Multiple sequence alignment - TraesCS7A01G352400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G352400 chr7A 100.000 2735 0 0 1 2735 516104899 516102165 0.000000e+00 5051.0
1 TraesCS7A01G352400 chr7A 73.391 233 54 7 1470 1698 8292793 8293021 2.260000e-11 80.5
2 TraesCS7A01G352400 chr6A 97.350 1019 27 0 1717 2735 456530184 456531202 0.000000e+00 1733.0
3 TraesCS7A01G352400 chr6A 96.457 1016 36 0 1720 2735 456522205 456523220 0.000000e+00 1677.0
4 TraesCS7A01G352400 chr6A 100.000 40 0 0 727 766 607393995 607394034 1.050000e-09 75.0
5 TraesCS7A01G352400 chr6A 72.956 159 41 2 1541 1698 553143052 553142895 1.000000e-03 54.7
6 TraesCS7A01G352400 chr1A 97.047 1016 30 0 1720 2735 250400589 250399574 0.000000e+00 1711.0
7 TraesCS7A01G352400 chr1A 96.752 1016 32 1 1720 2735 250394929 250393915 0.000000e+00 1692.0
8 TraesCS7A01G352400 chr1A 85.774 956 129 6 769 1719 29981311 29980358 0.000000e+00 1005.0
9 TraesCS7A01G352400 chrUn 96.850 1016 31 1 1720 2735 299729758 299728744 0.000000e+00 1698.0
10 TraesCS7A01G352400 chr2A 96.850 1016 31 1 1720 2735 662873463 662872449 0.000000e+00 1698.0
11 TraesCS7A01G352400 chr2A 96.752 1016 32 1 1720 2735 662884026 662883012 0.000000e+00 1692.0
12 TraesCS7A01G352400 chr2A 88.972 934 85 18 1809 2733 409725433 409726357 0.000000e+00 1138.0
13 TraesCS7A01G352400 chr2A 83.634 721 108 8 769 1482 561140567 561141284 0.000000e+00 669.0
14 TraesCS7A01G352400 chr2A 90.244 164 15 1 1719 1881 739037122 739037285 2.130000e-51 213.0
15 TraesCS7A01G352400 chr2A 94.444 54 3 0 31 84 749057530 749057477 1.750000e-12 84.2
16 TraesCS7A01G352400 chr4A 88.141 936 92 19 1809 2735 248061257 248062182 0.000000e+00 1096.0
17 TraesCS7A01G352400 chr2D 83.699 957 145 8 769 1719 612481654 612480703 0.000000e+00 893.0
18 TraesCS7A01G352400 chr7B 91.274 573 50 0 1147 1719 513971103 513971675 0.000000e+00 782.0
19 TraesCS7A01G352400 chr7B 82.209 652 78 9 83 732 504812356 504812971 6.710000e-146 527.0
20 TraesCS7A01G352400 chr6B 81.386 967 152 16 768 1719 15838104 15839057 0.000000e+00 763.0
21 TraesCS7A01G352400 chr5D 85.000 680 69 17 769 1443 353806443 353807094 0.000000e+00 660.0
22 TraesCS7A01G352400 chr5D 88.328 317 37 0 1403 1719 353807096 353807412 5.530000e-102 381.0
23 TraesCS7A01G352400 chr5D 85.227 88 12 1 1 88 438209098 438209012 3.750000e-14 89.8
24 TraesCS7A01G352400 chr7D 83.554 377 40 9 333 709 479075871 479076225 1.570000e-87 333.0
25 TraesCS7A01G352400 chr7D 90.090 111 8 3 83 191 479036286 479036395 1.020000e-29 141.0
26 TraesCS7A01G352400 chr4B 79.087 416 58 16 771 1171 405935480 405935079 2.700000e-65 259.0
27 TraesCS7A01G352400 chr4B 98.851 87 1 0 1 87 593346327 593346241 3.650000e-34 156.0
28 TraesCS7A01G352400 chr3A 90.244 164 14 2 1717 1880 163948245 163948406 2.130000e-51 213.0
29 TraesCS7A01G352400 chr3B 100.000 84 0 0 1 84 47022578 47022661 3.650000e-34 156.0
30 TraesCS7A01G352400 chr3B 94.681 94 4 1 1 93 801307583 801307490 7.890000e-31 145.0
31 TraesCS7A01G352400 chr3B 89.024 82 1 3 4 85 820004480 820004407 8.060000e-16 95.3
32 TraesCS7A01G352400 chr3B 74.138 232 54 6 1470 1698 588173269 588173497 1.040000e-14 91.6
33 TraesCS7A01G352400 chr5A 95.238 84 2 2 2 84 540571290 540571208 6.150000e-27 132.0
34 TraesCS7A01G352400 chr4D 77.670 206 33 12 168 365 81906962 81907162 2.230000e-21 113.0
35 TraesCS7A01G352400 chr1B 72.727 231 59 4 1470 1698 89371134 89371362 1.050000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G352400 chr7A 516102165 516104899 2734 True 5051.0 5051 100.000 1 2735 1 chr7A.!!$R1 2734
1 TraesCS7A01G352400 chr6A 456530184 456531202 1018 False 1733.0 1733 97.350 1717 2735 1 chr6A.!!$F2 1018
2 TraesCS7A01G352400 chr6A 456522205 456523220 1015 False 1677.0 1677 96.457 1720 2735 1 chr6A.!!$F1 1015
3 TraesCS7A01G352400 chr1A 250399574 250400589 1015 True 1711.0 1711 97.047 1720 2735 1 chr1A.!!$R3 1015
4 TraesCS7A01G352400 chr1A 250393915 250394929 1014 True 1692.0 1692 96.752 1720 2735 1 chr1A.!!$R2 1015
5 TraesCS7A01G352400 chr1A 29980358 29981311 953 True 1005.0 1005 85.774 769 1719 1 chr1A.!!$R1 950
6 TraesCS7A01G352400 chrUn 299728744 299729758 1014 True 1698.0 1698 96.850 1720 2735 1 chrUn.!!$R1 1015
7 TraesCS7A01G352400 chr2A 662872449 662873463 1014 True 1698.0 1698 96.850 1720 2735 1 chr2A.!!$R1 1015
8 TraesCS7A01G352400 chr2A 662883012 662884026 1014 True 1692.0 1692 96.752 1720 2735 1 chr2A.!!$R2 1015
9 TraesCS7A01G352400 chr2A 409725433 409726357 924 False 1138.0 1138 88.972 1809 2733 1 chr2A.!!$F1 924
10 TraesCS7A01G352400 chr2A 561140567 561141284 717 False 669.0 669 83.634 769 1482 1 chr2A.!!$F2 713
11 TraesCS7A01G352400 chr4A 248061257 248062182 925 False 1096.0 1096 88.141 1809 2735 1 chr4A.!!$F1 926
12 TraesCS7A01G352400 chr2D 612480703 612481654 951 True 893.0 893 83.699 769 1719 1 chr2D.!!$R1 950
13 TraesCS7A01G352400 chr7B 513971103 513971675 572 False 782.0 782 91.274 1147 1719 1 chr7B.!!$F2 572
14 TraesCS7A01G352400 chr7B 504812356 504812971 615 False 527.0 527 82.209 83 732 1 chr7B.!!$F1 649
15 TraesCS7A01G352400 chr6B 15838104 15839057 953 False 763.0 763 81.386 768 1719 1 chr6B.!!$F1 951
16 TraesCS7A01G352400 chr5D 353806443 353807412 969 False 520.5 660 86.664 769 1719 2 chr5D.!!$F1 950

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 681 0.028902 GTTGGTCGAACTGGTTGCAC 59.971 55.0 0.33 0.0 0.00 4.57 F
720 721 0.034059 CACATAGAGCATCCCCCGAC 59.966 60.0 0.00 0.0 33.66 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1640 0.178932 AACCTTCCTTTTGCCCTCCC 60.179 55.0 0.00 0.0 0.0 4.30 R
1753 1810 0.250510 TGACGTGGCACCATTAGCAA 60.251 50.0 12.86 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.208632 GGAGTGCATCCGAACAGG 57.791 61.111 0.00 0.00 38.67 4.00
80 81 2.109126 GGAGTGCATCCGAACAGGC 61.109 63.158 0.00 0.00 38.67 4.85
81 82 2.045926 AGTGCATCCGAACAGGCC 60.046 61.111 0.00 0.00 40.77 5.19
90 91 3.271055 TCCGAACAGGCCCTTAATTAC 57.729 47.619 0.00 0.00 40.77 1.89
133 134 8.417273 TCCTTTCGAATGGTATGAGATATACA 57.583 34.615 24.70 3.23 0.00 2.29
181 182 9.428097 AGAAAATTCCATGAAGCTTTATTGAAC 57.572 29.630 16.79 7.31 0.00 3.18
182 183 9.428097 GAAAATTCCATGAAGCTTTATTGAACT 57.572 29.630 16.79 6.54 0.00 3.01
187 188 6.660521 TCCATGAAGCTTTATTGAACTGTCAT 59.339 34.615 0.00 0.00 32.48 3.06
203 204 6.816134 ACTGTCATAATGTTTACACATGCA 57.184 33.333 0.00 0.00 43.34 3.96
221 222 2.752354 TGCAAATAAAGATCACCGGGTG 59.248 45.455 21.27 21.27 34.45 4.61
223 224 2.752354 CAAATAAAGATCACCGGGTGCA 59.248 45.455 22.42 11.59 32.98 4.57
229 230 0.462047 GATCACCGGGTGCACCTAAG 60.462 60.000 33.91 23.87 36.97 2.18
243 244 2.124736 TAAGCAGACATGGCGGCC 60.125 61.111 20.79 13.32 36.08 6.13
252 253 2.526873 ATGGCGGCCTACCCCTAG 60.527 66.667 21.46 0.00 0.00 3.02
266 267 2.370189 ACCCCTAGATGTAGCATGCTTC 59.630 50.000 28.02 21.83 0.00 3.86
268 269 2.036475 CCCTAGATGTAGCATGCTTCGT 59.964 50.000 28.02 22.42 30.36 3.85
269 270 3.493350 CCCTAGATGTAGCATGCTTCGTT 60.493 47.826 28.02 12.35 30.36 3.85
270 271 4.262036 CCCTAGATGTAGCATGCTTCGTTA 60.262 45.833 28.02 14.68 30.36 3.18
271 272 5.473931 CCTAGATGTAGCATGCTTCGTTAT 58.526 41.667 28.02 16.27 30.36 1.89
272 273 6.350194 CCCTAGATGTAGCATGCTTCGTTATA 60.350 42.308 28.02 16.51 30.36 0.98
273 274 7.261325 CCTAGATGTAGCATGCTTCGTTATAT 58.739 38.462 28.02 11.06 30.36 0.86
274 275 7.761704 CCTAGATGTAGCATGCTTCGTTATATT 59.238 37.037 28.02 9.07 30.36 1.28
275 276 7.356641 AGATGTAGCATGCTTCGTTATATTG 57.643 36.000 28.02 0.00 30.36 1.90
276 277 5.342806 TGTAGCATGCTTCGTTATATTGC 57.657 39.130 28.02 1.09 0.00 3.56
277 278 3.526385 AGCATGCTTCGTTATATTGCG 57.474 42.857 16.30 0.00 0.00 4.85
278 279 2.224079 AGCATGCTTCGTTATATTGCGG 59.776 45.455 16.30 0.00 0.00 5.69
279 280 2.665519 GCATGCTTCGTTATATTGCGGG 60.666 50.000 11.37 0.00 0.00 6.13
280 281 2.319136 TGCTTCGTTATATTGCGGGT 57.681 45.000 0.00 0.00 0.00 5.28
281 282 2.206750 TGCTTCGTTATATTGCGGGTC 58.793 47.619 0.00 0.00 0.00 4.46
282 283 1.529865 GCTTCGTTATATTGCGGGTCC 59.470 52.381 0.00 0.00 0.00 4.46
283 284 2.805657 GCTTCGTTATATTGCGGGTCCT 60.806 50.000 0.00 0.00 0.00 3.85
284 285 2.519377 TCGTTATATTGCGGGTCCTG 57.481 50.000 0.00 0.00 0.00 3.86
285 286 2.033372 TCGTTATATTGCGGGTCCTGA 58.967 47.619 0.31 0.00 0.00 3.86
286 287 2.431419 TCGTTATATTGCGGGTCCTGAA 59.569 45.455 0.31 0.00 0.00 3.02
287 288 3.118702 TCGTTATATTGCGGGTCCTGAAA 60.119 43.478 0.31 0.00 0.00 2.69
288 289 3.813166 CGTTATATTGCGGGTCCTGAAAT 59.187 43.478 9.07 9.07 0.00 2.17
289 290 4.274950 CGTTATATTGCGGGTCCTGAAATT 59.725 41.667 9.38 1.06 0.00 1.82
290 291 5.560183 CGTTATATTGCGGGTCCTGAAATTC 60.560 44.000 9.38 0.00 0.00 2.17
291 292 1.094785 ATTGCGGGTCCTGAAATTCG 58.905 50.000 0.31 0.00 0.00 3.34
292 293 0.035598 TTGCGGGTCCTGAAATTCGA 59.964 50.000 0.31 0.00 0.00 3.71
293 294 0.251916 TGCGGGTCCTGAAATTCGAT 59.748 50.000 0.31 0.00 0.00 3.59
294 295 0.938008 GCGGGTCCTGAAATTCGATC 59.062 55.000 0.31 0.00 0.00 3.69
295 296 1.473434 GCGGGTCCTGAAATTCGATCT 60.473 52.381 0.31 0.00 0.00 2.75
296 297 2.474816 CGGGTCCTGAAATTCGATCTC 58.525 52.381 0.00 0.00 0.00 2.75
297 298 2.803492 CGGGTCCTGAAATTCGATCTCC 60.803 54.545 0.00 0.00 0.00 3.71
298 299 2.436173 GGGTCCTGAAATTCGATCTCCT 59.564 50.000 0.00 0.00 0.00 3.69
299 300 3.641906 GGGTCCTGAAATTCGATCTCCTA 59.358 47.826 0.00 0.00 0.00 2.94
300 301 4.101119 GGGTCCTGAAATTCGATCTCCTAA 59.899 45.833 0.00 0.00 0.00 2.69
301 302 5.396436 GGGTCCTGAAATTCGATCTCCTAAA 60.396 44.000 0.00 0.00 0.00 1.85
302 303 5.524281 GGTCCTGAAATTCGATCTCCTAAAC 59.476 44.000 0.00 0.00 0.00 2.01
303 304 6.342111 GTCCTGAAATTCGATCTCCTAAACT 58.658 40.000 0.00 0.00 0.00 2.66
304 305 6.477360 GTCCTGAAATTCGATCTCCTAAACTC 59.523 42.308 0.00 0.00 0.00 3.01
305 306 6.154534 TCCTGAAATTCGATCTCCTAAACTCA 59.845 38.462 0.00 0.00 0.00 3.41
306 307 6.989169 CCTGAAATTCGATCTCCTAAACTCAT 59.011 38.462 0.00 0.00 0.00 2.90
307 308 7.042187 CCTGAAATTCGATCTCCTAAACTCATG 60.042 40.741 0.00 0.00 0.00 3.07
308 309 7.555965 TGAAATTCGATCTCCTAAACTCATGA 58.444 34.615 0.00 0.00 0.00 3.07
309 310 8.040727 TGAAATTCGATCTCCTAAACTCATGAA 58.959 33.333 0.00 0.00 0.00 2.57
310 311 7.778470 AATTCGATCTCCTAAACTCATGAAC 57.222 36.000 0.00 0.00 0.00 3.18
311 312 5.914898 TCGATCTCCTAAACTCATGAACA 57.085 39.130 0.00 0.00 0.00 3.18
312 313 6.280855 TCGATCTCCTAAACTCATGAACAA 57.719 37.500 0.00 0.00 0.00 2.83
313 314 6.697395 TCGATCTCCTAAACTCATGAACAAA 58.303 36.000 0.00 0.00 0.00 2.83
314 315 7.158697 TCGATCTCCTAAACTCATGAACAAAA 58.841 34.615 0.00 0.00 0.00 2.44
315 316 7.824289 TCGATCTCCTAAACTCATGAACAAAAT 59.176 33.333 0.00 0.00 0.00 1.82
316 317 8.454106 CGATCTCCTAAACTCATGAACAAAATT 58.546 33.333 0.00 0.00 0.00 1.82
319 320 9.793259 TCTCCTAAACTCATGAACAAAATTACT 57.207 29.630 0.00 0.00 0.00 2.24
321 322 9.567776 TCCTAAACTCATGAACAAAATTACTCA 57.432 29.630 0.00 0.00 0.00 3.41
326 327 8.955061 ACTCATGAACAAAATTACTCAAATCG 57.045 30.769 0.00 0.00 0.00 3.34
327 328 8.023128 ACTCATGAACAAAATTACTCAAATCGG 58.977 33.333 0.00 0.00 0.00 4.18
328 329 6.806249 TCATGAACAAAATTACTCAAATCGGC 59.194 34.615 0.00 0.00 0.00 5.54
329 330 6.078202 TGAACAAAATTACTCAAATCGGCA 57.922 33.333 0.00 0.00 0.00 5.69
330 331 5.918011 TGAACAAAATTACTCAAATCGGCAC 59.082 36.000 0.00 0.00 0.00 5.01
331 332 5.705609 ACAAAATTACTCAAATCGGCACT 57.294 34.783 0.00 0.00 0.00 4.40
332 333 6.811253 ACAAAATTACTCAAATCGGCACTA 57.189 33.333 0.00 0.00 0.00 2.74
333 334 6.608610 ACAAAATTACTCAAATCGGCACTAC 58.391 36.000 0.00 0.00 0.00 2.73
334 335 6.430000 ACAAAATTACTCAAATCGGCACTACT 59.570 34.615 0.00 0.00 0.00 2.57
335 336 7.604927 ACAAAATTACTCAAATCGGCACTACTA 59.395 33.333 0.00 0.00 0.00 1.82
336 337 7.772332 AAATTACTCAAATCGGCACTACTAG 57.228 36.000 0.00 0.00 0.00 2.57
337 338 6.710597 ATTACTCAAATCGGCACTACTAGA 57.289 37.500 0.00 0.00 0.00 2.43
338 339 4.640789 ACTCAAATCGGCACTACTAGAG 57.359 45.455 0.00 0.00 0.00 2.43
339 340 4.017808 ACTCAAATCGGCACTACTAGAGT 58.982 43.478 0.00 0.00 39.82 3.24
340 341 5.191426 ACTCAAATCGGCACTACTAGAGTA 58.809 41.667 0.00 0.00 35.64 2.59
341 342 5.066246 ACTCAAATCGGCACTACTAGAGTAC 59.934 44.000 0.00 0.00 35.64 2.73
342 343 5.191426 TCAAATCGGCACTACTAGAGTACT 58.809 41.667 0.00 0.00 35.64 2.73
343 344 5.296283 TCAAATCGGCACTACTAGAGTACTC 59.704 44.000 15.41 15.41 35.64 2.59
344 345 4.693042 ATCGGCACTACTAGAGTACTCT 57.307 45.455 27.72 27.72 43.40 3.24
345 346 5.804944 ATCGGCACTACTAGAGTACTCTA 57.195 43.478 27.03 27.03 40.93 2.43
346 347 5.804944 TCGGCACTACTAGAGTACTCTAT 57.195 43.478 28.52 20.77 40.97 1.98
347 348 5.539979 TCGGCACTACTAGAGTACTCTATG 58.460 45.833 28.52 23.83 40.97 2.23
348 349 5.303845 TCGGCACTACTAGAGTACTCTATGA 59.696 44.000 28.52 19.18 40.97 2.15
349 350 6.014413 TCGGCACTACTAGAGTACTCTATGAT 60.014 42.308 28.52 19.96 40.97 2.45
350 351 6.651643 CGGCACTACTAGAGTACTCTATGATT 59.348 42.308 28.52 17.04 40.97 2.57
351 352 7.173562 CGGCACTACTAGAGTACTCTATGATTT 59.826 40.741 28.52 15.02 40.97 2.17
352 353 8.508875 GGCACTACTAGAGTACTCTATGATTTC 58.491 40.741 28.52 17.43 40.97 2.17
353 354 9.058174 GCACTACTAGAGTACTCTATGATTTCA 57.942 37.037 28.52 9.85 40.97 2.69
380 381 4.665833 AATAGCTCCGTATACAGTTGCA 57.334 40.909 3.32 0.00 0.00 4.08
381 382 2.295253 AGCTCCGTATACAGTTGCAC 57.705 50.000 3.32 0.00 0.00 4.57
382 383 1.825474 AGCTCCGTATACAGTTGCACT 59.175 47.619 3.32 0.00 0.00 4.40
383 384 2.233922 AGCTCCGTATACAGTTGCACTT 59.766 45.455 3.32 0.00 0.00 3.16
384 385 3.000727 GCTCCGTATACAGTTGCACTTT 58.999 45.455 3.32 0.00 0.00 2.66
385 386 3.181520 GCTCCGTATACAGTTGCACTTTG 60.182 47.826 3.32 0.00 0.00 2.77
386 387 4.242475 CTCCGTATACAGTTGCACTTTGA 58.758 43.478 3.32 0.00 0.00 2.69
387 388 4.827692 TCCGTATACAGTTGCACTTTGAT 58.172 39.130 3.32 0.00 0.00 2.57
388 389 5.242434 TCCGTATACAGTTGCACTTTGATT 58.758 37.500 3.32 0.00 0.00 2.57
389 390 5.703592 TCCGTATACAGTTGCACTTTGATTT 59.296 36.000 3.32 0.00 0.00 2.17
390 391 6.205853 TCCGTATACAGTTGCACTTTGATTTT 59.794 34.615 3.32 0.00 0.00 1.82
391 392 6.861055 CCGTATACAGTTGCACTTTGATTTTT 59.139 34.615 3.32 0.00 0.00 1.94
411 412 5.772393 TTTTGTATCATCTACCACCACCT 57.228 39.130 0.00 0.00 0.00 4.00
412 413 5.772393 TTTGTATCATCTACCACCACCTT 57.228 39.130 0.00 0.00 0.00 3.50
413 414 4.753516 TGTATCATCTACCACCACCTTG 57.246 45.455 0.00 0.00 0.00 3.61
414 415 4.101114 TGTATCATCTACCACCACCTTGT 58.899 43.478 0.00 0.00 0.00 3.16
415 416 4.534500 TGTATCATCTACCACCACCTTGTT 59.466 41.667 0.00 0.00 0.00 2.83
416 417 3.417069 TCATCTACCACCACCTTGTTG 57.583 47.619 0.00 0.00 0.00 3.33
417 418 2.708861 TCATCTACCACCACCTTGTTGT 59.291 45.455 0.00 0.00 0.00 3.32
418 419 2.922740 TCTACCACCACCTTGTTGTC 57.077 50.000 0.00 0.00 0.00 3.18
419 420 2.404559 TCTACCACCACCTTGTTGTCT 58.595 47.619 0.00 0.00 0.00 3.41
420 421 2.104111 TCTACCACCACCTTGTTGTCTG 59.896 50.000 0.00 0.00 0.00 3.51
421 422 0.916086 ACCACCACCTTGTTGTCTGA 59.084 50.000 0.00 0.00 0.00 3.27
422 423 1.308998 CCACCACCTTGTTGTCTGAC 58.691 55.000 0.00 0.00 0.00 3.51
423 424 0.937304 CACCACCTTGTTGTCTGACG 59.063 55.000 2.98 0.00 0.00 4.35
424 425 0.539986 ACCACCTTGTTGTCTGACGT 59.460 50.000 2.98 0.00 0.00 4.34
425 426 0.937304 CCACCTTGTTGTCTGACGTG 59.063 55.000 0.00 4.07 0.00 4.49
426 427 1.472552 CCACCTTGTTGTCTGACGTGA 60.473 52.381 11.26 0.00 0.00 4.35
427 428 1.593006 CACCTTGTTGTCTGACGTGAC 59.407 52.381 0.00 0.00 37.47 3.67
428 429 1.206132 ACCTTGTTGTCTGACGTGACA 59.794 47.619 4.71 4.71 44.17 3.58
429 430 2.158957 ACCTTGTTGTCTGACGTGACAT 60.159 45.455 9.28 0.00 45.03 3.06
430 431 2.221749 CCTTGTTGTCTGACGTGACATG 59.778 50.000 9.28 12.04 45.03 3.21
431 432 1.864565 TGTTGTCTGACGTGACATGG 58.135 50.000 9.28 0.00 45.03 3.66
432 433 1.410882 TGTTGTCTGACGTGACATGGA 59.589 47.619 9.28 0.00 45.03 3.41
433 434 1.792949 GTTGTCTGACGTGACATGGAC 59.207 52.381 9.28 2.36 45.03 4.02
434 435 0.317160 TGTCTGACGTGACATGGACC 59.683 55.000 4.71 0.00 41.43 4.46
435 436 0.389948 GTCTGACGTGACATGGACCC 60.390 60.000 0.00 0.00 36.97 4.46
436 437 0.541998 TCTGACGTGACATGGACCCT 60.542 55.000 0.00 0.00 0.00 4.34
437 438 0.321671 CTGACGTGACATGGACCCTT 59.678 55.000 0.00 0.00 0.00 3.95
438 439 0.762418 TGACGTGACATGGACCCTTT 59.238 50.000 0.00 0.00 0.00 3.11
439 440 1.156736 GACGTGACATGGACCCTTTG 58.843 55.000 0.00 0.00 0.00 2.77
440 441 0.889186 ACGTGACATGGACCCTTTGC 60.889 55.000 0.00 0.00 0.00 3.68
441 442 0.888736 CGTGACATGGACCCTTTGCA 60.889 55.000 0.00 0.00 0.00 4.08
442 443 1.327303 GTGACATGGACCCTTTGCAA 58.673 50.000 0.00 0.00 0.00 4.08
443 444 1.686052 GTGACATGGACCCTTTGCAAA 59.314 47.619 12.14 12.14 0.00 3.68
444 445 2.299867 GTGACATGGACCCTTTGCAAAT 59.700 45.455 13.23 0.00 0.00 2.32
445 446 2.971330 TGACATGGACCCTTTGCAAATT 59.029 40.909 13.23 0.00 0.00 1.82
446 447 3.006752 TGACATGGACCCTTTGCAAATTC 59.993 43.478 13.23 9.40 0.00 2.17
447 448 2.971330 ACATGGACCCTTTGCAAATTCA 59.029 40.909 13.23 3.31 0.00 2.57
448 449 3.007182 ACATGGACCCTTTGCAAATTCAG 59.993 43.478 13.23 0.00 0.00 3.02
449 450 1.969923 TGGACCCTTTGCAAATTCAGG 59.030 47.619 13.23 10.16 0.00 3.86
450 451 1.970640 GGACCCTTTGCAAATTCAGGT 59.029 47.619 13.23 16.23 0.00 4.00
451 452 2.029020 GGACCCTTTGCAAATTCAGGTC 60.029 50.000 26.78 26.78 41.27 3.85
452 453 1.970640 ACCCTTTGCAAATTCAGGTCC 59.029 47.619 13.23 0.00 0.00 4.46
453 454 2.250924 CCCTTTGCAAATTCAGGTCCT 58.749 47.619 13.23 0.00 0.00 3.85
454 455 2.232208 CCCTTTGCAAATTCAGGTCCTC 59.768 50.000 13.23 0.00 0.00 3.71
455 456 3.160269 CCTTTGCAAATTCAGGTCCTCT 58.840 45.455 13.23 0.00 0.00 3.69
456 457 3.057033 CCTTTGCAAATTCAGGTCCTCTG 60.057 47.826 13.23 0.00 44.68 3.35
463 464 3.586843 TCAGGTCCTCTGAGAGAGC 57.413 57.895 11.82 11.06 46.71 4.09
464 465 0.033601 TCAGGTCCTCTGAGAGAGCC 60.034 60.000 11.82 12.12 46.71 4.70
465 466 0.324183 CAGGTCCTCTGAGAGAGCCA 60.324 60.000 11.82 0.00 46.18 4.75
466 467 0.411452 AGGTCCTCTGAGAGAGCCAA 59.589 55.000 11.82 0.00 40.98 4.52
467 468 1.203237 AGGTCCTCTGAGAGAGCCAAA 60.203 52.381 11.82 0.00 40.98 3.28
468 469 1.206849 GGTCCTCTGAGAGAGCCAAAG 59.793 57.143 11.82 0.00 40.98 2.77
469 470 0.901124 TCCTCTGAGAGAGCCAAAGC 59.099 55.000 11.82 0.00 40.98 3.51
484 485 5.538067 GCCAAAGCTTCTCTAACTACAAG 57.462 43.478 0.00 0.00 35.50 3.16
485 486 4.998033 GCCAAAGCTTCTCTAACTACAAGT 59.002 41.667 0.00 0.00 35.50 3.16
486 487 5.106908 GCCAAAGCTTCTCTAACTACAAGTG 60.107 44.000 0.00 0.00 35.50 3.16
487 488 5.106908 CCAAAGCTTCTCTAACTACAAGTGC 60.107 44.000 0.00 0.00 0.00 4.40
488 489 5.476091 AAGCTTCTCTAACTACAAGTGCT 57.524 39.130 0.00 0.00 0.00 4.40
489 490 5.476091 AGCTTCTCTAACTACAAGTGCTT 57.524 39.130 0.00 0.00 0.00 3.91
490 491 5.474825 AGCTTCTCTAACTACAAGTGCTTC 58.525 41.667 0.00 0.00 0.00 3.86
491 492 4.324936 GCTTCTCTAACTACAAGTGCTTCG 59.675 45.833 0.00 0.00 0.00 3.79
492 493 5.700722 TTCTCTAACTACAAGTGCTTCGA 57.299 39.130 0.00 0.00 0.00 3.71
493 494 5.298197 TCTCTAACTACAAGTGCTTCGAG 57.702 43.478 0.00 0.00 0.00 4.04
494 495 4.760715 TCTCTAACTACAAGTGCTTCGAGT 59.239 41.667 0.00 0.00 0.00 4.18
495 496 4.795268 TCTAACTACAAGTGCTTCGAGTG 58.205 43.478 0.00 0.00 0.00 3.51
496 497 3.454371 AACTACAAGTGCTTCGAGTGT 57.546 42.857 0.00 0.00 0.00 3.55
497 498 3.014604 ACTACAAGTGCTTCGAGTGTC 57.985 47.619 0.00 0.00 0.00 3.67
498 499 2.288273 ACTACAAGTGCTTCGAGTGTCC 60.288 50.000 0.00 0.00 0.00 4.02
499 500 0.249911 ACAAGTGCTTCGAGTGTCCC 60.250 55.000 0.00 0.00 0.00 4.46
500 501 0.249868 CAAGTGCTTCGAGTGTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
501 502 0.034059 AAGTGCTTCGAGTGTCCCAG 59.966 55.000 0.00 0.00 0.00 4.45
502 503 1.374758 GTGCTTCGAGTGTCCCAGG 60.375 63.158 0.00 0.00 0.00 4.45
503 504 2.266055 GCTTCGAGTGTCCCAGGG 59.734 66.667 0.00 0.00 0.00 4.45
504 505 2.584391 GCTTCGAGTGTCCCAGGGT 61.584 63.158 5.01 0.00 0.00 4.34
505 506 1.592223 CTTCGAGTGTCCCAGGGTC 59.408 63.158 5.01 0.00 0.00 4.46
506 507 1.152419 TTCGAGTGTCCCAGGGTCA 60.152 57.895 5.01 2.59 0.00 4.02
507 508 0.761323 TTCGAGTGTCCCAGGGTCAA 60.761 55.000 7.05 0.00 0.00 3.18
508 509 0.544357 TCGAGTGTCCCAGGGTCAAT 60.544 55.000 7.05 6.15 0.00 2.57
509 510 0.391661 CGAGTGTCCCAGGGTCAATG 60.392 60.000 10.65 0.00 0.00 2.82
510 511 0.984230 GAGTGTCCCAGGGTCAATGA 59.016 55.000 10.65 0.00 0.00 2.57
511 512 1.561542 GAGTGTCCCAGGGTCAATGAT 59.438 52.381 10.65 0.00 0.00 2.45
512 513 1.995542 AGTGTCCCAGGGTCAATGATT 59.004 47.619 7.05 0.00 0.00 2.57
513 514 2.025887 AGTGTCCCAGGGTCAATGATTC 60.026 50.000 7.05 0.00 0.00 2.52
514 515 2.025887 GTGTCCCAGGGTCAATGATTCT 60.026 50.000 7.05 0.00 0.00 2.40
515 516 2.239654 TGTCCCAGGGTCAATGATTCTC 59.760 50.000 5.01 0.00 0.00 2.87
516 517 2.507471 GTCCCAGGGTCAATGATTCTCT 59.493 50.000 5.01 0.00 0.00 3.10
517 518 3.054065 GTCCCAGGGTCAATGATTCTCTT 60.054 47.826 5.01 0.00 0.00 2.85
518 519 3.593328 TCCCAGGGTCAATGATTCTCTTT 59.407 43.478 5.01 0.00 0.00 2.52
519 520 3.698040 CCCAGGGTCAATGATTCTCTTTG 59.302 47.826 0.00 0.00 34.12 2.77
520 521 4.338879 CCAGGGTCAATGATTCTCTTTGT 58.661 43.478 0.00 0.00 34.37 2.83
521 522 4.768968 CCAGGGTCAATGATTCTCTTTGTT 59.231 41.667 0.00 0.00 34.37 2.83
522 523 5.945784 CCAGGGTCAATGATTCTCTTTGTTA 59.054 40.000 0.00 0.00 34.37 2.41
523 524 6.127897 CCAGGGTCAATGATTCTCTTTGTTAC 60.128 42.308 0.00 0.00 34.37 2.50
524 525 5.643777 AGGGTCAATGATTCTCTTTGTTACG 59.356 40.000 0.00 0.00 34.37 3.18
525 526 5.642063 GGGTCAATGATTCTCTTTGTTACGA 59.358 40.000 0.00 0.00 34.37 3.43
526 527 6.316390 GGGTCAATGATTCTCTTTGTTACGAT 59.684 38.462 0.00 0.00 34.37 3.73
527 528 7.494625 GGGTCAATGATTCTCTTTGTTACGATA 59.505 37.037 0.00 0.00 34.37 2.92
528 529 8.328864 GGTCAATGATTCTCTTTGTTACGATAC 58.671 37.037 0.00 0.00 34.37 2.24
529 530 9.088512 GTCAATGATTCTCTTTGTTACGATACT 57.911 33.333 0.00 0.00 34.37 2.12
530 531 9.302345 TCAATGATTCTCTTTGTTACGATACTC 57.698 33.333 0.00 0.00 34.37 2.59
531 532 7.916128 ATGATTCTCTTTGTTACGATACTCG 57.084 36.000 0.00 0.00 46.93 4.18
532 533 7.080353 TGATTCTCTTTGTTACGATACTCGA 57.920 36.000 3.20 0.00 43.74 4.04
533 534 7.532571 TGATTCTCTTTGTTACGATACTCGAA 58.467 34.615 3.20 0.00 43.74 3.71
534 535 7.696872 TGATTCTCTTTGTTACGATACTCGAAG 59.303 37.037 3.20 0.00 43.74 3.79
535 536 5.330295 TCTCTTTGTTACGATACTCGAAGC 58.670 41.667 3.20 0.00 43.74 3.86
536 537 5.123502 TCTCTTTGTTACGATACTCGAAGCT 59.876 40.000 3.20 0.00 43.74 3.74
537 538 5.330295 TCTTTGTTACGATACTCGAAGCTC 58.670 41.667 3.20 0.00 43.74 4.09
538 539 3.687572 TGTTACGATACTCGAAGCTCC 57.312 47.619 3.20 0.00 43.74 4.70
539 540 3.011818 TGTTACGATACTCGAAGCTCCA 58.988 45.455 3.20 0.00 43.74 3.86
540 541 3.441222 TGTTACGATACTCGAAGCTCCAA 59.559 43.478 3.20 0.00 43.74 3.53
541 542 4.082625 TGTTACGATACTCGAAGCTCCAAA 60.083 41.667 3.20 0.00 43.74 3.28
542 543 3.587797 ACGATACTCGAAGCTCCAAAA 57.412 42.857 3.20 0.00 43.74 2.44
543 544 3.921677 ACGATACTCGAAGCTCCAAAAA 58.078 40.909 3.20 0.00 43.74 1.94
561 562 3.896648 AAAAAGACGCATCGTTGTGAT 57.103 38.095 13.69 0.00 41.37 3.06
562 563 3.455619 AAAAGACGCATCGTTGTGATC 57.544 42.857 13.69 7.54 41.37 2.92
563 564 2.370281 AAGACGCATCGTTGTGATCT 57.630 45.000 13.69 9.41 41.37 2.75
564 565 1.914634 AGACGCATCGTTGTGATCTC 58.085 50.000 13.69 1.61 41.37 2.75
565 566 1.474478 AGACGCATCGTTGTGATCTCT 59.526 47.619 13.69 3.81 41.37 3.10
566 567 2.683362 AGACGCATCGTTGTGATCTCTA 59.317 45.455 13.69 0.00 41.37 2.43
567 568 2.784380 GACGCATCGTTGTGATCTCTAC 59.216 50.000 13.69 0.00 41.37 2.59
568 569 1.775770 CGCATCGTTGTGATCTCTACG 59.224 52.381 20.58 20.58 34.13 3.51
569 570 2.538939 CGCATCGTTGTGATCTCTACGA 60.539 50.000 27.45 27.45 45.39 3.43
570 571 2.784380 GCATCGTTGTGATCTCTACGAC 59.216 50.000 27.70 16.97 44.56 4.34
571 572 3.487711 GCATCGTTGTGATCTCTACGACT 60.488 47.826 27.70 17.66 44.56 4.18
572 573 3.741805 TCGTTGTGATCTCTACGACTG 57.258 47.619 23.70 8.25 39.58 3.51
573 574 3.332034 TCGTTGTGATCTCTACGACTGA 58.668 45.455 23.70 8.11 39.58 3.41
574 575 3.371285 TCGTTGTGATCTCTACGACTGAG 59.629 47.826 23.70 2.95 39.58 3.35
575 576 3.486043 CGTTGTGATCTCTACGACTGAGG 60.486 52.174 21.60 0.00 38.39 3.86
576 577 2.017782 TGTGATCTCTACGACTGAGGC 58.982 52.381 0.00 0.00 32.78 4.70
577 578 2.017782 GTGATCTCTACGACTGAGGCA 58.982 52.381 0.00 0.00 32.78 4.75
578 579 2.032799 GTGATCTCTACGACTGAGGCAG 59.967 54.545 0.00 0.00 37.52 4.85
579 580 1.001815 GATCTCTACGACTGAGGCAGC 60.002 57.143 0.00 0.00 34.37 5.25
580 581 0.322546 TCTCTACGACTGAGGCAGCA 60.323 55.000 0.00 0.00 34.37 4.41
581 582 0.100325 CTCTACGACTGAGGCAGCAG 59.900 60.000 5.93 5.93 41.63 4.24
582 583 0.322546 TCTACGACTGAGGCAGCAGA 60.323 55.000 13.32 0.00 39.20 4.26
583 584 0.743688 CTACGACTGAGGCAGCAGAT 59.256 55.000 13.32 2.74 39.20 2.90
584 585 0.457443 TACGACTGAGGCAGCAGATG 59.543 55.000 13.32 7.83 39.20 2.90
597 598 2.925578 GCAGATGCAATGCTAACACA 57.074 45.000 17.45 0.00 40.59 3.72
598 599 2.523015 GCAGATGCAATGCTAACACAC 58.477 47.619 17.45 0.00 40.59 3.82
599 600 2.733227 GCAGATGCAATGCTAACACACC 60.733 50.000 17.45 0.00 40.59 4.16
600 601 2.751259 CAGATGCAATGCTAACACACCT 59.249 45.455 6.82 0.00 0.00 4.00
601 602 3.012518 AGATGCAATGCTAACACACCTC 58.987 45.455 6.82 0.00 0.00 3.85
602 603 2.268762 TGCAATGCTAACACACCTCA 57.731 45.000 6.82 0.00 0.00 3.86
603 604 2.794103 TGCAATGCTAACACACCTCAT 58.206 42.857 6.82 0.00 0.00 2.90
604 605 2.488937 TGCAATGCTAACACACCTCATG 59.511 45.455 6.82 0.00 0.00 3.07
605 606 2.749076 GCAATGCTAACACACCTCATGA 59.251 45.455 0.00 0.00 0.00 3.07
606 607 3.426695 GCAATGCTAACACACCTCATGAC 60.427 47.826 0.00 0.00 0.00 3.06
607 608 2.078849 TGCTAACACACCTCATGACG 57.921 50.000 0.00 0.00 0.00 4.35
608 609 1.337728 TGCTAACACACCTCATGACGG 60.338 52.381 9.01 9.01 0.00 4.79
609 610 1.359848 CTAACACACCTCATGACGGC 58.640 55.000 10.15 0.00 0.00 5.68
610 611 0.682292 TAACACACCTCATGACGGCA 59.318 50.000 0.00 0.00 0.00 5.69
611 612 0.179032 AACACACCTCATGACGGCAA 60.179 50.000 0.00 0.00 0.00 4.52
612 613 0.884704 ACACACCTCATGACGGCAAC 60.885 55.000 0.00 0.00 0.00 4.17
613 614 0.884259 CACACCTCATGACGGCAACA 60.884 55.000 0.00 0.00 0.00 3.33
614 615 0.036732 ACACCTCATGACGGCAACAT 59.963 50.000 0.00 0.00 0.00 2.71
615 616 0.729116 CACCTCATGACGGCAACATC 59.271 55.000 0.00 0.00 0.00 3.06
616 617 0.740868 ACCTCATGACGGCAACATCG 60.741 55.000 0.00 0.00 0.00 3.84
617 618 0.460109 CCTCATGACGGCAACATCGA 60.460 55.000 0.00 0.00 0.00 3.59
618 619 0.647410 CTCATGACGGCAACATCGAC 59.353 55.000 0.00 0.00 0.00 4.20
619 620 0.037790 TCATGACGGCAACATCGACA 60.038 50.000 0.00 0.00 36.84 4.35
620 621 1.009078 CATGACGGCAACATCGACAT 58.991 50.000 0.00 0.00 41.78 3.06
621 622 1.398041 CATGACGGCAACATCGACATT 59.602 47.619 0.00 0.00 39.90 2.71
622 623 1.075542 TGACGGCAACATCGACATTC 58.924 50.000 0.00 0.00 0.00 2.67
623 624 1.075542 GACGGCAACATCGACATTCA 58.924 50.000 0.00 0.00 0.00 2.57
624 625 0.796312 ACGGCAACATCGACATTCAC 59.204 50.000 0.00 0.00 0.00 3.18
625 626 0.096976 CGGCAACATCGACATTCACC 59.903 55.000 0.00 0.00 0.00 4.02
626 627 1.453155 GGCAACATCGACATTCACCT 58.547 50.000 0.00 0.00 0.00 4.00
627 628 1.812571 GGCAACATCGACATTCACCTT 59.187 47.619 0.00 0.00 0.00 3.50
628 629 2.414559 GGCAACATCGACATTCACCTTG 60.415 50.000 0.00 0.00 0.00 3.61
629 630 2.414559 GCAACATCGACATTCACCTTGG 60.415 50.000 0.00 0.00 0.00 3.61
630 631 1.453155 ACATCGACATTCACCTTGGC 58.547 50.000 0.00 0.00 0.00 4.52
631 632 1.003580 ACATCGACATTCACCTTGGCT 59.996 47.619 0.00 0.00 0.00 4.75
632 633 2.236146 ACATCGACATTCACCTTGGCTA 59.764 45.455 0.00 0.00 0.00 3.93
633 634 3.270027 CATCGACATTCACCTTGGCTAA 58.730 45.455 0.00 0.00 0.00 3.09
634 635 3.410631 TCGACATTCACCTTGGCTAAA 57.589 42.857 0.00 0.00 0.00 1.85
635 636 3.071479 TCGACATTCACCTTGGCTAAAC 58.929 45.455 0.00 0.00 0.00 2.01
636 637 3.074412 CGACATTCACCTTGGCTAAACT 58.926 45.455 0.00 0.00 0.00 2.66
637 638 3.125316 CGACATTCACCTTGGCTAAACTC 59.875 47.826 0.00 0.00 0.00 3.01
638 639 4.327680 GACATTCACCTTGGCTAAACTCT 58.672 43.478 0.00 0.00 0.00 3.24
639 640 4.327680 ACATTCACCTTGGCTAAACTCTC 58.672 43.478 0.00 0.00 0.00 3.20
640 641 4.042187 ACATTCACCTTGGCTAAACTCTCT 59.958 41.667 0.00 0.00 0.00 3.10
641 642 3.963428 TCACCTTGGCTAAACTCTCTC 57.037 47.619 0.00 0.00 0.00 3.20
642 643 3.239449 TCACCTTGGCTAAACTCTCTCA 58.761 45.455 0.00 0.00 0.00 3.27
643 644 3.259374 TCACCTTGGCTAAACTCTCTCAG 59.741 47.826 0.00 0.00 0.00 3.35
644 645 2.569404 ACCTTGGCTAAACTCTCTCAGG 59.431 50.000 0.00 0.00 0.00 3.86
645 646 2.569404 CCTTGGCTAAACTCTCTCAGGT 59.431 50.000 0.00 0.00 0.00 4.00
646 647 3.594134 CTTGGCTAAACTCTCTCAGGTG 58.406 50.000 0.00 0.00 0.00 4.00
647 648 1.902508 TGGCTAAACTCTCTCAGGTGG 59.097 52.381 0.00 0.00 0.00 4.61
648 649 2.180276 GGCTAAACTCTCTCAGGTGGA 58.820 52.381 0.00 0.00 0.00 4.02
649 650 2.167487 GGCTAAACTCTCTCAGGTGGAG 59.833 54.545 0.00 0.00 45.49 3.86
650 651 2.167487 GCTAAACTCTCTCAGGTGGAGG 59.833 54.545 0.00 0.00 44.19 4.30
651 652 1.650528 AAACTCTCTCAGGTGGAGGG 58.349 55.000 0.00 0.00 46.21 4.30
656 657 2.105213 TCTCAGGTGGAGGGATCCA 58.895 57.895 15.23 0.00 44.19 3.41
663 664 3.815717 TGGAGGGATCCACTGAGTT 57.184 52.632 15.23 0.00 34.33 3.01
664 665 1.279496 TGGAGGGATCCACTGAGTTG 58.721 55.000 15.23 0.00 34.33 3.16
665 666 0.543749 GGAGGGATCCACTGAGTTGG 59.456 60.000 15.23 0.00 38.10 3.77
666 667 1.280457 GAGGGATCCACTGAGTTGGT 58.720 55.000 15.23 0.00 37.93 3.67
667 668 1.208293 GAGGGATCCACTGAGTTGGTC 59.792 57.143 15.23 0.00 37.93 4.02
668 669 0.108138 GGGATCCACTGAGTTGGTCG 60.108 60.000 15.23 0.00 37.93 4.79
669 670 0.895530 GGATCCACTGAGTTGGTCGA 59.104 55.000 6.95 0.00 37.93 4.20
670 671 1.275291 GGATCCACTGAGTTGGTCGAA 59.725 52.381 6.95 0.00 37.93 3.71
671 672 2.338500 GATCCACTGAGTTGGTCGAAC 58.662 52.381 0.00 0.00 37.93 3.95
673 674 1.068588 TCCACTGAGTTGGTCGAACTG 59.931 52.381 4.82 0.00 45.48 3.16
674 675 1.502231 CACTGAGTTGGTCGAACTGG 58.498 55.000 4.82 1.11 45.48 4.00
675 676 1.120530 ACTGAGTTGGTCGAACTGGT 58.879 50.000 4.82 1.69 45.48 4.00
676 677 1.485066 ACTGAGTTGGTCGAACTGGTT 59.515 47.619 4.82 0.00 45.48 3.67
677 678 1.867233 CTGAGTTGGTCGAACTGGTTG 59.133 52.381 4.82 0.00 45.48 3.77
678 679 0.586802 GAGTTGGTCGAACTGGTTGC 59.413 55.000 4.82 0.00 45.48 4.17
679 680 0.107410 AGTTGGTCGAACTGGTTGCA 60.107 50.000 0.33 0.00 43.71 4.08
680 681 0.028902 GTTGGTCGAACTGGTTGCAC 59.971 55.000 0.33 0.00 0.00 4.57
681 682 1.098712 TTGGTCGAACTGGTTGCACC 61.099 55.000 0.33 0.00 39.22 5.01
682 683 2.604174 GGTCGAACTGGTTGCACCG 61.604 63.158 0.00 0.00 42.58 4.94
683 684 1.885850 GTCGAACTGGTTGCACCGT 60.886 57.895 0.00 0.00 42.58 4.83
684 685 1.153329 TCGAACTGGTTGCACCGTT 60.153 52.632 11.85 11.85 42.58 4.44
685 686 1.155424 TCGAACTGGTTGCACCGTTC 61.155 55.000 19.86 19.86 42.58 3.95
686 687 1.433053 CGAACTGGTTGCACCGTTCA 61.433 55.000 24.10 7.90 44.35 3.18
687 688 0.736053 GAACTGGTTGCACCGTTCAA 59.264 50.000 22.17 0.00 43.97 2.69
688 689 1.133407 GAACTGGTTGCACCGTTCAAA 59.867 47.619 22.17 0.00 43.97 2.69
689 690 0.738389 ACTGGTTGCACCGTTCAAAG 59.262 50.000 0.00 0.00 42.58 2.77
690 691 0.738389 CTGGTTGCACCGTTCAAAGT 59.262 50.000 0.00 0.00 42.58 2.66
691 692 1.944024 CTGGTTGCACCGTTCAAAGTA 59.056 47.619 0.00 0.00 42.58 2.24
692 693 2.356382 CTGGTTGCACCGTTCAAAGTAA 59.644 45.455 0.00 0.00 42.58 2.24
693 694 2.952978 TGGTTGCACCGTTCAAAGTAAT 59.047 40.909 0.00 0.00 42.58 1.89
694 695 3.243234 TGGTTGCACCGTTCAAAGTAATG 60.243 43.478 0.00 0.00 42.58 1.90
695 696 3.305110 GTTGCACCGTTCAAAGTAATGG 58.695 45.455 0.00 0.00 40.72 3.16
696 697 2.852449 TGCACCGTTCAAAGTAATGGA 58.148 42.857 1.96 0.00 38.64 3.41
697 698 2.550606 TGCACCGTTCAAAGTAATGGAC 59.449 45.455 1.96 0.00 38.64 4.02
698 699 2.550606 GCACCGTTCAAAGTAATGGACA 59.449 45.455 1.96 0.00 38.64 4.02
699 700 3.003897 GCACCGTTCAAAGTAATGGACAA 59.996 43.478 1.96 0.00 38.64 3.18
700 701 4.498345 GCACCGTTCAAAGTAATGGACAAA 60.498 41.667 1.96 0.00 38.64 2.83
701 702 4.973663 CACCGTTCAAAGTAATGGACAAAC 59.026 41.667 1.96 0.00 38.64 2.93
702 703 4.641094 ACCGTTCAAAGTAATGGACAAACA 59.359 37.500 1.96 0.00 38.64 2.83
703 704 4.973663 CCGTTCAAAGTAATGGACAAACAC 59.026 41.667 0.00 0.00 37.68 3.32
704 705 5.449314 CCGTTCAAAGTAATGGACAAACACA 60.449 40.000 0.00 0.00 37.68 3.72
705 706 6.205784 CGTTCAAAGTAATGGACAAACACAT 58.794 36.000 0.00 0.00 0.00 3.21
706 707 7.356540 CGTTCAAAGTAATGGACAAACACATA 58.643 34.615 0.00 0.00 0.00 2.29
707 708 7.533900 CGTTCAAAGTAATGGACAAACACATAG 59.466 37.037 0.00 0.00 0.00 2.23
708 709 8.564574 GTTCAAAGTAATGGACAAACACATAGA 58.435 33.333 0.00 0.00 0.00 1.98
709 710 8.322906 TCAAAGTAATGGACAAACACATAGAG 57.677 34.615 0.00 0.00 0.00 2.43
710 711 6.743575 AAGTAATGGACAAACACATAGAGC 57.256 37.500 0.00 0.00 0.00 4.09
711 712 5.804639 AGTAATGGACAAACACATAGAGCA 58.195 37.500 0.00 0.00 0.00 4.26
712 713 6.418101 AGTAATGGACAAACACATAGAGCAT 58.582 36.000 0.00 0.00 0.00 3.79
713 714 5.824904 AATGGACAAACACATAGAGCATC 57.175 39.130 0.00 0.00 0.00 3.91
714 715 3.609853 TGGACAAACACATAGAGCATCC 58.390 45.455 0.00 0.00 33.66 3.51
715 716 2.945668 GGACAAACACATAGAGCATCCC 59.054 50.000 0.00 0.00 33.66 3.85
716 717 2.945668 GACAAACACATAGAGCATCCCC 59.054 50.000 0.00 0.00 33.66 4.81
717 718 2.301346 CAAACACATAGAGCATCCCCC 58.699 52.381 0.00 0.00 33.66 5.40
718 719 0.469917 AACACATAGAGCATCCCCCG 59.530 55.000 0.00 0.00 33.66 5.73
719 720 0.398522 ACACATAGAGCATCCCCCGA 60.399 55.000 0.00 0.00 33.66 5.14
720 721 0.034059 CACATAGAGCATCCCCCGAC 59.966 60.000 0.00 0.00 33.66 4.79
721 722 0.105453 ACATAGAGCATCCCCCGACT 60.105 55.000 0.00 0.00 33.66 4.18
722 723 0.319728 CATAGAGCATCCCCCGACTG 59.680 60.000 0.00 0.00 33.66 3.51
723 724 0.833834 ATAGAGCATCCCCCGACTGG 60.834 60.000 0.00 0.00 33.66 4.00
742 743 4.468769 TCGGCCCCGGGTACTGAT 62.469 66.667 21.85 0.00 40.25 2.90
743 744 3.925090 CGGCCCCGGGTACTGATC 61.925 72.222 21.85 0.00 36.31 2.92
744 745 3.925090 GGCCCCGGGTACTGATCG 61.925 72.222 21.85 1.58 36.31 3.69
745 746 2.836360 GCCCCGGGTACTGATCGA 60.836 66.667 21.85 0.00 36.31 3.59
746 747 2.207924 GCCCCGGGTACTGATCGAT 61.208 63.158 21.85 0.00 36.31 3.59
747 748 1.965219 CCCCGGGTACTGATCGATC 59.035 63.158 21.85 18.72 36.31 3.69
748 749 0.826256 CCCCGGGTACTGATCGATCA 60.826 60.000 25.80 25.80 36.31 2.92
775 776 1.796190 CGATCGAGCGATTCCCCTCA 61.796 60.000 20.02 0.00 34.60 3.86
805 808 2.776913 CCTTCCTCTCGGCGACTCC 61.777 68.421 4.99 0.00 0.00 3.85
806 809 1.751162 CTTCCTCTCGGCGACTCCT 60.751 63.158 4.99 0.00 0.00 3.69
811 814 3.522731 CTCGGCGACTCCTGGAGG 61.523 72.222 26.56 11.69 33.35 4.30
852 857 3.702048 CTCGCCGTTCTTCCCCCA 61.702 66.667 0.00 0.00 0.00 4.96
931 937 1.639108 ACTAGCTAGGGTTTTTGGGGG 59.361 52.381 24.35 0.00 0.00 5.40
992 1006 2.618241 GTTTCGTCGGGTTAGGGTTTTT 59.382 45.455 0.00 0.00 0.00 1.94
1038 1052 2.435059 GCAGGCTCGGGAACAGAC 60.435 66.667 0.00 0.00 0.00 3.51
1041 1055 2.126031 GGCTCGGGAACAGACGAC 60.126 66.667 0.00 0.00 35.04 4.34
1047 1061 0.595567 CGGGAACAGACGACGTTGAA 60.596 55.000 10.51 0.00 0.00 2.69
1071 1085 2.205022 TGATGAAGAACCTGGGCTTG 57.795 50.000 8.53 0.00 0.00 4.01
1104 1118 4.023980 ACCTAGATGATGTGGTCTTCGAA 58.976 43.478 0.00 0.00 36.42 3.71
1120 1134 3.981071 TCGAAGATCAACAGGTTCCAT 57.019 42.857 0.00 0.00 0.00 3.41
1125 1139 4.916041 AGATCAACAGGTTCCATCAGAA 57.084 40.909 0.00 0.00 0.00 3.02
1131 1145 2.115291 GGTTCCATCAGAAGCGGCC 61.115 63.158 0.00 0.00 42.69 6.13
1155 1169 3.635191 TGGATGGCTGTGGCACGA 61.635 61.111 13.77 1.31 41.84 4.35
1167 1181 0.036765 TGGCACGAGTTCATACACCC 60.037 55.000 0.00 0.00 0.00 4.61
1186 1200 5.067273 CACCCAAAGAATACAACCAGTACA 58.933 41.667 0.00 0.00 35.05 2.90
1212 1226 0.322816 TTCTCAACATGAGGGCTGCC 60.323 55.000 11.05 11.05 44.39 4.85
1245 1259 1.749063 CAGGAAGTAAAAATCCGCCCC 59.251 52.381 0.00 0.00 40.78 5.80
1272 1286 3.118775 AGAGCAACCTATACACGATGCAA 60.119 43.478 0.00 0.00 36.30 4.08
1287 1301 1.686355 TGCAATTCTCGTGTTTGGGT 58.314 45.000 0.00 0.00 0.00 4.51
1350 1364 3.133464 AATGCGGTGGTGATGGCG 61.133 61.111 0.00 0.00 0.00 5.69
1461 1518 2.037847 ATGGTGAAAGCCCTGGCC 59.962 61.111 4.13 0.00 43.17 5.36
1523 1580 5.120674 CCCAAGATTTTGAAGGAAATTTCGC 59.879 40.000 11.95 5.47 36.36 4.70
1542 1599 1.078759 CGCGTGTCAGGGTGAAGATC 61.079 60.000 0.00 0.00 0.00 2.75
1573 1630 0.464036 ACCACTCAAGAACGCAGTCA 59.536 50.000 0.00 0.00 45.00 3.41
1611 1668 4.119862 GCAAAAGGAAGGTTTTCTTGGTC 58.880 43.478 0.00 0.00 35.50 4.02
1677 1734 2.094026 GGGCCATCAATTCAAGGAACAC 60.094 50.000 4.39 0.00 0.00 3.32
1701 1758 3.578456 GGTGTTCATCCACCGCAG 58.422 61.111 0.00 0.00 45.03 5.18
1753 1810 9.490379 CCGGATAATTAAGCTACAGTAATTCTT 57.510 33.333 0.00 0.00 33.20 2.52
1951 2067 3.621682 TTTGACCCACCAATTAACCCT 57.378 42.857 0.00 0.00 0.00 4.34
2002 2118 9.505995 GGCAAATAAAATAGCCATTTCAAAATG 57.494 29.630 8.23 8.23 46.26 2.32
2068 2184 6.923012 TGTCATCCCAAAATATTGTGAAGTG 58.077 36.000 7.23 3.11 34.60 3.16
2374 2491 1.038130 CCCTCTCTCATCCGGTTCGT 61.038 60.000 0.00 0.00 0.00 3.85
2437 2554 3.726517 CAAAGGCTCGTGCGGTGG 61.727 66.667 3.02 0.00 40.82 4.61
2461 2578 1.299850 CTCGTCGTCACTGTTGCCA 60.300 57.895 0.00 0.00 0.00 4.92
2592 2709 0.095935 CCGTCGTCTTCGTCACGTAT 59.904 55.000 0.00 0.00 38.45 3.06
2647 2764 4.475444 CTACCCCCGGCCTCCTCA 62.475 72.222 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.278013 GAACGCTACCGCTCCTCG 60.278 66.667 0.00 0.00 38.22 4.63
6 7 2.278013 CGAACGCTACCGCTCCTC 60.278 66.667 0.00 0.00 38.22 3.71
49 50 4.070552 ACTCCGCTCCGCAACTCC 62.071 66.667 0.00 0.00 0.00 3.85
50 51 2.811317 CACTCCGCTCCGCAACTC 60.811 66.667 0.00 0.00 0.00 3.01
53 54 4.393155 ATGCACTCCGCTCCGCAA 62.393 61.111 0.00 0.00 43.06 4.85
54 55 4.819761 GATGCACTCCGCTCCGCA 62.820 66.667 0.00 0.00 43.06 5.69
62 63 2.109126 GCCTGTTCGGATGCACTCC 61.109 63.158 0.00 0.00 41.07 3.85
63 64 2.109126 GGCCTGTTCGGATGCACTC 61.109 63.158 0.00 0.00 33.16 3.51
64 65 2.045926 GGCCTGTTCGGATGCACT 60.046 61.111 0.00 0.00 33.16 4.40
65 66 3.134127 GGGCCTGTTCGGATGCAC 61.134 66.667 0.84 0.00 33.16 4.57
66 67 1.558167 TAAGGGCCTGTTCGGATGCA 61.558 55.000 6.92 0.00 33.16 3.96
67 68 0.393808 TTAAGGGCCTGTTCGGATGC 60.394 55.000 6.92 0.00 33.16 3.91
68 69 2.348411 ATTAAGGGCCTGTTCGGATG 57.652 50.000 6.92 0.00 33.16 3.51
69 70 3.743269 CGTAATTAAGGGCCTGTTCGGAT 60.743 47.826 6.92 0.00 33.16 4.18
70 71 2.419021 CGTAATTAAGGGCCTGTTCGGA 60.419 50.000 6.92 0.00 33.16 4.55
71 72 1.937899 CGTAATTAAGGGCCTGTTCGG 59.062 52.381 6.92 0.00 0.00 4.30
72 73 2.606272 GACGTAATTAAGGGCCTGTTCG 59.394 50.000 6.92 9.39 0.00 3.95
73 74 3.870274 AGACGTAATTAAGGGCCTGTTC 58.130 45.455 6.92 0.00 0.00 3.18
74 75 3.994931 AGACGTAATTAAGGGCCTGTT 57.005 42.857 6.92 5.50 0.00 3.16
75 76 3.994931 AAGACGTAATTAAGGGCCTGT 57.005 42.857 6.92 0.00 0.00 4.00
76 77 3.800506 CGTAAGACGTAATTAAGGGCCTG 59.199 47.826 6.92 0.00 43.02 4.85
77 78 3.701040 TCGTAAGACGTAATTAAGGGCCT 59.299 43.478 0.00 0.00 45.01 5.19
78 79 4.045636 TCGTAAGACGTAATTAAGGGCC 57.954 45.455 0.00 0.00 45.01 5.80
155 156 9.428097 GTTCAATAAAGCTTCATGGAATTTTCT 57.572 29.630 2.60 0.00 0.00 2.52
156 157 9.428097 AGTTCAATAAAGCTTCATGGAATTTTC 57.572 29.630 2.60 0.00 0.00 2.29
157 158 9.211485 CAGTTCAATAAAGCTTCATGGAATTTT 57.789 29.630 2.60 0.00 0.00 1.82
161 162 6.489700 TGACAGTTCAATAAAGCTTCATGGAA 59.510 34.615 0.00 0.00 0.00 3.53
162 163 6.003326 TGACAGTTCAATAAAGCTTCATGGA 58.997 36.000 0.00 0.00 0.00 3.41
163 164 6.258230 TGACAGTTCAATAAAGCTTCATGG 57.742 37.500 0.00 0.00 0.00 3.66
167 168 9.846248 AACATTATGACAGTTCAATAAAGCTTC 57.154 29.630 0.00 0.00 34.61 3.86
175 176 9.844790 CATGTGTAAACATTATGACAGTTCAAT 57.155 29.630 0.00 0.00 34.61 2.57
176 177 7.807433 GCATGTGTAAACATTATGACAGTTCAA 59.193 33.333 0.00 0.00 34.61 2.69
177 178 7.040823 TGCATGTGTAAACATTATGACAGTTCA 60.041 33.333 0.00 0.00 35.73 3.18
178 179 7.304735 TGCATGTGTAAACATTATGACAGTTC 58.695 34.615 0.00 0.00 0.00 3.01
179 180 7.213216 TGCATGTGTAAACATTATGACAGTT 57.787 32.000 0.00 0.00 0.00 3.16
180 181 6.816134 TGCATGTGTAAACATTATGACAGT 57.184 33.333 0.00 0.00 0.00 3.55
181 182 8.692110 ATTTGCATGTGTAAACATTATGACAG 57.308 30.769 0.00 0.00 32.72 3.51
199 200 3.381272 CACCCGGTGATCTTTATTTGCAT 59.619 43.478 12.68 0.00 35.23 3.96
200 201 2.752354 CACCCGGTGATCTTTATTTGCA 59.248 45.455 12.68 0.00 35.23 4.08
203 204 2.752903 GTGCACCCGGTGATCTTTATTT 59.247 45.455 22.37 0.00 35.23 1.40
221 222 1.709147 CGCCATGTCTGCTTAGGTGC 61.709 60.000 0.00 0.00 0.00 5.01
223 224 1.221840 CCGCCATGTCTGCTTAGGT 59.778 57.895 0.00 0.00 0.00 3.08
229 230 2.897350 GTAGGCCGCCATGTCTGC 60.897 66.667 13.15 0.00 0.00 4.26
243 244 3.169099 AGCATGCTACATCTAGGGGTAG 58.831 50.000 21.21 13.99 39.92 3.18
252 253 6.017933 GCAATATAACGAAGCATGCTACATC 58.982 40.000 23.00 14.28 0.00 3.06
266 267 2.519377 TCAGGACCCGCAATATAACG 57.481 50.000 0.00 0.00 0.00 3.18
268 269 4.513692 CGAATTTCAGGACCCGCAATATAA 59.486 41.667 0.00 0.00 0.00 0.98
269 270 4.062293 CGAATTTCAGGACCCGCAATATA 58.938 43.478 0.00 0.00 0.00 0.86
270 271 2.878406 CGAATTTCAGGACCCGCAATAT 59.122 45.455 0.00 0.00 0.00 1.28
271 272 2.093394 TCGAATTTCAGGACCCGCAATA 60.093 45.455 0.00 0.00 0.00 1.90
272 273 1.094785 CGAATTTCAGGACCCGCAAT 58.905 50.000 0.00 0.00 0.00 3.56
273 274 0.035598 TCGAATTTCAGGACCCGCAA 59.964 50.000 0.00 0.00 0.00 4.85
274 275 0.251916 ATCGAATTTCAGGACCCGCA 59.748 50.000 0.00 0.00 0.00 5.69
275 276 0.938008 GATCGAATTTCAGGACCCGC 59.062 55.000 0.00 0.00 0.00 6.13
276 277 2.474816 GAGATCGAATTTCAGGACCCG 58.525 52.381 0.00 0.00 0.00 5.28
277 278 2.436173 AGGAGATCGAATTTCAGGACCC 59.564 50.000 0.00 0.00 0.00 4.46
278 279 3.828875 AGGAGATCGAATTTCAGGACC 57.171 47.619 0.00 0.00 0.00 4.46
279 280 6.342111 AGTTTAGGAGATCGAATTTCAGGAC 58.658 40.000 0.00 0.00 0.00 3.85
280 281 6.154534 TGAGTTTAGGAGATCGAATTTCAGGA 59.845 38.462 0.00 0.00 0.00 3.86
281 282 6.341316 TGAGTTTAGGAGATCGAATTTCAGG 58.659 40.000 0.00 0.00 0.00 3.86
282 283 7.708322 TCATGAGTTTAGGAGATCGAATTTCAG 59.292 37.037 0.00 0.00 0.00 3.02
283 284 7.555965 TCATGAGTTTAGGAGATCGAATTTCA 58.444 34.615 0.00 0.00 0.00 2.69
284 285 8.331742 GTTCATGAGTTTAGGAGATCGAATTTC 58.668 37.037 0.00 0.00 0.00 2.17
285 286 7.824289 TGTTCATGAGTTTAGGAGATCGAATTT 59.176 33.333 0.00 0.00 0.00 1.82
286 287 7.331026 TGTTCATGAGTTTAGGAGATCGAATT 58.669 34.615 0.00 0.00 0.00 2.17
287 288 6.878317 TGTTCATGAGTTTAGGAGATCGAAT 58.122 36.000 0.00 0.00 0.00 3.34
288 289 6.280855 TGTTCATGAGTTTAGGAGATCGAA 57.719 37.500 0.00 0.00 0.00 3.71
289 290 5.914898 TGTTCATGAGTTTAGGAGATCGA 57.085 39.130 0.00 0.00 0.00 3.59
290 291 6.968131 TTTGTTCATGAGTTTAGGAGATCG 57.032 37.500 0.00 0.00 0.00 3.69
293 294 9.793259 AGTAATTTTGTTCATGAGTTTAGGAGA 57.207 29.630 0.00 0.00 0.00 3.71
295 296 9.567776 TGAGTAATTTTGTTCATGAGTTTAGGA 57.432 29.630 0.00 0.00 0.00 2.94
300 301 9.398170 CGATTTGAGTAATTTTGTTCATGAGTT 57.602 29.630 0.00 0.00 0.00 3.01
301 302 8.023128 CCGATTTGAGTAATTTTGTTCATGAGT 58.977 33.333 0.00 0.00 0.00 3.41
302 303 7.008628 GCCGATTTGAGTAATTTTGTTCATGAG 59.991 37.037 0.00 0.00 0.00 2.90
303 304 6.806249 GCCGATTTGAGTAATTTTGTTCATGA 59.194 34.615 0.00 0.00 0.00 3.07
304 305 6.585702 TGCCGATTTGAGTAATTTTGTTCATG 59.414 34.615 0.00 0.00 0.00 3.07
305 306 6.586082 GTGCCGATTTGAGTAATTTTGTTCAT 59.414 34.615 0.00 0.00 0.00 2.57
306 307 5.918011 GTGCCGATTTGAGTAATTTTGTTCA 59.082 36.000 0.00 0.00 0.00 3.18
307 308 6.149633 AGTGCCGATTTGAGTAATTTTGTTC 58.850 36.000 0.00 0.00 0.00 3.18
308 309 6.084326 AGTGCCGATTTGAGTAATTTTGTT 57.916 33.333 0.00 0.00 0.00 2.83
309 310 5.705609 AGTGCCGATTTGAGTAATTTTGT 57.294 34.783 0.00 0.00 0.00 2.83
310 311 6.842163 AGTAGTGCCGATTTGAGTAATTTTG 58.158 36.000 0.00 0.00 0.00 2.44
311 312 8.038944 TCTAGTAGTGCCGATTTGAGTAATTTT 58.961 33.333 0.00 0.00 0.00 1.82
312 313 7.553334 TCTAGTAGTGCCGATTTGAGTAATTT 58.447 34.615 0.00 0.00 0.00 1.82
313 314 7.108841 TCTAGTAGTGCCGATTTGAGTAATT 57.891 36.000 0.00 0.00 0.00 1.40
314 315 6.321690 ACTCTAGTAGTGCCGATTTGAGTAAT 59.678 38.462 0.00 0.00 36.93 1.89
315 316 5.651139 ACTCTAGTAGTGCCGATTTGAGTAA 59.349 40.000 0.00 0.00 36.93 2.24
316 317 5.191426 ACTCTAGTAGTGCCGATTTGAGTA 58.809 41.667 0.00 0.00 36.93 2.59
317 318 4.017808 ACTCTAGTAGTGCCGATTTGAGT 58.982 43.478 0.00 0.00 36.93 3.41
318 319 4.640789 ACTCTAGTAGTGCCGATTTGAG 57.359 45.455 0.00 0.00 36.93 3.02
319 320 5.191426 AGTACTCTAGTAGTGCCGATTTGA 58.809 41.667 0.00 0.00 41.41 2.69
320 321 5.297278 AGAGTACTCTAGTAGTGCCGATTTG 59.703 44.000 24.04 0.00 41.41 2.32
321 322 5.438833 AGAGTACTCTAGTAGTGCCGATTT 58.561 41.667 24.04 0.00 41.41 2.17
322 323 5.038651 AGAGTACTCTAGTAGTGCCGATT 57.961 43.478 24.04 0.00 41.41 3.34
323 324 4.693042 AGAGTACTCTAGTAGTGCCGAT 57.307 45.455 24.04 0.00 41.41 4.18
324 325 5.303845 TCATAGAGTACTCTAGTAGTGCCGA 59.696 44.000 30.78 16.53 44.47 5.54
325 326 5.539979 TCATAGAGTACTCTAGTAGTGCCG 58.460 45.833 30.78 14.99 44.47 5.69
326 327 7.989416 AATCATAGAGTACTCTAGTAGTGCC 57.011 40.000 30.78 1.12 44.47 5.01
327 328 9.058174 TGAAATCATAGAGTACTCTAGTAGTGC 57.942 37.037 30.78 21.04 44.47 4.40
354 355 9.181061 TGCAACTGTATACGGAGCTATTATATA 57.819 33.333 23.99 8.05 0.00 0.86
355 356 7.974501 GTGCAACTGTATACGGAGCTATTATAT 59.025 37.037 23.99 0.00 0.00 0.86
356 357 7.310664 GTGCAACTGTATACGGAGCTATTATA 58.689 38.462 23.99 9.06 0.00 0.98
357 358 6.157211 GTGCAACTGTATACGGAGCTATTAT 58.843 40.000 23.99 0.00 0.00 1.28
358 359 5.526115 GTGCAACTGTATACGGAGCTATTA 58.474 41.667 23.99 9.82 0.00 0.98
359 360 4.369182 GTGCAACTGTATACGGAGCTATT 58.631 43.478 23.99 6.95 0.00 1.73
360 361 3.978687 GTGCAACTGTATACGGAGCTAT 58.021 45.455 23.99 1.80 0.00 2.97
361 362 3.431922 GTGCAACTGTATACGGAGCTA 57.568 47.619 23.99 13.88 0.00 3.32
362 363 2.295253 GTGCAACTGTATACGGAGCT 57.705 50.000 23.99 0.00 0.00 4.09
388 389 6.134535 AGGTGGTGGTAGATGATACAAAAA 57.865 37.500 0.00 0.00 0.00 1.94
389 390 5.772393 AGGTGGTGGTAGATGATACAAAA 57.228 39.130 0.00 0.00 0.00 2.44
390 391 5.013704 ACAAGGTGGTGGTAGATGATACAAA 59.986 40.000 0.00 0.00 0.00 2.83
391 392 4.534500 ACAAGGTGGTGGTAGATGATACAA 59.466 41.667 0.00 0.00 0.00 2.41
392 393 4.101114 ACAAGGTGGTGGTAGATGATACA 58.899 43.478 0.00 0.00 0.00 2.29
393 394 4.755266 ACAAGGTGGTGGTAGATGATAC 57.245 45.455 0.00 0.00 0.00 2.24
394 395 4.534500 ACAACAAGGTGGTGGTAGATGATA 59.466 41.667 0.00 0.00 39.97 2.15
395 396 3.330701 ACAACAAGGTGGTGGTAGATGAT 59.669 43.478 0.00 0.00 39.97 2.45
396 397 2.708861 ACAACAAGGTGGTGGTAGATGA 59.291 45.455 0.00 0.00 39.97 2.92
397 398 3.074412 GACAACAAGGTGGTGGTAGATG 58.926 50.000 0.00 0.00 39.97 2.90
398 399 2.979678 AGACAACAAGGTGGTGGTAGAT 59.020 45.455 0.00 0.00 39.97 1.98
399 400 2.104111 CAGACAACAAGGTGGTGGTAGA 59.896 50.000 0.00 0.00 39.97 2.59
400 401 2.104111 TCAGACAACAAGGTGGTGGTAG 59.896 50.000 0.00 0.00 39.97 3.18
401 402 2.120312 TCAGACAACAAGGTGGTGGTA 58.880 47.619 0.00 0.00 39.97 3.25
402 403 0.916086 TCAGACAACAAGGTGGTGGT 59.084 50.000 0.00 0.00 39.97 4.16
403 404 1.308998 GTCAGACAACAAGGTGGTGG 58.691 55.000 0.00 0.00 39.97 4.61
404 405 0.937304 CGTCAGACAACAAGGTGGTG 59.063 55.000 0.41 0.00 41.80 4.17
405 406 0.539986 ACGTCAGACAACAAGGTGGT 59.460 50.000 0.41 0.00 0.00 4.16
406 407 0.937304 CACGTCAGACAACAAGGTGG 59.063 55.000 0.41 0.00 0.00 4.61
407 408 1.593006 GTCACGTCAGACAACAAGGTG 59.407 52.381 0.41 0.00 38.40 4.00
408 409 1.206132 TGTCACGTCAGACAACAAGGT 59.794 47.619 6.27 0.00 44.92 3.50
409 410 1.934589 TGTCACGTCAGACAACAAGG 58.065 50.000 6.27 0.00 44.92 3.61
416 417 0.389948 GGGTCCATGTCACGTCAGAC 60.390 60.000 0.00 0.00 38.99 3.51
417 418 0.541998 AGGGTCCATGTCACGTCAGA 60.542 55.000 0.00 0.00 0.00 3.27
418 419 0.321671 AAGGGTCCATGTCACGTCAG 59.678 55.000 0.00 0.00 0.00 3.51
419 420 0.762418 AAAGGGTCCATGTCACGTCA 59.238 50.000 0.00 0.00 0.00 4.35
420 421 1.156736 CAAAGGGTCCATGTCACGTC 58.843 55.000 0.00 0.00 0.00 4.34
421 422 0.889186 GCAAAGGGTCCATGTCACGT 60.889 55.000 0.00 0.00 0.00 4.49
422 423 0.888736 TGCAAAGGGTCCATGTCACG 60.889 55.000 0.00 0.00 0.00 4.35
423 424 1.327303 TTGCAAAGGGTCCATGTCAC 58.673 50.000 0.00 0.00 0.00 3.67
424 425 2.079170 TTTGCAAAGGGTCCATGTCA 57.921 45.000 8.05 0.00 0.00 3.58
425 426 3.006752 TGAATTTGCAAAGGGTCCATGTC 59.993 43.478 18.19 4.36 0.00 3.06
426 427 2.971330 TGAATTTGCAAAGGGTCCATGT 59.029 40.909 18.19 0.00 0.00 3.21
427 428 3.592059 CTGAATTTGCAAAGGGTCCATG 58.408 45.455 18.19 4.86 0.00 3.66
428 429 2.568509 CCTGAATTTGCAAAGGGTCCAT 59.431 45.455 18.19 0.00 0.00 3.41
429 430 1.969923 CCTGAATTTGCAAAGGGTCCA 59.030 47.619 18.19 9.24 0.00 4.02
430 431 1.970640 ACCTGAATTTGCAAAGGGTCC 59.029 47.619 18.19 5.26 33.87 4.46
431 432 2.029020 GGACCTGAATTTGCAAAGGGTC 60.029 50.000 28.64 28.64 40.44 4.46
432 433 1.970640 GGACCTGAATTTGCAAAGGGT 59.029 47.619 18.19 19.83 33.87 4.34
433 434 2.232208 GAGGACCTGAATTTGCAAAGGG 59.768 50.000 18.19 17.13 33.87 3.95
434 435 3.057033 CAGAGGACCTGAATTTGCAAAGG 60.057 47.826 18.19 15.09 45.78 3.11
435 436 4.170292 CAGAGGACCTGAATTTGCAAAG 57.830 45.455 18.19 5.94 45.78 2.77
446 447 0.324183 TGGCTCTCTCAGAGGACCTG 60.324 60.000 13.31 0.00 42.54 4.00
447 448 0.411452 TTGGCTCTCTCAGAGGACCT 59.589 55.000 13.31 0.00 42.54 3.85
448 449 1.206849 CTTTGGCTCTCTCAGAGGACC 59.793 57.143 0.57 4.37 42.54 4.46
449 450 1.405391 GCTTTGGCTCTCTCAGAGGAC 60.405 57.143 0.57 0.00 42.54 3.85
450 451 0.901124 GCTTTGGCTCTCTCAGAGGA 59.099 55.000 0.57 0.00 42.54 3.71
451 452 3.457099 GCTTTGGCTCTCTCAGAGG 57.543 57.895 0.57 0.00 42.54 3.69
462 463 4.998033 ACTTGTAGTTAGAGAAGCTTTGGC 59.002 41.667 0.00 0.00 39.06 4.52
463 464 5.106908 GCACTTGTAGTTAGAGAAGCTTTGG 60.107 44.000 0.00 0.00 0.00 3.28
464 465 5.698545 AGCACTTGTAGTTAGAGAAGCTTTG 59.301 40.000 0.00 0.00 0.00 2.77
465 466 5.859495 AGCACTTGTAGTTAGAGAAGCTTT 58.141 37.500 0.00 0.00 0.00 3.51
466 467 5.476091 AGCACTTGTAGTTAGAGAAGCTT 57.524 39.130 0.00 0.00 0.00 3.74
467 468 5.474825 GAAGCACTTGTAGTTAGAGAAGCT 58.525 41.667 0.00 0.00 0.00 3.74
468 469 4.324936 CGAAGCACTTGTAGTTAGAGAAGC 59.675 45.833 0.00 0.00 0.00 3.86
469 470 5.700846 TCGAAGCACTTGTAGTTAGAGAAG 58.299 41.667 0.00 0.00 0.00 2.85
470 471 5.241064 ACTCGAAGCACTTGTAGTTAGAGAA 59.759 40.000 9.60 0.00 0.00 2.87
471 472 4.760715 ACTCGAAGCACTTGTAGTTAGAGA 59.239 41.667 9.60 0.00 0.00 3.10
472 473 4.854291 CACTCGAAGCACTTGTAGTTAGAG 59.146 45.833 0.00 0.00 0.00 2.43
473 474 4.277672 ACACTCGAAGCACTTGTAGTTAGA 59.722 41.667 0.00 0.00 0.00 2.10
474 475 4.547532 ACACTCGAAGCACTTGTAGTTAG 58.452 43.478 0.00 0.00 0.00 2.34
475 476 4.543692 GACACTCGAAGCACTTGTAGTTA 58.456 43.478 0.00 0.00 0.00 2.24
476 477 3.381949 GACACTCGAAGCACTTGTAGTT 58.618 45.455 0.00 0.00 0.00 2.24
477 478 2.288273 GGACACTCGAAGCACTTGTAGT 60.288 50.000 0.00 0.00 0.00 2.73
478 479 2.329379 GGACACTCGAAGCACTTGTAG 58.671 52.381 0.00 0.00 0.00 2.74
479 480 1.000506 GGGACACTCGAAGCACTTGTA 59.999 52.381 0.00 0.00 0.00 2.41
480 481 0.249911 GGGACACTCGAAGCACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
481 482 0.249868 TGGGACACTCGAAGCACTTG 60.250 55.000 0.00 0.00 0.00 3.16
482 483 0.034059 CTGGGACACTCGAAGCACTT 59.966 55.000 0.00 0.00 0.00 3.16
483 484 1.668294 CTGGGACACTCGAAGCACT 59.332 57.895 0.00 0.00 0.00 4.40
484 485 1.374758 CCTGGGACACTCGAAGCAC 60.375 63.158 0.00 0.00 0.00 4.40
485 486 2.583441 CCCTGGGACACTCGAAGCA 61.583 63.158 7.01 0.00 0.00 3.91
486 487 2.266055 CCCTGGGACACTCGAAGC 59.734 66.667 7.01 0.00 0.00 3.86
487 488 1.185618 TGACCCTGGGACACTCGAAG 61.186 60.000 22.23 0.00 0.00 3.79
488 489 0.761323 TTGACCCTGGGACACTCGAA 60.761 55.000 22.23 0.44 0.00 3.71
489 490 0.544357 ATTGACCCTGGGACACTCGA 60.544 55.000 22.23 6.60 0.00 4.04
490 491 0.391661 CATTGACCCTGGGACACTCG 60.392 60.000 22.23 6.52 0.00 4.18
491 492 0.984230 TCATTGACCCTGGGACACTC 59.016 55.000 22.23 6.96 0.00 3.51
492 493 1.673767 ATCATTGACCCTGGGACACT 58.326 50.000 22.23 11.29 0.00 3.55
493 494 2.025887 AGAATCATTGACCCTGGGACAC 60.026 50.000 22.23 10.81 0.00 3.67
494 495 2.239654 GAGAATCATTGACCCTGGGACA 59.760 50.000 22.23 17.81 33.17 4.02
495 496 2.507471 AGAGAATCATTGACCCTGGGAC 59.493 50.000 22.23 14.85 37.82 4.46
496 497 2.850833 AGAGAATCATTGACCCTGGGA 58.149 47.619 22.23 0.00 37.82 4.37
497 498 3.659183 AAGAGAATCATTGACCCTGGG 57.341 47.619 12.28 12.28 37.82 4.45
498 499 4.338879 ACAAAGAGAATCATTGACCCTGG 58.661 43.478 2.11 0.00 45.94 4.45
499 500 5.972107 AACAAAGAGAATCATTGACCCTG 57.028 39.130 2.11 0.00 45.94 4.45
500 501 5.643777 CGTAACAAAGAGAATCATTGACCCT 59.356 40.000 2.11 0.00 45.94 4.34
501 502 5.642063 TCGTAACAAAGAGAATCATTGACCC 59.358 40.000 2.11 0.00 45.94 4.46
502 503 6.721571 TCGTAACAAAGAGAATCATTGACC 57.278 37.500 2.11 0.00 45.94 4.02
503 504 9.088512 AGTATCGTAACAAAGAGAATCATTGAC 57.911 33.333 2.11 0.00 45.94 3.18
504 505 9.302345 GAGTATCGTAACAAAGAGAATCATTGA 57.698 33.333 2.11 0.00 45.94 2.57
541 542 3.498397 AGATCACAACGATGCGTCTTTTT 59.502 39.130 4.05 0.00 39.99 1.94
542 543 3.067106 AGATCACAACGATGCGTCTTTT 58.933 40.909 4.05 0.00 39.99 2.27
543 544 2.668457 GAGATCACAACGATGCGTCTTT 59.332 45.455 4.05 0.00 39.99 2.52
544 545 2.094494 AGAGATCACAACGATGCGTCTT 60.094 45.455 4.05 0.00 39.99 3.01
545 546 1.474478 AGAGATCACAACGATGCGTCT 59.526 47.619 4.05 0.00 39.99 4.18
546 547 1.914634 AGAGATCACAACGATGCGTC 58.085 50.000 0.00 0.00 39.99 5.19
547 548 2.791503 CGTAGAGATCACAACGATGCGT 60.792 50.000 7.69 0.00 43.97 5.24
548 549 1.775770 CGTAGAGATCACAACGATGCG 59.224 52.381 7.69 0.00 37.53 4.73
549 550 2.784380 GTCGTAGAGATCACAACGATGC 59.216 50.000 16.13 4.83 45.04 3.91
550 551 4.031691 CAGTCGTAGAGATCACAACGATG 58.968 47.826 16.13 12.29 45.04 3.84
551 552 3.939592 TCAGTCGTAGAGATCACAACGAT 59.060 43.478 16.13 6.39 45.04 3.73
552 553 3.332034 TCAGTCGTAGAGATCACAACGA 58.668 45.455 11.03 11.03 41.63 3.85
553 554 3.486043 CCTCAGTCGTAGAGATCACAACG 60.486 52.174 0.00 1.28 36.95 4.10
554 555 3.732471 GCCTCAGTCGTAGAGATCACAAC 60.732 52.174 0.00 0.00 36.95 3.32
555 556 2.423892 GCCTCAGTCGTAGAGATCACAA 59.576 50.000 0.00 0.00 36.95 3.33
556 557 2.017782 GCCTCAGTCGTAGAGATCACA 58.982 52.381 0.00 0.00 36.95 3.58
557 558 2.017782 TGCCTCAGTCGTAGAGATCAC 58.982 52.381 0.00 0.00 36.95 3.06
558 559 2.293170 CTGCCTCAGTCGTAGAGATCA 58.707 52.381 0.00 0.00 36.95 2.92
559 560 1.001815 GCTGCCTCAGTCGTAGAGATC 60.002 57.143 0.00 0.00 36.95 2.75
560 561 1.028905 GCTGCCTCAGTCGTAGAGAT 58.971 55.000 0.00 0.00 36.95 2.75
561 562 0.322546 TGCTGCCTCAGTCGTAGAGA 60.323 55.000 0.00 0.00 36.95 3.10
562 563 0.100325 CTGCTGCCTCAGTCGTAGAG 59.900 60.000 0.00 0.00 36.95 2.43
563 564 0.322546 TCTGCTGCCTCAGTCGTAGA 60.323 55.000 0.00 0.00 35.63 2.59
564 565 0.743688 ATCTGCTGCCTCAGTCGTAG 59.256 55.000 0.00 0.00 35.63 3.51
565 566 0.457443 CATCTGCTGCCTCAGTCGTA 59.543 55.000 0.00 0.00 35.63 3.43
566 567 1.217511 CATCTGCTGCCTCAGTCGT 59.782 57.895 0.00 0.00 35.63 4.34
567 568 2.172372 GCATCTGCTGCCTCAGTCG 61.172 63.158 0.00 0.00 45.66 4.18
568 569 3.810812 GCATCTGCTGCCTCAGTC 58.189 61.111 0.00 0.00 45.66 3.51
578 579 2.523015 GTGTGTTAGCATTGCATCTGC 58.477 47.619 11.91 12.56 39.97 4.26
579 580 2.751259 AGGTGTGTTAGCATTGCATCTG 59.249 45.455 11.91 0.00 0.00 2.90
580 581 3.012518 GAGGTGTGTTAGCATTGCATCT 58.987 45.455 11.91 0.00 0.00 2.90
581 582 2.749076 TGAGGTGTGTTAGCATTGCATC 59.251 45.455 11.91 1.36 0.00 3.91
582 583 2.794103 TGAGGTGTGTTAGCATTGCAT 58.206 42.857 11.91 0.00 0.00 3.96
583 584 2.268762 TGAGGTGTGTTAGCATTGCA 57.731 45.000 11.91 0.00 0.00 4.08
584 585 2.749076 TCATGAGGTGTGTTAGCATTGC 59.251 45.455 0.00 0.00 0.00 3.56
585 586 3.181517 CGTCATGAGGTGTGTTAGCATTG 60.182 47.826 7.25 0.00 0.00 2.82
586 587 3.002791 CGTCATGAGGTGTGTTAGCATT 58.997 45.455 7.25 0.00 0.00 3.56
587 588 2.621338 CGTCATGAGGTGTGTTAGCAT 58.379 47.619 7.25 0.00 0.00 3.79
588 589 1.337728 CCGTCATGAGGTGTGTTAGCA 60.338 52.381 13.98 0.00 0.00 3.49
589 590 1.359848 CCGTCATGAGGTGTGTTAGC 58.640 55.000 13.98 0.00 0.00 3.09
590 591 1.337728 TGCCGTCATGAGGTGTGTTAG 60.338 52.381 13.98 0.00 0.00 2.34
591 592 0.682292 TGCCGTCATGAGGTGTGTTA 59.318 50.000 13.98 0.00 0.00 2.41
592 593 0.179032 TTGCCGTCATGAGGTGTGTT 60.179 50.000 13.98 0.00 0.00 3.32
593 594 0.884704 GTTGCCGTCATGAGGTGTGT 60.885 55.000 13.98 0.00 0.00 3.72
594 595 0.884259 TGTTGCCGTCATGAGGTGTG 60.884 55.000 13.98 0.73 0.00 3.82
595 596 0.036732 ATGTTGCCGTCATGAGGTGT 59.963 50.000 13.98 0.00 0.00 4.16
596 597 0.729116 GATGTTGCCGTCATGAGGTG 59.271 55.000 13.98 7.02 0.00 4.00
597 598 0.740868 CGATGTTGCCGTCATGAGGT 60.741 55.000 13.98 0.00 0.00 3.85
598 599 0.460109 TCGATGTTGCCGTCATGAGG 60.460 55.000 8.47 8.47 0.00 3.86
599 600 0.647410 GTCGATGTTGCCGTCATGAG 59.353 55.000 0.00 0.00 0.00 2.90
600 601 0.037790 TGTCGATGTTGCCGTCATGA 60.038 50.000 0.00 0.00 0.00 3.07
601 602 1.009078 ATGTCGATGTTGCCGTCATG 58.991 50.000 0.00 0.00 35.28 3.07
602 603 1.665679 GAATGTCGATGTTGCCGTCAT 59.334 47.619 0.00 0.00 37.38 3.06
603 604 1.075542 GAATGTCGATGTTGCCGTCA 58.924 50.000 0.00 0.00 0.00 4.35
604 605 1.075542 TGAATGTCGATGTTGCCGTC 58.924 50.000 0.00 0.00 0.00 4.79
605 606 0.796312 GTGAATGTCGATGTTGCCGT 59.204 50.000 0.00 0.00 0.00 5.68
606 607 0.096976 GGTGAATGTCGATGTTGCCG 59.903 55.000 0.00 0.00 0.00 5.69
607 608 1.453155 AGGTGAATGTCGATGTTGCC 58.547 50.000 0.00 0.00 0.00 4.52
608 609 2.414559 CCAAGGTGAATGTCGATGTTGC 60.415 50.000 0.00 0.00 0.00 4.17
609 610 2.414559 GCCAAGGTGAATGTCGATGTTG 60.415 50.000 0.00 0.00 0.00 3.33
610 611 1.812571 GCCAAGGTGAATGTCGATGTT 59.187 47.619 0.00 0.00 0.00 2.71
611 612 1.003580 AGCCAAGGTGAATGTCGATGT 59.996 47.619 0.00 0.00 0.00 3.06
612 613 1.742761 AGCCAAGGTGAATGTCGATG 58.257 50.000 0.00 0.00 0.00 3.84
613 614 3.627395 TTAGCCAAGGTGAATGTCGAT 57.373 42.857 0.00 0.00 0.00 3.59
614 615 3.071479 GTTTAGCCAAGGTGAATGTCGA 58.929 45.455 0.00 0.00 0.00 4.20
615 616 3.074412 AGTTTAGCCAAGGTGAATGTCG 58.926 45.455 0.00 0.00 0.00 4.35
616 617 4.327680 AGAGTTTAGCCAAGGTGAATGTC 58.672 43.478 0.00 0.00 0.00 3.06
617 618 4.042187 AGAGAGTTTAGCCAAGGTGAATGT 59.958 41.667 0.00 0.00 0.00 2.71
618 619 4.583871 AGAGAGTTTAGCCAAGGTGAATG 58.416 43.478 0.00 0.00 0.00 2.67
619 620 4.287067 TGAGAGAGTTTAGCCAAGGTGAAT 59.713 41.667 0.00 0.00 0.00 2.57
620 621 3.646162 TGAGAGAGTTTAGCCAAGGTGAA 59.354 43.478 0.00 0.00 0.00 3.18
621 622 3.239449 TGAGAGAGTTTAGCCAAGGTGA 58.761 45.455 0.00 0.00 0.00 4.02
622 623 3.594134 CTGAGAGAGTTTAGCCAAGGTG 58.406 50.000 0.00 0.00 0.00 4.00
623 624 2.569404 CCTGAGAGAGTTTAGCCAAGGT 59.431 50.000 0.00 0.00 0.00 3.50
624 625 2.569404 ACCTGAGAGAGTTTAGCCAAGG 59.431 50.000 0.00 0.00 0.00 3.61
625 626 3.594134 CACCTGAGAGAGTTTAGCCAAG 58.406 50.000 0.00 0.00 0.00 3.61
626 627 2.303022 CCACCTGAGAGAGTTTAGCCAA 59.697 50.000 0.00 0.00 0.00 4.52
627 628 1.902508 CCACCTGAGAGAGTTTAGCCA 59.097 52.381 0.00 0.00 0.00 4.75
628 629 2.167487 CTCCACCTGAGAGAGTTTAGCC 59.833 54.545 0.00 0.00 44.42 3.93
629 630 2.167487 CCTCCACCTGAGAGAGTTTAGC 59.833 54.545 0.00 0.00 44.42 3.09
630 631 2.763448 CCCTCCACCTGAGAGAGTTTAG 59.237 54.545 0.00 0.00 44.42 1.85
631 632 2.382305 TCCCTCCACCTGAGAGAGTTTA 59.618 50.000 0.00 0.00 44.42 2.01
632 633 1.150135 TCCCTCCACCTGAGAGAGTTT 59.850 52.381 0.00 0.00 44.42 2.66
633 634 0.787084 TCCCTCCACCTGAGAGAGTT 59.213 55.000 0.00 0.00 44.42 3.01
634 635 1.014804 ATCCCTCCACCTGAGAGAGT 58.985 55.000 0.00 0.00 44.42 3.24
635 636 1.703411 GATCCCTCCACCTGAGAGAG 58.297 60.000 0.00 0.00 44.42 3.20
636 637 0.263172 GGATCCCTCCACCTGAGAGA 59.737 60.000 0.00 0.00 44.42 3.10
637 638 0.031716 TGGATCCCTCCACCTGAGAG 60.032 60.000 9.90 0.00 46.95 3.20
638 639 2.105213 TGGATCCCTCCACCTGAGA 58.895 57.895 9.90 0.00 46.95 3.27
639 640 4.816109 TGGATCCCTCCACCTGAG 57.184 61.111 9.90 0.00 46.95 3.35
646 647 0.543749 CCAACTCAGTGGATCCCTCC 59.456 60.000 9.90 0.00 41.65 4.30
647 648 1.208293 GACCAACTCAGTGGATCCCTC 59.792 57.143 9.90 2.36 41.65 4.30
648 649 1.280457 GACCAACTCAGTGGATCCCT 58.720 55.000 9.90 2.84 41.65 4.20
649 650 0.108138 CGACCAACTCAGTGGATCCC 60.108 60.000 9.90 0.11 41.65 3.85
650 651 0.895530 TCGACCAACTCAGTGGATCC 59.104 55.000 4.20 4.20 41.65 3.36
651 652 2.028930 AGTTCGACCAACTCAGTGGATC 60.029 50.000 0.00 0.00 42.07 3.36
652 653 1.971357 AGTTCGACCAACTCAGTGGAT 59.029 47.619 0.00 0.00 42.07 3.41
653 654 1.068588 CAGTTCGACCAACTCAGTGGA 59.931 52.381 0.00 0.00 44.14 4.02
654 655 1.502231 CAGTTCGACCAACTCAGTGG 58.498 55.000 0.00 0.00 44.14 4.00
655 656 1.202533 ACCAGTTCGACCAACTCAGTG 60.203 52.381 0.00 0.00 44.14 3.66
656 657 1.120530 ACCAGTTCGACCAACTCAGT 58.879 50.000 0.00 0.00 44.14 3.41
657 658 1.867233 CAACCAGTTCGACCAACTCAG 59.133 52.381 0.00 0.00 44.14 3.35
658 659 1.948104 CAACCAGTTCGACCAACTCA 58.052 50.000 0.00 0.00 44.14 3.41
659 660 0.586802 GCAACCAGTTCGACCAACTC 59.413 55.000 0.00 0.00 44.14 3.01
661 662 0.028902 GTGCAACCAGTTCGACCAAC 59.971 55.000 0.00 0.00 34.86 3.77
662 663 2.399856 GTGCAACCAGTTCGACCAA 58.600 52.632 0.00 0.00 0.00 3.67
663 664 4.134623 GTGCAACCAGTTCGACCA 57.865 55.556 0.00 0.00 0.00 4.02
674 675 3.003897 TCCATTACTTTGAACGGTGCAAC 59.996 43.478 0.00 0.00 0.00 4.17
675 676 3.003897 GTCCATTACTTTGAACGGTGCAA 59.996 43.478 0.00 0.00 0.00 4.08
676 677 2.550606 GTCCATTACTTTGAACGGTGCA 59.449 45.455 0.00 0.00 0.00 4.57
677 678 2.550606 TGTCCATTACTTTGAACGGTGC 59.449 45.455 0.00 0.00 0.00 5.01
678 679 4.822036 TTGTCCATTACTTTGAACGGTG 57.178 40.909 0.00 0.00 0.00 4.94
679 680 4.641094 TGTTTGTCCATTACTTTGAACGGT 59.359 37.500 0.00 0.00 0.00 4.83
680 681 4.973663 GTGTTTGTCCATTACTTTGAACGG 59.026 41.667 0.00 0.00 0.00 4.44
681 682 5.574082 TGTGTTTGTCCATTACTTTGAACG 58.426 37.500 0.00 0.00 0.00 3.95
682 683 8.564574 TCTATGTGTTTGTCCATTACTTTGAAC 58.435 33.333 0.00 0.00 0.00 3.18
683 684 8.684386 TCTATGTGTTTGTCCATTACTTTGAA 57.316 30.769 0.00 0.00 0.00 2.69
684 685 7.094805 GCTCTATGTGTTTGTCCATTACTTTGA 60.095 37.037 0.00 0.00 0.00 2.69
685 686 7.023575 GCTCTATGTGTTTGTCCATTACTTTG 58.976 38.462 0.00 0.00 0.00 2.77
686 687 6.714810 TGCTCTATGTGTTTGTCCATTACTTT 59.285 34.615 0.00 0.00 0.00 2.66
687 688 6.237901 TGCTCTATGTGTTTGTCCATTACTT 58.762 36.000 0.00 0.00 0.00 2.24
688 689 5.804639 TGCTCTATGTGTTTGTCCATTACT 58.195 37.500 0.00 0.00 0.00 2.24
689 690 6.238484 GGATGCTCTATGTGTTTGTCCATTAC 60.238 42.308 0.00 0.00 0.00 1.89
690 691 5.822519 GGATGCTCTATGTGTTTGTCCATTA 59.177 40.000 0.00 0.00 0.00 1.90
691 692 4.641989 GGATGCTCTATGTGTTTGTCCATT 59.358 41.667 0.00 0.00 0.00 3.16
692 693 4.202441 GGATGCTCTATGTGTTTGTCCAT 58.798 43.478 0.00 0.00 0.00 3.41
693 694 3.609853 GGATGCTCTATGTGTTTGTCCA 58.390 45.455 0.00 0.00 0.00 4.02
694 695 2.945668 GGGATGCTCTATGTGTTTGTCC 59.054 50.000 0.00 0.00 0.00 4.02
695 696 2.945668 GGGGATGCTCTATGTGTTTGTC 59.054 50.000 0.00 0.00 0.00 3.18
696 697 2.357154 GGGGGATGCTCTATGTGTTTGT 60.357 50.000 0.00 0.00 0.00 2.83
697 698 2.301346 GGGGGATGCTCTATGTGTTTG 58.699 52.381 0.00 0.00 0.00 2.93
698 699 1.134098 CGGGGGATGCTCTATGTGTTT 60.134 52.381 0.00 0.00 0.00 2.83
699 700 0.469917 CGGGGGATGCTCTATGTGTT 59.530 55.000 0.00 0.00 0.00 3.32
700 701 0.398522 TCGGGGGATGCTCTATGTGT 60.399 55.000 0.00 0.00 0.00 3.72
701 702 0.034059 GTCGGGGGATGCTCTATGTG 59.966 60.000 0.00 0.00 0.00 3.21
702 703 0.105453 AGTCGGGGGATGCTCTATGT 60.105 55.000 0.00 0.00 0.00 2.29
703 704 0.319728 CAGTCGGGGGATGCTCTATG 59.680 60.000 0.00 0.00 0.00 2.23
704 705 0.833834 CCAGTCGGGGGATGCTCTAT 60.834 60.000 0.00 0.00 0.00 1.98
705 706 1.457643 CCAGTCGGGGGATGCTCTA 60.458 63.158 0.00 0.00 0.00 2.43
706 707 2.765807 CCAGTCGGGGGATGCTCT 60.766 66.667 0.00 0.00 0.00 4.09
725 726 4.468769 ATCAGTACCCGGGGCCGA 62.469 66.667 27.92 15.97 42.83 5.54
726 727 3.925090 GATCAGTACCCGGGGCCG 61.925 72.222 27.92 10.46 39.44 6.13
727 728 3.925090 CGATCAGTACCCGGGGCC 61.925 72.222 27.92 15.00 0.00 5.80
728 729 2.156051 GATCGATCAGTACCCGGGGC 62.156 65.000 27.92 17.62 0.00 5.80
729 730 0.826256 TGATCGATCAGTACCCGGGG 60.826 60.000 27.92 12.73 32.11 5.73
730 731 2.728397 TGATCGATCAGTACCCGGG 58.272 57.895 23.99 22.25 32.11 5.73
755 756 1.516365 GAGGGGAATCGCTCGATCGA 61.516 60.000 18.32 18.32 41.90 3.59
756 757 1.081108 GAGGGGAATCGCTCGATCG 60.081 63.158 9.36 9.36 41.90 3.69
757 758 4.976996 GAGGGGAATCGCTCGATC 57.023 61.111 5.17 0.17 41.90 3.69
762 763 1.079127 CAACGTGAGGGGAATCGCT 60.079 57.895 0.00 0.00 38.99 4.93
763 764 2.106683 CCAACGTGAGGGGAATCGC 61.107 63.158 0.00 0.00 32.12 4.58
764 765 4.201951 CCAACGTGAGGGGAATCG 57.798 61.111 0.00 0.00 32.12 3.34
805 808 3.376935 ATCTCAACGGCGCCTCCAG 62.377 63.158 26.68 14.61 34.01 3.86
806 809 3.371097 GATCTCAACGGCGCCTCCA 62.371 63.158 26.68 4.34 34.01 3.86
811 814 0.595310 GAGGTAGATCTCAACGGCGC 60.595 60.000 6.90 0.00 34.13 6.53
931 937 1.782140 AGACCCTAGCTACCCTCTACC 59.218 57.143 0.00 0.00 0.00 3.18
992 1006 0.389817 CGAACTCGCCATCTGGTCAA 60.390 55.000 0.00 0.00 37.57 3.18
993 1007 1.215382 CGAACTCGCCATCTGGTCA 59.785 57.895 0.00 0.00 37.57 4.02
994 1008 1.519455 CCGAACTCGCCATCTGGTC 60.519 63.158 0.00 0.00 38.18 4.02
997 1011 1.424493 GAAGCCGAACTCGCCATCTG 61.424 60.000 0.00 0.00 38.18 2.90
998 1012 1.153549 GAAGCCGAACTCGCCATCT 60.154 57.895 0.00 0.00 38.18 2.90
1023 1037 2.282958 TCGTCTGTTCCCGAGCCT 60.283 61.111 0.00 0.00 0.00 4.58
1038 1052 4.415735 TCTTCATCATCTCTTCAACGTCG 58.584 43.478 0.00 0.00 0.00 5.12
1041 1055 5.063186 CAGGTTCTTCATCATCTCTTCAACG 59.937 44.000 0.00 0.00 0.00 4.10
1047 1061 2.172293 GCCCAGGTTCTTCATCATCTCT 59.828 50.000 0.00 0.00 0.00 3.10
1071 1085 4.279671 ACATCATCTAGGTCATCTTCCGTC 59.720 45.833 0.00 0.00 0.00 4.79
1104 1118 4.841422 CTTCTGATGGAACCTGTTGATCT 58.159 43.478 0.00 0.00 0.00 2.75
1120 1134 4.069232 CCTGACGGCCGCTTCTGA 62.069 66.667 28.58 0.00 0.00 3.27
1131 1145 1.742880 CACAGCCATCCACCTGACG 60.743 63.158 0.00 0.00 33.40 4.35
1155 1169 6.433093 GGTTGTATTCTTTGGGTGTATGAACT 59.567 38.462 0.00 0.00 0.00 3.01
1196 1210 1.001764 CAGGCAGCCCTCATGTTGA 60.002 57.895 8.22 0.00 40.33 3.18
1212 1226 0.469070 CTTCCTGAGCCAGATCCCAG 59.531 60.000 4.00 0.00 32.44 4.45
1224 1238 2.619590 GGGGCGGATTTTTACTTCCTGA 60.620 50.000 0.00 0.00 0.00 3.86
1245 1259 2.287069 CGTGTATAGGTTGCTCTCGAGG 60.287 54.545 13.56 4.50 0.00 4.63
1272 1286 2.494059 CAGTCACCCAAACACGAGAAT 58.506 47.619 0.00 0.00 0.00 2.40
1287 1301 0.034756 CCATCACACGTTCCCAGTCA 59.965 55.000 0.00 0.00 0.00 3.41
1350 1364 7.288810 TGGCTTTGTAAATCCATCATATTCC 57.711 36.000 0.00 0.00 0.00 3.01
1443 1500 2.353610 GGCCAGGGCTTTCACCATG 61.354 63.158 10.60 0.00 41.19 3.66
1461 1518 7.379529 GCATATATGAGTTCACCAATTTTTCCG 59.620 37.037 17.10 0.00 0.00 4.30
1523 1580 1.078759 GATCTTCACCCTGACACGCG 61.079 60.000 3.53 3.53 0.00 6.01
1542 1599 1.374560 TGAGTGGTTTGTGGACGTTG 58.625 50.000 0.00 0.00 0.00 4.10
1583 1640 0.178932 AACCTTCCTTTTGCCCTCCC 60.179 55.000 0.00 0.00 0.00 4.30
1587 1644 3.466836 CAAGAAAACCTTCCTTTTGCCC 58.533 45.455 0.00 0.00 31.42 5.36
1611 1668 3.961477 TCGGGCAATCGTTCATATTTG 57.039 42.857 0.00 0.00 0.00 2.32
1677 1734 1.005512 TGGATGAACACCGTCACCG 60.006 57.895 0.00 0.00 32.38 4.94
1698 1755 0.596082 TTTTAAAGACCAGCGCCTGC 59.404 50.000 2.29 0.00 43.24 4.85
1701 1758 2.986479 CACATTTTTAAAGACCAGCGCC 59.014 45.455 2.29 0.00 0.00 6.53
1753 1810 0.250510 TGACGTGGCACCATTAGCAA 60.251 50.000 12.86 0.00 0.00 3.91
1951 2067 7.337436 CCGTTGGACCACTTTATAAATTCCTAA 59.663 37.037 0.00 0.00 0.00 2.69
2374 2491 2.435938 GCGCGATGGGGAAACAGA 60.436 61.111 12.10 0.00 0.00 3.41
2437 2554 4.702081 AGTGACGACGAGCACGGC 62.702 66.667 8.74 3.26 45.02 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.