Multiple sequence alignment - TraesCS7A01G353300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G353300 chr7A 100.000 2658 0 0 1 2658 516999221 516996564 0.000000e+00 4909.0
1 TraesCS7A01G353300 chr7A 82.975 2138 195 86 294 2350 517415525 517413476 0.000000e+00 1775.0
2 TraesCS7A01G353300 chr7A 78.062 1094 203 29 1086 2173 516990181 516989119 0.000000e+00 656.0
3 TraesCS7A01G353300 chr7A 100.000 293 0 0 2890 3182 516996332 516996040 2.790000e-150 542.0
4 TraesCS7A01G353300 chr7A 78.508 563 91 28 1626 2170 670946630 670946080 3.040000e-90 342.0
5 TraesCS7A01G353300 chr7A 86.392 316 29 6 2342 2653 517413255 517412950 1.830000e-87 333.0
6 TraesCS7A01G353300 chr7A 91.765 85 6 1 77 161 517416821 517416738 2.010000e-22 117.0
7 TraesCS7A01G353300 chr7A 89.247 93 9 1 2890 2982 427837860 427837951 7.210000e-22 115.0
8 TraesCS7A01G353300 chr7A 92.000 75 6 0 179 253 517416566 517416492 4.340000e-19 106.0
9 TraesCS7A01G353300 chr7A 92.308 52 2 2 3089 3138 318767146 318767197 4.400000e-09 73.1
10 TraesCS7A01G353300 chr7D 88.014 2261 165 54 182 2403 478573405 478571212 0.000000e+00 2577.0
11 TraesCS7A01G353300 chr7D 85.287 2440 210 95 251 2574 478326761 478329167 0.000000e+00 2379.0
12 TraesCS7A01G353300 chr7D 82.815 547 90 4 1627 2171 478333872 478334416 1.330000e-133 486.0
13 TraesCS7A01G353300 chr7D 76.709 395 65 21 1131 1515 478370402 478370779 9.010000e-46 195.0
14 TraesCS7A01G353300 chr7D 80.711 197 18 14 2397 2578 478569929 478569738 5.540000e-28 135.0
15 TraesCS7A01G353300 chr7B 89.870 1303 86 25 1312 2576 503472868 503474162 0.000000e+00 1633.0
16 TraesCS7A01G353300 chr7B 91.395 674 42 7 1315 1977 504244326 504243658 0.000000e+00 909.0
17 TraesCS7A01G353300 chr7B 79.253 1258 133 71 68 1244 503471554 503472764 0.000000e+00 760.0
18 TraesCS7A01G353300 chr7B 92.582 364 18 3 1973 2336 504237787 504237433 6.090000e-142 514.0
19 TraesCS7A01G353300 chr7B 81.547 569 42 30 680 1248 504244935 504244430 8.210000e-111 411.0
20 TraesCS7A01G353300 chr7B 77.800 509 87 24 1626 2118 643295732 643295234 1.120000e-74 291.0
21 TraesCS7A01G353300 chr7B 82.938 211 26 6 179 379 504246332 504246122 7.010000e-42 182.0
22 TraesCS7A01G353300 chr7B 93.548 62 3 1 2369 2429 375543317 375543378 1.220000e-14 91.6
23 TraesCS7A01G353300 chr7B 92.000 50 2 2 3089 3136 49192592 49192641 5.700000e-08 69.4
24 TraesCS7A01G353300 chr6D 77.114 402 73 16 1123 1515 90922746 90923137 6.910000e-52 215.0
25 TraesCS7A01G353300 chr3A 84.466 206 32 0 1320 1525 113922263 113922058 1.500000e-48 204.0
26 TraesCS7A01G353300 chr6B 84.264 197 29 2 1320 1515 173391988 173392183 1.170000e-44 191.0
27 TraesCS7A01G353300 chr6B 89.630 135 10 2 2299 2429 591329477 591329611 5.460000e-38 169.0
28 TraesCS7A01G353300 chr6B 87.255 102 13 0 1123 1224 173391805 173391906 2.010000e-22 117.0
29 TraesCS7A01G353300 chr6A 84.184 196 31 0 1320 1515 109135964 109136159 1.170000e-44 191.0
30 TraesCS7A01G353300 chr6A 85.294 102 15 0 1123 1224 109135768 109135869 4.340000e-19 106.0
31 TraesCS7A01G353300 chr4B 89.630 135 10 2 2299 2429 283206984 283207118 5.460000e-38 169.0
32 TraesCS7A01G353300 chr4B 91.489 94 7 1 2890 2982 105508874 105508781 9.260000e-26 128.0
33 TraesCS7A01G353300 chr2B 97.895 95 2 0 2890 2984 657882473 657882379 7.060000e-37 165.0
34 TraesCS7A01G353300 chr2B 97.849 93 1 1 2890 2982 62448442 62448533 3.290000e-35 159.0
35 TraesCS7A01G353300 chr1B 97.849 93 2 0 2890 2982 6724049 6724141 9.130000e-36 161.0
36 TraesCS7A01G353300 chr1B 96.739 92 3 0 2890 2981 470889213 470889122 1.530000e-33 154.0
37 TraesCS7A01G353300 chr4D 94.565 92 5 0 2890 2981 3992758 3992849 3.310000e-30 143.0
38 TraesCS7A01G353300 chr4D 94.565 92 4 1 2890 2981 183576334 183576244 1.190000e-29 141.0
39 TraesCS7A01G353300 chr2D 93.478 92 4 1 2890 2981 629390255 629390344 5.540000e-28 135.0
40 TraesCS7A01G353300 chr2D 93.023 43 1 2 3101 3141 304529184 304529226 9.530000e-06 62.1
41 TraesCS7A01G353300 chr5B 98.276 58 0 1 2373 2429 381102324 381102381 2.020000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G353300 chr7A 516996040 516999221 3181 True 2725.500000 4909 100.000000 1 3182 2 chr7A.!!$R3 3181
1 TraesCS7A01G353300 chr7A 516989119 516990181 1062 True 656.000000 656 78.062000 1086 2173 1 chr7A.!!$R1 1087
2 TraesCS7A01G353300 chr7A 517412950 517416821 3871 True 582.750000 1775 88.283000 77 2653 4 chr7A.!!$R4 2576
3 TraesCS7A01G353300 chr7A 670946080 670946630 550 True 342.000000 342 78.508000 1626 2170 1 chr7A.!!$R2 544
4 TraesCS7A01G353300 chr7D 478326761 478329167 2406 False 2379.000000 2379 85.287000 251 2574 1 chr7D.!!$F1 2323
5 TraesCS7A01G353300 chr7D 478569738 478573405 3667 True 1356.000000 2577 84.362500 182 2578 2 chr7D.!!$R1 2396
6 TraesCS7A01G353300 chr7D 478333872 478334416 544 False 486.000000 486 82.815000 1627 2171 1 chr7D.!!$F2 544
7 TraesCS7A01G353300 chr7B 503471554 503474162 2608 False 1196.500000 1633 84.561500 68 2576 2 chr7B.!!$F3 2508
8 TraesCS7A01G353300 chr7B 504243658 504246332 2674 True 500.666667 909 85.293333 179 1977 3 chr7B.!!$R3 1798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.179000 ATGATCAACACGAGGGGAGC 59.821 55.0 0.0 0.0 0.00 4.7 F
1440 3636 0.036952 ACGCCATCAAGACTCAGGTG 60.037 55.0 0.0 0.0 36.01 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 3784 0.038744 ATGGCTGGCAAGTAAGTGCT 59.961 50.0 8.35 0.0 44.31 4.40 R
3044 6811 0.036164 CATTCCAGGGTCACCGTTGA 59.964 55.0 0.00 0.0 43.47 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.771920 GTGTAACCCGATATATTGATGATCAA 57.228 34.615 10.65 10.65 41.09 2.57
26 27 8.656849 GTGTAACCCGATATATTGATGATCAAC 58.343 37.037 10.45 0.00 39.45 3.18
27 28 8.371699 TGTAACCCGATATATTGATGATCAACA 58.628 33.333 10.45 0.00 39.45 3.33
28 29 7.672983 AACCCGATATATTGATGATCAACAC 57.327 36.000 10.45 0.00 39.45 3.32
29 30 5.869344 ACCCGATATATTGATGATCAACACG 59.131 40.000 10.45 11.01 39.45 4.49
30 31 6.099341 CCCGATATATTGATGATCAACACGA 58.901 40.000 10.45 0.00 39.45 4.35
31 32 6.254373 CCCGATATATTGATGATCAACACGAG 59.746 42.308 10.45 1.30 39.45 4.18
32 33 6.254373 CCGATATATTGATGATCAACACGAGG 59.746 42.308 10.45 6.53 39.45 4.63
33 34 6.254373 CGATATATTGATGATCAACACGAGGG 59.746 42.308 10.45 0.00 39.45 4.30
34 35 2.401583 TTGATGATCAACACGAGGGG 57.598 50.000 4.98 0.00 30.26 4.79
35 36 1.567357 TGATGATCAACACGAGGGGA 58.433 50.000 0.00 0.00 0.00 4.81
36 37 1.482182 TGATGATCAACACGAGGGGAG 59.518 52.381 0.00 0.00 0.00 4.30
37 38 0.179000 ATGATCAACACGAGGGGAGC 59.821 55.000 0.00 0.00 0.00 4.70
38 39 1.191489 TGATCAACACGAGGGGAGCA 61.191 55.000 0.00 0.00 0.00 4.26
39 40 0.741221 GATCAACACGAGGGGAGCAC 60.741 60.000 0.00 0.00 0.00 4.40
40 41 2.185310 ATCAACACGAGGGGAGCACC 62.185 60.000 0.00 0.00 39.11 5.01
56 57 2.716217 GCACCCAAGATGCTTTACTCT 58.284 47.619 0.00 0.00 40.08 3.24
57 58 3.873910 GCACCCAAGATGCTTTACTCTA 58.126 45.455 0.00 0.00 40.08 2.43
58 59 4.261801 GCACCCAAGATGCTTTACTCTAA 58.738 43.478 0.00 0.00 40.08 2.10
59 60 4.884164 GCACCCAAGATGCTTTACTCTAAT 59.116 41.667 0.00 0.00 40.08 1.73
60 61 5.008118 GCACCCAAGATGCTTTACTCTAATC 59.992 44.000 0.00 0.00 40.08 1.75
61 62 6.352516 CACCCAAGATGCTTTACTCTAATCT 58.647 40.000 0.00 0.00 0.00 2.40
62 63 6.825721 CACCCAAGATGCTTTACTCTAATCTT 59.174 38.462 0.00 0.00 37.93 2.40
63 64 7.011857 CACCCAAGATGCTTTACTCTAATCTTC 59.988 40.741 0.00 0.00 35.85 2.87
64 65 7.092668 ACCCAAGATGCTTTACTCTAATCTTCT 60.093 37.037 0.00 0.00 35.85 2.85
65 66 7.772757 CCCAAGATGCTTTACTCTAATCTTCTT 59.227 37.037 0.00 0.00 35.85 2.52
66 67 8.825745 CCAAGATGCTTTACTCTAATCTTCTTC 58.174 37.037 0.00 0.00 35.85 2.87
67 68 9.598517 CAAGATGCTTTACTCTAATCTTCTTCT 57.401 33.333 0.00 0.00 35.85 2.85
68 69 9.816354 AAGATGCTTTACTCTAATCTTCTTCTC 57.184 33.333 0.00 0.00 33.39 2.87
69 70 8.134895 AGATGCTTTACTCTAATCTTCTTCTCG 58.865 37.037 0.00 0.00 0.00 4.04
70 71 6.037098 TGCTTTACTCTAATCTTCTTCTCGC 58.963 40.000 0.00 0.00 0.00 5.03
71 72 6.127591 TGCTTTACTCTAATCTTCTTCTCGCT 60.128 38.462 0.00 0.00 0.00 4.93
72 73 6.416750 GCTTTACTCTAATCTTCTTCTCGCTC 59.583 42.308 0.00 0.00 0.00 5.03
73 74 7.392494 TTTACTCTAATCTTCTTCTCGCTCA 57.608 36.000 0.00 0.00 0.00 4.26
74 75 5.243426 ACTCTAATCTTCTTCTCGCTCAC 57.757 43.478 0.00 0.00 0.00 3.51
75 76 4.702612 ACTCTAATCTTCTTCTCGCTCACA 59.297 41.667 0.00 0.00 0.00 3.58
96 97 3.064545 CAGATTCGAACTCCATTGAAGCC 59.935 47.826 0.00 0.00 0.00 4.35
134 137 1.574428 CACGCTTCCAACCTTTCCG 59.426 57.895 0.00 0.00 0.00 4.30
139 142 1.318576 CTTCCAACCTTTCCGCTGTT 58.681 50.000 0.00 0.00 0.00 3.16
140 143 1.001378 CTTCCAACCTTTCCGCTGTTG 60.001 52.381 0.00 0.00 39.20 3.33
149 152 0.863144 TTCCGCTGTTGTACGAAAGC 59.137 50.000 14.61 14.61 0.00 3.51
157 160 4.669197 GCTGTTGTACGAAAGCGATTGATT 60.669 41.667 9.60 0.00 41.64 2.57
158 161 4.953269 TGTTGTACGAAAGCGATTGATTC 58.047 39.130 0.00 0.00 41.64 2.52
162 165 7.064134 TGTTGTACGAAAGCGATTGATTCTTAT 59.936 33.333 0.00 0.00 41.64 1.73
166 169 7.121974 ACGAAAGCGATTGATTCTTATATGG 57.878 36.000 0.00 0.00 41.64 2.74
168 171 7.441157 ACGAAAGCGATTGATTCTTATATGGAA 59.559 33.333 0.00 0.00 41.64 3.53
169 172 8.282592 CGAAAGCGATTGATTCTTATATGGAAA 58.717 33.333 0.00 0.00 40.82 3.13
170 173 9.950680 GAAAGCGATTGATTCTTATATGGAAAA 57.049 29.630 0.00 0.00 0.00 2.29
239 397 2.871133 CACATGCAAGTTGCCATGTAG 58.129 47.619 29.08 22.68 44.23 2.74
286 471 9.120538 GATGCTGGATTAGTACCTTTCAAAATA 57.879 33.333 0.00 0.00 0.00 1.40
305 1405 1.143183 GCCCGAGCTAATTCACGGA 59.857 57.895 10.61 0.00 46.94 4.69
311 1411 0.460284 AGCTAATTCACGGACCAGCG 60.460 55.000 0.00 0.00 34.26 5.18
319 1419 0.454600 CACGGACCAGCGTATACAGT 59.545 55.000 3.32 0.00 0.00 3.55
337 1437 5.607119 ACAGTAATACGGTTGCTTCAAAG 57.393 39.130 0.00 0.00 0.00 2.77
381 1518 3.389206 GAGTGGTGCTCGATTCGC 58.611 61.111 0.00 0.00 34.13 4.70
384 1521 0.602638 AGTGGTGCTCGATTCGCAAA 60.603 50.000 0.00 0.00 39.39 3.68
385 1522 0.237235 GTGGTGCTCGATTCGCAAAA 59.763 50.000 0.00 0.00 39.39 2.44
388 1525 2.030363 TGGTGCTCGATTCGCAAAATTT 60.030 40.909 0.00 0.00 39.39 1.82
389 1526 3.189495 TGGTGCTCGATTCGCAAAATTTA 59.811 39.130 0.00 0.00 39.39 1.40
390 1527 4.162812 GGTGCTCGATTCGCAAAATTTAA 58.837 39.130 0.00 0.00 39.39 1.52
391 1528 4.619336 GGTGCTCGATTCGCAAAATTTAAA 59.381 37.500 0.00 0.00 39.39 1.52
392 1529 5.220024 GGTGCTCGATTCGCAAAATTTAAAG 60.220 40.000 0.00 0.00 39.39 1.85
393 1530 4.856487 TGCTCGATTCGCAAAATTTAAAGG 59.144 37.500 0.00 0.00 33.87 3.11
394 1531 4.265320 GCTCGATTCGCAAAATTTAAAGGG 59.735 41.667 0.00 0.00 0.00 3.95
395 1532 4.739195 TCGATTCGCAAAATTTAAAGGGG 58.261 39.130 0.00 0.00 0.00 4.79
396 1533 4.459685 TCGATTCGCAAAATTTAAAGGGGA 59.540 37.500 0.00 0.00 0.00 4.81
397 1534 5.047943 TCGATTCGCAAAATTTAAAGGGGAA 60.048 36.000 0.00 11.27 35.38 3.97
398 1535 5.635700 CGATTCGCAAAATTTAAAGGGGAAA 59.364 36.000 12.26 0.00 34.73 3.13
399 1536 6.146347 CGATTCGCAAAATTTAAAGGGGAAAA 59.854 34.615 12.26 0.00 34.73 2.29
400 1537 7.307455 CGATTCGCAAAATTTAAAGGGGAAAAA 60.307 33.333 12.26 0.00 34.73 1.94
480 2521 0.822164 GCACCGTGGTGGAGTAGTAT 59.178 55.000 20.00 0.00 45.49 2.12
502 2543 1.355971 CACGTAACGGTAGCAGCAAT 58.644 50.000 0.00 0.00 0.00 3.56
512 2553 2.484770 GGTAGCAGCAATATTCGGTCCA 60.485 50.000 0.00 0.00 0.00 4.02
519 2564 2.201732 CAATATTCGGTCCACGTCCTG 58.798 52.381 0.00 0.00 44.69 3.86
557 2602 1.721664 TAATGCGTCGACTCGGAGGG 61.722 60.000 14.70 0.94 34.35 4.30
634 2699 6.434340 TCTCTGCGCTCTTATAATATTCCAGA 59.566 38.462 9.73 0.00 0.00 3.86
669 2746 8.891367 ATACTATACGATAACTAACACATGCG 57.109 34.615 0.00 0.00 0.00 4.73
672 2754 6.929587 ATACGATAACTAACACATGCGATC 57.070 37.500 0.00 0.00 0.00 3.69
679 2761 1.078709 AACACATGCGATCGTTCAGG 58.921 50.000 17.81 11.19 0.00 3.86
684 2790 2.586357 GCGATCGTTCAGGGGAGC 60.586 66.667 17.81 0.00 0.00 4.70
745 2858 4.654412 ATGCCGGAGCGAGCGATC 62.654 66.667 5.05 0.00 44.31 3.69
763 2876 1.890876 TCACTGGTCAACCAAATCCG 58.109 50.000 3.03 0.00 46.97 4.18
788 2904 4.504916 CTGCAGAGAGTCCGGCCG 62.505 72.222 21.04 21.04 0.00 6.13
795 2911 1.995646 GAGAGTCCGGCCGAGAACTC 61.996 65.000 31.23 31.23 38.71 3.01
802 2919 0.179161 CGGCCGAGAACTCTGTAGTG 60.179 60.000 24.07 0.00 35.62 2.74
809 2926 3.614616 CGAGAACTCTGTAGTGGCATTTC 59.385 47.826 0.00 0.00 35.62 2.17
810 2927 3.589988 AGAACTCTGTAGTGGCATTTCG 58.410 45.455 0.00 0.00 35.62 3.46
811 2928 3.006967 AGAACTCTGTAGTGGCATTTCGT 59.993 43.478 0.00 0.00 35.62 3.85
812 2929 4.219944 AGAACTCTGTAGTGGCATTTCGTA 59.780 41.667 0.00 0.00 35.62 3.43
813 2930 3.846360 ACTCTGTAGTGGCATTTCGTAC 58.154 45.455 0.00 0.00 33.57 3.67
814 2931 2.852413 CTCTGTAGTGGCATTTCGTACG 59.148 50.000 9.53 9.53 0.00 3.67
815 2932 2.229543 TCTGTAGTGGCATTTCGTACGT 59.770 45.455 16.05 0.00 0.00 3.57
816 2933 3.439825 TCTGTAGTGGCATTTCGTACGTA 59.560 43.478 16.05 1.99 0.00 3.57
836 2956 3.876274 ACGTGAGTGAGTGATAGCAAT 57.124 42.857 0.00 0.00 46.97 3.56
916 3057 5.415221 GCAGCTAGAGCACTATAAATAGGG 58.585 45.833 4.01 0.00 45.16 3.53
968 3120 4.153117 GCTCGATCACATCAAAAGAGTTGT 59.847 41.667 0.00 0.00 0.00 3.32
991 3144 1.375396 TCACATCGACCAAAGCCGG 60.375 57.895 0.00 0.00 0.00 6.13
995 3148 1.084370 CATCGACCAAAGCCGGAGAC 61.084 60.000 5.05 0.00 0.00 3.36
1116 3269 0.240411 GCTTCTACTCCACGTCGTGT 59.760 55.000 23.01 8.31 0.00 4.49
1285 3465 1.665679 TGCTAGCTGCTGATTTTACGC 59.334 47.619 17.23 2.76 43.37 4.42
1318 3514 2.807967 CTGACATTTGTGATGTGTCGGT 59.192 45.455 5.61 0.00 43.88 4.69
1434 3630 0.817654 TGATCGACGCCATCAAGACT 59.182 50.000 0.00 0.00 0.00 3.24
1440 3636 0.036952 ACGCCATCAAGACTCAGGTG 60.037 55.000 0.00 0.00 36.01 4.00
1567 3771 2.061028 CCGACCCGTACTACAAAACAC 58.939 52.381 0.00 0.00 0.00 3.32
1568 3772 1.715519 CGACCCGTACTACAAAACACG 59.284 52.381 0.00 0.00 0.00 4.49
1577 3784 3.252400 ACTACAAAACACGACACGTTCA 58.748 40.909 0.00 0.00 38.32 3.18
1585 3792 1.189446 CACGACACGTTCAGCACTTAC 59.811 52.381 0.00 0.00 38.32 2.34
1590 3804 1.069906 CACGTTCAGCACTTACTTGCC 60.070 52.381 0.00 0.00 44.14 4.52
1617 3833 1.444553 CTGACTCGGCCGAACTGTC 60.445 63.158 29.38 29.38 0.00 3.51
1624 3840 3.422303 GCCGAACTGTCGCATGCA 61.422 61.111 19.57 1.73 46.28 3.96
2182 4404 0.257039 CTGCAGGAGGCCCAACTAAT 59.743 55.000 5.57 0.00 43.89 1.73
2185 4407 2.310349 TGCAGGAGGCCCAACTAATAAA 59.690 45.455 0.00 0.00 43.89 1.40
2218 4441 8.388103 ACGTAACAAGTGTGCTAAATAATGATC 58.612 33.333 0.00 0.00 0.00 2.92
2263 4486 3.118920 TGGTCAGGTTCACGTATGTATGG 60.119 47.826 0.00 0.00 0.00 2.74
2272 4495 7.231925 AGGTTCACGTATGTATGGATGTATGTA 59.768 37.037 0.00 0.00 0.00 2.29
2311 4542 0.654472 CACACGCTCGTTTGCTCAAC 60.654 55.000 0.00 0.00 0.00 3.18
2326 4557 3.481999 AACCCGGGGTGAACGTGT 61.482 61.111 27.92 0.00 35.34 4.49
2338 4569 4.810491 GGGTGAACGTGTAAACTACAAAGA 59.190 41.667 0.00 0.00 40.93 2.52
2440 6196 9.205719 AGAAAACGATCTCTATTGATGATGATG 57.794 33.333 0.00 0.00 0.00 3.07
2441 6197 7.902387 AAACGATCTCTATTGATGATGATGG 57.098 36.000 0.00 0.00 0.00 3.51
2445 6201 6.872547 CGATCTCTATTGATGATGATGGTGTT 59.127 38.462 0.00 0.00 0.00 3.32
2447 6203 7.128234 TCTCTATTGATGATGATGGTGTTCA 57.872 36.000 0.00 0.00 0.00 3.18
2448 6204 6.988580 TCTCTATTGATGATGATGGTGTTCAC 59.011 38.462 0.00 0.00 0.00 3.18
2450 6206 8.021898 TCTATTGATGATGATGGTGTTCACTA 57.978 34.615 2.98 0.00 0.00 2.74
2451 6207 8.485392 TCTATTGATGATGATGGTGTTCACTAA 58.515 33.333 2.98 0.00 0.00 2.24
2458 6217 7.041721 TGATGATGGTGTTCACTAATCACTAC 58.958 38.462 17.12 13.64 30.53 2.73
2465 6225 7.038587 TGGTGTTCACTAATCACTACTATGGTT 60.039 37.037 2.98 0.00 33.30 3.67
2471 6231 7.069950 TCACTAATCACTACTATGGTTGCTGAT 59.930 37.037 0.00 0.00 0.00 2.90
2519 6286 6.498303 AGCTCACATTATGGGTACATAGATGA 59.502 38.462 0.00 6.96 40.46 2.92
2580 6347 4.775058 GACCATAGTCGACATCTATGCT 57.225 45.455 19.50 4.68 41.69 3.79
2584 6351 2.967599 AGTCGACATCTATGCTGCAA 57.032 45.000 19.50 0.00 0.00 4.08
2593 6360 4.395854 ACATCTATGCTGCAAAACAATCGA 59.604 37.500 6.36 0.00 0.00 3.59
2594 6361 5.066893 ACATCTATGCTGCAAAACAATCGAT 59.933 36.000 6.36 0.00 0.00 3.59
2595 6362 6.260714 ACATCTATGCTGCAAAACAATCGATA 59.739 34.615 6.36 0.00 0.00 2.92
2596 6363 6.866010 TCTATGCTGCAAAACAATCGATAT 57.134 33.333 6.36 0.00 0.00 1.63
2597 6364 6.661669 TCTATGCTGCAAAACAATCGATATG 58.338 36.000 6.36 2.14 0.00 1.78
2598 6365 4.700268 TGCTGCAAAACAATCGATATGT 57.300 36.364 0.00 2.81 0.00 2.29
2599 6366 5.058149 TGCTGCAAAACAATCGATATGTT 57.942 34.783 15.64 15.64 42.56 2.71
2600 6367 6.188400 TGCTGCAAAACAATCGATATGTTA 57.812 33.333 19.35 8.73 39.98 2.41
2601 6368 6.257423 TGCTGCAAAACAATCGATATGTTAG 58.743 36.000 19.35 16.58 39.98 2.34
2602 6369 5.172053 GCTGCAAAACAATCGATATGTTAGC 59.828 40.000 24.08 24.08 39.98 3.09
2603 6370 5.262422 TGCAAAACAATCGATATGTTAGCG 58.738 37.500 24.50 17.63 41.21 4.26
2618 6385 3.702548 TGTTAGCGTAAATGCCTAGGAGA 59.297 43.478 14.75 0.00 34.65 3.71
2620 6387 1.067212 AGCGTAAATGCCTAGGAGACG 59.933 52.381 14.75 14.05 34.65 4.18
2644 6411 4.785453 GGGCGGGTGAGGAAGCAG 62.785 72.222 0.00 0.00 0.00 4.24
2646 6413 3.706373 GCGGGTGAGGAAGCAGGA 61.706 66.667 0.00 0.00 0.00 3.86
2647 6414 2.581354 CGGGTGAGGAAGCAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
2653 6420 2.690510 AGGAAGCAGGAGGAGGGC 60.691 66.667 0.00 0.00 0.00 5.19
2654 6421 3.803162 GGAAGCAGGAGGAGGGCC 61.803 72.222 0.00 0.00 0.00 5.80
2655 6422 4.168291 GAAGCAGGAGGAGGGCCG 62.168 72.222 0.00 0.00 39.96 6.13
2656 6423 4.722535 AAGCAGGAGGAGGGCCGA 62.723 66.667 0.00 0.00 39.96 5.54
2657 6424 4.488911 AGCAGGAGGAGGGCCGAT 62.489 66.667 0.00 0.00 39.96 4.18
2923 6690 8.824159 AGGATTGACGAGTAATTATCAATGAG 57.176 34.615 14.00 0.00 40.88 2.90
2924 6691 8.642432 AGGATTGACGAGTAATTATCAATGAGA 58.358 33.333 14.00 0.00 40.88 3.27
2925 6692 9.429359 GGATTGACGAGTAATTATCAATGAGAT 57.571 33.333 14.00 0.00 40.88 2.75
2931 6698 9.915629 ACGAGTAATTATCAATGAGATTAGACC 57.084 33.333 0.00 0.00 38.19 3.85
2932 6699 9.914131 CGAGTAATTATCAATGAGATTAGACCA 57.086 33.333 3.16 0.00 38.19 4.02
2945 6712 8.026341 TGAGATTAGACCAATATACGTACTCG 57.974 38.462 0.00 0.00 43.34 4.18
2946 6713 7.118825 TGAGATTAGACCAATATACGTACTCGG 59.881 40.741 0.00 0.00 41.85 4.63
2947 6714 3.911661 AGACCAATATACGTACTCGGC 57.088 47.619 0.00 0.00 41.85 5.54
2948 6715 2.555757 AGACCAATATACGTACTCGGCC 59.444 50.000 0.00 0.00 41.85 6.13
2949 6716 1.615392 ACCAATATACGTACTCGGCCC 59.385 52.381 0.00 0.00 41.85 5.80
2950 6717 1.067354 CCAATATACGTACTCGGCCCC 60.067 57.143 0.00 0.00 41.85 5.80
2951 6718 1.067354 CAATATACGTACTCGGCCCCC 60.067 57.143 0.00 0.00 41.85 5.40
2969 6736 2.180276 CCCCCTATACTCGAATCCTGG 58.820 57.143 0.00 0.00 0.00 4.45
2970 6737 1.550976 CCCCTATACTCGAATCCTGGC 59.449 57.143 0.00 0.00 0.00 4.85
2971 6738 2.530701 CCCTATACTCGAATCCTGGCT 58.469 52.381 0.00 0.00 0.00 4.75
2972 6739 2.494073 CCCTATACTCGAATCCTGGCTC 59.506 54.545 0.00 0.00 0.00 4.70
2973 6740 2.494073 CCTATACTCGAATCCTGGCTCC 59.506 54.545 0.00 0.00 0.00 4.70
2974 6741 2.088104 ATACTCGAATCCTGGCTCCA 57.912 50.000 0.00 0.00 0.00 3.86
2975 6742 1.112113 TACTCGAATCCTGGCTCCAC 58.888 55.000 0.00 0.00 0.00 4.02
2976 6743 1.144936 CTCGAATCCTGGCTCCACC 59.855 63.158 0.00 0.00 39.84 4.61
2978 6745 1.450312 CGAATCCTGGCTCCACCAC 60.450 63.158 0.00 0.00 46.36 4.16
2979 6746 1.903877 CGAATCCTGGCTCCACCACT 61.904 60.000 0.00 0.00 46.36 4.00
2980 6747 0.393537 GAATCCTGGCTCCACCACTG 60.394 60.000 0.00 0.00 46.36 3.66
2981 6748 2.490270 AATCCTGGCTCCACCACTGC 62.490 60.000 0.00 0.00 46.36 4.40
2994 6761 2.351276 ACTGCGGGTGATGGGAAC 59.649 61.111 0.00 0.00 0.00 3.62
3008 6775 2.806434 TGGGAACAAATCATGAGTGGG 58.194 47.619 12.46 4.26 37.44 4.61
3009 6776 2.378208 TGGGAACAAATCATGAGTGGGA 59.622 45.455 12.46 0.00 37.44 4.37
3010 6777 3.011595 TGGGAACAAATCATGAGTGGGAT 59.988 43.478 12.46 0.00 37.44 3.85
3011 6778 4.229353 TGGGAACAAATCATGAGTGGGATA 59.771 41.667 12.46 0.00 37.44 2.59
3012 6779 5.200483 GGGAACAAATCATGAGTGGGATAA 58.800 41.667 12.46 0.00 0.00 1.75
3013 6780 5.300286 GGGAACAAATCATGAGTGGGATAAG 59.700 44.000 12.46 0.00 0.00 1.73
3014 6781 5.221126 GGAACAAATCATGAGTGGGATAAGC 60.221 44.000 12.46 0.00 0.00 3.09
3015 6782 5.121380 ACAAATCATGAGTGGGATAAGCT 57.879 39.130 12.46 0.00 0.00 3.74
3016 6783 5.513233 ACAAATCATGAGTGGGATAAGCTT 58.487 37.500 3.48 3.48 0.00 3.74
3017 6784 5.954150 ACAAATCATGAGTGGGATAAGCTTT 59.046 36.000 3.20 0.00 0.00 3.51
3018 6785 6.127535 ACAAATCATGAGTGGGATAAGCTTTG 60.128 38.462 3.20 10.10 0.00 2.77
3019 6786 4.842531 TCATGAGTGGGATAAGCTTTGA 57.157 40.909 3.20 0.00 0.00 2.69
3020 6787 4.774124 TCATGAGTGGGATAAGCTTTGAG 58.226 43.478 3.20 0.00 0.00 3.02
3021 6788 4.225942 TCATGAGTGGGATAAGCTTTGAGT 59.774 41.667 3.20 0.00 0.00 3.41
3022 6789 3.942829 TGAGTGGGATAAGCTTTGAGTG 58.057 45.455 3.20 0.00 0.00 3.51
3023 6790 3.274288 GAGTGGGATAAGCTTTGAGTGG 58.726 50.000 3.20 0.00 0.00 4.00
3024 6791 2.025887 AGTGGGATAAGCTTTGAGTGGG 60.026 50.000 3.20 0.00 0.00 4.61
3025 6792 1.284785 TGGGATAAGCTTTGAGTGGGG 59.715 52.381 3.20 0.00 0.00 4.96
3026 6793 1.410224 GGGATAAGCTTTGAGTGGGGG 60.410 57.143 3.20 0.00 0.00 5.40
3027 6794 1.564348 GGATAAGCTTTGAGTGGGGGA 59.436 52.381 3.20 0.00 0.00 4.81
3028 6795 2.422093 GGATAAGCTTTGAGTGGGGGAG 60.422 54.545 3.20 0.00 0.00 4.30
3029 6796 0.328258 TAAGCTTTGAGTGGGGGAGC 59.672 55.000 3.20 0.00 0.00 4.70
3030 6797 2.361737 GCTTTGAGTGGGGGAGCC 60.362 66.667 0.00 0.00 0.00 4.70
3031 6798 2.911926 GCTTTGAGTGGGGGAGCCT 61.912 63.158 0.00 0.00 0.00 4.58
3032 6799 1.301293 CTTTGAGTGGGGGAGCCTC 59.699 63.158 0.00 0.00 0.00 4.70
3033 6800 2.527951 CTTTGAGTGGGGGAGCCTCG 62.528 65.000 0.00 0.00 0.00 4.63
3042 6809 3.859414 GGAGCCTCGCTGGAGCAT 61.859 66.667 0.00 0.00 39.88 3.79
3043 6810 2.588314 GAGCCTCGCTGGAGCATG 60.588 66.667 0.00 0.00 39.88 4.06
3044 6811 3.382803 GAGCCTCGCTGGAGCATGT 62.383 63.158 0.00 0.00 39.88 3.21
3045 6812 2.894387 GCCTCGCTGGAGCATGTC 60.894 66.667 0.00 0.00 42.21 3.06
3046 6813 2.580815 CCTCGCTGGAGCATGTCA 59.419 61.111 0.00 0.00 42.21 3.58
3047 6814 1.078918 CCTCGCTGGAGCATGTCAA 60.079 57.895 0.00 0.00 42.21 3.18
3048 6815 1.364626 CCTCGCTGGAGCATGTCAAC 61.365 60.000 0.00 0.00 42.21 3.18
3049 6816 1.690283 CTCGCTGGAGCATGTCAACG 61.690 60.000 0.00 0.00 42.21 4.10
3050 6817 2.743752 CGCTGGAGCATGTCAACGG 61.744 63.158 0.00 0.00 42.21 4.44
3051 6818 1.672356 GCTGGAGCATGTCAACGGT 60.672 57.895 0.00 0.00 41.59 4.83
3052 6819 1.915614 GCTGGAGCATGTCAACGGTG 61.916 60.000 0.00 0.00 41.59 4.94
3053 6820 0.320683 CTGGAGCATGTCAACGGTGA 60.321 55.000 0.00 0.00 0.00 4.02
3061 6828 3.973458 TCAACGGTGACCCTGGAA 58.027 55.556 0.00 0.00 0.00 3.53
3062 6829 2.458892 TCAACGGTGACCCTGGAAT 58.541 52.632 0.00 0.00 0.00 3.01
3063 6830 0.036164 TCAACGGTGACCCTGGAATG 59.964 55.000 0.00 0.00 0.00 2.67
3064 6831 0.250727 CAACGGTGACCCTGGAATGT 60.251 55.000 0.00 0.00 0.00 2.71
3065 6832 0.250727 AACGGTGACCCTGGAATGTG 60.251 55.000 0.00 0.00 0.00 3.21
3066 6833 2.040544 CGGTGACCCTGGAATGTGC 61.041 63.158 0.00 0.00 0.00 4.57
3067 6834 1.678970 GGTGACCCTGGAATGTGCC 60.679 63.158 0.00 0.00 0.00 5.01
3068 6835 1.678970 GTGACCCTGGAATGTGCCC 60.679 63.158 0.00 0.00 0.00 5.36
3069 6836 2.438434 GACCCTGGAATGTGCCCG 60.438 66.667 0.00 0.00 0.00 6.13
3070 6837 3.995506 GACCCTGGAATGTGCCCGG 62.996 68.421 0.00 0.00 0.00 5.73
3071 6838 4.047125 CCCTGGAATGTGCCCGGT 62.047 66.667 0.00 0.00 0.00 5.28
3072 6839 2.675242 CCCTGGAATGTGCCCGGTA 61.675 63.158 0.00 0.00 0.00 4.02
3073 6840 1.451387 CCTGGAATGTGCCCGGTAC 60.451 63.158 0.00 0.00 0.00 3.34
3074 6841 1.298340 CTGGAATGTGCCCGGTACA 59.702 57.895 11.08 11.08 32.05 2.90
3075 6842 0.107214 CTGGAATGTGCCCGGTACAT 60.107 55.000 14.88 14.88 40.33 2.29
3076 6843 0.107410 TGGAATGTGCCCGGTACATC 60.107 55.000 20.09 13.45 37.86 3.06
3077 6844 1.157870 GGAATGTGCCCGGTACATCG 61.158 60.000 20.09 0.00 37.86 3.84
3078 6845 0.461339 GAATGTGCCCGGTACATCGT 60.461 55.000 20.09 7.04 37.86 3.73
3079 6846 0.461339 AATGTGCCCGGTACATCGTC 60.461 55.000 20.09 0.00 37.86 4.20
3080 6847 2.202837 GTGCCCGGTACATCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
3081 6848 2.680707 TGCCCGGTACATCGTCCA 60.681 61.111 0.00 0.00 0.00 4.02
3082 6849 2.202837 GCCCGGTACATCGTCCAC 60.203 66.667 0.00 0.00 0.00 4.02
3083 6850 2.497770 CCCGGTACATCGTCCACC 59.502 66.667 0.00 0.00 0.00 4.61
3084 6851 2.497770 CCGGTACATCGTCCACCC 59.502 66.667 0.00 0.00 0.00 4.61
3085 6852 2.352821 CCGGTACATCGTCCACCCA 61.353 63.158 0.00 0.00 0.00 4.51
3086 6853 1.592743 CGGTACATCGTCCACCCAA 59.407 57.895 0.00 0.00 0.00 4.12
3087 6854 0.177141 CGGTACATCGTCCACCCAAT 59.823 55.000 0.00 0.00 0.00 3.16
3088 6855 1.805120 CGGTACATCGTCCACCCAATC 60.805 57.143 0.00 0.00 0.00 2.67
3089 6856 1.485066 GGTACATCGTCCACCCAATCT 59.515 52.381 0.00 0.00 0.00 2.40
3090 6857 2.093128 GGTACATCGTCCACCCAATCTT 60.093 50.000 0.00 0.00 0.00 2.40
3091 6858 2.879103 ACATCGTCCACCCAATCTTT 57.121 45.000 0.00 0.00 0.00 2.52
3092 6859 3.154827 ACATCGTCCACCCAATCTTTT 57.845 42.857 0.00 0.00 0.00 2.27
3093 6860 3.496331 ACATCGTCCACCCAATCTTTTT 58.504 40.909 0.00 0.00 0.00 1.94
3094 6861 4.658063 ACATCGTCCACCCAATCTTTTTA 58.342 39.130 0.00 0.00 0.00 1.52
3095 6862 5.074115 ACATCGTCCACCCAATCTTTTTAA 58.926 37.500 0.00 0.00 0.00 1.52
3096 6863 5.183140 ACATCGTCCACCCAATCTTTTTAAG 59.817 40.000 0.00 0.00 0.00 1.85
3097 6864 3.504520 TCGTCCACCCAATCTTTTTAAGC 59.495 43.478 0.00 0.00 0.00 3.09
3098 6865 3.366985 CGTCCACCCAATCTTTTTAAGCC 60.367 47.826 0.00 0.00 0.00 4.35
3099 6866 2.823154 TCCACCCAATCTTTTTAAGCCG 59.177 45.455 0.00 0.00 0.00 5.52
3100 6867 2.823154 CCACCCAATCTTTTTAAGCCGA 59.177 45.455 0.00 0.00 0.00 5.54
3101 6868 3.257127 CCACCCAATCTTTTTAAGCCGAA 59.743 43.478 0.00 0.00 0.00 4.30
3102 6869 4.262249 CCACCCAATCTTTTTAAGCCGAAA 60.262 41.667 0.00 0.00 0.00 3.46
3103 6870 4.684242 CACCCAATCTTTTTAAGCCGAAAC 59.316 41.667 0.00 0.00 0.00 2.78
3104 6871 4.242475 CCCAATCTTTTTAAGCCGAAACC 58.758 43.478 0.00 0.00 0.00 3.27
3105 6872 3.917985 CCAATCTTTTTAAGCCGAAACCG 59.082 43.478 0.00 0.00 0.00 4.44
3106 6873 4.542735 CAATCTTTTTAAGCCGAAACCGT 58.457 39.130 0.00 0.00 0.00 4.83
3107 6874 5.335035 CCAATCTTTTTAAGCCGAAACCGTA 60.335 40.000 0.00 0.00 0.00 4.02
3108 6875 4.996062 TCTTTTTAAGCCGAAACCGTAG 57.004 40.909 0.00 0.00 0.00 3.51
3109 6876 4.630111 TCTTTTTAAGCCGAAACCGTAGA 58.370 39.130 0.00 0.00 0.00 2.59
3110 6877 5.055812 TCTTTTTAAGCCGAAACCGTAGAA 58.944 37.500 0.00 0.00 0.00 2.10
3111 6878 4.730600 TTTTAAGCCGAAACCGTAGAAC 57.269 40.909 0.00 0.00 0.00 3.01
3112 6879 3.383620 TTAAGCCGAAACCGTAGAACA 57.616 42.857 0.00 0.00 0.00 3.18
3113 6880 2.243602 AAGCCGAAACCGTAGAACAA 57.756 45.000 0.00 0.00 0.00 2.83
3114 6881 2.467566 AGCCGAAACCGTAGAACAAT 57.532 45.000 0.00 0.00 0.00 2.71
3115 6882 3.598019 AGCCGAAACCGTAGAACAATA 57.402 42.857 0.00 0.00 0.00 1.90
3116 6883 3.518590 AGCCGAAACCGTAGAACAATAG 58.481 45.455 0.00 0.00 0.00 1.73
3117 6884 3.056322 AGCCGAAACCGTAGAACAATAGT 60.056 43.478 0.00 0.00 0.00 2.12
3118 6885 3.681417 GCCGAAACCGTAGAACAATAGTT 59.319 43.478 0.00 0.00 41.64 2.24
3119 6886 4.152938 GCCGAAACCGTAGAACAATAGTTT 59.847 41.667 0.00 0.00 38.30 2.66
3120 6887 5.334337 GCCGAAACCGTAGAACAATAGTTTT 60.334 40.000 0.00 0.00 38.30 2.43
3121 6888 6.128580 GCCGAAACCGTAGAACAATAGTTTTA 60.129 38.462 0.00 0.00 38.30 1.52
3122 6889 7.229530 CCGAAACCGTAGAACAATAGTTTTAC 58.770 38.462 0.00 0.00 40.21 2.01
3133 6900 9.287373 AGAACAATAGTTTTACGGTATTTTCCA 57.713 29.630 0.00 0.00 38.30 3.53
3143 6910 9.500864 TTTTACGGTATTTTCCATTAATAACGC 57.499 29.630 11.61 0.00 47.00 4.84
3144 6911 6.680874 ACGGTATTTTCCATTAATAACGCA 57.319 33.333 11.61 0.00 47.00 5.24
3145 6912 7.086230 ACGGTATTTTCCATTAATAACGCAA 57.914 32.000 11.61 0.00 47.00 4.85
3146 6913 7.536855 ACGGTATTTTCCATTAATAACGCAAA 58.463 30.769 11.61 0.00 47.00 3.68
3147 6914 7.698970 ACGGTATTTTCCATTAATAACGCAAAG 59.301 33.333 11.61 0.00 47.00 2.77
3148 6915 7.911205 CGGTATTTTCCATTAATAACGCAAAGA 59.089 33.333 0.00 0.00 40.46 2.52
3149 6916 9.233232 GGTATTTTCCATTAATAACGCAAAGAG 57.767 33.333 0.00 0.00 0.00 2.85
3150 6917 9.783256 GTATTTTCCATTAATAACGCAAAGAGT 57.217 29.630 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.656849 GTTGATCATCAATATATCGGGTTACAC 58.343 37.037 2.67 0.00 38.79 2.90
1 2 8.371699 TGTTGATCATCAATATATCGGGTTACA 58.628 33.333 2.67 0.00 38.79 2.41
3 4 7.544217 CGTGTTGATCATCAATATATCGGGTTA 59.456 37.037 2.67 0.00 38.79 2.85
4 5 6.368791 CGTGTTGATCATCAATATATCGGGTT 59.631 38.462 2.67 0.00 38.79 4.11
5 6 5.869344 CGTGTTGATCATCAATATATCGGGT 59.131 40.000 2.67 0.00 38.79 5.28
6 7 6.099341 TCGTGTTGATCATCAATATATCGGG 58.901 40.000 2.67 0.00 38.79 5.14
7 8 6.254373 CCTCGTGTTGATCATCAATATATCGG 59.746 42.308 2.67 0.00 38.79 4.18
9 10 6.536582 CCCCTCGTGTTGATCATCAATATATC 59.463 42.308 2.67 0.00 38.79 1.63
10 11 6.213397 TCCCCTCGTGTTGATCATCAATATAT 59.787 38.462 2.67 0.00 38.79 0.86
11 12 5.542251 TCCCCTCGTGTTGATCATCAATATA 59.458 40.000 2.67 0.00 38.79 0.86
12 13 4.347876 TCCCCTCGTGTTGATCATCAATAT 59.652 41.667 2.67 0.00 38.79 1.28
13 14 3.709141 TCCCCTCGTGTTGATCATCAATA 59.291 43.478 2.67 0.00 38.79 1.90
14 15 2.505407 TCCCCTCGTGTTGATCATCAAT 59.495 45.455 2.67 0.00 38.79 2.57
15 16 1.905894 TCCCCTCGTGTTGATCATCAA 59.094 47.619 8.04 0.00 33.32 2.57
16 17 1.482182 CTCCCCTCGTGTTGATCATCA 59.518 52.381 2.22 2.22 0.00 3.07
17 18 1.808133 GCTCCCCTCGTGTTGATCATC 60.808 57.143 0.00 0.00 0.00 2.92
18 19 0.179000 GCTCCCCTCGTGTTGATCAT 59.821 55.000 0.00 0.00 0.00 2.45
19 20 1.191489 TGCTCCCCTCGTGTTGATCA 61.191 55.000 0.00 0.00 0.00 2.92
20 21 0.741221 GTGCTCCCCTCGTGTTGATC 60.741 60.000 0.00 0.00 0.00 2.92
21 22 1.296715 GTGCTCCCCTCGTGTTGAT 59.703 57.895 0.00 0.00 0.00 2.57
22 23 2.741092 GTGCTCCCCTCGTGTTGA 59.259 61.111 0.00 0.00 0.00 3.18
23 24 2.358737 GGTGCTCCCCTCGTGTTG 60.359 66.667 0.00 0.00 0.00 3.33
36 37 2.716217 AGAGTAAAGCATCTTGGGTGC 58.284 47.619 0.00 0.00 42.81 5.01
37 38 6.352516 AGATTAGAGTAAAGCATCTTGGGTG 58.647 40.000 0.00 0.00 0.00 4.61
38 39 6.567602 AGATTAGAGTAAAGCATCTTGGGT 57.432 37.500 0.00 0.00 0.00 4.51
39 40 7.278875 AGAAGATTAGAGTAAAGCATCTTGGG 58.721 38.462 0.00 0.00 34.92 4.12
40 41 8.729805 AAGAAGATTAGAGTAAAGCATCTTGG 57.270 34.615 0.00 0.00 34.92 3.61
41 42 9.598517 AGAAGAAGATTAGAGTAAAGCATCTTG 57.401 33.333 0.00 0.00 34.92 3.02
42 43 9.816354 GAGAAGAAGATTAGAGTAAAGCATCTT 57.184 33.333 0.00 0.00 36.99 2.40
43 44 8.134895 CGAGAAGAAGATTAGAGTAAAGCATCT 58.865 37.037 0.00 0.00 0.00 2.90
44 45 7.096230 GCGAGAAGAAGATTAGAGTAAAGCATC 60.096 40.741 0.00 0.00 0.00 3.91
45 46 6.699642 GCGAGAAGAAGATTAGAGTAAAGCAT 59.300 38.462 0.00 0.00 0.00 3.79
46 47 6.037098 GCGAGAAGAAGATTAGAGTAAAGCA 58.963 40.000 0.00 0.00 0.00 3.91
47 48 6.270064 AGCGAGAAGAAGATTAGAGTAAAGC 58.730 40.000 0.00 0.00 0.00 3.51
48 49 7.431084 GTGAGCGAGAAGAAGATTAGAGTAAAG 59.569 40.741 0.00 0.00 0.00 1.85
49 50 7.094334 TGTGAGCGAGAAGAAGATTAGAGTAAA 60.094 37.037 0.00 0.00 0.00 2.01
50 51 6.374613 TGTGAGCGAGAAGAAGATTAGAGTAA 59.625 38.462 0.00 0.00 0.00 2.24
51 52 5.880887 TGTGAGCGAGAAGAAGATTAGAGTA 59.119 40.000 0.00 0.00 0.00 2.59
52 53 4.702612 TGTGAGCGAGAAGAAGATTAGAGT 59.297 41.667 0.00 0.00 0.00 3.24
53 54 5.065859 TCTGTGAGCGAGAAGAAGATTAGAG 59.934 44.000 0.00 0.00 0.00 2.43
54 55 4.944317 TCTGTGAGCGAGAAGAAGATTAGA 59.056 41.667 0.00 0.00 0.00 2.10
55 56 5.242069 TCTGTGAGCGAGAAGAAGATTAG 57.758 43.478 0.00 0.00 0.00 1.73
56 57 5.843673 ATCTGTGAGCGAGAAGAAGATTA 57.156 39.130 0.00 0.00 0.00 1.75
57 58 4.734398 ATCTGTGAGCGAGAAGAAGATT 57.266 40.909 0.00 0.00 0.00 2.40
58 59 4.681744 GAATCTGTGAGCGAGAAGAAGAT 58.318 43.478 0.00 0.00 0.00 2.40
59 60 3.426829 CGAATCTGTGAGCGAGAAGAAGA 60.427 47.826 0.00 0.00 0.00 2.87
60 61 2.851235 CGAATCTGTGAGCGAGAAGAAG 59.149 50.000 0.00 0.00 0.00 2.85
61 62 2.488153 TCGAATCTGTGAGCGAGAAGAA 59.512 45.455 0.00 0.00 0.00 2.52
62 63 2.084546 TCGAATCTGTGAGCGAGAAGA 58.915 47.619 0.00 0.00 0.00 2.87
63 64 2.551355 TCGAATCTGTGAGCGAGAAG 57.449 50.000 0.00 0.00 0.00 2.85
64 65 2.229062 AGTTCGAATCTGTGAGCGAGAA 59.771 45.455 0.00 0.00 34.01 2.87
65 66 1.813178 AGTTCGAATCTGTGAGCGAGA 59.187 47.619 0.00 0.00 34.01 4.04
66 67 2.181205 GAGTTCGAATCTGTGAGCGAG 58.819 52.381 0.00 0.00 34.01 5.03
67 68 1.135373 GGAGTTCGAATCTGTGAGCGA 60.135 52.381 0.00 0.00 0.00 4.93
68 69 1.272781 GGAGTTCGAATCTGTGAGCG 58.727 55.000 0.00 0.00 0.00 5.03
69 70 2.370281 TGGAGTTCGAATCTGTGAGC 57.630 50.000 0.00 0.00 0.00 4.26
70 71 4.498241 TCAATGGAGTTCGAATCTGTGAG 58.502 43.478 0.00 0.00 0.00 3.51
71 72 4.535526 TCAATGGAGTTCGAATCTGTGA 57.464 40.909 0.00 0.00 0.00 3.58
72 73 4.436584 GCTTCAATGGAGTTCGAATCTGTG 60.437 45.833 0.00 0.00 0.00 3.66
73 74 3.686726 GCTTCAATGGAGTTCGAATCTGT 59.313 43.478 0.00 0.00 0.00 3.41
74 75 3.064545 GGCTTCAATGGAGTTCGAATCTG 59.935 47.826 0.00 0.00 0.00 2.90
75 76 3.274288 GGCTTCAATGGAGTTCGAATCT 58.726 45.455 0.00 0.00 0.00 2.40
96 97 1.532090 GCGTCTATCTCACTGTCACCG 60.532 57.143 0.00 0.00 0.00 4.94
134 137 2.156891 TCAATCGCTTTCGTACAACAGC 59.843 45.455 0.00 0.00 36.96 4.40
139 142 8.699749 CATATAAGAATCAATCGCTTTCGTACA 58.300 33.333 0.00 0.00 36.96 2.90
140 143 8.162880 CCATATAAGAATCAATCGCTTTCGTAC 58.837 37.037 0.00 0.00 36.96 3.67
177 180 9.841880 CAATTATTCTCGAGATAGGACGATAAA 57.158 33.333 17.44 0.00 37.86 1.40
193 349 6.721571 TGTCGAGGTCAAACAATTATTCTC 57.278 37.500 0.00 0.00 0.00 2.87
296 1396 2.166870 TGTATACGCTGGTCCGTGAATT 59.833 45.455 0.00 0.00 42.15 2.17
302 1402 3.637998 ATTACTGTATACGCTGGTCCG 57.362 47.619 0.00 0.00 0.00 4.79
311 1411 7.760131 TTGAAGCAACCGTATTACTGTATAC 57.240 36.000 0.00 0.00 0.00 1.47
319 1419 5.057819 TCACACTTTGAAGCAACCGTATTA 58.942 37.500 0.00 0.00 0.00 0.98
327 1427 6.691754 TTGTTATCTCACACTTTGAAGCAA 57.308 33.333 0.00 0.00 32.21 3.91
374 1511 4.739195 TCCCCTTTAAATTTTGCGAATCG 58.261 39.130 0.00 0.00 0.00 3.34
375 1512 7.428282 TTTTCCCCTTTAAATTTTGCGAATC 57.572 32.000 0.00 0.00 0.00 2.52
376 1513 7.809546 TTTTTCCCCTTTAAATTTTGCGAAT 57.190 28.000 0.00 0.00 0.00 3.34
397 1534 4.142381 GCCTGGATAACTCGCTCAATTTTT 60.142 41.667 0.00 0.00 0.00 1.94
398 1535 3.378427 GCCTGGATAACTCGCTCAATTTT 59.622 43.478 0.00 0.00 0.00 1.82
399 1536 2.945668 GCCTGGATAACTCGCTCAATTT 59.054 45.455 0.00 0.00 0.00 1.82
400 1537 2.092968 TGCCTGGATAACTCGCTCAATT 60.093 45.455 0.00 0.00 0.00 2.32
401 1538 1.486310 TGCCTGGATAACTCGCTCAAT 59.514 47.619 0.00 0.00 0.00 2.57
402 1539 0.901827 TGCCTGGATAACTCGCTCAA 59.098 50.000 0.00 0.00 0.00 3.02
403 1540 0.461548 CTGCCTGGATAACTCGCTCA 59.538 55.000 0.00 0.00 0.00 4.26
404 1541 0.249657 CCTGCCTGGATAACTCGCTC 60.250 60.000 0.00 0.00 38.35 5.03
405 1542 1.826024 CCTGCCTGGATAACTCGCT 59.174 57.895 0.00 0.00 38.35 4.93
406 1543 1.889573 GCCTGCCTGGATAACTCGC 60.890 63.158 0.00 0.00 38.35 5.03
407 1544 0.107703 TTGCCTGCCTGGATAACTCG 60.108 55.000 0.00 0.00 38.35 4.18
480 2521 1.080366 CTGCTACCGTTACGTGCCA 60.080 57.895 3.52 0.00 0.00 4.92
502 2543 1.100510 CTCAGGACGTGGACCGAATA 58.899 55.000 0.00 0.00 40.70 1.75
512 2553 0.966920 ATTTCGTGGACTCAGGACGT 59.033 50.000 0.00 0.00 37.49 4.34
519 2564 1.439679 AGCGGAAATTTCGTGGACTC 58.560 50.000 11.95 0.00 0.00 3.36
557 2602 1.227674 GCATGGGTCAGTCCGGATC 60.228 63.158 7.81 0.93 37.00 3.36
669 2746 2.586357 GCGCTCCCCTGAACGATC 60.586 66.667 0.00 0.00 31.82 3.69
779 2895 2.035940 AGAGTTCTCGGCCGGACT 59.964 61.111 27.83 25.09 0.00 3.85
780 2896 1.310933 TACAGAGTTCTCGGCCGGAC 61.311 60.000 27.83 20.84 0.00 4.79
788 2904 3.614616 CGAAATGCCACTACAGAGTTCTC 59.385 47.826 0.00 0.00 31.73 2.87
795 2911 2.602878 ACGTACGAAATGCCACTACAG 58.397 47.619 24.41 0.00 0.00 2.74
810 2927 3.736530 ATCACTCACTCACGTACGTAC 57.263 47.619 22.34 15.90 0.00 3.67
811 2928 3.308053 GCTATCACTCACTCACGTACGTA 59.692 47.826 22.34 8.85 0.00 3.57
812 2929 2.095532 GCTATCACTCACTCACGTACGT 59.904 50.000 16.72 16.72 0.00 3.57
813 2930 2.095372 TGCTATCACTCACTCACGTACG 59.905 50.000 15.01 15.01 0.00 3.67
814 2931 3.759527 TGCTATCACTCACTCACGTAC 57.240 47.619 0.00 0.00 0.00 3.67
815 2932 4.495844 CGATTGCTATCACTCACTCACGTA 60.496 45.833 8.85 0.00 0.00 3.57
816 2933 3.732169 CGATTGCTATCACTCACTCACGT 60.732 47.826 8.85 0.00 0.00 4.49
821 2941 1.845266 CGCGATTGCTATCACTCACT 58.155 50.000 0.00 0.00 39.65 3.41
876 2996 4.821589 CCGGAGCTCGTGGAAGCC 62.822 72.222 16.53 0.00 43.56 4.35
892 3012 5.415221 CCTATTTATAGTGCTCTAGCTGCC 58.585 45.833 0.00 0.00 42.66 4.85
899 3040 2.028020 GGCGCCCTATTTATAGTGCTCT 60.028 50.000 18.11 0.00 32.56 4.09
916 3057 1.963338 GAGATGCATAGGGTGGCGC 60.963 63.158 0.00 0.00 0.00 6.53
950 3096 7.386299 GTGACTAGACAACTCTTTTGATGTGAT 59.614 37.037 0.00 0.00 0.00 3.06
951 3097 6.701841 GTGACTAGACAACTCTTTTGATGTGA 59.298 38.462 0.00 0.00 0.00 3.58
952 3098 6.479990 TGTGACTAGACAACTCTTTTGATGTG 59.520 38.462 0.00 0.00 0.00 3.21
953 3099 6.582636 TGTGACTAGACAACTCTTTTGATGT 58.417 36.000 0.00 0.00 0.00 3.06
991 3144 3.512516 GGCGGCCATTGCTGTCTC 61.513 66.667 15.62 0.00 45.29 3.36
1116 3269 2.933287 ATGGACGCCAGGTTGGGA 60.933 61.111 4.90 0.00 38.19 4.37
1287 3467 8.648097 CACATCACAAATGTCAGTACTTACTAC 58.352 37.037 8.59 0.00 34.13 2.73
1302 3483 2.355716 CCCCTACCGACACATCACAAAT 60.356 50.000 0.00 0.00 0.00 2.32
1307 3488 0.543410 ACACCCCTACCGACACATCA 60.543 55.000 0.00 0.00 0.00 3.07
1318 3514 2.849096 ATCGAGCCGTCACACCCCTA 62.849 60.000 0.00 0.00 0.00 3.53
1434 3630 4.007644 CACGCAGCCTCCACCTGA 62.008 66.667 0.00 0.00 32.03 3.86
1527 3727 2.665185 ACCGTTGAAGCTGGTCGC 60.665 61.111 0.00 0.00 39.57 5.19
1567 3771 1.767289 AGTAAGTGCTGAACGTGTCG 58.233 50.000 0.00 0.00 0.00 4.35
1568 3772 2.348591 GCAAGTAAGTGCTGAACGTGTC 60.349 50.000 0.00 0.00 41.51 3.67
1577 3784 0.038744 ATGGCTGGCAAGTAAGTGCT 59.961 50.000 8.35 0.00 44.31 4.40
1632 3848 3.787001 CTCCAGTTCGGGCCTCCC 61.787 72.222 0.84 0.00 41.09 4.30
2182 4404 5.459762 GCACACTTGTTACGTGTACTCTTTA 59.540 40.000 0.00 0.00 43.26 1.85
2185 4407 3.067742 AGCACACTTGTTACGTGTACTCT 59.932 43.478 0.00 0.00 43.26 3.24
2263 4486 7.399523 GTTCGGTGTTCTTCATTACATACATC 58.600 38.462 0.00 0.00 0.00 3.06
2272 4495 3.492011 GTGTACGTTCGGTGTTCTTCATT 59.508 43.478 0.00 0.00 0.00 2.57
2311 4542 1.071128 TTTACACGTTCACCCCGGG 59.929 57.895 15.80 15.80 34.16 5.73
2338 4569 9.405587 CTTTTATGACCAACGTACATTTTGATT 57.594 29.630 0.00 0.00 0.00 2.57
2429 6185 7.066163 GTGATTAGTGAACACCATCATCATCAA 59.934 37.037 15.60 0.00 35.35 2.57
2432 6188 6.656902 AGTGATTAGTGAACACCATCATCAT 58.343 36.000 15.60 7.13 35.35 2.45
2433 6189 6.053632 AGTGATTAGTGAACACCATCATCA 57.946 37.500 15.60 9.63 35.35 3.07
2434 6190 7.268586 AGTAGTGATTAGTGAACACCATCATC 58.731 38.462 15.60 11.37 35.35 2.92
2435 6191 7.187824 AGTAGTGATTAGTGAACACCATCAT 57.812 36.000 15.60 10.13 35.35 2.45
2436 6192 6.605471 AGTAGTGATTAGTGAACACCATCA 57.395 37.500 11.12 11.12 35.47 3.07
2437 6193 7.653713 CCATAGTAGTGATTAGTGAACACCATC 59.346 40.741 1.11 4.91 35.47 3.51
2440 6196 6.875076 ACCATAGTAGTGATTAGTGAACACC 58.125 40.000 1.11 0.00 35.47 4.16
2441 6197 7.201530 GCAACCATAGTAGTGATTAGTGAACAC 60.202 40.741 0.00 0.00 35.15 3.32
2445 6201 6.379988 TCAGCAACCATAGTAGTGATTAGTGA 59.620 38.462 0.00 0.00 0.00 3.41
2447 6203 6.791867 TCAGCAACCATAGTAGTGATTAGT 57.208 37.500 0.00 0.00 0.00 2.24
2448 6204 7.928167 TCAATCAGCAACCATAGTAGTGATTAG 59.072 37.037 0.00 0.00 32.28 1.73
2450 6206 6.653020 TCAATCAGCAACCATAGTAGTGATT 58.347 36.000 0.00 0.00 33.38 2.57
2451 6207 6.239217 TCAATCAGCAACCATAGTAGTGAT 57.761 37.500 0.00 0.00 0.00 3.06
2458 6217 3.635373 AGCCAATCAATCAGCAACCATAG 59.365 43.478 0.00 0.00 0.00 2.23
2465 6225 3.069872 ACAAACAAGCCAATCAATCAGCA 59.930 39.130 0.00 0.00 0.00 4.41
2580 6347 5.163804 ACGCTAACATATCGATTGTTTTGCA 60.164 36.000 26.06 14.83 38.26 4.08
2584 6351 7.586300 GCATTTACGCTAACATATCGATTGTTT 59.414 33.333 22.22 12.40 38.26 2.83
2593 6360 6.210784 TCTCCTAGGCATTTACGCTAACATAT 59.789 38.462 2.96 0.00 0.00 1.78
2594 6361 5.537295 TCTCCTAGGCATTTACGCTAACATA 59.463 40.000 2.96 0.00 0.00 2.29
2595 6362 4.344102 TCTCCTAGGCATTTACGCTAACAT 59.656 41.667 2.96 0.00 0.00 2.71
2596 6363 3.702548 TCTCCTAGGCATTTACGCTAACA 59.297 43.478 2.96 0.00 0.00 2.41
2597 6364 4.049869 GTCTCCTAGGCATTTACGCTAAC 58.950 47.826 2.96 0.00 0.00 2.34
2598 6365 3.243301 CGTCTCCTAGGCATTTACGCTAA 60.243 47.826 2.96 0.00 0.00 3.09
2599 6366 2.292569 CGTCTCCTAGGCATTTACGCTA 59.707 50.000 2.96 0.00 0.00 4.26
2600 6367 1.067212 CGTCTCCTAGGCATTTACGCT 59.933 52.381 2.96 0.00 0.00 5.07
2601 6368 1.488527 CGTCTCCTAGGCATTTACGC 58.511 55.000 2.96 0.00 0.00 4.42
2602 6369 2.135664 CCGTCTCCTAGGCATTTACG 57.864 55.000 2.96 8.80 0.00 3.18
2631 6398 1.613630 TCCTCCTGCTTCCTCACCC 60.614 63.158 0.00 0.00 0.00 4.61
2633 6400 1.621672 CCCTCCTCCTGCTTCCTCAC 61.622 65.000 0.00 0.00 0.00 3.51
2897 6664 9.914131 CTCATTGATAATTACTCGTCAATCCTA 57.086 33.333 8.44 0.33 38.77 2.94
2898 6665 8.642432 TCTCATTGATAATTACTCGTCAATCCT 58.358 33.333 8.44 0.00 38.77 3.24
2899 6666 8.818141 TCTCATTGATAATTACTCGTCAATCC 57.182 34.615 8.44 0.00 38.77 3.01
2905 6672 9.915629 GGTCTAATCTCATTGATAATTACTCGT 57.084 33.333 0.00 0.00 34.45 4.18
2906 6673 9.914131 TGGTCTAATCTCATTGATAATTACTCG 57.086 33.333 0.00 0.00 34.45 4.18
2919 6686 8.666573 CGAGTACGTATATTGGTCTAATCTCAT 58.333 37.037 0.00 0.00 34.56 2.90
2920 6687 7.118825 CCGAGTACGTATATTGGTCTAATCTCA 59.881 40.741 0.00 0.00 37.88 3.27
2921 6688 7.462731 CCGAGTACGTATATTGGTCTAATCTC 58.537 42.308 0.00 0.00 37.88 2.75
2922 6689 6.128063 GCCGAGTACGTATATTGGTCTAATCT 60.128 42.308 15.02 0.00 37.88 2.40
2923 6690 6.026513 GCCGAGTACGTATATTGGTCTAATC 58.973 44.000 15.02 0.00 37.88 1.75
2924 6691 5.105997 GGCCGAGTACGTATATTGGTCTAAT 60.106 44.000 15.02 0.00 37.88 1.73
2925 6692 4.216257 GGCCGAGTACGTATATTGGTCTAA 59.784 45.833 15.02 0.00 37.88 2.10
2926 6693 3.753272 GGCCGAGTACGTATATTGGTCTA 59.247 47.826 15.02 0.00 37.88 2.59
2927 6694 2.555757 GGCCGAGTACGTATATTGGTCT 59.444 50.000 15.02 0.16 37.88 3.85
2928 6695 2.352127 GGGCCGAGTACGTATATTGGTC 60.352 54.545 15.02 13.29 37.88 4.02
2929 6696 1.615392 GGGCCGAGTACGTATATTGGT 59.385 52.381 15.02 0.00 37.88 3.67
2930 6697 1.067354 GGGGCCGAGTACGTATATTGG 60.067 57.143 0.00 5.63 37.88 3.16
2931 6698 1.067354 GGGGGCCGAGTACGTATATTG 60.067 57.143 0.00 0.00 37.88 1.90
2932 6699 1.260544 GGGGGCCGAGTACGTATATT 58.739 55.000 0.00 0.00 37.88 1.28
2933 6700 2.967270 GGGGGCCGAGTACGTATAT 58.033 57.895 0.00 0.00 37.88 0.86
2934 6701 4.500265 GGGGGCCGAGTACGTATA 57.500 61.111 0.00 0.00 37.88 1.47
2949 6716 2.180276 CCAGGATTCGAGTATAGGGGG 58.820 57.143 0.00 0.00 0.00 5.40
2950 6717 1.550976 GCCAGGATTCGAGTATAGGGG 59.449 57.143 0.00 0.00 0.00 4.79
2951 6718 2.494073 GAGCCAGGATTCGAGTATAGGG 59.506 54.545 0.00 0.00 0.00 3.53
2952 6719 2.494073 GGAGCCAGGATTCGAGTATAGG 59.506 54.545 0.00 0.00 0.00 2.57
2953 6720 3.057174 GTGGAGCCAGGATTCGAGTATAG 60.057 52.174 0.00 0.00 0.00 1.31
2954 6721 2.891580 GTGGAGCCAGGATTCGAGTATA 59.108 50.000 0.00 0.00 0.00 1.47
2955 6722 1.689273 GTGGAGCCAGGATTCGAGTAT 59.311 52.381 0.00 0.00 0.00 2.12
2956 6723 1.112113 GTGGAGCCAGGATTCGAGTA 58.888 55.000 0.00 0.00 0.00 2.59
2957 6724 1.617947 GGTGGAGCCAGGATTCGAGT 61.618 60.000 0.00 0.00 37.17 4.18
2958 6725 1.144936 GGTGGAGCCAGGATTCGAG 59.855 63.158 0.00 0.00 37.17 4.04
2959 6726 1.612146 TGGTGGAGCCAGGATTCGA 60.612 57.895 0.00 0.00 43.61 3.71
2960 6727 2.989639 TGGTGGAGCCAGGATTCG 59.010 61.111 0.00 0.00 43.61 3.34
2977 6744 2.063015 TTGTTCCCATCACCCGCAGT 62.063 55.000 0.00 0.00 0.00 4.40
2978 6745 0.893270 TTTGTTCCCATCACCCGCAG 60.893 55.000 0.00 0.00 0.00 5.18
2979 6746 0.251564 ATTTGTTCCCATCACCCGCA 60.252 50.000 0.00 0.00 0.00 5.69
2980 6747 0.455815 GATTTGTTCCCATCACCCGC 59.544 55.000 0.00 0.00 0.00 6.13
2981 6748 1.832883 TGATTTGTTCCCATCACCCG 58.167 50.000 0.00 0.00 0.00 5.28
2982 6749 3.364549 TCATGATTTGTTCCCATCACCC 58.635 45.455 0.00 0.00 32.19 4.61
2983 6750 4.019174 ACTCATGATTTGTTCCCATCACC 58.981 43.478 0.00 0.00 32.19 4.02
2984 6751 4.142315 CCACTCATGATTTGTTCCCATCAC 60.142 45.833 0.00 0.00 32.19 3.06
2985 6752 4.018490 CCACTCATGATTTGTTCCCATCA 58.982 43.478 0.00 0.00 33.92 3.07
2986 6753 3.382546 CCCACTCATGATTTGTTCCCATC 59.617 47.826 0.00 0.00 0.00 3.51
2987 6754 3.011595 TCCCACTCATGATTTGTTCCCAT 59.988 43.478 0.00 0.00 0.00 4.00
2988 6755 2.378208 TCCCACTCATGATTTGTTCCCA 59.622 45.455 0.00 0.00 0.00 4.37
2989 6756 3.085952 TCCCACTCATGATTTGTTCCC 57.914 47.619 0.00 0.00 0.00 3.97
2990 6757 5.221126 GCTTATCCCACTCATGATTTGTTCC 60.221 44.000 0.00 0.00 0.00 3.62
2991 6758 5.591877 AGCTTATCCCACTCATGATTTGTTC 59.408 40.000 0.00 0.00 0.00 3.18
2992 6759 5.513233 AGCTTATCCCACTCATGATTTGTT 58.487 37.500 0.00 0.00 0.00 2.83
2993 6760 5.121380 AGCTTATCCCACTCATGATTTGT 57.879 39.130 0.00 0.00 0.00 2.83
2994 6761 6.095860 TCAAAGCTTATCCCACTCATGATTTG 59.904 38.462 0.00 0.00 0.00 2.32
2995 6762 6.189859 TCAAAGCTTATCCCACTCATGATTT 58.810 36.000 0.00 0.00 0.00 2.17
2996 6763 5.759059 TCAAAGCTTATCCCACTCATGATT 58.241 37.500 0.00 0.00 0.00 2.57
2997 6764 5.104193 ACTCAAAGCTTATCCCACTCATGAT 60.104 40.000 0.00 0.00 0.00 2.45
2998 6765 4.225942 ACTCAAAGCTTATCCCACTCATGA 59.774 41.667 0.00 0.00 0.00 3.07
2999 6766 4.334759 CACTCAAAGCTTATCCCACTCATG 59.665 45.833 0.00 0.00 0.00 3.07
3000 6767 4.521146 CACTCAAAGCTTATCCCACTCAT 58.479 43.478 0.00 0.00 0.00 2.90
3001 6768 3.307691 CCACTCAAAGCTTATCCCACTCA 60.308 47.826 0.00 0.00 0.00 3.41
3002 6769 3.274288 CCACTCAAAGCTTATCCCACTC 58.726 50.000 0.00 0.00 0.00 3.51
3003 6770 2.025887 CCCACTCAAAGCTTATCCCACT 60.026 50.000 0.00 0.00 0.00 4.00
3004 6771 2.369394 CCCACTCAAAGCTTATCCCAC 58.631 52.381 0.00 0.00 0.00 4.61
3005 6772 1.284785 CCCCACTCAAAGCTTATCCCA 59.715 52.381 0.00 0.00 0.00 4.37
3006 6773 1.410224 CCCCCACTCAAAGCTTATCCC 60.410 57.143 0.00 0.00 0.00 3.85
3007 6774 1.564348 TCCCCCACTCAAAGCTTATCC 59.436 52.381 0.00 0.00 0.00 2.59
3008 6775 2.924421 CTCCCCCACTCAAAGCTTATC 58.076 52.381 0.00 0.00 0.00 1.75
3009 6776 1.064389 GCTCCCCCACTCAAAGCTTAT 60.064 52.381 0.00 0.00 0.00 1.73
3010 6777 0.328258 GCTCCCCCACTCAAAGCTTA 59.672 55.000 0.00 0.00 0.00 3.09
3011 6778 1.075659 GCTCCCCCACTCAAAGCTT 59.924 57.895 0.00 0.00 0.00 3.74
3012 6779 2.759795 GCTCCCCCACTCAAAGCT 59.240 61.111 0.00 0.00 0.00 3.74
3013 6780 2.361737 GGCTCCCCCACTCAAAGC 60.362 66.667 0.00 0.00 0.00 3.51
3014 6781 1.301293 GAGGCTCCCCCACTCAAAG 59.699 63.158 2.15 0.00 35.39 2.77
3015 6782 2.592993 CGAGGCTCCCCCACTCAAA 61.593 63.158 9.32 0.00 35.39 2.69
3016 6783 3.003173 CGAGGCTCCCCCACTCAA 61.003 66.667 9.32 0.00 35.39 3.02
3025 6792 3.859414 ATGCTCCAGCGAGGCTCC 61.859 66.667 9.32 1.69 45.83 4.70
3026 6793 2.588314 CATGCTCCAGCGAGGCTC 60.588 66.667 3.87 3.87 45.83 4.70
3027 6794 3.382803 GACATGCTCCAGCGAGGCT 62.383 63.158 0.00 0.00 45.83 4.58
3028 6795 2.894387 GACATGCTCCAGCGAGGC 60.894 66.667 0.00 0.00 45.83 4.70
3029 6796 1.078918 TTGACATGCTCCAGCGAGG 60.079 57.895 0.00 0.00 45.83 4.63
3030 6797 1.690283 CGTTGACATGCTCCAGCGAG 61.690 60.000 11.97 0.00 45.83 5.03
3031 6798 1.737735 CGTTGACATGCTCCAGCGA 60.738 57.895 11.97 0.00 45.83 4.93
3032 6799 2.743752 CCGTTGACATGCTCCAGCG 61.744 63.158 10.88 10.88 45.83 5.18
3033 6800 1.672356 ACCGTTGACATGCTCCAGC 60.672 57.895 0.00 0.00 42.50 4.85
3034 6801 0.320683 TCACCGTTGACATGCTCCAG 60.321 55.000 0.00 0.00 0.00 3.86
3035 6802 1.751563 TCACCGTTGACATGCTCCA 59.248 52.632 0.00 0.00 0.00 3.86
3036 6803 4.693532 TCACCGTTGACATGCTCC 57.306 55.556 0.00 0.00 0.00 4.70
3044 6811 0.036164 CATTCCAGGGTCACCGTTGA 59.964 55.000 0.00 0.00 43.47 3.18
3045 6812 0.250727 ACATTCCAGGGTCACCGTTG 60.251 55.000 0.00 0.00 43.47 4.10
3046 6813 0.250727 CACATTCCAGGGTCACCGTT 60.251 55.000 0.00 0.00 43.47 4.44
3047 6814 1.374947 CACATTCCAGGGTCACCGT 59.625 57.895 0.00 0.00 43.47 4.83
3048 6815 2.040544 GCACATTCCAGGGTCACCG 61.041 63.158 0.00 0.00 43.47 4.94
3049 6816 1.678970 GGCACATTCCAGGGTCACC 60.679 63.158 0.00 0.00 0.00 4.02
3050 6817 1.678970 GGGCACATTCCAGGGTCAC 60.679 63.158 0.00 0.00 0.00 3.67
3051 6818 2.763215 GGGCACATTCCAGGGTCA 59.237 61.111 0.00 0.00 0.00 4.02
3052 6819 2.438434 CGGGCACATTCCAGGGTC 60.438 66.667 0.00 0.00 0.00 4.46
3053 6820 4.047125 CCGGGCACATTCCAGGGT 62.047 66.667 0.00 0.00 37.75 4.34
3054 6821 2.675242 TACCGGGCACATTCCAGGG 61.675 63.158 6.32 0.00 44.45 4.45
3055 6822 1.451387 GTACCGGGCACATTCCAGG 60.451 63.158 6.32 0.00 45.46 4.45
3056 6823 0.107214 ATGTACCGGGCACATTCCAG 60.107 55.000 15.97 0.00 32.72 3.86
3057 6824 0.107410 GATGTACCGGGCACATTCCA 60.107 55.000 20.91 0.74 36.76 3.53
3058 6825 1.157870 CGATGTACCGGGCACATTCC 61.158 60.000 20.91 11.10 36.76 3.01
3059 6826 0.461339 ACGATGTACCGGGCACATTC 60.461 55.000 20.91 14.26 36.76 2.67
3060 6827 0.461339 GACGATGTACCGGGCACATT 60.461 55.000 20.91 9.59 36.76 2.71
3061 6828 1.143183 GACGATGTACCGGGCACAT 59.857 57.895 20.31 20.31 39.31 3.21
3062 6829 2.574929 GACGATGTACCGGGCACA 59.425 61.111 12.88 12.88 0.00 4.57
3063 6830 2.202837 GGACGATGTACCGGGCAC 60.203 66.667 6.32 3.56 0.00 5.01
3064 6831 2.680707 TGGACGATGTACCGGGCA 60.681 61.111 6.32 4.64 0.00 5.36
3065 6832 2.202837 GTGGACGATGTACCGGGC 60.203 66.667 6.32 0.00 0.00 6.13
3066 6833 2.497770 GGTGGACGATGTACCGGG 59.502 66.667 6.32 0.00 0.00 5.73
3067 6834 1.890625 TTGGGTGGACGATGTACCGG 61.891 60.000 0.00 0.00 35.31 5.28
3068 6835 0.177141 ATTGGGTGGACGATGTACCG 59.823 55.000 0.00 0.00 35.31 4.02
3069 6836 1.485066 AGATTGGGTGGACGATGTACC 59.515 52.381 0.00 0.00 0.00 3.34
3070 6837 2.981859 AGATTGGGTGGACGATGTAC 57.018 50.000 0.00 0.00 0.00 2.90
3071 6838 3.992943 AAAGATTGGGTGGACGATGTA 57.007 42.857 0.00 0.00 0.00 2.29
3072 6839 2.879103 AAAGATTGGGTGGACGATGT 57.121 45.000 0.00 0.00 0.00 3.06
3073 6840 5.637006 TTAAAAAGATTGGGTGGACGATG 57.363 39.130 0.00 0.00 0.00 3.84
3074 6841 4.157840 GCTTAAAAAGATTGGGTGGACGAT 59.842 41.667 0.00 0.00 0.00 3.73
3075 6842 3.504520 GCTTAAAAAGATTGGGTGGACGA 59.495 43.478 0.00 0.00 0.00 4.20
3076 6843 3.366985 GGCTTAAAAAGATTGGGTGGACG 60.367 47.826 0.00 0.00 0.00 4.79
3077 6844 3.366985 CGGCTTAAAAAGATTGGGTGGAC 60.367 47.826 0.00 0.00 0.00 4.02
3078 6845 2.823154 CGGCTTAAAAAGATTGGGTGGA 59.177 45.455 0.00 0.00 0.00 4.02
3079 6846 2.823154 TCGGCTTAAAAAGATTGGGTGG 59.177 45.455 0.00 0.00 0.00 4.61
3080 6847 4.513198 TTCGGCTTAAAAAGATTGGGTG 57.487 40.909 0.00 0.00 0.00 4.61
3081 6848 4.262292 GGTTTCGGCTTAAAAAGATTGGGT 60.262 41.667 0.00 0.00 0.00 4.51
3082 6849 4.242475 GGTTTCGGCTTAAAAAGATTGGG 58.758 43.478 0.00 0.00 0.00 4.12
3083 6850 3.917985 CGGTTTCGGCTTAAAAAGATTGG 59.082 43.478 0.00 0.00 0.00 3.16
3084 6851 4.542735 ACGGTTTCGGCTTAAAAAGATTG 58.457 39.130 0.00 0.00 41.39 2.67
3085 6852 4.841443 ACGGTTTCGGCTTAAAAAGATT 57.159 36.364 0.00 0.00 41.39 2.40
3086 6853 5.240121 TCTACGGTTTCGGCTTAAAAAGAT 58.760 37.500 0.00 0.00 41.39 2.40
3087 6854 4.630111 TCTACGGTTTCGGCTTAAAAAGA 58.370 39.130 0.00 0.00 41.39 2.52
3088 6855 4.996062 TCTACGGTTTCGGCTTAAAAAG 57.004 40.909 0.00 0.00 41.39 2.27
3089 6856 4.574013 TGTTCTACGGTTTCGGCTTAAAAA 59.426 37.500 0.00 0.00 41.39 1.94
3090 6857 4.125703 TGTTCTACGGTTTCGGCTTAAAA 58.874 39.130 0.00 0.00 41.39 1.52
3091 6858 3.726607 TGTTCTACGGTTTCGGCTTAAA 58.273 40.909 0.00 0.00 41.39 1.52
3092 6859 3.383620 TGTTCTACGGTTTCGGCTTAA 57.616 42.857 0.00 0.00 41.39 1.85
3093 6860 3.383620 TTGTTCTACGGTTTCGGCTTA 57.616 42.857 0.00 0.00 41.39 3.09
3094 6861 2.243602 TTGTTCTACGGTTTCGGCTT 57.756 45.000 0.00 0.00 41.39 4.35
3095 6862 2.467566 ATTGTTCTACGGTTTCGGCT 57.532 45.000 0.00 0.00 41.39 5.52
3096 6863 3.256558 ACTATTGTTCTACGGTTTCGGC 58.743 45.455 0.00 0.00 41.39 5.54
3097 6864 5.851047 AAACTATTGTTCTACGGTTTCGG 57.149 39.130 0.00 0.00 36.65 4.30
3098 6865 6.944400 CGTAAAACTATTGTTCTACGGTTTCG 59.056 38.462 15.28 2.54 44.59 3.46
3107 6874 9.287373 TGGAAAATACCGTAAAACTATTGTTCT 57.713 29.630 0.00 0.00 34.96 3.01
3117 6884 9.500864 GCGTTATTAATGGAAAATACCGTAAAA 57.499 29.630 0.00 0.00 30.27 1.52
3118 6885 8.671921 TGCGTTATTAATGGAAAATACCGTAAA 58.328 29.630 0.00 0.00 30.27 2.01
3119 6886 8.206325 TGCGTTATTAATGGAAAATACCGTAA 57.794 30.769 0.00 0.00 30.27 3.18
3120 6887 7.783090 TGCGTTATTAATGGAAAATACCGTA 57.217 32.000 0.00 0.00 30.27 4.02
3121 6888 6.680874 TGCGTTATTAATGGAAAATACCGT 57.319 33.333 0.00 0.00 30.27 4.83
3122 6889 7.911205 TCTTTGCGTTATTAATGGAAAATACCG 59.089 33.333 13.95 5.21 37.29 4.02
3123 6890 9.233232 CTCTTTGCGTTATTAATGGAAAATACC 57.767 33.333 13.95 0.00 37.29 2.73
3124 6891 9.783256 ACTCTTTGCGTTATTAATGGAAAATAC 57.217 29.630 13.95 0.00 37.29 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.