 1.132643 GGTAGTCTACACTGACTGGCG 59.867 57.143 12.08 0.00 45.70 5.69
2038 2522 2.276863 CTGGCGAGCGATCACAGACT 62.277 60.000 14.98 0.00 0.00 3.24
2055 2539 2.906389 AGACTGGCAGATGTTTCTACCA 59.094 45.455 23.66 0.00 42.17 3.25
2093 2577 4.220602 CCCATCAGTTTGAGTTTTTAGGGG 59.779 45.833 0.00 0.00 0.00 4.79
2097 2581 7.014808 CCATCAGTTTGAGTTTTTAGGGGTTTA 59.985 37.037 0.00 0.00 0.00 2.01
2101 2585 8.875803 CAGTTTGAGTTTTTAGGGGTTTAAAAC 58.124 33.333 0.00 0.00 40.36 2.43
2102 2586 8.595421 AGTTTGAGTTTTTAGGGGTTTAAAACA 58.405 29.630 5.45 0.00 41.73 2.83
2105 2589 8.774890 TGAGTTTTTAGGGGTTTAAAACAAAC 57.225 30.769 5.45 6.78 41.73 2.93
2107 2591 9.386010 GAGTTTTTAGGGGTTTAAAACAAACAT 57.614 29.630 14.80 4.45 41.73 2.71
2137 2624 8.458573 AAATAACAGTACTTCACAATTCCACA 57.541 30.769 0.00 0.00 0.00 4.17
2139 2626 5.751243 ACAGTACTTCACAATTCCACAAC 57.249 39.130 0.00 0.00 0.00 3.32
2143 3279 5.827797 AGTACTTCACAATTCCACAACACAT 59.172 36.000 0.00 0.00 0.00 3.21
2145 3281 6.707440 ACTTCACAATTCCACAACACATAA 57.293 33.333 0.00 0.00 0.00 1.90
2153 3289 8.470805 ACAATTCCACAACACATAAACTACAAA 58.529 29.630 0.00 0.00 0.00 2.83
2157 3293 5.009610 CCACAACACATAAACTACAAAGGCT 59.990 40.000 0.00 0.00 0.00 4.58
2160 3296 5.121221 ACACATAAACTACAAAGGCTTGC 57.879 39.130 0.00 0.00 35.84 4.01
2165 3301 7.698130 CACATAAACTACAAAGGCTTGCTTATC 59.302 37.037 0.00 0.00 35.84 1.75
2172 3308 4.098501 ACAAAGGCTTGCTTATCCTAATGC 59.901 41.667 0.00 0.00 35.84 3.56
2189 3325 9.935241 ATCCTAATGCTACACATATTACTTCTG 57.065 33.333 0.00 0.00 38.34 3.02
2197 3333 7.710907 GCTACACATATTACTTCTGAATGACCA 59.289 37.037 0.00 0.00 0.00 4.02
2199 3335 6.823689 ACACATATTACTTCTGAATGACCACC 59.176 38.462 0.00 0.00 0.00 4.61
2206 3342 1.354368 TCTGAATGACCACCTTTCCCC 59.646 52.381 0.00 0.00 0.00 4.81
2208 3344 0.679960 GAATGACCACCTTTCCCCGG 60.680 60.000 0.00 0.00 0.00 5.73
2221 3357 0.109723 TCCCCGGAAGAACAGTTTGG 59.890 55.000 0.73 0.00 0.00 3.28
2234 3370 9.691362 GAAGAACAGTTTGGAGCAAATTAATTA 57.309 29.630 0.01 0.00 35.74 1.40
2257 3393 4.400251 AGTGTCATTATCCAACAAGCATGG 59.600 41.667 0.00 0.00 39.41 3.66
2265 3401 2.086869 CCAACAAGCATGGAGAACGAT 58.913 47.619 0.00 0.00 40.56 3.73
2270 3406 4.184629 ACAAGCATGGAGAACGATAAGAC 58.815 43.478 0.00 0.00 0.00 3.01
2273 3409 3.449018 AGCATGGAGAACGATAAGACAGT 59.551 43.478 0.00 0.00 0.00 3.55
2279 3415 2.093973 AGAACGATAAGACAGTGCTGGG 60.094 50.000 4.11 0.00 34.19 4.45
2285 3421 0.109342 AAGACAGTGCTGGGGAGTTG 59.891 55.000 4.11 0.00 34.19 3.16
2322 3458 4.397481 TGCTTCTATGAGTGTGATGAGG 57.603 45.455 0.00 0.00 0.00 3.86
2329 3465 3.685139 TGAGTGTGATGAGGTTCCTTC 57.315 47.619 0.00 0.00 0.00 3.46
2332 3468 2.304180 AGTGTGATGAGGTTCCTTCCAG 59.696 50.000 0.00 0.00 0.00 3.86
2356 3492 4.225942 TCAACCTGGTTCAGATCAGCTAAT 59.774 41.667 9.62 0.00 32.44 1.73
2357 3493 4.148128 ACCTGGTTCAGATCAGCTAATG 57.852 45.455 0.00 0.00 32.44 1.90
2370 3506 3.774766 TCAGCTAATGGAGTTGGAGCTTA 59.225 43.478 0.00 0.00 41.48 3.09
2371 3507 4.225042 TCAGCTAATGGAGTTGGAGCTTAA 59.775 41.667 0.00 0.00 41.48 1.85
2372 3508 5.104360 TCAGCTAATGGAGTTGGAGCTTAAT 60.104 40.000 0.00 0.00 41.48 1.40
2375 3511 5.238214 GCTAATGGAGTTGGAGCTTAATGAG 59.762 44.000 0.00 0.00 0.00 2.90
2377 3513 4.908601 TGGAGTTGGAGCTTAATGAGAA 57.091 40.909 0.00 0.00 0.00 2.87
2379 3515 5.630121 TGGAGTTGGAGCTTAATGAGAAAA 58.370 37.500 0.00 0.00 0.00 2.29
2380 3516 6.068010 TGGAGTTGGAGCTTAATGAGAAAAA 58.932 36.000 0.00 0.00 0.00 1.94
2410 3546 9.588096 TCTAAAGAAAAAGGCTTCTAAGGAAAT 57.412 29.630 0.00 0.00 34.49 2.17
2412 3548 6.842437 AGAAAAAGGCTTCTAAGGAAATCC 57.158 37.500 0.00 0.00 33.81 3.01
2413 3549 6.314917 AGAAAAAGGCTTCTAAGGAAATCCA 58.685 36.000 0.00 0.00 34.49 3.41
2419 3555 3.876320 GCTTCTAAGGAAATCCAGAGCAG 59.124 47.826 1.67 0.00 38.89 4.24
2422 3558 1.376649 AAGGAAATCCAGAGCAGGGT 58.623 50.000 1.67 0.00 38.89 4.34
2500 3636 4.639135 TGACAGATGTAGAAGGTGATCG 57.361 45.455 0.00 0.00 0.00 3.69
2512 3648 0.461961 GGTGATCGTGAGGAAGAGGG 59.538 60.000 0.00 0.00 0.00 4.30
2513 3649 0.461961 GTGATCGTGAGGAAGAGGGG 59.538 60.000 0.00 0.00 0.00 4.79
2518 3654 2.041265 TGAGGAAGAGGGGGAGGC 59.959 66.667 0.00 0.00 0.00 4.70
2531 3667 1.485210 GGGGAGGCATAGGTGGACTAT 60.485 57.143 0.00 0.00 43.18 2.12
2548 3684 5.600069 TGGACTATGATGCTAGTGAGAATGT 59.400 40.000 0.00 0.00 32.11 2.71
2549 3685 6.098838 TGGACTATGATGCTAGTGAGAATGTT 59.901 38.462 0.00 0.00 32.11 2.71
2555 3691 6.104665 TGATGCTAGTGAGAATGTTGAAGAG 58.895 40.000 0.00 0.00 0.00 2.85
2556 3692 5.728637 TGCTAGTGAGAATGTTGAAGAGA 57.271 39.130 0.00 0.00 0.00 3.10
2557 3693 6.101650 TGCTAGTGAGAATGTTGAAGAGAA 57.898 37.500 0.00 0.00 0.00 2.87
2558 3694 6.705302 TGCTAGTGAGAATGTTGAAGAGAAT 58.295 36.000 0.00 0.00 0.00 2.40
2559 3695 6.592994 TGCTAGTGAGAATGTTGAAGAGAATG 59.407 38.462 0.00 0.00 0.00 2.67
2560 3696 6.036953 GCTAGTGAGAATGTTGAAGAGAATGG 59.963 42.308 0.00 0.00 0.00 3.16
2561 3697 4.699257 AGTGAGAATGTTGAAGAGAATGGC 59.301 41.667 0.00 0.00 0.00 4.40
2562 3698 4.699257 GTGAGAATGTTGAAGAGAATGGCT 59.301 41.667 0.00 0.00 0.00 4.75
2563 3699 4.940046 TGAGAATGTTGAAGAGAATGGCTC 59.060 41.667 0.00 0.00 44.29 4.70
2575 3711 4.577875 GAGAATGGCTCTGATTATCTGGG 58.422 47.826 0.00 0.00 40.61 4.45
2576 3712 4.237843 AGAATGGCTCTGATTATCTGGGA 58.762 43.478 3.07 0.00 31.12 4.37
2577 3713 4.850963 AGAATGGCTCTGATTATCTGGGAT 59.149 41.667 3.07 0.00 31.12 3.85
2578 3714 5.312708 AGAATGGCTCTGATTATCTGGGATT 59.687 40.000 3.07 0.00 31.12 3.01
2579 3715 6.503217 AGAATGGCTCTGATTATCTGGGATTA 59.497 38.462 3.07 0.00 31.12 1.75
2580 3716 5.752036 TGGCTCTGATTATCTGGGATTAG 57.248 43.478 3.07 0.00 0.00 1.73
2581 3717 5.406163 TGGCTCTGATTATCTGGGATTAGA 58.594 41.667 3.07 0.00 0.00 2.10
2582 3718 5.846164 TGGCTCTGATTATCTGGGATTAGAA 59.154 40.000 3.07 0.00 0.00 2.10
2583 3719 6.013898 TGGCTCTGATTATCTGGGATTAGAAG 60.014 42.308 3.07 0.00 0.00 2.85
2584 3720 6.405538 GCTCTGATTATCTGGGATTAGAAGG 58.594 44.000 3.07 0.00 0.00 3.46
2585 3721 6.013812 GCTCTGATTATCTGGGATTAGAAGGT 60.014 42.308 3.07 0.00 0.00 3.50
2586 3722 7.308450 TCTGATTATCTGGGATTAGAAGGTG 57.692 40.000 0.00 0.00 0.00 4.00
2587 3723 5.869579 TGATTATCTGGGATTAGAAGGTGC 58.130 41.667 0.00 0.00 0.00 5.01
2588 3724 5.369404 TGATTATCTGGGATTAGAAGGTGCA 59.631 40.000 0.00 0.00 0.00 4.57
2589 3725 3.853355 ATCTGGGATTAGAAGGTGCAG 57.147 47.619 0.00 0.00 0.00 4.41
2590 3726 2.832838 TCTGGGATTAGAAGGTGCAGA 58.167 47.619 0.00 0.00 0.00 4.26
2591 3727 2.768527 TCTGGGATTAGAAGGTGCAGAG 59.231 50.000 0.00 0.00 0.00 3.35
2592 3728 1.839994 TGGGATTAGAAGGTGCAGAGG 59.160 52.381 0.00 0.00 0.00 3.69
2593 3729 2.119495 GGGATTAGAAGGTGCAGAGGA 58.881 52.381 0.00 0.00 0.00 3.71
2594 3730 2.708325 GGGATTAGAAGGTGCAGAGGAT 59.292 50.000 0.00 0.00 0.00 3.24
2595 3731 3.904339 GGGATTAGAAGGTGCAGAGGATA 59.096 47.826 0.00 0.00 0.00 2.59
2596 3732 4.534103 GGGATTAGAAGGTGCAGAGGATAT 59.466 45.833 0.00 0.00 0.00 1.63
2597 3733 5.486526 GGATTAGAAGGTGCAGAGGATATG 58.513 45.833 0.00 0.00 0.00 1.78
2598 3734 4.963318 TTAGAAGGTGCAGAGGATATGG 57.037 45.455 0.00 0.00 0.00 2.74
2599 3735 3.051940 AGAAGGTGCAGAGGATATGGA 57.948 47.619 0.00 0.00 0.00 3.41
2600 3736 3.596101 AGAAGGTGCAGAGGATATGGAT 58.404 45.455 0.00 0.00 0.00 3.41
2601 3737 3.327172 AGAAGGTGCAGAGGATATGGATG 59.673 47.826 0.00 0.00 0.00 3.51
2602 3738 1.350351 AGGTGCAGAGGATATGGATGC 59.650 52.381 0.00 0.00 37.40 3.91
2603 3739 1.350351 GGTGCAGAGGATATGGATGCT 59.650 52.381 0.00 0.00 36.25 3.79
2604 3740 2.424557 GTGCAGAGGATATGGATGCTG 58.575 52.381 0.00 0.00 33.14 4.41
2605 3741 2.038164 GTGCAGAGGATATGGATGCTGA 59.962 50.000 0.00 0.00 33.14 4.26
2606 3742 2.302157 TGCAGAGGATATGGATGCTGAG 59.698 50.000 0.00 0.00 33.14 3.35
2607 3743 2.354906 GCAGAGGATATGGATGCTGAGG 60.355 54.545 0.00 0.00 33.14 3.86
2608 3744 1.907936 AGAGGATATGGATGCTGAGGC 59.092 52.381 0.00 0.00 33.14 4.70
2609 3745 1.907936 GAGGATATGGATGCTGAGGCT 59.092 52.381 0.00 0.00 33.14 4.58
2610 3746 2.305343 GAGGATATGGATGCTGAGGCTT 59.695 50.000 0.00 0.00 33.14 4.35
2611 3747 3.517100 GAGGATATGGATGCTGAGGCTTA 59.483 47.826 0.00 0.00 33.14 3.09
2612 3748 4.110072 AGGATATGGATGCTGAGGCTTAT 58.890 43.478 0.00 0.00 39.59 1.73
2613 3749 4.080469 AGGATATGGATGCTGAGGCTTATG 60.080 45.833 0.00 0.00 39.59 1.90
2614 3750 1.906990 ATGGATGCTGAGGCTTATGC 58.093 50.000 0.00 0.00 39.59 3.14
2632 3768 8.976986 GCTTATGCCATGAATTTAGGATTTAG 57.023 34.615 0.00 0.00 0.00 1.85
2633 3769 8.031277 GCTTATGCCATGAATTTAGGATTTAGG 58.969 37.037 0.00 0.00 0.00 2.69
2634 3770 9.300681 CTTATGCCATGAATTTAGGATTTAGGA 57.699 33.333 0.00 0.00 0.00 2.94
2635 3771 9.827198 TTATGCCATGAATTTAGGATTTAGGAT 57.173 29.630 0.00 0.00 0.00 3.24
2637 3773 8.868522 TGCCATGAATTTAGGATTTAGGATAG 57.131 34.615 0.00 0.00 0.00 2.08
2638 3774 8.668653 TGCCATGAATTTAGGATTTAGGATAGA 58.331 33.333 0.00 0.00 0.00 1.98
2639 3775 9.520515 GCCATGAATTTAGGATTTAGGATAGAA 57.479 33.333 0.00 0.00 0.00 2.10
2648 3784 9.947189 TTAGGATTTAGGATAGAAGTTACCAGA 57.053 33.333 0.00 0.00 0.00 3.86
2649 3785 8.485578 AGGATTTAGGATAGAAGTTACCAGAG 57.514 38.462 0.00 0.00 0.00 3.35
2650 3786 8.290277 AGGATTTAGGATAGAAGTTACCAGAGA 58.710 37.037 0.00 0.00 0.00 3.10
2651 3787 9.095700 GGATTTAGGATAGAAGTTACCAGAGAT 57.904 37.037 0.00 0.00 0.00 2.75
2652 3788 9.921637 GATTTAGGATAGAAGTTACCAGAGATG 57.078 37.037 0.00 0.00 0.00 2.90
2653 3789 9.661954 ATTTAGGATAGAAGTTACCAGAGATGA 57.338 33.333 0.00 0.00 0.00 2.92
2654 3790 9.488762 TTTAGGATAGAAGTTACCAGAGATGAA 57.511 33.333 0.00 0.00 0.00 2.57
2655 3791 7.354751 AGGATAGAAGTTACCAGAGATGAAC 57.645 40.000 0.00 0.00 0.00 3.18
2656 3792 6.039941 AGGATAGAAGTTACCAGAGATGAACG 59.960 42.308 0.00 0.00 0.00 3.95
2657 3793 6.039493 GGATAGAAGTTACCAGAGATGAACGA 59.961 42.308 0.00 0.00 0.00 3.85
2658 3794 5.723672 AGAAGTTACCAGAGATGAACGAA 57.276 39.130 0.00 0.00 0.00 3.85
2659 3795 5.715070 AGAAGTTACCAGAGATGAACGAAG 58.285 41.667 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067706 TCCGAATCCGACGTTTAGCAA 60.068 47.619 0.00 0.00 38.22 3.91
1 2 0.527113 TCCGAATCCGACGTTTAGCA 59.473 50.000 0.00 0.00 38.22 3.49
2 3 1.521423 CATCCGAATCCGACGTTTAGC 59.479 52.381 0.00 0.00 38.22 3.09
3 4 2.805845 ACATCCGAATCCGACGTTTAG 58.194 47.619 0.00 0.00 38.22 1.85
4 5 2.945447 ACATCCGAATCCGACGTTTA 57.055 45.000 0.00 0.00 38.22 2.01
5 6 2.088950 AACATCCGAATCCGACGTTT 57.911 45.000 0.00 0.00 38.22 3.60
6 7 1.997606 GAAACATCCGAATCCGACGTT 59.002 47.619 0.00 0.00 38.22 3.99
7 8 1.203994 AGAAACATCCGAATCCGACGT 59.796 47.619 0.00 0.00 38.22 4.34
8 9 1.852895 GAGAAACATCCGAATCCGACG 59.147 52.381 0.00 0.00 38.22 5.12
9 10 2.860735 CAGAGAAACATCCGAATCCGAC 59.139 50.000 0.00 0.00 38.22 4.79
10 11 2.738643 GCAGAGAAACATCCGAATCCGA 60.739 50.000 0.00 0.00 38.22 4.55
11 12 1.594862 GCAGAGAAACATCCGAATCCG 59.405 52.381 0.00 0.00 0.00 4.18
12 13 2.632377 TGCAGAGAAACATCCGAATCC 58.368 47.619 0.00 0.00 0.00 3.01
13 14 4.465040 GATGCAGAGAAACATCCGAATC 57.535 45.455 0.00 0.00 37.33 2.52
19 20 3.426695 CGGTTTGGATGCAGAGAAACATC 60.427 47.826 15.28 0.00 41.60 3.06
20 21 2.489329 CGGTTTGGATGCAGAGAAACAT 59.511 45.455 15.28 0.00 31.25 2.71
21 22 1.879380 CGGTTTGGATGCAGAGAAACA 59.121 47.619 15.28 0.00 31.25 2.83
22 23 2.095718 GTCGGTTTGGATGCAGAGAAAC 60.096 50.000 8.15 8.15 0.00 2.78
23 24 2.151202 GTCGGTTTGGATGCAGAGAAA 58.849 47.619 0.00 0.00 0.00 2.52
24 25 1.610624 GGTCGGTTTGGATGCAGAGAA 60.611 52.381 0.00 0.00 0.00 2.87
25 26 0.036388 GGTCGGTTTGGATGCAGAGA 60.036 55.000 0.00 0.00 0.00 3.10
26 27 1.361668 CGGTCGGTTTGGATGCAGAG 61.362 60.000 0.00 0.00 0.00 3.35
27 28 1.375396 CGGTCGGTTTGGATGCAGA 60.375 57.895 0.00 0.00 0.00 4.26
28 29 1.361668 CTCGGTCGGTTTGGATGCAG 61.362 60.000 0.00 0.00 0.00 4.41
29 30 1.375396 CTCGGTCGGTTTGGATGCA 60.375 57.895 0.00 0.00 0.00 3.96
30 31 1.079405 TCTCGGTCGGTTTGGATGC 60.079 57.895 0.00 0.00 0.00 3.91
31 32 0.246635 ACTCTCGGTCGGTTTGGATG 59.753 55.000 0.00 0.00 0.00 3.51
32 33 0.974383 AACTCTCGGTCGGTTTGGAT 59.026 50.000 0.00 0.00 0.00 3.41
33 34 0.032952 CAACTCTCGGTCGGTTTGGA 59.967 55.000 0.00 0.00 0.00 3.53
34 35 1.566018 GCAACTCTCGGTCGGTTTGG 61.566 60.000 0.00 0.00 0.00 3.28
35 36 0.600255 AGCAACTCTCGGTCGGTTTG 60.600 55.000 0.00 0.00 0.00 2.93
36 37 0.319641 GAGCAACTCTCGGTCGGTTT 60.320 55.000 0.00 0.00 31.20 3.27
37 38 1.289380 GAGCAACTCTCGGTCGGTT 59.711 57.895 0.00 0.00 31.20 4.44
38 39 2.637383 GGAGCAACTCTCGGTCGGT 61.637 63.158 0.00 0.00 42.82 4.69
39 40 2.182030 GGAGCAACTCTCGGTCGG 59.818 66.667 0.00 0.00 42.82 4.79
40 41 2.182030 GGGAGCAACTCTCGGTCG 59.818 66.667 0.00 0.00 42.82 4.79
41 42 1.079750 GTGGGAGCAACTCTCGGTC 60.080 63.158 0.00 0.00 42.82 4.79
42 43 1.194781 ATGTGGGAGCAACTCTCGGT 61.195 55.000 0.00 0.00 42.82 4.69
43 44 0.824109 TATGTGGGAGCAACTCTCGG 59.176 55.000 0.00 0.00 42.82 4.63
44 45 1.478510 AGTATGTGGGAGCAACTCTCG 59.521 52.381 0.00 0.00 42.82 4.04
45 46 2.419297 CCAGTATGTGGGAGCAACTCTC 60.419 54.545 0.00 0.00 43.63 3.20
46 47 1.556911 CCAGTATGTGGGAGCAACTCT 59.443 52.381 0.00 0.00 43.63 3.24
47 48 2.029838 CCAGTATGTGGGAGCAACTC 57.970 55.000 0.00 0.00 43.63 3.01
65 66 2.229543 TCTTGACATGTTTGATGCTGCC 59.770 45.455 0.00 0.00 0.00 4.85
266 279 2.433664 GTTCCCGGCGTGACGAAT 60.434 61.111 10.10 0.00 35.47 3.34
281 294 4.035102 GCGAGAGGCCTTGGGGTT 62.035 66.667 6.77 0.00 34.80 4.11
674 696 4.047059 TCCACGAGGACGGCGTTC 62.047 66.667 16.19 13.64 44.46 3.95
918 940 2.235891 TGCACGATGACCCGTAGATAT 58.764 47.619 0.00 0.00 41.29 1.63
931 953 0.179045 GCCTCCTGGTTATGCACGAT 60.179 55.000 0.00 0.00 35.27 3.73
992 1014 1.085091 GTGAGCTTGCATGAGACTGG 58.915 55.000 3.33 0.00 0.00 4.00
1119 1141 2.291043 CGGCTTGGTACCCCTGTCT 61.291 63.158 10.07 0.00 0.00 3.41
1140 1162 1.727335 GACTTGGCTTTCACGTAGCTC 59.273 52.381 8.60 0.58 38.67 4.09
1193 1451 1.222936 GTCCATGTGCTCTCCCAGG 59.777 63.158 0.00 0.00 0.00 4.45
1329 1590 4.017407 TCAGACCAGGAGGAGTAGTATTGT 60.017 45.833 0.00 0.00 38.69 2.71
1443 1704 4.024670 GGTCTCTGTAGTTCACATACCCT 58.975 47.826 0.00 0.00 36.29 4.34
1602 1866 2.773661 TGGGATGCTCTGCTCATTTCTA 59.226 45.455 0.00 0.00 0.00 2.10
1702 1966 2.061028 GCCACGCTCAAATCCTTTTTG 58.939 47.619 0.00 0.00 0.00 2.44
1717 1982 1.405105 CCATCCCAAATAACAGCCACG 59.595 52.381 0.00 0.00 0.00 4.94
1739 2004 7.983307 GTCTTTCAAAAGAGCACATATCTGAT 58.017 34.615 5.45 0.00 45.01 2.90
1773 2039 6.672266 ATACCATCTAATCATCACGGACTT 57.328 37.500 0.00 0.00 0.00 3.01
1881 2256 6.963322 AGGAAAATGGGCACTCCTATATATC 58.037 40.000 0.00 0.00 36.51 1.63
1894 2272 2.167075 CAGGAACATGAGGAAAATGGGC 59.833 50.000 0.00 0.00 0.00 5.36
1899 2277 3.228188 ACTGCAGGAACATGAGGAAAA 57.772 42.857 19.93 0.00 0.00 2.29
1903 2281 2.507484 TCAAACTGCAGGAACATGAGG 58.493 47.619 19.93 0.00 0.00 3.86
1930 2308 9.656040 TTAACTTGTAACTCAAAAGAGTACACA 57.344 29.630 0.00 4.16 35.48 3.72
1935 2313 9.227777 ACTTGTTAACTTGTAACTCAAAAGAGT 57.772 29.630 7.22 0.00 35.48 3.24
1940 2318 9.757859 CGTTAACTTGTTAACTTGTAACTCAAA 57.242 29.630 24.64 0.00 35.75 2.69
1948 2326 5.430886 AGACCCGTTAACTTGTTAACTTGT 58.569 37.500 24.64 21.39 35.75 3.16
1949 2327 5.996669 AGACCCGTTAACTTGTTAACTTG 57.003 39.130 24.64 19.33 35.75 3.16
1950 2328 5.698089 GCTAGACCCGTTAACTTGTTAACTT 59.302 40.000 24.64 14.19 35.75 2.66
1951 2329 5.221501 TGCTAGACCCGTTAACTTGTTAACT 60.222 40.000 24.64 12.82 35.75 2.24
1952 2330 4.990426 TGCTAGACCCGTTAACTTGTTAAC 59.010 41.667 20.32 20.32 34.84 2.01
1953 2331 4.990426 GTGCTAGACCCGTTAACTTGTTAA 59.010 41.667 3.71 2.22 0.00 2.01
1954 2332 4.559153 GTGCTAGACCCGTTAACTTGTTA 58.441 43.478 3.71 0.00 0.00 2.41
1955 2333 3.396560 GTGCTAGACCCGTTAACTTGTT 58.603 45.455 3.71 0.00 0.00 2.83
1981 2463 0.599558 CGACGGACTGGAGGTTAACA 59.400 55.000 8.10 0.00 0.00 2.41
1983 2465 1.171308 CTCGACGGACTGGAGGTTAA 58.829 55.000 0.00 0.00 0.00 2.01
1996 2478 1.012841 GTGTAGACTACCCCTCGACG 58.987 60.000 10.14 0.00 0.00 5.12
1999 2481 2.015587 GTCAGTGTAGACTACCCCTCG 58.984 57.143 10.14 2.64 35.65 4.63
2020 2504 2.181777 GTCTGTGATCGCTCGCCA 59.818 61.111 7.94 0.00 0.00 5.69
2024 2508 0.805322 CTGCCAGTCTGTGATCGCTC 60.805 60.000 7.94 0.00 0.00 5.03
2055 2539 0.773644 ATGGGCAGAACCAGTGACTT 59.226 50.000 0.00 0.00 45.20 3.01
2122 2609 6.707440 TTATGTGTTGTGGAATTGTGAAGT 57.293 33.333 0.00 0.00 0.00 3.01
2124 2611 7.106439 AGTTTATGTGTTGTGGAATTGTGAA 57.894 32.000 0.00 0.00 0.00 3.18
2126 2613 7.421599 TGTAGTTTATGTGTTGTGGAATTGTG 58.578 34.615 0.00 0.00 0.00 3.33
2127 2614 7.575414 TGTAGTTTATGTGTTGTGGAATTGT 57.425 32.000 0.00 0.00 0.00 2.71
2128 2615 8.864069 TTTGTAGTTTATGTGTTGTGGAATTG 57.136 30.769 0.00 0.00 0.00 2.32
2129 2616 8.141268 CCTTTGTAGTTTATGTGTTGTGGAATT 58.859 33.333 0.00 0.00 0.00 2.17
2130 2617 7.657336 CCTTTGTAGTTTATGTGTTGTGGAAT 58.343 34.615 0.00 0.00 0.00 3.01
2131 2618 6.460399 GCCTTTGTAGTTTATGTGTTGTGGAA 60.460 38.462 0.00 0.00 0.00 3.53
2132 2619 5.009210 GCCTTTGTAGTTTATGTGTTGTGGA 59.991 40.000 0.00 0.00 0.00 4.02
2133 2620 5.009610 AGCCTTTGTAGTTTATGTGTTGTGG 59.990 40.000 0.00 0.00 0.00 4.17
2134 2621 6.072112 AGCCTTTGTAGTTTATGTGTTGTG 57.928 37.500 0.00 0.00 0.00 3.33
2136 2623 5.402270 GCAAGCCTTTGTAGTTTATGTGTTG 59.598 40.000 0.00 0.00 36.65 3.33
2137 2624 5.301805 AGCAAGCCTTTGTAGTTTATGTGTT 59.698 36.000 0.00 0.00 36.65 3.32
2139 2626 5.376854 AGCAAGCCTTTGTAGTTTATGTG 57.623 39.130 0.00 0.00 36.65 3.21
2143 3279 6.481643 AGGATAAGCAAGCCTTTGTAGTTTA 58.518 36.000 0.00 0.00 36.65 2.01
2145 3281 4.923415 AGGATAAGCAAGCCTTTGTAGTT 58.077 39.130 0.00 0.00 36.65 2.24
2153 3289 3.872459 AGCATTAGGATAAGCAAGCCT 57.128 42.857 1.29 1.29 35.82 4.58
2165 3301 9.764363 TTCAGAAGTAATATGTGTAGCATTAGG 57.236 33.333 0.00 0.00 38.94 2.69
2172 3308 9.035607 GTGGTCATTCAGAAGTAATATGTGTAG 57.964 37.037 0.00 0.00 0.00 2.74
2188 3324 0.037590 CGGGGAAAGGTGGTCATTCA 59.962 55.000 0.00 0.00 0.00 2.57
2189 3325 0.679960 CCGGGGAAAGGTGGTCATTC 60.680 60.000 0.00 0.00 0.00 2.67
2197 3333 0.400594 CTGTTCTTCCGGGGAAAGGT 59.599 55.000 0.00 0.00 33.34 3.50
2199 3335 2.271944 AACTGTTCTTCCGGGGAAAG 57.728 50.000 0.00 0.00 33.34 2.62
2206 3342 1.593196 TGCTCCAAACTGTTCTTCCG 58.407 50.000 0.00 0.00 0.00 4.30
2208 3344 8.593492 AATTAATTTGCTCCAAACTGTTCTTC 57.407 30.769 0.00 0.00 36.13 2.87
2234 3370 4.400251 CCATGCTTGTTGGATAATGACACT 59.600 41.667 0.00 0.00 36.26 3.55
2243 3379 2.086869 CGTTCTCCATGCTTGTTGGAT 58.913 47.619 0.00 0.00 42.26 3.41
2248 3384 4.184629 GTCTTATCGTTCTCCATGCTTGT 58.815 43.478 0.00 0.00 0.00 3.16
2257 3393 3.182967 CCAGCACTGTCTTATCGTTCTC 58.817 50.000 0.00 0.00 0.00 2.87
2262 3398 0.824109 TCCCCAGCACTGTCTTATCG 59.176 55.000 0.00 0.00 0.00 2.92
2265 3401 1.347707 CAACTCCCCAGCACTGTCTTA 59.652 52.381 0.00 0.00 0.00 2.10
2270 3406 0.466189 AACACAACTCCCCAGCACTG 60.466 55.000 0.00 0.00 0.00 3.66
2273 3409 1.150536 GGAACACAACTCCCCAGCA 59.849 57.895 0.00 0.00 0.00 4.41
2279 3415 3.140325 TGGATTGAGGAACACAACTCC 57.860 47.619 0.00 0.00 42.44 3.85
2285 3421 3.760684 AGAAGCAATGGATTGAGGAACAC 59.239 43.478 3.47 0.00 40.14 3.32
2332 3468 2.079925 GCTGATCTGAACCAGGTTGAC 58.920 52.381 10.47 0.00 31.51 3.18
2344 3480 4.378774 CTCCAACTCCATTAGCTGATCTG 58.621 47.826 0.00 0.00 0.00 2.90
2345 3481 3.181456 GCTCCAACTCCATTAGCTGATCT 60.181 47.826 0.00 0.00 0.00 2.75
2346 3482 3.137533 GCTCCAACTCCATTAGCTGATC 58.862 50.000 0.00 0.00 0.00 2.92
2347 3483 2.776536 AGCTCCAACTCCATTAGCTGAT 59.223 45.455 0.00 0.00 41.78 2.90
2348 3484 2.191400 AGCTCCAACTCCATTAGCTGA 58.809 47.619 0.00 0.00 41.78 4.26
2356 3492 4.908601 TTCTCATTAAGCTCCAACTCCA 57.091 40.909 0.00 0.00 0.00 3.86
2357 3493 6.575162 TTTTTCTCATTAAGCTCCAACTCC 57.425 37.500 0.00 0.00 0.00 3.85
2381 3517 9.588096 TCCTTAGAAGCCTTTTTCTTTAGAATT 57.412 29.630 0.00 0.00 38.35 2.17
2382 3518 9.588096 TTCCTTAGAAGCCTTTTTCTTTAGAAT 57.412 29.630 0.00 0.00 38.35 2.40
2384 3520 8.990163 TTTCCTTAGAAGCCTTTTTCTTTAGA 57.010 30.769 0.00 0.00 38.35 2.10
2402 3538 2.562296 ACCCTGCTCTGGATTTCCTTA 58.438 47.619 0.00 0.00 36.82 2.69
2410 3546 3.719871 TCAAACTATACCCTGCTCTGGA 58.280 45.455 0.00 0.00 0.00 3.86
2412 3548 4.192317 GGTTCAAACTATACCCTGCTCTG 58.808 47.826 0.00 0.00 0.00 3.35
2413 3549 3.844211 TGGTTCAAACTATACCCTGCTCT 59.156 43.478 0.00 0.00 0.00 4.09
2419 3555 3.939592 GCAGACTGGTTCAAACTATACCC 59.060 47.826 4.26 0.00 0.00 3.69
2422 3558 5.480422 TCTCAGCAGACTGGTTCAAACTATA 59.520 40.000 3.93 0.00 44.59 1.31
2463 3599 8.255111 ACATCTGTCATATTTGTATCCAGAGA 57.745 34.615 0.00 0.00 31.68 3.10
2486 3622 3.081710 TCCTCACGATCACCTTCTACA 57.918 47.619 0.00 0.00 0.00 2.74
2500 3636 2.371259 GCCTCCCCCTCTTCCTCAC 61.371 68.421 0.00 0.00 0.00 3.51
2512 3648 1.625818 CATAGTCCACCTATGCCTCCC 59.374 57.143 0.00 0.00 44.85 4.30
2531 3667 6.041423 TCTTCAACATTCTCACTAGCATCA 57.959 37.500 0.00 0.00 0.00 3.07
2536 3672 6.036953 GCCATTCTCTTCAACATTCTCACTAG 59.963 42.308 0.00 0.00 0.00 2.57
2537 3673 5.877012 GCCATTCTCTTCAACATTCTCACTA 59.123 40.000 0.00 0.00 0.00 2.74
2555 3691 4.630644 TCCCAGATAATCAGAGCCATTC 57.369 45.455 0.00 0.00 0.00 2.67
2556 3692 5.595814 AATCCCAGATAATCAGAGCCATT 57.404 39.130 0.00 0.00 0.00 3.16
2557 3693 6.028131 TCTAATCCCAGATAATCAGAGCCAT 58.972 40.000 0.00 0.00 0.00 4.40
2558 3694 5.406163 TCTAATCCCAGATAATCAGAGCCA 58.594 41.667 0.00 0.00 0.00 4.75
2559 3695 6.365970 TTCTAATCCCAGATAATCAGAGCC 57.634 41.667 0.00 0.00 0.00 4.70
2560 3696 6.013812 ACCTTCTAATCCCAGATAATCAGAGC 60.014 42.308 0.00 0.00 0.00 4.09
2561 3697 7.385267 CACCTTCTAATCCCAGATAATCAGAG 58.615 42.308 0.00 0.00 0.00 3.35
2562 3698 6.239714 GCACCTTCTAATCCCAGATAATCAGA 60.240 42.308 0.00 0.00 0.00 3.27
2563 3699 5.936956 GCACCTTCTAATCCCAGATAATCAG 59.063 44.000 0.00 0.00 0.00 2.90
2564 3700 5.369404 TGCACCTTCTAATCCCAGATAATCA 59.631 40.000 0.00 0.00 0.00 2.57
2565 3701 5.869579 TGCACCTTCTAATCCCAGATAATC 58.130 41.667 0.00 0.00 0.00 1.75
2566 3702 5.608437 TCTGCACCTTCTAATCCCAGATAAT 59.392 40.000 0.00 0.00 0.00 1.28
2567 3703 4.968719 TCTGCACCTTCTAATCCCAGATAA 59.031 41.667 0.00 0.00 0.00 1.75
2568 3704 4.556697 TCTGCACCTTCTAATCCCAGATA 58.443 43.478 0.00 0.00 0.00 1.98
2569 3705 3.387962 TCTGCACCTTCTAATCCCAGAT 58.612 45.455 0.00 0.00 0.00 2.90
2570 3706 2.768527 CTCTGCACCTTCTAATCCCAGA 59.231 50.000 0.00 0.00 0.00 3.86
2571 3707 2.158842 CCTCTGCACCTTCTAATCCCAG 60.159 54.545 0.00 0.00 0.00 4.45
2572 3708 1.839994 CCTCTGCACCTTCTAATCCCA 59.160 52.381 0.00 0.00 0.00 4.37
2573 3709 2.119495 TCCTCTGCACCTTCTAATCCC 58.881 52.381 0.00 0.00 0.00 3.85
2574 3710 5.486526 CATATCCTCTGCACCTTCTAATCC 58.513 45.833 0.00 0.00 0.00 3.01
2575 3711 5.247110 TCCATATCCTCTGCACCTTCTAATC 59.753 44.000 0.00 0.00 0.00 1.75
2576 3712 5.158141 TCCATATCCTCTGCACCTTCTAAT 58.842 41.667 0.00 0.00 0.00 1.73
2577 3713 4.556697 TCCATATCCTCTGCACCTTCTAA 58.443 43.478 0.00 0.00 0.00 2.10
2578 3714 4.199002 TCCATATCCTCTGCACCTTCTA 57.801 45.455 0.00 0.00 0.00 2.10
2579 3715 3.051940 TCCATATCCTCTGCACCTTCT 57.948 47.619 0.00 0.00 0.00 2.85
2580 3716 3.672808 CATCCATATCCTCTGCACCTTC 58.327 50.000 0.00 0.00 0.00 3.46
2581 3717 2.224719 GCATCCATATCCTCTGCACCTT 60.225 50.000 0.00 0.00 33.13 3.50
2582 3718 1.350351 GCATCCATATCCTCTGCACCT 59.650 52.381 0.00 0.00 33.13 4.00
2583 3719 1.350351 AGCATCCATATCCTCTGCACC 59.650 52.381 0.00 0.00 35.32 5.01
2584 3720 2.038164 TCAGCATCCATATCCTCTGCAC 59.962 50.000 0.00 0.00 35.32 4.57
2585 3721 2.302157 CTCAGCATCCATATCCTCTGCA 59.698 50.000 0.00 0.00 35.32 4.41
2586 3722 2.354906 CCTCAGCATCCATATCCTCTGC 60.355 54.545 0.00 0.00 0.00 4.26
2587 3723 2.354906 GCCTCAGCATCCATATCCTCTG 60.355 54.545 0.00 0.00 39.53 3.35
2588 3724 1.907936 GCCTCAGCATCCATATCCTCT 59.092 52.381 0.00 0.00 39.53 3.69
2589 3725 1.907936 AGCCTCAGCATCCATATCCTC 59.092 52.381 0.00 0.00 43.56 3.71
2590 3726 2.041824 AGCCTCAGCATCCATATCCT 57.958 50.000 0.00 0.00 43.56 3.24
2591 3727 2.875094 AAGCCTCAGCATCCATATCC 57.125 50.000 0.00 0.00 43.56 2.59
2592 3728 3.626670 GCATAAGCCTCAGCATCCATATC 59.373 47.826 0.00 0.00 43.56 1.63
2593 3729 3.618351 GCATAAGCCTCAGCATCCATAT 58.382 45.455 0.00 0.00 43.56 1.78
2594 3730 3.063510 GCATAAGCCTCAGCATCCATA 57.936 47.619 0.00 0.00 43.56 2.74
2595 3731 1.906990 GCATAAGCCTCAGCATCCAT 58.093 50.000 0.00 0.00 43.56 3.41
2596 3732 3.409201 GCATAAGCCTCAGCATCCA 57.591 52.632 0.00 0.00 43.56 3.41
2607 3743 8.031277 CCTAAATCCTAAATTCATGGCATAAGC 58.969 37.037 0.00 0.00 41.10 3.09
2608 3744 9.300681 TCCTAAATCCTAAATTCATGGCATAAG 57.699 33.333 0.00 0.00 0.00 1.73
2609 3745 9.827198 ATCCTAAATCCTAAATTCATGGCATAA 57.173 29.630 0.00 0.00 0.00 1.90
2611 3747 9.471702 CTATCCTAAATCCTAAATTCATGGCAT 57.528 33.333 0.00 0.00 0.00 4.40
2612 3748 8.668653 TCTATCCTAAATCCTAAATTCATGGCA 58.331 33.333 0.00 0.00 0.00 4.92
2613 3749 9.520515 TTCTATCCTAAATCCTAAATTCATGGC 57.479 33.333 0.00 0.00 0.00 4.40
2622 3758 9.947189 TCTGGTAACTTCTATCCTAAATCCTAA 57.053 33.333 0.00 0.00 37.61 2.69
2623 3759 9.589461 CTCTGGTAACTTCTATCCTAAATCCTA 57.411 37.037 0.00 0.00 37.61 2.94
2624 3760 8.290277 TCTCTGGTAACTTCTATCCTAAATCCT 58.710 37.037 0.00 0.00 37.61 3.24
2625 3761 8.480133 TCTCTGGTAACTTCTATCCTAAATCC 57.520 38.462 0.00 0.00 37.61 3.01
2626 3762 9.921637 CATCTCTGGTAACTTCTATCCTAAATC 57.078 37.037 0.00 0.00 37.61 2.17
2627 3763 9.661954 TCATCTCTGGTAACTTCTATCCTAAAT 57.338 33.333 0.00 0.00 37.61 1.40
2628 3764 9.488762 TTCATCTCTGGTAACTTCTATCCTAAA 57.511 33.333 0.00 0.00 37.61 1.85
2629 3765 8.915036 GTTCATCTCTGGTAACTTCTATCCTAA 58.085 37.037 0.00 0.00 37.61 2.69
2630 3766 7.228906 CGTTCATCTCTGGTAACTTCTATCCTA 59.771 40.741 0.00 0.00 37.61 2.94
2631 3767 6.039941 CGTTCATCTCTGGTAACTTCTATCCT 59.960 42.308 0.00 0.00 37.61 3.24
2632 3768 6.039493 TCGTTCATCTCTGGTAACTTCTATCC 59.961 42.308 0.00 0.00 37.61 2.59
2633 3769 7.028926 TCGTTCATCTCTGGTAACTTCTATC 57.971 40.000 0.00 0.00 37.61 2.08
2634 3770 7.406031 TTCGTTCATCTCTGGTAACTTCTAT 57.594 36.000 0.00 0.00 37.61 1.98
2635 3771 6.829229 TTCGTTCATCTCTGGTAACTTCTA 57.171 37.500 0.00 0.00 37.61 2.10
2636 3772 5.715070 CTTCGTTCATCTCTGGTAACTTCT 58.285 41.667 0.00 0.00 37.61 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.