Multiple sequence alignment - TraesCS7A01G352300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G352300 chr7A 100.000 3539 0 0 1 3539 515982975 515986513 0.000000e+00 6536.0
1 TraesCS7A01G352300 chr7A 96.241 133 5 0 1 133 515978291 515978423 5.950000e-53 219.0
2 TraesCS7A01G352300 chr7D 91.592 2236 112 37 562 2741 479112127 479109912 0.000000e+00 3018.0
3 TraesCS7A01G352300 chr7D 84.311 631 46 21 2839 3431 479109841 479109226 5.130000e-158 568.0
4 TraesCS7A01G352300 chr7D 87.440 207 11 8 293 493 479112612 479112415 1.280000e-54 224.0
5 TraesCS7A01G352300 chr7B 91.071 2240 112 37 562 2738 504837844 504835630 0.000000e+00 2948.0
6 TraesCS7A01G352300 chr7B 82.123 716 42 31 2839 3489 504835499 504834805 5.200000e-148 534.0
7 TraesCS7A01G352300 chr7B 84.091 352 40 11 2125 2473 553148279 553147941 3.410000e-85 326.0
8 TraesCS7A01G352300 chr7B 87.923 207 9 8 293 493 504838330 504838134 2.750000e-56 230.0
9 TraesCS7A01G352300 chr7B 94.737 133 7 0 1 133 685051389 685051257 1.290000e-49 207.0
10 TraesCS7A01G352300 chr7B 91.667 144 11 1 1 143 492765159 492765302 7.750000e-47 198.0
11 TraesCS7A01G352300 chr1A 97.037 135 4 0 1 135 232104066 232104200 9.880000e-56 228.0
12 TraesCS7A01G352300 chr1A 96.241 133 5 0 1 133 232100862 232100994 5.950000e-53 219.0
13 TraesCS7A01G352300 chr5A 94.964 139 7 0 1 139 677909285 677909147 5.950000e-53 219.0
14 TraesCS7A01G352300 chr5A 96.241 133 5 0 1 133 677913956 677913824 5.950000e-53 219.0
15 TraesCS7A01G352300 chr5A 88.816 152 17 0 140 291 547713432 547713281 1.680000e-43 187.0
16 TraesCS7A01G352300 chr5A 93.333 45 2 1 496 539 507113684 507113728 8.200000e-07 65.8
17 TraesCS7A01G352300 chr2B 95.420 131 6 0 3 133 369494884 369495014 3.580000e-50 209.0
18 TraesCS7A01G352300 chr2B 97.297 37 1 0 496 532 547980459 547980423 2.950000e-06 63.9
19 TraesCS7A01G352300 chr2B 94.872 39 2 0 490 528 330895326 330895364 1.060000e-05 62.1
20 TraesCS7A01G352300 chr6A 93.431 137 9 0 1 137 443089648 443089784 1.670000e-48 204.0
21 TraesCS7A01G352300 chr6D 87.838 148 18 0 144 291 454064300 454064153 1.310000e-39 174.0
22 TraesCS7A01G352300 chr4A 87.838 148 18 0 144 291 137523063 137523210 1.310000e-39 174.0
23 TraesCS7A01G352300 chr3A 87.838 148 18 0 144 291 163893625 163893478 1.310000e-39 174.0
24 TraesCS7A01G352300 chr3A 87.162 148 19 0 144 291 494044668 494044815 6.080000e-38 169.0
25 TraesCS7A01G352300 chr3A 92.000 50 2 2 496 545 709558894 709558941 6.340000e-08 69.4
26 TraesCS7A01G352300 chr3A 100.000 31 0 0 497 527 1443361 1443391 1.370000e-04 58.4
27 TraesCS7A01G352300 chr3D 90.698 129 12 0 167 295 300618577 300618705 4.700000e-39 172.0
28 TraesCS7A01G352300 chr3D 87.162 148 19 0 144 291 452487232 452487085 6.080000e-38 169.0
29 TraesCS7A01G352300 chr3D 86.093 151 20 1 142 292 583321965 583322114 1.020000e-35 161.0
30 TraesCS7A01G352300 chr5B 86.000 150 19 1 144 291 526636031 526635882 3.660000e-35 159.0
31 TraesCS7A01G352300 chrUn 100.000 32 0 0 496 527 9311034 9311065 3.820000e-05 60.2
32 TraesCS7A01G352300 chrUn 100.000 32 0 0 496 527 353326940 353326909 3.820000e-05 60.2
33 TraesCS7A01G352300 chrUn 89.362 47 1 3 477 523 439263739 439263781 4.940000e-04 56.5
34 TraesCS7A01G352300 chr1D 100.000 31 0 0 497 527 362405410 362405380 1.370000e-04 58.4
35 TraesCS7A01G352300 chr4D 94.444 36 2 0 1162 1197 418615811 418615846 4.940000e-04 56.5
36 TraesCS7A01G352300 chr4B 96.970 33 1 0 1168 1200 515167919 515167887 4.940000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G352300 chr7A 515982975 515986513 3538 False 6536.000000 6536 100.000 1 3539 1 chr7A.!!$F2 3538
1 TraesCS7A01G352300 chr7D 479109226 479112612 3386 True 1270.000000 3018 87.781 293 3431 3 chr7D.!!$R1 3138
2 TraesCS7A01G352300 chr7B 504834805 504838330 3525 True 1237.333333 2948 87.039 293 3489 3 chr7B.!!$R3 3196
3 TraesCS7A01G352300 chr1A 232100862 232104200 3338 False 223.500000 228 96.639 1 135 2 chr1A.!!$F1 134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 510 0.034896 CTCACACACGGCTAAACCCT 59.965 55.000 0.0 0.0 33.26 4.34 F
510 517 1.003928 CACGGCTAAACCCTAAACCCT 59.996 52.381 0.0 0.0 33.26 4.34 F
1158 1836 1.148310 ATGCTTCGTTGGTGTTCTCG 58.852 50.000 0.0 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 4324 0.465278 GCTTCTCCCTCCCTGCAATC 60.465 60.000 0.00 0.0 0.0 2.67 R
2424 4867 2.358247 GTGCACAGGTACCCCACG 60.358 66.667 13.17 0.0 0.0 4.94 R
2982 5531 0.103208 CATGTCTGCCTACGTCCTCC 59.897 60.000 0.00 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.337118 CAGCCAGGCAAAAACCCTAA 58.663 50.000 15.80 0.00 0.00 2.69
71 72 3.064958 GCAAAAACCCTAACGCTCCTATC 59.935 47.826 0.00 0.00 0.00 2.08
133 134 2.671070 CACCGAGGCCCTTGACAT 59.329 61.111 0.00 0.00 0.00 3.06
134 135 1.746615 CACCGAGGCCCTTGACATG 60.747 63.158 0.00 0.00 0.00 3.21
137 138 1.026718 CCGAGGCCCTTGACATGTTC 61.027 60.000 0.00 0.00 0.00 3.18
138 139 0.321564 CGAGGCCCTTGACATGTTCA 60.322 55.000 0.00 0.00 0.00 3.18
139 140 1.457346 GAGGCCCTTGACATGTTCAG 58.543 55.000 0.00 0.00 34.94 3.02
140 141 0.773644 AGGCCCTTGACATGTTCAGT 59.226 50.000 0.00 0.00 34.94 3.41
142 143 1.963515 GGCCCTTGACATGTTCAGTTT 59.036 47.619 0.00 0.00 34.94 2.66
143 144 2.029918 GGCCCTTGACATGTTCAGTTTC 60.030 50.000 0.00 0.00 34.94 2.78
145 146 3.138304 CCCTTGACATGTTCAGTTTCGA 58.862 45.455 0.00 0.00 34.94 3.71
147 148 4.378770 CCCTTGACATGTTCAGTTTCGATG 60.379 45.833 0.00 0.00 34.94 3.84
148 149 4.452114 CCTTGACATGTTCAGTTTCGATGA 59.548 41.667 0.00 0.00 34.94 2.92
149 150 5.390251 CCTTGACATGTTCAGTTTCGATGAG 60.390 44.000 0.00 0.00 34.94 2.90
150 151 3.996363 TGACATGTTCAGTTTCGATGAGG 59.004 43.478 0.00 0.00 0.00 3.86
152 153 3.007940 ACATGTTCAGTTTCGATGAGGGA 59.992 43.478 0.00 0.00 0.00 4.20
153 154 3.762407 TGTTCAGTTTCGATGAGGGAA 57.238 42.857 0.00 0.00 0.00 3.97
154 155 4.079980 TGTTCAGTTTCGATGAGGGAAA 57.920 40.909 0.00 0.00 0.00 3.13
155 156 4.065088 TGTTCAGTTTCGATGAGGGAAAG 58.935 43.478 0.00 0.00 34.32 2.62
156 157 3.334583 TCAGTTTCGATGAGGGAAAGG 57.665 47.619 0.00 0.00 34.32 3.11
158 159 1.351017 AGTTTCGATGAGGGAAAGGCA 59.649 47.619 0.00 0.00 34.32 4.75
159 160 2.159382 GTTTCGATGAGGGAAAGGCAA 58.841 47.619 0.00 0.00 34.32 4.52
160 161 2.755103 GTTTCGATGAGGGAAAGGCAAT 59.245 45.455 0.00 0.00 34.32 3.56
161 162 2.042686 TCGATGAGGGAAAGGCAATG 57.957 50.000 0.00 0.00 0.00 2.82
162 163 1.559219 TCGATGAGGGAAAGGCAATGA 59.441 47.619 0.00 0.00 0.00 2.57
163 164 1.672881 CGATGAGGGAAAGGCAATGAC 59.327 52.381 0.00 0.00 0.00 3.06
164 165 2.726821 GATGAGGGAAAGGCAATGACA 58.273 47.619 0.00 0.00 0.00 3.58
165 166 2.673775 TGAGGGAAAGGCAATGACAA 57.326 45.000 0.00 0.00 0.00 3.18
168 169 0.243636 GGGAAAGGCAATGACAACGG 59.756 55.000 0.00 0.00 0.00 4.44
170 171 0.729140 GAAAGGCAATGACAACGGCG 60.729 55.000 4.80 4.80 0.00 6.46
171 172 2.747507 AAAGGCAATGACAACGGCGC 62.748 55.000 6.90 0.00 0.00 6.53
189 190 2.451167 CGCCTTCAGCTCGCTCAAG 61.451 63.158 0.00 0.00 40.39 3.02
190 191 1.375268 GCCTTCAGCTCGCTCAAGT 60.375 57.895 1.97 0.00 38.99 3.16
192 193 0.037882 CCTTCAGCTCGCTCAAGTGA 60.038 55.000 1.97 0.00 0.00 3.41
193 194 1.405256 CCTTCAGCTCGCTCAAGTGAT 60.405 52.381 1.97 0.00 33.67 3.06
194 195 2.344950 CTTCAGCTCGCTCAAGTGATT 58.655 47.619 0.00 0.00 33.67 2.57
195 196 1.718396 TCAGCTCGCTCAAGTGATTG 58.282 50.000 0.00 0.00 33.67 2.67
196 197 1.001293 TCAGCTCGCTCAAGTGATTGT 59.999 47.619 0.00 0.00 33.67 2.71
197 198 2.231235 TCAGCTCGCTCAAGTGATTGTA 59.769 45.455 0.00 0.00 33.67 2.41
198 199 2.602211 CAGCTCGCTCAAGTGATTGTAG 59.398 50.000 0.00 0.00 33.67 2.74
199 200 2.232452 AGCTCGCTCAAGTGATTGTAGT 59.768 45.455 0.00 0.00 33.67 2.73
202 203 2.228103 TCGCTCAAGTGATTGTAGTCGT 59.772 45.455 0.00 0.00 0.00 4.34
203 204 2.594654 CGCTCAAGTGATTGTAGTCGTC 59.405 50.000 0.00 0.00 0.00 4.20
204 205 2.594654 GCTCAAGTGATTGTAGTCGTCG 59.405 50.000 0.00 0.00 0.00 5.12
205 206 2.592194 TCAAGTGATTGTAGTCGTCGC 58.408 47.619 0.00 0.00 0.00 5.19
206 207 2.228103 TCAAGTGATTGTAGTCGTCGCT 59.772 45.455 0.00 0.00 34.43 4.93
207 208 3.437741 TCAAGTGATTGTAGTCGTCGCTA 59.562 43.478 0.00 0.00 32.81 4.26
208 209 3.677190 AGTGATTGTAGTCGTCGCTAG 57.323 47.619 0.00 0.00 31.46 3.42
209 210 2.355132 AGTGATTGTAGTCGTCGCTAGG 59.645 50.000 0.00 0.00 31.46 3.02
210 211 2.097142 GTGATTGTAGTCGTCGCTAGGT 59.903 50.000 0.00 0.00 0.00 3.08
211 212 2.096980 TGATTGTAGTCGTCGCTAGGTG 59.903 50.000 0.00 0.00 0.00 4.00
212 213 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
213 214 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
214 215 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
215 216 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
216 217 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
217 218 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
218 219 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
219 220 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
220 221 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
221 222 0.745845 TCGCTAGGTGGTCTACGGAC 60.746 60.000 0.00 0.00 41.43 4.79
222 223 1.028330 CGCTAGGTGGTCTACGGACA 61.028 60.000 0.00 0.00 43.77 4.02
223 224 1.400737 GCTAGGTGGTCTACGGACAT 58.599 55.000 0.00 0.00 43.77 3.06
224 225 1.067212 GCTAGGTGGTCTACGGACATG 59.933 57.143 0.00 0.00 43.77 3.21
225 226 1.681793 CTAGGTGGTCTACGGACATGG 59.318 57.143 0.00 0.00 43.77 3.66
226 227 0.040646 AGGTGGTCTACGGACATGGA 59.959 55.000 0.00 0.00 43.77 3.41
227 228 1.120530 GGTGGTCTACGGACATGGAT 58.879 55.000 0.00 0.00 43.77 3.41
228 229 1.202533 GGTGGTCTACGGACATGGATG 60.203 57.143 0.00 0.00 43.77 3.51
229 230 1.480954 GTGGTCTACGGACATGGATGT 59.519 52.381 0.00 0.00 43.77 3.06
230 231 2.691526 GTGGTCTACGGACATGGATGTA 59.308 50.000 0.00 0.00 43.77 2.29
231 232 3.131577 GTGGTCTACGGACATGGATGTAA 59.868 47.826 0.00 0.00 43.77 2.41
232 233 3.964688 TGGTCTACGGACATGGATGTAAT 59.035 43.478 0.00 0.00 43.77 1.89
233 234 4.407621 TGGTCTACGGACATGGATGTAATT 59.592 41.667 0.00 0.00 43.77 1.40
234 235 5.104693 TGGTCTACGGACATGGATGTAATTT 60.105 40.000 0.00 0.00 43.77 1.82
235 236 5.820947 GGTCTACGGACATGGATGTAATTTT 59.179 40.000 0.00 0.00 43.77 1.82
236 237 6.317893 GGTCTACGGACATGGATGTAATTTTT 59.682 38.462 0.00 0.00 43.77 1.94
237 238 7.496591 GGTCTACGGACATGGATGTAATTTTTA 59.503 37.037 0.00 0.00 43.77 1.52
238 239 9.052759 GTCTACGGACATGGATGTAATTTTTAT 57.947 33.333 0.00 0.00 41.95 1.40
239 240 9.621629 TCTACGGACATGGATGTAATTTTTATT 57.378 29.630 0.00 0.00 41.95 1.40
242 243 8.966868 ACGGACATGGATGTAATTTTTATTTCT 58.033 29.630 0.00 0.00 41.95 2.52
243 244 9.236691 CGGACATGGATGTAATTTTTATTTCTG 57.763 33.333 0.00 0.00 41.95 3.02
319 320 3.804036 TCGAAAGTCAAGAAGGCAGAAA 58.196 40.909 0.00 0.00 0.00 2.52
379 380 1.342074 TTCTGTCCACCTGACTCCAG 58.658 55.000 0.00 0.00 44.75 3.86
393 399 1.546476 ACTCCAGTCAAGTCCACGATC 59.454 52.381 0.00 0.00 0.00 3.69
423 429 2.359975 CAACAACTCCTCGCCCCC 60.360 66.667 0.00 0.00 0.00 5.40
424 430 2.852075 AACAACTCCTCGCCCCCA 60.852 61.111 0.00 0.00 0.00 4.96
425 431 2.231380 AACAACTCCTCGCCCCCAT 61.231 57.895 0.00 0.00 0.00 4.00
426 432 2.124570 CAACTCCTCGCCCCCATG 60.125 66.667 0.00 0.00 0.00 3.66
427 433 2.610859 AACTCCTCGCCCCCATGT 60.611 61.111 0.00 0.00 0.00 3.21
444 451 3.752747 CCATGTCATGTTTCTAGCACACA 59.247 43.478 11.84 0.00 0.00 3.72
460 467 0.324614 CACACACTGCCACTATCCCA 59.675 55.000 0.00 0.00 0.00 4.37
461 468 0.615331 ACACACTGCCACTATCCCAG 59.385 55.000 0.00 0.00 0.00 4.45
462 469 0.615331 CACACTGCCACTATCCCAGT 59.385 55.000 0.00 0.00 40.22 4.00
463 470 1.831106 CACACTGCCACTATCCCAGTA 59.169 52.381 0.00 0.00 37.70 2.74
464 471 2.111384 ACACTGCCACTATCCCAGTAG 58.889 52.381 0.00 0.00 37.70 2.57
465 472 1.414181 CACTGCCACTATCCCAGTAGG 59.586 57.143 0.00 0.00 37.70 3.18
466 473 0.394565 CTGCCACTATCCCAGTAGGC 59.605 60.000 0.00 0.00 44.84 3.93
493 500 3.181520 GCTATTAAACCAGCTCACACACG 60.182 47.826 0.00 0.00 34.86 4.49
494 501 1.588674 TTAAACCAGCTCACACACGG 58.411 50.000 0.00 0.00 0.00 4.94
496 503 2.608970 AAACCAGCTCACACACGGCT 62.609 55.000 0.00 0.00 36.70 5.52
497 504 1.754380 AACCAGCTCACACACGGCTA 61.754 55.000 0.00 0.00 34.71 3.93
499 506 0.602638 CCAGCTCACACACGGCTAAA 60.603 55.000 0.00 0.00 34.71 1.85
502 509 1.574702 GCTCACACACGGCTAAACCC 61.575 60.000 0.00 0.00 33.26 4.11
503 510 0.034896 CTCACACACGGCTAAACCCT 59.965 55.000 0.00 0.00 33.26 4.34
507 514 2.224784 CACACACGGCTAAACCCTAAAC 59.775 50.000 0.00 0.00 33.26 2.01
508 515 1.808343 CACACGGCTAAACCCTAAACC 59.192 52.381 0.00 0.00 33.26 3.27
509 516 1.271543 ACACGGCTAAACCCTAAACCC 60.272 52.381 0.00 0.00 33.26 4.11
510 517 1.003928 CACGGCTAAACCCTAAACCCT 59.996 52.381 0.00 0.00 33.26 4.34
511 518 2.236893 CACGGCTAAACCCTAAACCCTA 59.763 50.000 0.00 0.00 33.26 3.53
512 519 2.912295 ACGGCTAAACCCTAAACCCTAA 59.088 45.455 0.00 0.00 33.26 2.69
514 521 3.691118 CGGCTAAACCCTAAACCCTAAAC 59.309 47.826 0.00 0.00 33.26 2.01
515 522 4.019174 GGCTAAACCCTAAACCCTAAACC 58.981 47.826 0.00 0.00 0.00 3.27
516 523 4.019174 GCTAAACCCTAAACCCTAAACCC 58.981 47.826 0.00 0.00 0.00 4.11
517 524 4.264083 GCTAAACCCTAAACCCTAAACCCT 60.264 45.833 0.00 0.00 0.00 4.34
518 525 5.044919 GCTAAACCCTAAACCCTAAACCCTA 60.045 44.000 0.00 0.00 0.00 3.53
520 527 5.946644 AACCCTAAACCCTAAACCCTAAA 57.053 39.130 0.00 0.00 0.00 1.85
521 528 5.261040 ACCCTAAACCCTAAACCCTAAAC 57.739 43.478 0.00 0.00 0.00 2.01
522 529 4.044571 ACCCTAAACCCTAAACCCTAAACC 59.955 45.833 0.00 0.00 0.00 3.27
524 531 4.293102 CCTAAACCCTAAACCCTAAACCCT 59.707 45.833 0.00 0.00 0.00 4.34
525 532 5.492162 CCTAAACCCTAAACCCTAAACCCTA 59.508 44.000 0.00 0.00 0.00 3.53
529 536 3.526430 CCCTAAACCCTAAACCCTAAGCT 59.474 47.826 0.00 0.00 0.00 3.74
530 537 4.384978 CCCTAAACCCTAAACCCTAAGCTC 60.385 50.000 0.00 0.00 0.00 4.09
532 539 2.354261 ACCCTAAACCCTAAGCTCCA 57.646 50.000 0.00 0.00 0.00 3.86
535 542 1.913419 CCTAAACCCTAAGCTCCACCA 59.087 52.381 0.00 0.00 0.00 4.17
536 543 2.092914 CCTAAACCCTAAGCTCCACCAG 60.093 54.545 0.00 0.00 0.00 4.00
545 552 2.281970 CTCCACCAGCAGCAGCAA 60.282 61.111 3.17 0.00 45.49 3.91
546 553 2.281970 TCCACCAGCAGCAGCAAG 60.282 61.111 3.17 0.00 45.49 4.01
548 555 2.333417 CCACCAGCAGCAGCAAGAG 61.333 63.158 3.17 0.00 45.49 2.85
549 556 2.672307 ACCAGCAGCAGCAAGAGC 60.672 61.111 3.17 0.00 45.49 4.09
550 557 2.671963 CCAGCAGCAGCAAGAGCA 60.672 61.111 3.17 0.00 45.49 4.26
552 559 3.048475 AGCAGCAGCAAGAGCACG 61.048 61.111 3.17 0.00 45.49 5.34
553 560 3.046087 GCAGCAGCAAGAGCACGA 61.046 61.111 0.00 0.00 45.49 4.35
554 561 3.024782 GCAGCAGCAAGAGCACGAG 62.025 63.158 0.00 0.00 45.49 4.18
555 562 2.047465 AGCAGCAAGAGCACGAGG 60.047 61.111 0.00 0.00 45.49 4.63
556 563 3.797546 GCAGCAAGAGCACGAGGC 61.798 66.667 0.00 0.00 45.49 4.70
1047 1725 4.933064 CCGCTCGATGGACTCCGC 62.933 72.222 0.00 0.00 0.00 5.54
1149 1827 2.504681 GCCGGCAATGCTTCGTTG 60.505 61.111 24.80 0.00 33.92 4.10
1158 1836 1.148310 ATGCTTCGTTGGTGTTCTCG 58.852 50.000 0.00 0.00 0.00 4.04
1211 1901 2.126502 GCCACCGCGAACAAATGG 60.127 61.111 8.23 6.40 0.00 3.16
1220 1910 2.225491 CGCGAACAAATGGAAAGAAGGA 59.775 45.455 0.00 0.00 0.00 3.36
1373 2066 4.394712 GGTGGTGAGGTGCCGGAG 62.395 72.222 5.05 0.00 0.00 4.63
1422 2115 1.973812 GAAGAAGGTGCAGTGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
1755 4170 1.303309 CCAACATCCTTCCGCTCATC 58.697 55.000 0.00 0.00 0.00 2.92
1796 4211 6.366061 GGTGAGTGCAAATTTACTTTGGATTC 59.634 38.462 5.48 5.48 45.38 2.52
1797 4212 7.147976 GTGAGTGCAAATTTACTTTGGATTCT 58.852 34.615 11.44 0.00 45.79 2.40
1798 4213 7.653311 GTGAGTGCAAATTTACTTTGGATTCTT 59.347 33.333 11.44 0.00 45.79 2.52
1799 4214 8.203485 TGAGTGCAAATTTACTTTGGATTCTTT 58.797 29.630 11.44 0.00 45.79 2.52
1839 4254 1.272490 CAGTTAGGTTCGGTGAGCAGA 59.728 52.381 0.00 0.00 0.00 4.26
1840 4255 1.546476 AGTTAGGTTCGGTGAGCAGAG 59.454 52.381 0.00 0.00 0.00 3.35
1853 4293 3.076621 TGAGCAGAGCACCATAAAAGTG 58.923 45.455 0.00 0.00 38.30 3.16
1873 4313 4.803613 AGTGTTGGCTTTTGAAATTCGAAC 59.196 37.500 0.00 0.00 0.00 3.95
1874 4314 3.794028 TGTTGGCTTTTGAAATTCGAACG 59.206 39.130 0.00 0.00 0.00 3.95
1884 4324 2.265073 AATTCGAACGCCGGCCATTG 62.265 55.000 23.46 14.00 39.14 2.82
1993 4433 3.998672 GGCCGGACTTGGACGACA 61.999 66.667 5.05 0.00 0.00 4.35
2103 4543 3.052082 CTGGCGTTCCTGCACCAG 61.052 66.667 4.56 4.56 43.45 4.00
2190 4630 3.551407 GACCTGGAGCCCCGGATC 61.551 72.222 0.73 0.00 41.53 3.36
2298 4741 4.100084 CTGATGACGGGGCAGGCA 62.100 66.667 0.00 0.00 0.00 4.75
2511 4954 4.162690 AAGGACATCCGGCCTCGC 62.163 66.667 0.00 0.00 42.08 5.03
2584 5032 3.268603 TGTGAACTGCGTGCGTGG 61.269 61.111 0.00 0.00 0.00 4.94
2585 5033 4.666532 GTGAACTGCGTGCGTGGC 62.667 66.667 0.00 0.00 0.00 5.01
2609 5069 1.379443 CAGCCACCATCACATGCCT 60.379 57.895 0.00 0.00 0.00 4.75
2610 5070 1.077212 AGCCACCATCACATGCCTC 60.077 57.895 0.00 0.00 0.00 4.70
2626 5086 3.978723 CTCCGCTCGAGTGCACCAG 62.979 68.421 20.61 8.11 33.51 4.00
2648 5108 1.203994 ACCATAGTACACGTCACAGCC 59.796 52.381 0.00 0.00 0.00 4.85
2659 5119 2.357952 ACGTCACAGCCTTTCCTTTTTC 59.642 45.455 0.00 0.00 0.00 2.29
2660 5120 2.618709 CGTCACAGCCTTTCCTTTTTCT 59.381 45.455 0.00 0.00 0.00 2.52
2661 5121 3.813166 CGTCACAGCCTTTCCTTTTTCTA 59.187 43.478 0.00 0.00 0.00 2.10
2662 5122 4.319549 CGTCACAGCCTTTCCTTTTTCTAC 60.320 45.833 0.00 0.00 0.00 2.59
2663 5123 4.822350 GTCACAGCCTTTCCTTTTTCTACT 59.178 41.667 0.00 0.00 0.00 2.57
2664 5124 4.821805 TCACAGCCTTTCCTTTTTCTACTG 59.178 41.667 0.00 0.00 0.00 2.74
2665 5125 4.580580 CACAGCCTTTCCTTTTTCTACTGT 59.419 41.667 0.00 0.00 36.34 3.55
2666 5126 5.763204 CACAGCCTTTCCTTTTTCTACTGTA 59.237 40.000 0.00 0.00 34.30 2.74
2667 5127 6.431234 CACAGCCTTTCCTTTTTCTACTGTAT 59.569 38.462 0.00 0.00 34.30 2.29
2668 5128 6.431234 ACAGCCTTTCCTTTTTCTACTGTATG 59.569 38.462 0.00 0.00 34.30 2.39
2669 5129 6.431234 CAGCCTTTCCTTTTTCTACTGTATGT 59.569 38.462 0.00 0.00 0.00 2.29
2672 5132 8.398665 GCCTTTCCTTTTTCTACTGTATGTATG 58.601 37.037 0.00 0.00 0.00 2.39
2678 5138 7.095607 CCTTTTTCTACTGTATGTATGATCGGC 60.096 40.741 0.00 0.00 0.00 5.54
2703 5163 0.247934 TCGTACGATGTGCAGTAGCG 60.248 55.000 15.28 6.96 46.23 4.26
2707 5167 2.167219 CGATGTGCAGTAGCGGTGG 61.167 63.158 0.00 0.00 46.23 4.61
2712 5172 3.264897 GCAGTAGCGGTGGCGATG 61.265 66.667 0.00 0.00 46.35 3.84
2730 5198 4.620332 GCGATGGGGAACATTTGATTTCAA 60.620 41.667 0.00 0.00 40.72 2.69
2750 5296 7.887996 TTCAAACCATTTCTCACATAAATGC 57.112 32.000 0.00 0.00 41.11 3.56
2778 5324 3.665848 CGCCATTGAATTGCAAAAGCTTG 60.666 43.478 1.71 0.00 40.48 4.01
2799 5345 3.181367 CGCAGGAGCATGAACACC 58.819 61.111 0.00 0.00 42.27 4.16
2800 5346 2.743752 CGCAGGAGCATGAACACCG 61.744 63.158 0.00 0.00 42.27 4.94
2801 5347 1.672356 GCAGGAGCATGAACACCGT 60.672 57.895 0.00 0.00 41.58 4.83
2802 5348 0.391130 GCAGGAGCATGAACACCGTA 60.391 55.000 0.00 0.00 41.58 4.02
2803 5349 1.943968 GCAGGAGCATGAACACCGTAA 60.944 52.381 0.00 0.00 41.58 3.18
2804 5350 2.422597 CAGGAGCATGAACACCGTAAA 58.577 47.619 0.00 0.00 0.00 2.01
2805 5351 3.009723 CAGGAGCATGAACACCGTAAAT 58.990 45.455 0.00 0.00 0.00 1.40
2806 5352 3.009723 AGGAGCATGAACACCGTAAATG 58.990 45.455 0.00 0.00 0.00 2.32
2807 5353 2.477863 GGAGCATGAACACCGTAAATGC 60.478 50.000 0.00 0.00 43.10 3.56
2808 5354 1.130373 AGCATGAACACCGTAAATGCG 59.870 47.619 0.00 0.00 46.40 4.73
2809 5355 1.135803 GCATGAACACCGTAAATGCGT 60.136 47.619 0.00 0.00 34.84 5.24
2810 5356 2.667171 GCATGAACACCGTAAATGCGTT 60.667 45.455 0.00 0.00 34.84 4.84
2811 5357 2.953640 TGAACACCGTAAATGCGTTC 57.046 45.000 0.00 0.00 37.16 3.95
2812 5358 1.532007 TGAACACCGTAAATGCGTTCC 59.468 47.619 0.00 0.00 36.07 3.62
2813 5359 0.876399 AACACCGTAAATGCGTTCCC 59.124 50.000 0.00 0.00 0.00 3.97
2814 5360 1.293267 ACACCGTAAATGCGTTCCCG 61.293 55.000 0.00 0.00 37.07 5.14
2825 5371 3.327464 CGTTCCCGCCAAAATCATG 57.673 52.632 0.00 0.00 0.00 3.07
2826 5372 0.179140 CGTTCCCGCCAAAATCATGG 60.179 55.000 0.00 0.00 43.70 3.66
2827 5373 1.181786 GTTCCCGCCAAAATCATGGA 58.818 50.000 0.00 0.00 43.54 3.41
2828 5374 1.134946 GTTCCCGCCAAAATCATGGAG 59.865 52.381 0.00 0.00 43.54 3.86
2829 5375 0.623194 TCCCGCCAAAATCATGGAGA 59.377 50.000 0.00 0.00 42.25 3.71
2830 5376 1.005332 TCCCGCCAAAATCATGGAGAA 59.995 47.619 0.00 0.00 42.25 2.87
2831 5377 1.824230 CCCGCCAAAATCATGGAGAAA 59.176 47.619 0.00 0.00 42.25 2.52
2832 5378 2.233431 CCCGCCAAAATCATGGAGAAAA 59.767 45.455 0.00 0.00 42.25 2.29
2833 5379 3.514645 CCGCCAAAATCATGGAGAAAAG 58.485 45.455 0.00 0.00 42.25 2.27
2834 5380 3.193267 CCGCCAAAATCATGGAGAAAAGA 59.807 43.478 0.00 0.00 42.25 2.52
2835 5381 4.321899 CCGCCAAAATCATGGAGAAAAGAA 60.322 41.667 0.00 0.00 42.25 2.52
2836 5382 5.229423 CGCCAAAATCATGGAGAAAAGAAA 58.771 37.500 0.00 0.00 42.25 2.52
2837 5383 5.695816 CGCCAAAATCATGGAGAAAAGAAAA 59.304 36.000 0.00 0.00 42.25 2.29
2838 5384 6.346838 CGCCAAAATCATGGAGAAAAGAAAAC 60.347 38.462 0.00 0.00 42.25 2.43
2839 5385 6.482973 GCCAAAATCATGGAGAAAAGAAAACA 59.517 34.615 0.00 0.00 43.54 2.83
2840 5386 7.173735 GCCAAAATCATGGAGAAAAGAAAACAT 59.826 33.333 0.00 0.00 43.54 2.71
2841 5387 8.715088 CCAAAATCATGGAGAAAAGAAAACATC 58.285 33.333 0.00 0.00 43.54 3.06
2848 5394 5.534654 TGGAGAAAAGAAAACATCCGACAAT 59.465 36.000 0.00 0.00 0.00 2.71
2869 5415 3.948735 CCAACGGGTGGTATCACTT 57.051 52.632 3.20 0.00 43.20 3.16
2871 5417 2.901249 CCAACGGGTGGTATCACTTAG 58.099 52.381 3.20 0.53 43.20 2.18
2872 5418 2.235402 CCAACGGGTGGTATCACTTAGT 59.765 50.000 3.20 1.16 43.20 2.24
2888 5434 6.464222 TCACTTAGTATCCAAGTTCCAACAG 58.536 40.000 0.00 0.00 33.99 3.16
2906 5452 5.181748 CAACAGGATTAGGAGGAACAAGAG 58.818 45.833 0.00 0.00 0.00 2.85
2910 5456 4.719273 AGGATTAGGAGGAACAAGAGAAGG 59.281 45.833 0.00 0.00 0.00 3.46
2916 5462 3.006247 GAGGAACAAGAGAAGGTGCATC 58.994 50.000 0.00 0.00 0.00 3.91
2920 5466 2.960819 ACAAGAGAAGGTGCATCGTAC 58.039 47.619 0.00 0.00 0.00 3.67
2922 5468 2.926200 CAAGAGAAGGTGCATCGTACTG 59.074 50.000 0.00 0.00 0.00 2.74
2924 5470 0.898320 AGAAGGTGCATCGTACTGCT 59.102 50.000 8.39 0.00 42.75 4.24
2925 5471 2.099263 GAGAAGGTGCATCGTACTGCTA 59.901 50.000 8.39 0.00 42.75 3.49
2926 5472 2.159226 AGAAGGTGCATCGTACTGCTAC 60.159 50.000 8.39 5.31 42.75 3.58
2964 5513 0.180642 TGGCGTGGTACAAAAGGTGA 59.819 50.000 0.00 0.00 44.16 4.02
2965 5514 0.872388 GGCGTGGTACAAAAGGTGAG 59.128 55.000 0.00 0.00 44.16 3.51
2966 5515 1.541670 GGCGTGGTACAAAAGGTGAGA 60.542 52.381 0.00 0.00 44.16 3.27
2967 5516 2.423577 GCGTGGTACAAAAGGTGAGAT 58.576 47.619 0.00 0.00 44.16 2.75
2968 5517 2.415512 GCGTGGTACAAAAGGTGAGATC 59.584 50.000 0.00 0.00 44.16 2.75
2969 5518 2.666508 CGTGGTACAAAAGGTGAGATCG 59.333 50.000 0.00 0.00 44.16 3.69
3102 5659 6.346518 GGAATGCGAGGTTGTTAAAATGTTTG 60.347 38.462 0.00 0.00 0.00 2.93
3105 5662 6.561614 TGCGAGGTTGTTAAAATGTTTGTAA 58.438 32.000 0.00 0.00 0.00 2.41
3123 5680 1.494960 AAGGCTGGGAGTCAGAGATC 58.505 55.000 0.00 0.00 46.18 2.75
3185 5784 3.249805 TGAGGCCACACCACACAT 58.750 55.556 5.01 0.00 43.14 3.21
3186 5785 1.228215 TGAGGCCACACCACACATG 60.228 57.895 5.01 0.00 43.14 3.21
3219 5818 2.629617 ACAAATGGTCAAGAAAGGGCTG 59.370 45.455 0.00 0.00 0.00 4.85
3253 5852 2.124570 CGCTGGATCCTTGTGGGG 60.125 66.667 14.23 3.04 35.33 4.96
3285 5899 0.247736 GGTCAGCGATGAGGTCTTGT 59.752 55.000 2.20 0.00 0.00 3.16
3293 5914 1.200948 GATGAGGTCTTGTTGGCTTGC 59.799 52.381 0.00 0.00 0.00 4.01
3338 5959 1.083806 TGGCGATTCTGTCACGATGC 61.084 55.000 0.00 0.00 0.00 3.91
3360 5981 1.273098 GGTGTGGGTCTAGGAGAGGAA 60.273 57.143 0.00 0.00 0.00 3.36
3446 6067 7.651304 TGACTTCTCGGTTATTGTAACGTAAAA 59.349 33.333 0.00 0.00 0.00 1.52
3459 6080 7.689953 TGTAACGTAAAAGTCACTTCTTCTC 57.310 36.000 0.00 0.00 0.00 2.87
3460 6081 5.885020 AACGTAAAAGTCACTTCTTCTCG 57.115 39.130 0.00 0.00 0.00 4.04
3462 6083 5.585390 ACGTAAAAGTCACTTCTTCTCGAA 58.415 37.500 0.00 0.00 0.00 3.71
3489 6110 8.438676 AAATAAGTCGAAGAGTATGGAAATGG 57.561 34.615 0.00 0.00 40.67 3.16
3490 6111 5.677319 AAGTCGAAGAGTATGGAAATGGA 57.323 39.130 0.00 0.00 40.67 3.41
3491 6112 5.269505 AGTCGAAGAGTATGGAAATGGAG 57.730 43.478 0.00 0.00 39.14 3.86
3492 6113 3.804873 GTCGAAGAGTATGGAAATGGAGC 59.195 47.826 0.00 0.00 36.95 4.70
3493 6114 3.450817 TCGAAGAGTATGGAAATGGAGCA 59.549 43.478 0.00 0.00 0.00 4.26
3494 6115 4.101585 TCGAAGAGTATGGAAATGGAGCAT 59.898 41.667 0.00 0.00 0.00 3.79
3495 6116 4.818546 CGAAGAGTATGGAAATGGAGCATT 59.181 41.667 0.00 0.00 35.39 3.56
3496 6117 5.277683 CGAAGAGTATGGAAATGGAGCATTG 60.278 44.000 0.00 0.00 34.04 2.82
3497 6118 3.887716 AGAGTATGGAAATGGAGCATTGC 59.112 43.478 0.00 0.00 34.04 3.56
3498 6119 3.887716 GAGTATGGAAATGGAGCATTGCT 59.112 43.478 11.79 11.79 43.88 3.91
3499 6120 5.052693 AGTATGGAAATGGAGCATTGCTA 57.947 39.130 11.96 0.00 39.88 3.49
3500 6121 4.823989 AGTATGGAAATGGAGCATTGCTAC 59.176 41.667 14.27 14.27 39.88 3.58
3501 6122 2.378038 TGGAAATGGAGCATTGCTACC 58.622 47.619 18.21 16.86 39.07 3.18
3502 6123 1.334869 GGAAATGGAGCATTGCTACCG 59.665 52.381 18.21 0.00 39.07 4.02
3503 6124 2.017049 GAAATGGAGCATTGCTACCGT 58.983 47.619 18.21 15.18 39.07 4.83
3504 6125 3.202906 GAAATGGAGCATTGCTACCGTA 58.797 45.455 18.21 0.00 39.07 4.02
3505 6126 2.533266 ATGGAGCATTGCTACCGTAG 57.467 50.000 18.21 0.76 39.07 3.51
3506 6127 1.480789 TGGAGCATTGCTACCGTAGA 58.519 50.000 18.21 0.00 39.07 2.59
3507 6128 1.828595 TGGAGCATTGCTACCGTAGAA 59.171 47.619 18.21 0.00 39.07 2.10
3508 6129 2.202566 GGAGCATTGCTACCGTAGAAC 58.797 52.381 11.96 0.00 39.88 3.01
3509 6130 2.202566 GAGCATTGCTACCGTAGAACC 58.797 52.381 11.96 0.00 39.88 3.62
3510 6131 1.553248 AGCATTGCTACCGTAGAACCA 59.447 47.619 10.00 0.00 36.99 3.67
3511 6132 2.170607 AGCATTGCTACCGTAGAACCAT 59.829 45.455 10.00 0.00 36.99 3.55
3512 6133 2.943033 GCATTGCTACCGTAGAACCATT 59.057 45.455 9.88 0.00 0.00 3.16
3513 6134 3.242739 GCATTGCTACCGTAGAACCATTG 60.243 47.826 9.88 6.11 0.00 2.82
3514 6135 3.688694 TTGCTACCGTAGAACCATTGT 57.311 42.857 9.88 0.00 0.00 2.71
3515 6136 3.688694 TGCTACCGTAGAACCATTGTT 57.311 42.857 9.88 0.00 37.42 2.83
3524 6145 1.435577 GAACCATTGTTCTACGGCGT 58.564 50.000 19.64 19.64 46.03 5.68
3525 6146 1.802365 GAACCATTGTTCTACGGCGTT 59.198 47.619 21.24 1.91 46.03 4.84
3526 6147 1.153353 ACCATTGTTCTACGGCGTTG 58.847 50.000 21.24 17.86 0.00 4.10
3527 6148 0.446222 CCATTGTTCTACGGCGTTGG 59.554 55.000 21.24 14.55 0.00 3.77
3528 6149 0.446222 CATTGTTCTACGGCGTTGGG 59.554 55.000 21.24 9.49 0.00 4.12
3529 6150 0.035739 ATTGTTCTACGGCGTTGGGT 59.964 50.000 21.24 0.00 0.00 4.51
3530 6151 0.179051 TTGTTCTACGGCGTTGGGTT 60.179 50.000 21.24 0.00 0.00 4.11
3531 6152 0.678395 TGTTCTACGGCGTTGGGTTA 59.322 50.000 21.24 0.00 0.00 2.85
3532 6153 1.069823 TGTTCTACGGCGTTGGGTTAA 59.930 47.619 21.24 3.27 0.00 2.01
3533 6154 2.142319 GTTCTACGGCGTTGGGTTAAA 58.858 47.619 21.24 2.85 0.00 1.52
3534 6155 2.540265 TCTACGGCGTTGGGTTAAAA 57.460 45.000 21.24 0.00 0.00 1.52
3535 6156 2.843701 TCTACGGCGTTGGGTTAAAAA 58.156 42.857 21.24 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.306141 AATGGTGCGGGAGGAGAGA 60.306 57.895 0.00 0.00 0.00 3.10
61 62 2.203509 CTCGGGGGATAGGAGCGT 60.204 66.667 0.00 0.00 0.00 5.07
103 104 2.594303 CGGTGCCCAAGACAGCAA 60.594 61.111 0.00 0.00 41.48 3.91
133 134 3.762407 TTCCCTCATCGAAACTGAACA 57.238 42.857 0.00 0.00 0.00 3.18
134 135 3.437049 CCTTTCCCTCATCGAAACTGAAC 59.563 47.826 0.00 0.00 0.00 3.18
137 138 1.740025 GCCTTTCCCTCATCGAAACTG 59.260 52.381 0.00 0.00 0.00 3.16
138 139 1.351017 TGCCTTTCCCTCATCGAAACT 59.649 47.619 0.00 0.00 0.00 2.66
139 140 1.821216 TGCCTTTCCCTCATCGAAAC 58.179 50.000 0.00 0.00 0.00 2.78
140 141 2.577606 TTGCCTTTCCCTCATCGAAA 57.422 45.000 0.00 0.00 0.00 3.46
142 143 1.559219 TCATTGCCTTTCCCTCATCGA 59.441 47.619 0.00 0.00 0.00 3.59
143 144 1.672881 GTCATTGCCTTTCCCTCATCG 59.327 52.381 0.00 0.00 0.00 3.84
145 146 2.827921 GTTGTCATTGCCTTTCCCTCAT 59.172 45.455 0.00 0.00 0.00 2.90
147 148 1.200020 CGTTGTCATTGCCTTTCCCTC 59.800 52.381 0.00 0.00 0.00 4.30
148 149 1.247567 CGTTGTCATTGCCTTTCCCT 58.752 50.000 0.00 0.00 0.00 4.20
149 150 0.243636 CCGTTGTCATTGCCTTTCCC 59.756 55.000 0.00 0.00 0.00 3.97
150 151 0.388520 GCCGTTGTCATTGCCTTTCC 60.389 55.000 0.00 0.00 0.00 3.13
152 153 1.285641 CGCCGTTGTCATTGCCTTT 59.714 52.632 0.00 0.00 0.00 3.11
153 154 2.953821 CGCCGTTGTCATTGCCTT 59.046 55.556 0.00 0.00 0.00 4.35
154 155 3.737172 GCGCCGTTGTCATTGCCT 61.737 61.111 0.00 0.00 0.00 4.75
172 173 1.375268 ACTTGAGCGAGCTGAAGGC 60.375 57.895 23.78 2.04 40.69 4.35
173 174 0.037882 TCACTTGAGCGAGCTGAAGG 60.038 55.000 23.78 14.71 40.69 3.46
175 176 2.071540 CAATCACTTGAGCGAGCTGAA 58.928 47.619 0.84 0.00 34.04 3.02
176 177 1.001293 ACAATCACTTGAGCGAGCTGA 59.999 47.619 0.84 0.00 36.20 4.26
177 178 1.436600 ACAATCACTTGAGCGAGCTG 58.563 50.000 0.84 0.00 36.20 4.24
178 179 2.232452 ACTACAATCACTTGAGCGAGCT 59.768 45.455 0.00 0.00 36.20 4.09
179 180 2.600867 GACTACAATCACTTGAGCGAGC 59.399 50.000 0.00 0.00 36.20 5.03
180 181 2.848887 CGACTACAATCACTTGAGCGAG 59.151 50.000 0.00 0.00 36.20 5.03
181 182 2.228103 ACGACTACAATCACTTGAGCGA 59.772 45.455 0.00 0.00 36.20 4.93
182 183 2.594654 GACGACTACAATCACTTGAGCG 59.405 50.000 0.00 0.00 36.20 5.03
183 184 2.594654 CGACGACTACAATCACTTGAGC 59.405 50.000 0.00 0.00 36.20 4.26
187 188 3.181499 CCTAGCGACGACTACAATCACTT 60.181 47.826 0.00 0.00 0.00 3.16
189 190 2.097142 ACCTAGCGACGACTACAATCAC 59.903 50.000 0.00 0.00 0.00 3.06
190 191 2.096980 CACCTAGCGACGACTACAATCA 59.903 50.000 0.00 0.00 0.00 2.57
192 193 1.404391 CCACCTAGCGACGACTACAAT 59.596 52.381 0.00 0.00 0.00 2.71
193 194 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
194 195 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
195 196 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
196 197 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
197 198 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
198 199 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
199 200 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
202 203 0.745845 GTCCGTAGACCACCTAGCGA 60.746 60.000 0.00 0.00 37.00 4.93
203 204 1.028330 TGTCCGTAGACCACCTAGCG 61.028 60.000 0.00 0.00 42.81 4.26
204 205 1.067212 CATGTCCGTAGACCACCTAGC 59.933 57.143 0.00 0.00 42.81 3.42
205 206 1.681793 CCATGTCCGTAGACCACCTAG 59.318 57.143 0.00 0.00 42.81 3.02
206 207 1.285667 TCCATGTCCGTAGACCACCTA 59.714 52.381 0.00 0.00 42.81 3.08
207 208 0.040646 TCCATGTCCGTAGACCACCT 59.959 55.000 0.00 0.00 42.81 4.00
208 209 1.120530 ATCCATGTCCGTAGACCACC 58.879 55.000 0.00 0.00 42.81 4.61
209 210 1.480954 ACATCCATGTCCGTAGACCAC 59.519 52.381 0.00 0.00 42.81 4.16
210 211 1.860641 ACATCCATGTCCGTAGACCA 58.139 50.000 0.00 0.00 42.81 4.02
211 212 4.602340 ATTACATCCATGTCCGTAGACC 57.398 45.455 0.00 0.00 42.81 3.85
212 213 6.920569 AAAATTACATCCATGTCCGTAGAC 57.079 37.500 0.00 0.00 41.97 2.59
213 214 9.621629 AATAAAAATTACATCCATGTCCGTAGA 57.378 29.630 0.00 0.00 41.97 2.59
216 217 8.966868 AGAAATAAAAATTACATCCATGTCCGT 58.033 29.630 0.00 0.00 41.97 4.69
217 218 9.236691 CAGAAATAAAAATTACATCCATGTCCG 57.763 33.333 0.00 0.00 41.97 4.79
289 290 6.725246 CCTTCTTGACTTTCGAAGCTAAAAA 58.275 36.000 0.00 0.00 34.33 1.94
290 291 5.277828 GCCTTCTTGACTTTCGAAGCTAAAA 60.278 40.000 0.00 0.00 34.33 1.52
291 292 4.213482 GCCTTCTTGACTTTCGAAGCTAAA 59.787 41.667 0.00 0.00 34.33 1.85
319 320 1.623311 CGCCAATTCCCCCTTCTTTTT 59.377 47.619 0.00 0.00 0.00 1.94
322 323 0.996583 TACGCCAATTCCCCCTTCTT 59.003 50.000 0.00 0.00 0.00 2.52
324 325 0.750546 GGTACGCCAATTCCCCCTTC 60.751 60.000 0.00 0.00 34.09 3.46
331 332 2.354821 GGTTGATCTGGTACGCCAATTC 59.645 50.000 0.00 0.00 45.51 2.17
379 380 2.097629 TCATCTCGATCGTGGACTTGAC 59.902 50.000 15.94 0.00 0.00 3.18
393 399 3.433615 GGAGTTGTTGGTTTCTCATCTCG 59.566 47.826 0.00 0.00 32.20 4.04
423 429 4.213906 TGTGTGTGCTAGAAACATGACATG 59.786 41.667 14.02 14.02 0.00 3.21
424 430 4.214119 GTGTGTGTGCTAGAAACATGACAT 59.786 41.667 0.00 0.00 30.28 3.06
425 431 3.559655 GTGTGTGTGCTAGAAACATGACA 59.440 43.478 0.00 2.33 0.00 3.58
426 432 3.809832 AGTGTGTGTGCTAGAAACATGAC 59.190 43.478 0.00 0.00 0.00 3.06
427 433 3.809279 CAGTGTGTGTGCTAGAAACATGA 59.191 43.478 0.00 0.00 0.00 3.07
444 451 2.111384 CTACTGGGATAGTGGCAGTGT 58.889 52.381 4.76 0.00 40.65 3.55
460 467 3.199946 TGGTTTAATAGCTGCTGCCTACT 59.800 43.478 13.43 0.00 40.80 2.57
461 468 3.541632 TGGTTTAATAGCTGCTGCCTAC 58.458 45.455 13.43 4.02 40.80 3.18
462 469 3.808728 CTGGTTTAATAGCTGCTGCCTA 58.191 45.455 13.43 4.75 40.80 3.93
463 470 2.648059 CTGGTTTAATAGCTGCTGCCT 58.352 47.619 13.43 2.55 40.80 4.75
464 471 1.066152 GCTGGTTTAATAGCTGCTGCC 59.934 52.381 13.43 5.48 43.39 4.85
465 472 2.481903 GCTGGTTTAATAGCTGCTGC 57.518 50.000 13.43 7.62 43.39 5.25
493 500 4.019174 GGTTTAGGGTTTAGGGTTTAGCC 58.981 47.826 0.00 0.00 0.00 3.93
494 501 4.019174 GGGTTTAGGGTTTAGGGTTTAGC 58.981 47.826 0.00 0.00 0.00 3.09
496 503 7.237982 GTTTAGGGTTTAGGGTTTAGGGTTTA 58.762 38.462 0.00 0.00 0.00 2.01
497 504 5.946644 TTAGGGTTTAGGGTTTAGGGTTT 57.053 39.130 0.00 0.00 0.00 3.27
499 506 4.044571 GGTTTAGGGTTTAGGGTTTAGGGT 59.955 45.833 0.00 0.00 0.00 4.34
502 509 5.525454 AGGGTTTAGGGTTTAGGGTTTAG 57.475 43.478 0.00 0.00 0.00 1.85
503 510 6.524018 GCTTAGGGTTTAGGGTTTAGGGTTTA 60.524 42.308 0.00 0.00 0.00 2.01
507 514 3.526430 AGCTTAGGGTTTAGGGTTTAGGG 59.474 47.826 0.00 0.00 0.00 3.53
508 515 4.384978 GGAGCTTAGGGTTTAGGGTTTAGG 60.385 50.000 0.00 0.00 0.00 2.69
509 516 4.226620 TGGAGCTTAGGGTTTAGGGTTTAG 59.773 45.833 0.00 0.00 0.00 1.85
510 517 4.019051 GTGGAGCTTAGGGTTTAGGGTTTA 60.019 45.833 0.00 0.00 0.00 2.01
511 518 2.990998 TGGAGCTTAGGGTTTAGGGTTT 59.009 45.455 0.00 0.00 0.00 3.27
512 519 2.307980 GTGGAGCTTAGGGTTTAGGGTT 59.692 50.000 0.00 0.00 0.00 4.11
514 521 1.212195 GGTGGAGCTTAGGGTTTAGGG 59.788 57.143 0.00 0.00 0.00 3.53
515 522 1.913419 TGGTGGAGCTTAGGGTTTAGG 59.087 52.381 0.00 0.00 0.00 2.69
516 523 2.681097 GCTGGTGGAGCTTAGGGTTTAG 60.681 54.545 0.00 0.00 45.21 1.85
517 524 1.280998 GCTGGTGGAGCTTAGGGTTTA 59.719 52.381 0.00 0.00 45.21 2.01
518 525 0.038310 GCTGGTGGAGCTTAGGGTTT 59.962 55.000 0.00 0.00 45.21 3.27
520 527 3.404773 GCTGGTGGAGCTTAGGGT 58.595 61.111 0.00 0.00 45.21 4.34
529 536 2.281970 CTTGCTGCTGCTGGTGGA 60.282 61.111 17.00 0.00 40.48 4.02
530 537 2.281970 TCTTGCTGCTGCTGGTGG 60.282 61.111 17.00 2.92 40.48 4.61
532 539 2.672307 GCTCTTGCTGCTGCTGGT 60.672 61.111 17.00 0.00 40.48 4.00
535 542 3.048475 CGTGCTCTTGCTGCTGCT 61.048 61.111 17.00 0.00 40.48 4.24
536 543 3.024782 CTCGTGCTCTTGCTGCTGC 62.025 63.158 8.89 8.89 40.48 5.25
537 544 2.389020 CCTCGTGCTCTTGCTGCTG 61.389 63.158 0.00 0.00 40.48 4.41
538 545 2.047465 CCTCGTGCTCTTGCTGCT 60.047 61.111 0.00 0.00 40.48 4.24
539 546 3.797546 GCCTCGTGCTCTTGCTGC 61.798 66.667 0.00 0.00 40.48 5.25
577 884 4.368808 CCGGAAGTTGCGCACGTG 62.369 66.667 11.12 12.28 0.00 4.49
825 1503 4.374702 GACAGCAGCCGCGTGTTG 62.375 66.667 4.92 8.77 45.49 3.33
839 1517 2.732016 CGGACACGTTGAGGGACA 59.268 61.111 0.00 0.00 34.81 4.02
1041 1719 0.674534 AGACGTTCAAGAAGCGGAGT 59.325 50.000 0.00 0.00 0.00 3.85
1047 1725 4.039703 TGTTGTACGAGACGTTCAAGAAG 58.960 43.478 14.27 0.00 44.69 2.85
1098 1776 2.046217 GGCCCGAACCTCTTCACC 60.046 66.667 0.00 0.00 0.00 4.02
1149 1827 0.246910 GGGAGTCCTTCGAGAACACC 59.753 60.000 9.58 0.00 0.00 4.16
1158 1836 4.821589 CGCGCAGGGGAGTCCTTC 62.822 72.222 8.75 1.94 45.47 3.46
1199 1889 2.225491 TCCTTCTTTCCATTTGTTCGCG 59.775 45.455 0.00 0.00 0.00 5.87
1200 1890 3.915437 TCCTTCTTTCCATTTGTTCGC 57.085 42.857 0.00 0.00 0.00 4.70
1201 1891 5.393962 GTGATCCTTCTTTCCATTTGTTCG 58.606 41.667 0.00 0.00 0.00 3.95
1208 1898 1.207089 TCGCGTGATCCTTCTTTCCAT 59.793 47.619 5.77 0.00 0.00 3.41
1211 1901 1.135083 TCCTCGCGTGATCCTTCTTTC 60.135 52.381 10.21 0.00 0.00 2.62
1220 1910 3.583276 TTTGCCGTCCTCGCGTGAT 62.583 57.895 10.21 0.00 35.54 3.06
1256 1949 2.757314 CCCAGATGCTTCTTCCTTTTCC 59.243 50.000 0.00 0.00 0.00 3.13
1263 1956 1.372087 CCACGCCCAGATGCTTCTTC 61.372 60.000 0.00 0.00 0.00 2.87
1369 2062 3.997064 CTCCGTGCTTCCTGCTCCG 62.997 68.421 0.00 0.00 43.37 4.63
1373 2066 1.294659 CTTGTCTCCGTGCTTCCTGC 61.295 60.000 0.00 0.00 43.25 4.85
1374 2067 0.671781 CCTTGTCTCCGTGCTTCCTG 60.672 60.000 0.00 0.00 0.00 3.86
1381 2074 2.125912 CGCCTCCTTGTCTCCGTG 60.126 66.667 0.00 0.00 0.00 4.94
1422 2115 1.813786 ACCTCGTCTTCTTCCTTCTCG 59.186 52.381 0.00 0.00 0.00 4.04
1796 4211 5.236478 TGCTCCAACTAGAAACGAAAGAAAG 59.764 40.000 0.00 0.00 0.00 2.62
1797 4212 5.120399 TGCTCCAACTAGAAACGAAAGAAA 58.880 37.500 0.00 0.00 0.00 2.52
1798 4213 4.699637 TGCTCCAACTAGAAACGAAAGAA 58.300 39.130 0.00 0.00 0.00 2.52
1799 4214 4.202223 ACTGCTCCAACTAGAAACGAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
1839 4254 2.597455 AGCCAACACTTTTATGGTGCT 58.403 42.857 0.00 0.00 35.85 4.40
1840 4255 3.385193 AAGCCAACACTTTTATGGTGC 57.615 42.857 0.00 0.00 35.85 5.01
1845 4260 7.708752 TCGAATTTCAAAAGCCAACACTTTTAT 59.291 29.630 2.23 0.00 45.68 1.40
1853 4293 3.361627 GCGTTCGAATTTCAAAAGCCAAC 60.362 43.478 0.00 0.00 0.00 3.77
1873 4313 3.761445 CTGCAATCAATGGCCGGCG 62.761 63.158 22.54 6.52 0.00 6.46
1874 4314 2.105528 CTGCAATCAATGGCCGGC 59.894 61.111 21.18 21.18 0.00 6.13
1884 4324 0.465278 GCTTCTCCCTCCCTGCAATC 60.465 60.000 0.00 0.00 0.00 2.67
1911 4351 3.445857 GCCTTTCTCCATGTACTCGTAC 58.554 50.000 0.35 0.35 36.63 3.67
2244 4687 3.273080 GAACCCGTACACGTCCGCT 62.273 63.158 0.58 0.00 37.74 5.52
2424 4867 2.358247 GTGCACAGGTACCCCACG 60.358 66.667 13.17 0.00 0.00 4.94
2526 4969 3.976375 CATGATCACGCGTCGCCG 61.976 66.667 9.86 9.50 37.07 6.46
2563 5011 4.993945 GCACGCAGTTCACACGCG 62.994 66.667 3.53 3.53 41.61 6.01
2585 5033 1.748122 GTGATGGTGGCTGGCAGAG 60.748 63.158 20.86 0.00 0.00 3.35
2600 5060 3.068064 TCGAGCGGAGGCATGTGA 61.068 61.111 0.00 0.00 43.41 3.58
2609 5069 4.056125 CTGGTGCACTCGAGCGGA 62.056 66.667 17.98 0.00 37.31 5.54
2626 5086 2.259618 CTGTGACGTGTACTATGGTGC 58.740 52.381 0.00 0.00 0.00 5.01
2627 5087 2.259618 GCTGTGACGTGTACTATGGTG 58.740 52.381 0.00 0.00 0.00 4.17
2628 5088 1.203994 GGCTGTGACGTGTACTATGGT 59.796 52.381 0.00 0.00 0.00 3.55
2629 5089 1.476891 AGGCTGTGACGTGTACTATGG 59.523 52.381 0.00 0.00 0.00 2.74
2630 5090 2.941453 AGGCTGTGACGTGTACTATG 57.059 50.000 0.00 0.00 0.00 2.23
2632 5092 2.029649 GGAAAGGCTGTGACGTGTACTA 60.030 50.000 0.00 0.00 0.00 1.82
2633 5093 1.270147 GGAAAGGCTGTGACGTGTACT 60.270 52.381 0.00 0.00 0.00 2.73
2634 5094 1.145803 GGAAAGGCTGTGACGTGTAC 58.854 55.000 0.00 0.00 0.00 2.90
2659 5119 4.738124 CCTGCCGATCATACATACAGTAG 58.262 47.826 0.00 0.00 35.85 2.57
2660 5120 3.056821 GCCTGCCGATCATACATACAGTA 60.057 47.826 0.00 0.00 37.06 2.74
2661 5121 2.289072 GCCTGCCGATCATACATACAGT 60.289 50.000 0.00 0.00 0.00 3.55
2662 5122 2.341257 GCCTGCCGATCATACATACAG 58.659 52.381 0.00 0.00 0.00 2.74
2663 5123 1.001974 GGCCTGCCGATCATACATACA 59.998 52.381 0.00 0.00 0.00 2.29
2664 5124 1.276421 AGGCCTGCCGATCATACATAC 59.724 52.381 3.11 0.00 41.95 2.39
2665 5125 1.550524 GAGGCCTGCCGATCATACATA 59.449 52.381 12.00 0.00 41.95 2.29
2666 5126 0.322975 GAGGCCTGCCGATCATACAT 59.677 55.000 12.00 0.00 41.95 2.29
2667 5127 1.748403 GAGGCCTGCCGATCATACA 59.252 57.895 12.00 0.00 41.95 2.29
2668 5128 1.373497 CGAGGCCTGCCGATCATAC 60.373 63.158 12.00 0.00 41.95 2.39
2669 5129 0.538746 TACGAGGCCTGCCGATCATA 60.539 55.000 19.78 0.00 41.95 2.15
2672 5132 2.027751 GTACGAGGCCTGCCGATC 59.972 66.667 19.78 8.61 41.95 3.69
2678 5138 1.878522 GCACATCGTACGAGGCCTG 60.879 63.158 28.00 20.45 0.00 4.85
2703 5163 0.970427 AAATGTTCCCCATCGCCACC 60.970 55.000 0.00 0.00 31.75 4.61
2707 5167 3.119173 TGAAATCAAATGTTCCCCATCGC 60.119 43.478 0.00 0.00 31.75 4.58
2709 5169 5.643348 GGTTTGAAATCAAATGTTCCCCATC 59.357 40.000 11.40 0.00 46.12 3.51
2712 5172 4.967036 TGGTTTGAAATCAAATGTTCCCC 58.033 39.130 11.40 7.67 46.12 4.81
2730 5198 5.643379 ACGCATTTATGTGAGAAATGGTT 57.357 34.783 10.05 0.00 42.20 3.67
2778 5324 2.747460 TTCATGCTCCTGCGGTGC 60.747 61.111 12.62 12.62 43.34 5.01
2783 5329 0.391130 TACGGTGTTCATGCTCCTGC 60.391 55.000 0.00 0.00 40.20 4.85
2784 5330 2.093306 TTACGGTGTTCATGCTCCTG 57.907 50.000 0.00 0.00 0.00 3.86
2787 5333 2.785679 GCATTTACGGTGTTCATGCTC 58.214 47.619 0.00 0.00 37.78 4.26
2788 5334 1.130373 CGCATTTACGGTGTTCATGCT 59.870 47.619 11.39 0.00 38.49 3.79
2789 5335 1.135803 ACGCATTTACGGTGTTCATGC 60.136 47.619 0.00 0.00 37.48 4.06
2794 5340 0.876399 GGGAACGCATTTACGGTGTT 59.124 50.000 0.00 0.00 41.30 3.32
2795 5341 2.547026 GGGAACGCATTTACGGTGT 58.453 52.632 0.00 0.00 37.37 4.16
2808 5354 1.134946 CTCCATGATTTTGGCGGGAAC 59.865 52.381 0.00 0.00 36.66 3.62
2809 5355 1.005332 TCTCCATGATTTTGGCGGGAA 59.995 47.619 0.00 0.00 36.66 3.97
2810 5356 0.623194 TCTCCATGATTTTGGCGGGA 59.377 50.000 0.00 0.00 36.66 5.14
2811 5357 1.473258 TTCTCCATGATTTTGGCGGG 58.527 50.000 0.00 0.00 36.66 6.13
2812 5358 3.193267 TCTTTTCTCCATGATTTTGGCGG 59.807 43.478 0.00 0.00 36.66 6.13
2813 5359 4.439305 TCTTTTCTCCATGATTTTGGCG 57.561 40.909 0.00 0.00 36.66 5.69
2814 5360 6.482973 TGTTTTCTTTTCTCCATGATTTTGGC 59.517 34.615 0.00 0.00 36.66 4.52
2815 5361 8.611654 ATGTTTTCTTTTCTCCATGATTTTGG 57.388 30.769 0.00 0.00 38.18 3.28
2816 5362 8.715088 GGATGTTTTCTTTTCTCCATGATTTTG 58.285 33.333 0.00 0.00 0.00 2.44
2817 5363 7.599998 CGGATGTTTTCTTTTCTCCATGATTTT 59.400 33.333 0.00 0.00 0.00 1.82
2818 5364 7.039784 TCGGATGTTTTCTTTTCTCCATGATTT 60.040 33.333 0.00 0.00 0.00 2.17
2819 5365 6.434028 TCGGATGTTTTCTTTTCTCCATGATT 59.566 34.615 0.00 0.00 0.00 2.57
2820 5366 5.945784 TCGGATGTTTTCTTTTCTCCATGAT 59.054 36.000 0.00 0.00 0.00 2.45
2821 5367 5.181245 GTCGGATGTTTTCTTTTCTCCATGA 59.819 40.000 0.00 0.00 0.00 3.07
2822 5368 5.048782 TGTCGGATGTTTTCTTTTCTCCATG 60.049 40.000 0.00 0.00 0.00 3.66
2823 5369 5.070001 TGTCGGATGTTTTCTTTTCTCCAT 58.930 37.500 0.00 0.00 0.00 3.41
2824 5370 4.456535 TGTCGGATGTTTTCTTTTCTCCA 58.543 39.130 0.00 0.00 0.00 3.86
2825 5371 5.432885 TTGTCGGATGTTTTCTTTTCTCC 57.567 39.130 0.00 0.00 0.00 3.71
2826 5372 7.537649 GGTTATTGTCGGATGTTTTCTTTTCTC 59.462 37.037 0.00 0.00 0.00 2.87
2827 5373 7.013846 TGGTTATTGTCGGATGTTTTCTTTTCT 59.986 33.333 0.00 0.00 0.00 2.52
2828 5374 7.142680 TGGTTATTGTCGGATGTTTTCTTTTC 58.857 34.615 0.00 0.00 0.00 2.29
2829 5375 7.045126 TGGTTATTGTCGGATGTTTTCTTTT 57.955 32.000 0.00 0.00 0.00 2.27
2830 5376 6.642707 TGGTTATTGTCGGATGTTTTCTTT 57.357 33.333 0.00 0.00 0.00 2.52
2831 5377 6.443792 GTTGGTTATTGTCGGATGTTTTCTT 58.556 36.000 0.00 0.00 0.00 2.52
2832 5378 5.334569 CGTTGGTTATTGTCGGATGTTTTCT 60.335 40.000 0.00 0.00 0.00 2.52
2833 5379 4.849383 CGTTGGTTATTGTCGGATGTTTTC 59.151 41.667 0.00 0.00 0.00 2.29
2834 5380 4.320641 CCGTTGGTTATTGTCGGATGTTTT 60.321 41.667 0.00 0.00 43.22 2.43
2835 5381 3.189702 CCGTTGGTTATTGTCGGATGTTT 59.810 43.478 0.00 0.00 43.22 2.83
2836 5382 2.745281 CCGTTGGTTATTGTCGGATGTT 59.255 45.455 0.00 0.00 43.22 2.71
2837 5383 2.352388 CCGTTGGTTATTGTCGGATGT 58.648 47.619 0.00 0.00 43.22 3.06
2838 5384 1.668751 CCCGTTGGTTATTGTCGGATG 59.331 52.381 3.45 0.00 43.22 3.51
2839 5385 1.279846 ACCCGTTGGTTATTGTCGGAT 59.720 47.619 3.45 0.00 44.75 4.18
2840 5386 0.686224 ACCCGTTGGTTATTGTCGGA 59.314 50.000 3.45 0.00 44.75 4.55
2841 5387 0.800012 CACCCGTTGGTTATTGTCGG 59.200 55.000 0.00 0.00 44.75 4.79
2860 5406 7.120923 TGGAACTTGGATACTAAGTGATACC 57.879 40.000 0.00 0.00 38.32 2.73
2862 5408 8.141298 TGTTGGAACTTGGATACTAAGTGATA 57.859 34.615 0.00 0.00 38.32 2.15
2865 5411 5.643777 CCTGTTGGAACTTGGATACTAAGTG 59.356 44.000 0.00 0.00 38.32 3.16
2867 5413 6.049955 TCCTGTTGGAACTTGGATACTAAG 57.950 41.667 0.00 0.00 39.87 2.18
2868 5414 6.636454 ATCCTGTTGGAACTTGGATACTAA 57.364 37.500 12.67 0.00 46.80 2.24
2869 5415 6.636454 AATCCTGTTGGAACTTGGATACTA 57.364 37.500 13.90 0.00 46.80 1.82
2870 5416 5.520748 AATCCTGTTGGAACTTGGATACT 57.479 39.130 13.90 2.79 46.80 2.12
2871 5417 5.823045 CCTAATCCTGTTGGAACTTGGATAC 59.177 44.000 13.90 0.00 46.80 2.24
2872 5418 5.729229 TCCTAATCCTGTTGGAACTTGGATA 59.271 40.000 13.90 2.06 46.80 2.59
2888 5434 4.471747 ACCTTCTCTTGTTCCTCCTAATCC 59.528 45.833 0.00 0.00 0.00 3.01
2906 5452 5.293535 AGGTAGCAGTACGATGCACCTTC 62.294 52.174 17.64 0.00 46.38 3.46
2922 5468 1.312815 GGATTCCACATGCAGGTAGC 58.687 55.000 2.51 0.00 45.96 3.58
2924 5470 4.507157 CCATATGGATTCCACATGCAGGTA 60.507 45.833 17.49 0.16 37.13 3.08
2925 5471 3.493334 CATATGGATTCCACATGCAGGT 58.507 45.455 10.90 0.00 31.44 4.00
2926 5472 2.823747 CCATATGGATTCCACATGCAGG 59.176 50.000 17.49 0.00 37.13 4.85
2949 5498 3.921677 TCGATCTCACCTTTTGTACCAC 58.078 45.455 0.00 0.00 0.00 4.16
2968 5517 2.196925 CCTCCCCACCTCGATCTCG 61.197 68.421 0.00 0.00 41.45 4.04
2969 5518 1.110518 GTCCTCCCCACCTCGATCTC 61.111 65.000 0.00 0.00 0.00 2.75
2982 5531 0.103208 CATGTCTGCCTACGTCCTCC 59.897 60.000 0.00 0.00 0.00 4.30
3006 5555 1.557099 TCTTGCCACTCCATACTCGT 58.443 50.000 0.00 0.00 0.00 4.18
3046 5599 6.713450 ACTAACCCATGTTCGTTTTACATCTT 59.287 34.615 0.00 0.00 34.11 2.40
3102 5659 1.853963 TCTCTGACTCCCAGCCTTAC 58.146 55.000 0.00 0.00 42.62 2.34
3105 5662 0.754957 CGATCTCTGACTCCCAGCCT 60.755 60.000 0.00 0.00 42.62 4.58
3123 5680 0.324943 AACCAACCCCAGTGAGATCG 59.675 55.000 0.00 0.00 0.00 3.69
3155 5718 1.960689 TGGCCTCACAAACCTAAAAGC 59.039 47.619 3.32 0.00 0.00 3.51
3179 5778 2.174764 GTACTCTCGCGTACATGTGTG 58.825 52.381 9.11 1.30 39.56 3.82
3180 5779 1.808343 TGTACTCTCGCGTACATGTGT 59.192 47.619 9.11 0.00 43.36 3.72
3181 5780 2.537639 TGTACTCTCGCGTACATGTG 57.462 50.000 9.11 0.00 43.36 3.21
3182 5781 3.564235 TTTGTACTCTCGCGTACATGT 57.436 42.857 5.77 2.69 46.35 3.21
3183 5782 3.242944 CCATTTGTACTCTCGCGTACATG 59.757 47.826 5.77 3.80 46.35 3.21
3184 5783 3.119245 ACCATTTGTACTCTCGCGTACAT 60.119 43.478 5.77 0.00 46.35 2.29
3185 5784 2.229543 ACCATTTGTACTCTCGCGTACA 59.770 45.455 5.77 4.38 45.70 2.90
3186 5785 2.850647 GACCATTTGTACTCTCGCGTAC 59.149 50.000 5.77 1.23 40.06 3.67
3219 5818 3.905249 GGCAACCCGACAAGATCC 58.095 61.111 0.00 0.00 0.00 3.36
3245 5844 0.036875 GAACTGTCCCTCCCCACAAG 59.963 60.000 0.00 0.00 0.00 3.16
3253 5852 0.036858 GCTGACCTGAACTGTCCCTC 60.037 60.000 0.00 0.00 31.60 4.30
3285 5899 2.058125 TACCGGTGGAAGCAAGCCAA 62.058 55.000 19.93 0.00 37.12 4.52
3293 5914 0.460311 CTGCTACCTACCGGTGGAAG 59.540 60.000 21.08 16.62 43.98 3.46
3309 5930 3.044059 GAATCGCCACTGTGCCTGC 62.044 63.158 1.29 0.00 0.00 4.85
3313 5934 0.950555 TGACAGAATCGCCACTGTGC 60.951 55.000 1.29 0.00 45.54 4.57
3324 5945 0.740868 CACCCGCATCGTGACAGAAT 60.741 55.000 0.00 0.00 32.77 2.40
3338 5959 1.000019 TCTCCTAGACCCACACCCG 60.000 63.158 0.00 0.00 0.00 5.28
3360 5981 2.480845 GTGTGCTTCCAACTTAGTCGT 58.519 47.619 0.00 0.00 0.00 4.34
3415 6036 3.005050 ACAATAACCGAGAAGTCACGACA 59.995 43.478 0.00 0.00 31.68 4.35
3467 6088 6.683110 GCTCCATTTCCATACTCTTCGACTTA 60.683 42.308 0.00 0.00 0.00 2.24
3468 6089 5.665459 CTCCATTTCCATACTCTTCGACTT 58.335 41.667 0.00 0.00 0.00 3.01
3469 6090 4.442192 GCTCCATTTCCATACTCTTCGACT 60.442 45.833 0.00 0.00 0.00 4.18
3470 6091 3.804873 GCTCCATTTCCATACTCTTCGAC 59.195 47.826 0.00 0.00 0.00 4.20
3472 6093 3.797039 TGCTCCATTTCCATACTCTTCG 58.203 45.455 0.00 0.00 0.00 3.79
3480 6101 2.961062 GGTAGCAATGCTCCATTTCCAT 59.039 45.455 12.53 0.00 40.44 3.41
3484 6105 2.128771 ACGGTAGCAATGCTCCATTT 57.871 45.000 12.53 0.00 40.44 2.32
3489 6110 2.202566 GGTTCTACGGTAGCAATGCTC 58.797 52.381 12.53 3.42 40.44 4.26
3490 6111 1.553248 TGGTTCTACGGTAGCAATGCT 59.447 47.619 13.92 13.92 43.41 3.79
3491 6112 2.018542 TGGTTCTACGGTAGCAATGC 57.981 50.000 10.34 0.00 0.00 3.56
3492 6113 3.938963 ACAATGGTTCTACGGTAGCAATG 59.061 43.478 10.34 8.57 30.92 2.82
3493 6114 4.216411 ACAATGGTTCTACGGTAGCAAT 57.784 40.909 10.34 0.00 0.00 3.56
3494 6115 3.688694 ACAATGGTTCTACGGTAGCAA 57.311 42.857 10.34 3.58 0.00 3.91
3495 6116 3.688694 AACAATGGTTCTACGGTAGCA 57.311 42.857 10.34 3.60 29.00 3.49
3506 6127 1.533731 CAACGCCGTAGAACAATGGTT 59.466 47.619 0.00 0.00 40.76 3.67
3507 6128 1.153353 CAACGCCGTAGAACAATGGT 58.847 50.000 0.00 0.00 0.00 3.55
3508 6129 0.446222 CCAACGCCGTAGAACAATGG 59.554 55.000 0.00 0.00 0.00 3.16
3509 6130 0.446222 CCCAACGCCGTAGAACAATG 59.554 55.000 0.00 0.00 0.00 2.82
3510 6131 0.035739 ACCCAACGCCGTAGAACAAT 59.964 50.000 0.00 0.00 0.00 2.71
3511 6132 0.179051 AACCCAACGCCGTAGAACAA 60.179 50.000 0.00 0.00 0.00 2.83
3512 6133 0.678395 TAACCCAACGCCGTAGAACA 59.322 50.000 0.00 0.00 0.00 3.18
3513 6134 1.794512 TTAACCCAACGCCGTAGAAC 58.205 50.000 0.00 0.00 0.00 3.01
3514 6135 2.540265 TTTAACCCAACGCCGTAGAA 57.460 45.000 0.00 0.00 0.00 2.10
3515 6136 2.540265 TTTTAACCCAACGCCGTAGA 57.460 45.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.