Multiple sequence alignment - TraesCS7A01G352100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G352100 chr7A 100.000 3261 0 0 1 3261 515225446 515228706 0.000000e+00 6023.0
1 TraesCS7A01G352100 chr7A 88.663 591 55 8 3 583 733524092 733524680 0.000000e+00 710.0
2 TraesCS7A01G352100 chr7A 79.896 577 101 13 2539 3105 199721245 199721816 3.030000e-110 409.0
3 TraesCS7A01G352100 chr7B 91.502 1624 108 19 665 2280 505370039 505368438 0.000000e+00 2207.0
4 TraesCS7A01G352100 chr7D 90.662 1585 95 21 695 2267 479599100 479597557 0.000000e+00 2058.0
5 TraesCS7A01G352100 chr7D 91.042 547 39 8 13 554 29778675 29778134 0.000000e+00 730.0
6 TraesCS7A01G352100 chr7D 78.309 544 96 19 2649 3180 287895937 287895404 6.740000e-87 331.0
7 TraesCS7A01G352100 chr7D 74.394 660 132 32 2506 3141 229246401 229245755 6.990000e-62 248.0
8 TraesCS7A01G352100 chr1D 91.723 592 38 5 3 585 470208859 470209448 0.000000e+00 811.0
9 TraesCS7A01G352100 chr1D 89.212 584 52 6 3 583 66766585 66767160 0.000000e+00 719.0
10 TraesCS7A01G352100 chr1D 81.021 764 126 17 2508 3259 364774963 364775719 1.010000e-164 590.0
11 TraesCS7A01G352100 chr3A 90.216 603 46 7 3 594 725341944 725342544 0.000000e+00 774.0
12 TraesCS7A01G352100 chr3A 82.058 379 47 11 1306 1684 12744698 12744341 1.470000e-78 303.0
13 TraesCS7A01G352100 chr3A 80.260 385 50 13 1306 1685 12784626 12784989 1.930000e-67 267.0
14 TraesCS7A01G352100 chr1A 89.765 596 48 9 3 587 150883440 150882847 0.000000e+00 750.0
15 TraesCS7A01G352100 chr1A 82.372 624 101 9 2640 3256 463919334 463919955 4.790000e-148 534.0
16 TraesCS7A01G352100 chr5D 89.615 597 47 8 3 588 391319296 391318704 0.000000e+00 745.0
17 TraesCS7A01G352100 chr5D 83.893 447 60 10 2504 2944 544159746 544159306 1.810000e-112 416.0
18 TraesCS7A01G352100 chr5D 82.655 467 70 9 2506 2966 245382698 245383159 1.410000e-108 403.0
19 TraesCS7A01G352100 chr5D 87.218 133 13 4 2747 2876 487474106 487473975 7.290000e-32 148.0
20 TraesCS7A01G352100 chr5D 83.099 142 18 4 3112 3250 245631552 245631690 1.230000e-24 124.0
21 TraesCS7A01G352100 chr2B 88.667 600 43 13 3 583 518762469 518761876 0.000000e+00 708.0
22 TraesCS7A01G352100 chr5B 88.364 593 54 11 3 585 687693488 687694075 0.000000e+00 699.0
23 TraesCS7A01G352100 chr4D 78.209 592 107 19 2526 3105 368509007 368509588 3.090000e-95 359.0
24 TraesCS7A01G352100 chr4D 81.250 224 23 6 2058 2280 367038982 367039187 2.600000e-36 163.0
25 TraesCS7A01G352100 chr4A 81.839 446 64 13 2504 2944 625115718 625116151 3.090000e-95 359.0
26 TraesCS7A01G352100 chr4A 76.701 588 110 24 2611 3184 142794789 142794215 5.290000e-78 302.0
27 TraesCS7A01G352100 chr3D 83.204 387 50 9 2570 2944 474552245 474551862 1.120000e-89 340.0
28 TraesCS7A01G352100 chr3D 82.323 396 59 11 2504 2893 370938541 370938931 1.880000e-87 333.0
29 TraesCS7A01G352100 chr3D 82.940 381 40 11 1306 1684 7695352 7695709 1.460000e-83 320.0
30 TraesCS7A01G352100 chr3D 76.277 607 92 21 1292 1889 7601157 7600594 3.210000e-70 276.0
31 TraesCS7A01G352100 chr3D 82.838 303 39 12 2649 2944 126087831 126088127 3.230000e-65 259.0
32 TraesCS7A01G352100 chr3D 94.000 50 2 1 2673 2721 309823731 309823682 1.250000e-09 75.0
33 TraesCS7A01G352100 chr2D 78.235 510 92 16 2643 3140 190436055 190435553 3.160000e-80 309.0
34 TraesCS7A01G352100 chr3B 77.338 556 89 23 1119 1663 10013961 10014490 8.850000e-76 294.0
35 TraesCS7A01G352100 chr6D 77.818 275 57 4 2623 2893 402053519 402053245 2.010000e-37 167.0
36 TraesCS7A01G352100 chr6D 79.695 197 28 10 2649 2838 141343062 141342871 7.340000e-27 132.0
37 TraesCS7A01G352100 chr1B 96.875 32 1 0 2084 2115 669693560 669693591 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G352100 chr7A 515225446 515228706 3260 False 6023 6023 100.000 1 3261 1 chr7A.!!$F2 3260
1 TraesCS7A01G352100 chr7A 733524092 733524680 588 False 710 710 88.663 3 583 1 chr7A.!!$F3 580
2 TraesCS7A01G352100 chr7A 199721245 199721816 571 False 409 409 79.896 2539 3105 1 chr7A.!!$F1 566
3 TraesCS7A01G352100 chr7B 505368438 505370039 1601 True 2207 2207 91.502 665 2280 1 chr7B.!!$R1 1615
4 TraesCS7A01G352100 chr7D 479597557 479599100 1543 True 2058 2058 90.662 695 2267 1 chr7D.!!$R4 1572
5 TraesCS7A01G352100 chr7D 29778134 29778675 541 True 730 730 91.042 13 554 1 chr7D.!!$R1 541
6 TraesCS7A01G352100 chr7D 287895404 287895937 533 True 331 331 78.309 2649 3180 1 chr7D.!!$R3 531
7 TraesCS7A01G352100 chr7D 229245755 229246401 646 True 248 248 74.394 2506 3141 1 chr7D.!!$R2 635
8 TraesCS7A01G352100 chr1D 470208859 470209448 589 False 811 811 91.723 3 585 1 chr1D.!!$F3 582
9 TraesCS7A01G352100 chr1D 66766585 66767160 575 False 719 719 89.212 3 583 1 chr1D.!!$F1 580
10 TraesCS7A01G352100 chr1D 364774963 364775719 756 False 590 590 81.021 2508 3259 1 chr1D.!!$F2 751
11 TraesCS7A01G352100 chr3A 725341944 725342544 600 False 774 774 90.216 3 594 1 chr3A.!!$F2 591
12 TraesCS7A01G352100 chr1A 150882847 150883440 593 True 750 750 89.765 3 587 1 chr1A.!!$R1 584
13 TraesCS7A01G352100 chr1A 463919334 463919955 621 False 534 534 82.372 2640 3256 1 chr1A.!!$F1 616
14 TraesCS7A01G352100 chr5D 391318704 391319296 592 True 745 745 89.615 3 588 1 chr5D.!!$R1 585
15 TraesCS7A01G352100 chr2B 518761876 518762469 593 True 708 708 88.667 3 583 1 chr2B.!!$R1 580
16 TraesCS7A01G352100 chr5B 687693488 687694075 587 False 699 699 88.364 3 585 1 chr5B.!!$F1 582
17 TraesCS7A01G352100 chr4D 368509007 368509588 581 False 359 359 78.209 2526 3105 1 chr4D.!!$F2 579
18 TraesCS7A01G352100 chr4A 142794215 142794789 574 True 302 302 76.701 2611 3184 1 chr4A.!!$R1 573
19 TraesCS7A01G352100 chr3D 7600594 7601157 563 True 276 276 76.277 1292 1889 1 chr3D.!!$R1 597
20 TraesCS7A01G352100 chr2D 190435553 190436055 502 True 309 309 78.235 2643 3140 1 chr2D.!!$R1 497
21 TraesCS7A01G352100 chr3B 10013961 10014490 529 False 294 294 77.338 1119 1663 1 chr3B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 790 0.108472 TCTGCAGCATCTTCCACTCG 60.108 55.0 9.47 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2390 2477 0.033894 AGAAGACGGAGGAGGAGGAC 60.034 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.402968 CATGGGCGGAATGTCTTTCAG 59.597 52.381 1.34 0.00 35.94 3.02
112 113 4.011698 CACACACATTCCCATGAAGATGA 58.988 43.478 0.00 0.00 33.05 2.92
143 144 3.134127 GCCAACACCATCGGAGCC 61.134 66.667 0.00 0.00 0.00 4.70
177 178 0.753479 GCACGATGAGGAGAGGGAGA 60.753 60.000 0.00 0.00 0.00 3.71
223 239 4.315588 GTCTTCCGAGGACGAGGA 57.684 61.111 0.00 0.00 42.66 3.71
238 254 1.809271 CGAGGACGAGGACGAGGAATA 60.809 57.143 0.00 0.00 42.66 1.75
290 306 6.111382 TGATTTGCATTTTGAACTTGGTTGA 58.889 32.000 0.00 0.00 0.00 3.18
376 393 7.408123 TGTTCATTGCATTTTGAATGTTTCAC 58.592 30.769 9.58 0.00 39.87 3.18
377 394 7.065443 TGTTCATTGCATTTTGAATGTTTCACA 59.935 29.630 9.58 1.68 39.87 3.58
415 439 9.027202 TGTCAAAATGATATATATGCAATGCCT 57.973 29.630 1.53 0.00 0.00 4.75
476 505 1.201943 GGCGCGCGAGTTACATTTTAA 60.202 47.619 37.18 0.00 0.00 1.52
514 543 2.568090 CTTGAGGCCGCGCAAAAT 59.432 55.556 8.75 0.00 0.00 1.82
550 579 3.476181 GCGACAAACTAGTTTTTAGCGG 58.524 45.455 18.25 8.63 0.00 5.52
588 617 2.484417 CGGTTGGAGATGCTCTTATGCT 60.484 50.000 0.00 0.00 0.00 3.79
589 618 3.549794 GGTTGGAGATGCTCTTATGCTT 58.450 45.455 0.00 0.00 0.00 3.91
590 619 3.563390 GGTTGGAGATGCTCTTATGCTTC 59.437 47.826 0.00 0.00 37.38 3.86
591 620 4.194640 GTTGGAGATGCTCTTATGCTTCA 58.805 43.478 0.00 0.00 38.90 3.02
592 621 4.701651 TGGAGATGCTCTTATGCTTCAT 57.298 40.909 0.00 0.00 38.90 2.57
593 622 5.045012 TGGAGATGCTCTTATGCTTCATT 57.955 39.130 0.00 0.00 38.90 2.57
594 623 6.178607 TGGAGATGCTCTTATGCTTCATTA 57.821 37.500 0.00 0.00 38.90 1.90
595 624 6.776744 TGGAGATGCTCTTATGCTTCATTAT 58.223 36.000 0.00 0.00 38.90 1.28
596 625 6.653740 TGGAGATGCTCTTATGCTTCATTATG 59.346 38.462 0.00 0.00 38.90 1.90
597 626 6.877855 GGAGATGCTCTTATGCTTCATTATGA 59.122 38.462 0.00 0.00 38.90 2.15
598 627 7.064847 GGAGATGCTCTTATGCTTCATTATGAG 59.935 40.741 0.00 0.00 38.90 2.90
599 628 7.451732 AGATGCTCTTATGCTTCATTATGAGT 58.548 34.615 0.00 0.00 38.90 3.41
600 629 7.603404 AGATGCTCTTATGCTTCATTATGAGTC 59.397 37.037 0.00 0.00 38.90 3.36
601 630 6.585416 TGCTCTTATGCTTCATTATGAGTCA 58.415 36.000 0.00 0.00 0.00 3.41
602 631 7.049754 TGCTCTTATGCTTCATTATGAGTCAA 58.950 34.615 0.00 0.00 0.00 3.18
603 632 7.718314 TGCTCTTATGCTTCATTATGAGTCAAT 59.282 33.333 0.00 0.00 0.00 2.57
604 633 9.212641 GCTCTTATGCTTCATTATGAGTCAATA 57.787 33.333 0.00 0.00 0.00 1.90
611 640 9.617523 TGCTTCATTATGAGTCAATAAGATTCA 57.382 29.630 0.00 0.00 45.51 2.57
612 641 9.875675 GCTTCATTATGAGTCAATAAGATTCAC 57.124 33.333 0.00 0.00 44.45 3.18
614 643 9.904198 TTCATTATGAGTCAATAAGATTCACCA 57.096 29.630 0.00 0.00 44.45 4.17
619 648 8.585471 ATGAGTCAATAAGATTCACCATTTGT 57.415 30.769 0.00 0.00 44.45 2.83
620 649 8.044060 TGAGTCAATAAGATTCACCATTTGTC 57.956 34.615 0.00 0.00 37.98 3.18
621 650 7.076842 AGTCAATAAGATTCACCATTTGTCG 57.923 36.000 0.00 0.00 0.00 4.35
622 651 6.878923 AGTCAATAAGATTCACCATTTGTCGA 59.121 34.615 0.00 0.00 0.00 4.20
623 652 7.390440 AGTCAATAAGATTCACCATTTGTCGAA 59.610 33.333 0.00 0.00 0.00 3.71
624 653 8.020819 GTCAATAAGATTCACCATTTGTCGAAA 58.979 33.333 0.00 0.00 0.00 3.46
625 654 8.572185 TCAATAAGATTCACCATTTGTCGAAAA 58.428 29.630 0.00 0.00 0.00 2.29
626 655 9.190858 CAATAAGATTCACCATTTGTCGAAAAA 57.809 29.630 2.60 2.60 0.00 1.94
704 733 3.251972 GCTTGAAGAAGACAACTTGGAGG 59.748 47.826 0.00 0.00 36.39 4.30
706 735 4.771114 TGAAGAAGACAACTTGGAGGAA 57.229 40.909 0.00 0.00 36.39 3.36
710 739 3.071747 AGAAGACAACTTGGAGGAAGACC 59.928 47.826 0.00 0.00 36.39 3.85
723 752 3.903467 AGGAAGACCTCCCATAAAATGC 58.097 45.455 0.00 0.00 46.81 3.56
731 760 1.815613 TCCCATAAAATGCACACGTGG 59.184 47.619 21.57 10.05 0.00 4.94
743 772 2.182537 ACGTGGGGTAATCGCGTC 59.817 61.111 5.77 0.00 46.42 5.19
761 790 0.108472 TCTGCAGCATCTTCCACTCG 60.108 55.000 9.47 0.00 0.00 4.18
844 873 2.260869 GCTCTCCCGCAAACAGCAA 61.261 57.895 0.00 0.00 46.13 3.91
855 884 0.746659 AAACAGCAACAGACTTGCCC 59.253 50.000 1.45 0.00 45.98 5.36
871 900 0.179097 GCCCCTCAAGACTGATCGAC 60.179 60.000 0.00 0.00 0.00 4.20
942 975 2.342478 AGTGTCACTGACCTCGTCC 58.658 57.895 4.21 0.00 0.00 4.79
960 993 1.374758 CCTCCAACACTCACTCCGC 60.375 63.158 0.00 0.00 0.00 5.54
1024 1066 2.669569 CTCACCAAGCCACACGGG 60.670 66.667 0.00 0.00 40.85 5.28
1051 1093 3.723348 GACCAAGACCGCGCAACC 61.723 66.667 8.75 0.00 0.00 3.77
1095 1140 2.336809 GCCGCCTCTATGGACTCG 59.663 66.667 0.00 0.00 38.35 4.18
1203 1248 1.300697 GGTGTTCCTGACGTTCGCT 60.301 57.895 0.00 0.00 0.00 4.93
1204 1249 1.557443 GGTGTTCCTGACGTTCGCTG 61.557 60.000 0.00 0.00 0.00 5.18
1419 1495 2.989253 TGCCTGACCGAGCTCGAA 60.989 61.111 36.59 20.00 43.02 3.71
1764 1846 4.954118 AGGACAGTGGCGACCCCA 62.954 66.667 0.00 0.00 42.79 4.96
1791 1873 1.601419 CGTCCAAGTCTCCGGGCTTA 61.601 60.000 0.00 0.00 0.00 3.09
1818 1900 2.934801 GCTGAGGTCTTTGAAGAGGCTC 60.935 54.545 6.34 6.34 35.32 4.70
1911 1993 3.105283 GGACACAGACCAGGGTATTAGT 58.895 50.000 0.00 0.00 0.00 2.24
1949 2031 2.989824 AGCTCCCGTGTAGCGTGT 60.990 61.111 0.00 0.00 44.87 4.49
1950 2032 1.651240 GAGCTCCCGTGTAGCGTGTA 61.651 60.000 0.87 0.00 44.87 2.90
1966 2048 2.620115 CGTGTAGAGCCGGAATTACCTA 59.380 50.000 5.05 0.00 36.31 3.08
1976 2058 1.406539 GGAATTACCTAGGACGTGCGA 59.593 52.381 17.98 0.00 35.41 5.10
1978 2060 0.743097 ATTACCTAGGACGTGCGACC 59.257 55.000 17.98 5.04 0.00 4.79
1979 2061 0.608856 TTACCTAGGACGTGCGACCA 60.609 55.000 17.98 1.65 32.53 4.02
1983 2065 1.863662 CTAGGACGTGCGACCACAGT 61.864 60.000 14.50 0.00 42.17 3.55
2086 2173 5.027293 CATCTCCAACAGGTGATGTATCA 57.973 43.478 15.02 0.00 43.00 2.15
2115 2202 7.651704 GGCACACAAAAAGTAGTTTTACATCAT 59.348 33.333 8.68 0.00 37.32 2.45
2147 2234 8.033038 AGTGAATTTTCCATCATCTCAAACATG 58.967 33.333 0.00 0.00 0.00 3.21
2201 2288 5.104374 CACCATTTTGCTCCAATATGTGAC 58.896 41.667 7.33 0.00 33.27 3.67
2209 2296 9.549078 TTTTGCTCCAATATGTGACGTATATTA 57.451 29.630 0.00 0.00 31.39 0.98
2226 2313 7.064847 ACGTATATTAGGCACGAAAACATCAAA 59.935 33.333 2.14 0.00 38.96 2.69
2272 2359 7.083858 ACATGACAATTTCAAACATAGTTCCG 58.916 34.615 0.00 0.00 37.92 4.30
2280 2367 9.840427 AATTTCAAACATAGTTCCGATACAAAG 57.160 29.630 0.00 0.00 0.00 2.77
2281 2368 8.610248 TTTCAAACATAGTTCCGATACAAAGA 57.390 30.769 0.00 0.00 0.00 2.52
2282 2369 8.786826 TTCAAACATAGTTCCGATACAAAGAT 57.213 30.769 0.00 0.00 0.00 2.40
2283 2370 8.786826 TCAAACATAGTTCCGATACAAAGATT 57.213 30.769 0.00 0.00 0.00 2.40
2284 2371 8.664798 TCAAACATAGTTCCGATACAAAGATTG 58.335 33.333 0.00 0.00 0.00 2.67
2286 2373 8.561738 AACATAGTTCCGATACAAAGATTGTT 57.438 30.769 0.54 0.00 42.22 2.83
2287 2374 8.561738 ACATAGTTCCGATACAAAGATTGTTT 57.438 30.769 0.54 0.00 42.22 2.83
2288 2375 8.450964 ACATAGTTCCGATACAAAGATTGTTTG 58.549 33.333 4.84 4.84 42.22 2.93
2289 2376 8.664798 CATAGTTCCGATACAAAGATTGTTTGA 58.335 33.333 12.73 0.00 42.22 2.69
2290 2377 6.899114 AGTTCCGATACAAAGATTGTTTGAC 58.101 36.000 12.73 0.00 42.22 3.18
2291 2378 5.873179 TCCGATACAAAGATTGTTTGACC 57.127 39.130 12.73 1.60 42.22 4.02
2292 2379 5.309638 TCCGATACAAAGATTGTTTGACCA 58.690 37.500 12.73 0.00 42.22 4.02
2293 2380 5.411361 TCCGATACAAAGATTGTTTGACCAG 59.589 40.000 12.73 2.59 42.22 4.00
2294 2381 5.411361 CCGATACAAAGATTGTTTGACCAGA 59.589 40.000 12.73 0.00 42.22 3.86
2295 2382 6.072728 CCGATACAAAGATTGTTTGACCAGAA 60.073 38.462 12.73 0.00 42.22 3.02
2296 2383 7.359595 CGATACAAAGATTGTTTGACCAGAAA 58.640 34.615 12.73 0.00 42.22 2.52
2297 2384 7.323656 CGATACAAAGATTGTTTGACCAGAAAC 59.676 37.037 12.73 0.00 42.22 2.78
2298 2385 6.530019 ACAAAGATTGTTTGACCAGAAACT 57.470 33.333 12.73 0.00 42.22 2.66
2299 2386 7.639113 ACAAAGATTGTTTGACCAGAAACTA 57.361 32.000 12.73 0.00 42.22 2.24
2300 2387 7.480810 ACAAAGATTGTTTGACCAGAAACTAC 58.519 34.615 12.73 0.00 42.22 2.73
2301 2388 7.339466 ACAAAGATTGTTTGACCAGAAACTACT 59.661 33.333 12.73 0.00 42.22 2.57
2302 2389 7.497925 AAGATTGTTTGACCAGAAACTACTC 57.502 36.000 0.00 0.00 36.86 2.59
2303 2390 6.591935 AGATTGTTTGACCAGAAACTACTCA 58.408 36.000 0.00 0.00 36.86 3.41
2304 2391 7.227156 AGATTGTTTGACCAGAAACTACTCAT 58.773 34.615 0.00 0.00 36.86 2.90
2305 2392 6.861065 TTGTTTGACCAGAAACTACTCATC 57.139 37.500 0.00 0.00 36.86 2.92
2306 2393 5.924356 TGTTTGACCAGAAACTACTCATCA 58.076 37.500 0.00 0.00 36.86 3.07
2307 2394 5.991606 TGTTTGACCAGAAACTACTCATCAG 59.008 40.000 0.00 0.00 36.86 2.90
2308 2395 6.183360 TGTTTGACCAGAAACTACTCATCAGA 60.183 38.462 0.00 0.00 36.86 3.27
2309 2396 6.367422 GTTTGACCAGAAACTACTCATCAGAG 59.633 42.308 0.00 0.00 38.87 3.35
2319 2406 0.457851 CTCATCAGAGTGGTCGTCCC 59.542 60.000 0.00 0.00 37.11 4.46
2320 2407 0.251608 TCATCAGAGTGGTCGTCCCA 60.252 55.000 0.00 0.00 42.51 4.37
2328 2415 2.282827 TGGTCGTCCCAATCGATGT 58.717 52.632 0.00 0.00 41.50 3.06
2329 2416 0.174845 TGGTCGTCCCAATCGATGTC 59.825 55.000 0.00 0.00 41.50 3.06
2330 2417 0.870307 GGTCGTCCCAATCGATGTCG 60.870 60.000 0.00 0.00 39.45 4.35
2331 2418 0.870307 GTCGTCCCAATCGATGTCGG 60.870 60.000 0.00 0.00 39.45 4.79
2332 2419 2.237751 CGTCCCAATCGATGTCGGC 61.238 63.158 0.00 0.00 40.29 5.54
2333 2420 1.887707 GTCCCAATCGATGTCGGCC 60.888 63.158 0.00 0.00 40.29 6.13
2334 2421 2.063979 TCCCAATCGATGTCGGCCT 61.064 57.895 0.00 0.00 40.29 5.19
2335 2422 1.595382 CCCAATCGATGTCGGCCTC 60.595 63.158 0.00 0.00 40.29 4.70
2336 2423 1.951130 CCAATCGATGTCGGCCTCG 60.951 63.158 8.49 8.49 40.29 4.63
2337 2424 1.226974 CAATCGATGTCGGCCTCGT 60.227 57.895 14.24 0.86 40.29 4.18
2338 2425 1.065928 AATCGATGTCGGCCTCGTC 59.934 57.895 14.24 8.98 40.29 4.20
2339 2426 1.384989 AATCGATGTCGGCCTCGTCT 61.385 55.000 14.24 1.11 40.29 4.18
2340 2427 1.384989 ATCGATGTCGGCCTCGTCTT 61.385 55.000 14.24 0.00 40.29 3.01
2341 2428 1.153823 CGATGTCGGCCTCGTCTTT 60.154 57.895 6.54 0.00 37.69 2.52
2342 2429 1.140407 CGATGTCGGCCTCGTCTTTC 61.140 60.000 6.54 0.00 37.69 2.62
2343 2430 0.108804 GATGTCGGCCTCGTCTTTCA 60.109 55.000 0.00 0.00 37.69 2.69
2344 2431 0.389948 ATGTCGGCCTCGTCTTTCAC 60.390 55.000 0.00 0.00 37.69 3.18
2345 2432 1.737008 GTCGGCCTCGTCTTTCACC 60.737 63.158 0.00 0.00 37.69 4.02
2346 2433 2.204461 TCGGCCTCGTCTTTCACCA 61.204 57.895 0.00 0.00 37.69 4.17
2347 2434 1.301401 CGGCCTCGTCTTTCACCAA 60.301 57.895 0.00 0.00 0.00 3.67
2348 2435 1.291877 CGGCCTCGTCTTTCACCAAG 61.292 60.000 0.00 0.00 0.00 3.61
2349 2436 0.250338 GGCCTCGTCTTTCACCAAGT 60.250 55.000 0.00 0.00 33.66 3.16
2350 2437 1.149148 GCCTCGTCTTTCACCAAGTC 58.851 55.000 0.00 0.00 33.66 3.01
2351 2438 1.797025 CCTCGTCTTTCACCAAGTCC 58.203 55.000 0.00 0.00 33.66 3.85
2352 2439 1.419374 CTCGTCTTTCACCAAGTCCG 58.581 55.000 0.00 0.00 33.66 4.79
2353 2440 1.000607 CTCGTCTTTCACCAAGTCCGA 60.001 52.381 0.00 0.00 36.34 4.55
2354 2441 1.409790 TCGTCTTTCACCAAGTCCGAA 59.590 47.619 0.00 0.00 35.47 4.30
2355 2442 1.525619 CGTCTTTCACCAAGTCCGAAC 59.474 52.381 0.00 0.00 32.86 3.95
2356 2443 2.802057 CGTCTTTCACCAAGTCCGAACT 60.802 50.000 0.00 0.00 37.32 3.01
2357 2444 3.551454 CGTCTTTCACCAAGTCCGAACTA 60.551 47.826 0.00 0.00 33.48 2.24
2358 2445 4.566987 GTCTTTCACCAAGTCCGAACTAT 58.433 43.478 0.00 0.00 33.48 2.12
2359 2446 4.626172 GTCTTTCACCAAGTCCGAACTATC 59.374 45.833 0.00 0.00 33.48 2.08
2360 2447 4.617530 TCTTTCACCAAGTCCGAACTATCG 60.618 45.833 0.00 0.00 40.01 2.92
2361 2448 6.779882 TCTTTCACCAAGTCCGAACTATCGA 61.780 44.000 0.00 0.00 41.43 3.59
2362 2449 8.493591 TCTTTCACCAAGTCCGAACTATCGAG 62.494 46.154 0.00 0.00 41.43 4.04
2388 2475 4.016706 CCGTCGAGGGGCCAACTT 62.017 66.667 16.51 0.00 35.97 2.66
2389 2476 2.032071 CGTCGAGGGGCCAACTTT 59.968 61.111 4.39 0.00 0.00 2.66
2390 2477 2.325082 CGTCGAGGGGCCAACTTTG 61.325 63.158 4.39 0.00 0.00 2.77
2391 2478 1.228154 GTCGAGGGGCCAACTTTGT 60.228 57.895 4.39 0.00 0.00 2.83
2392 2479 1.072505 TCGAGGGGCCAACTTTGTC 59.927 57.895 4.39 0.00 0.00 3.18
2393 2480 1.971695 CGAGGGGCCAACTTTGTCC 60.972 63.158 4.39 0.00 0.00 4.02
2394 2481 1.460699 GAGGGGCCAACTTTGTCCT 59.539 57.895 4.39 0.00 0.00 3.85
2395 2482 0.609406 GAGGGGCCAACTTTGTCCTC 60.609 60.000 4.39 4.69 33.87 3.71
2396 2483 1.606601 GGGGCCAACTTTGTCCTCC 60.607 63.158 4.39 0.00 0.00 4.30
2397 2484 1.460699 GGGCCAACTTTGTCCTCCT 59.539 57.895 4.39 0.00 0.00 3.69
2398 2485 0.609406 GGGCCAACTTTGTCCTCCTC 60.609 60.000 4.39 0.00 0.00 3.71
2399 2486 0.609406 GGCCAACTTTGTCCTCCTCC 60.609 60.000 0.00 0.00 0.00 4.30
2400 2487 0.402121 GCCAACTTTGTCCTCCTCCT 59.598 55.000 0.00 0.00 0.00 3.69
2401 2488 1.611936 GCCAACTTTGTCCTCCTCCTC 60.612 57.143 0.00 0.00 0.00 3.71
2402 2489 1.003696 CCAACTTTGTCCTCCTCCTCC 59.996 57.143 0.00 0.00 0.00 4.30
2403 2490 0.977395 AACTTTGTCCTCCTCCTCCG 59.023 55.000 0.00 0.00 0.00 4.63
2404 2491 0.178929 ACTTTGTCCTCCTCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
2405 2492 0.533032 CTTTGTCCTCCTCCTCCGTC 59.467 60.000 0.00 0.00 0.00 4.79
2406 2493 0.114560 TTTGTCCTCCTCCTCCGTCT 59.885 55.000 0.00 0.00 0.00 4.18
2407 2494 0.114560 TTGTCCTCCTCCTCCGTCTT 59.885 55.000 0.00 0.00 0.00 3.01
2408 2495 0.323542 TGTCCTCCTCCTCCGTCTTC 60.324 60.000 0.00 0.00 0.00 2.87
2409 2496 0.033894 GTCCTCCTCCTCCGTCTTCT 60.034 60.000 0.00 0.00 0.00 2.85
2410 2497 0.705253 TCCTCCTCCTCCGTCTTCTT 59.295 55.000 0.00 0.00 0.00 2.52
2411 2498 1.107945 CCTCCTCCTCCGTCTTCTTC 58.892 60.000 0.00 0.00 0.00 2.87
2412 2499 1.341581 CCTCCTCCTCCGTCTTCTTCT 60.342 57.143 0.00 0.00 0.00 2.85
2413 2500 2.452505 CTCCTCCTCCGTCTTCTTCTT 58.547 52.381 0.00 0.00 0.00 2.52
2414 2501 2.425668 CTCCTCCTCCGTCTTCTTCTTC 59.574 54.545 0.00 0.00 0.00 2.87
2415 2502 2.041891 TCCTCCTCCGTCTTCTTCTTCT 59.958 50.000 0.00 0.00 0.00 2.85
2416 2503 2.425668 CCTCCTCCGTCTTCTTCTTCTC 59.574 54.545 0.00 0.00 0.00 2.87
2417 2504 2.425668 CTCCTCCGTCTTCTTCTTCTCC 59.574 54.545 0.00 0.00 0.00 3.71
2418 2505 2.041891 TCCTCCGTCTTCTTCTTCTCCT 59.958 50.000 0.00 0.00 0.00 3.69
2419 2506 2.425668 CCTCCGTCTTCTTCTTCTCCTC 59.574 54.545 0.00 0.00 0.00 3.71
2420 2507 3.352648 CTCCGTCTTCTTCTTCTCCTCT 58.647 50.000 0.00 0.00 0.00 3.69
2421 2508 3.761752 CTCCGTCTTCTTCTTCTCCTCTT 59.238 47.826 0.00 0.00 0.00 2.85
2422 2509 4.153411 TCCGTCTTCTTCTTCTCCTCTTT 58.847 43.478 0.00 0.00 0.00 2.52
2423 2510 4.218852 TCCGTCTTCTTCTTCTCCTCTTTC 59.781 45.833 0.00 0.00 0.00 2.62
2424 2511 4.021894 CCGTCTTCTTCTTCTCCTCTTTCA 60.022 45.833 0.00 0.00 0.00 2.69
2425 2512 4.920927 CGTCTTCTTCTTCTCCTCTTTCAC 59.079 45.833 0.00 0.00 0.00 3.18
2426 2513 5.234752 GTCTTCTTCTTCTCCTCTTTCACC 58.765 45.833 0.00 0.00 0.00 4.02
2427 2514 5.011635 GTCTTCTTCTTCTCCTCTTTCACCT 59.988 44.000 0.00 0.00 0.00 4.00
2428 2515 5.245075 TCTTCTTCTTCTCCTCTTTCACCTC 59.755 44.000 0.00 0.00 0.00 3.85
2429 2516 3.835395 TCTTCTTCTCCTCTTTCACCTCC 59.165 47.826 0.00 0.00 0.00 4.30
2430 2517 3.551635 TCTTCTCCTCTTTCACCTCCT 57.448 47.619 0.00 0.00 0.00 3.69
2431 2518 3.863086 TCTTCTCCTCTTTCACCTCCTT 58.137 45.455 0.00 0.00 0.00 3.36
2432 2519 4.235372 TCTTCTCCTCTTTCACCTCCTTT 58.765 43.478 0.00 0.00 0.00 3.11
2433 2520 5.403512 TCTTCTCCTCTTTCACCTCCTTTA 58.596 41.667 0.00 0.00 0.00 1.85
2434 2521 6.026186 TCTTCTCCTCTTTCACCTCCTTTAT 58.974 40.000 0.00 0.00 0.00 1.40
2435 2522 5.941555 TCTCCTCTTTCACCTCCTTTATC 57.058 43.478 0.00 0.00 0.00 1.75
2436 2523 4.717280 TCTCCTCTTTCACCTCCTTTATCC 59.283 45.833 0.00 0.00 0.00 2.59
2437 2524 4.699994 TCCTCTTTCACCTCCTTTATCCT 58.300 43.478 0.00 0.00 0.00 3.24
2438 2525 4.471386 TCCTCTTTCACCTCCTTTATCCTG 59.529 45.833 0.00 0.00 0.00 3.86
2439 2526 4.195416 CTCTTTCACCTCCTTTATCCTGC 58.805 47.826 0.00 0.00 0.00 4.85
2440 2527 3.846588 TCTTTCACCTCCTTTATCCTGCT 59.153 43.478 0.00 0.00 0.00 4.24
2441 2528 3.914426 TTCACCTCCTTTATCCTGCTC 57.086 47.619 0.00 0.00 0.00 4.26
2442 2529 2.832838 TCACCTCCTTTATCCTGCTCA 58.167 47.619 0.00 0.00 0.00 4.26
2443 2530 2.768527 TCACCTCCTTTATCCTGCTCAG 59.231 50.000 0.00 0.00 0.00 3.35
2444 2531 1.488393 ACCTCCTTTATCCTGCTCAGC 59.512 52.381 0.00 0.00 0.00 4.26
2445 2532 1.539929 CCTCCTTTATCCTGCTCAGCG 60.540 57.143 0.00 0.00 0.00 5.18
2446 2533 1.410517 CTCCTTTATCCTGCTCAGCGA 59.589 52.381 0.00 0.00 0.00 4.93
2447 2534 1.137086 TCCTTTATCCTGCTCAGCGAC 59.863 52.381 0.00 0.00 0.00 5.19
2448 2535 1.203928 CTTTATCCTGCTCAGCGACG 58.796 55.000 0.00 0.00 0.00 5.12
2449 2536 0.806102 TTTATCCTGCTCAGCGACGC 60.806 55.000 13.03 13.03 0.00 5.19
2450 2537 1.944234 TTATCCTGCTCAGCGACGCA 61.944 55.000 23.70 0.28 34.54 5.24
2451 2538 1.738346 TATCCTGCTCAGCGACGCAT 61.738 55.000 23.70 6.43 35.32 4.73
2452 2539 1.738346 ATCCTGCTCAGCGACGCATA 61.738 55.000 23.70 8.33 35.32 3.14
2453 2540 1.948138 CCTGCTCAGCGACGCATAG 60.948 63.158 23.70 18.65 35.32 2.23
2454 2541 1.064783 CTGCTCAGCGACGCATAGA 59.935 57.895 23.70 15.20 35.32 1.98
2455 2542 0.526310 CTGCTCAGCGACGCATAGAA 60.526 55.000 23.70 12.06 35.32 2.10
2456 2543 0.802222 TGCTCAGCGACGCATAGAAC 60.802 55.000 23.70 12.27 0.00 3.01
2457 2544 0.526524 GCTCAGCGACGCATAGAACT 60.527 55.000 23.70 0.00 0.00 3.01
2458 2545 1.471964 CTCAGCGACGCATAGAACTC 58.528 55.000 23.70 0.00 0.00 3.01
2459 2546 0.248094 TCAGCGACGCATAGAACTCG 60.248 55.000 23.70 0.00 0.00 4.18
2460 2547 0.523546 CAGCGACGCATAGAACTCGT 60.524 55.000 23.70 0.00 39.33 4.18
2461 2548 1.012086 AGCGACGCATAGAACTCGTA 58.988 50.000 23.70 0.00 36.50 3.43
2462 2549 1.110876 GCGACGCATAGAACTCGTAC 58.889 55.000 16.42 0.00 36.50 3.67
2463 2550 1.267932 GCGACGCATAGAACTCGTACT 60.268 52.381 16.42 0.00 36.50 2.73
2464 2551 2.626892 CGACGCATAGAACTCGTACTC 58.373 52.381 0.00 0.00 36.50 2.59
2465 2552 2.599377 CGACGCATAGAACTCGTACTCC 60.599 54.545 0.00 0.00 36.50 3.85
2466 2553 1.329906 ACGCATAGAACTCGTACTCCG 59.670 52.381 0.00 0.00 34.41 4.63
2467 2554 1.756367 GCATAGAACTCGTACTCCGC 58.244 55.000 0.00 0.00 36.19 5.54
2468 2555 1.599916 GCATAGAACTCGTACTCCGCC 60.600 57.143 0.00 0.00 36.19 6.13
2469 2556 1.948145 CATAGAACTCGTACTCCGCCT 59.052 52.381 0.00 0.00 36.19 5.52
2470 2557 1.376543 TAGAACTCGTACTCCGCCTG 58.623 55.000 0.00 0.00 36.19 4.85
2471 2558 1.516603 GAACTCGTACTCCGCCTGC 60.517 63.158 0.00 0.00 36.19 4.85
2472 2559 2.209064 GAACTCGTACTCCGCCTGCA 62.209 60.000 0.00 0.00 36.19 4.41
2473 2560 2.202623 CTCGTACTCCGCCTGCAC 60.203 66.667 0.00 0.00 36.19 4.57
2474 2561 4.111016 TCGTACTCCGCCTGCACG 62.111 66.667 0.00 0.00 36.19 5.34
2475 2562 4.111016 CGTACTCCGCCTGCACGA 62.111 66.667 0.00 0.00 34.66 4.35
2476 2563 2.202623 GTACTCCGCCTGCACGAG 60.203 66.667 0.00 2.59 34.06 4.18
2477 2564 3.449227 TACTCCGCCTGCACGAGG 61.449 66.667 0.00 0.00 46.13 4.63
2490 2577 2.888513 CACGAGGTGCTGATTTTCTG 57.111 50.000 0.00 0.00 0.00 3.02
2491 2578 2.416747 CACGAGGTGCTGATTTTCTGA 58.583 47.619 0.00 0.00 0.00 3.27
2492 2579 2.158449 CACGAGGTGCTGATTTTCTGAC 59.842 50.000 0.00 0.00 0.00 3.51
2493 2580 1.391485 CGAGGTGCTGATTTTCTGACG 59.609 52.381 0.00 0.00 0.00 4.35
2494 2581 1.129437 GAGGTGCTGATTTTCTGACGC 59.871 52.381 0.00 0.00 0.00 5.19
2495 2582 0.874390 GGTGCTGATTTTCTGACGCA 59.126 50.000 0.00 0.00 0.00 5.24
2496 2583 1.266718 GGTGCTGATTTTCTGACGCAA 59.733 47.619 0.00 0.00 0.00 4.85
2497 2584 2.287547 GGTGCTGATTTTCTGACGCAAA 60.288 45.455 0.00 0.00 0.00 3.68
2498 2585 2.721090 GTGCTGATTTTCTGACGCAAAC 59.279 45.455 0.00 0.00 0.00 2.93
2499 2586 2.287547 TGCTGATTTTCTGACGCAAACC 60.288 45.455 0.00 0.00 0.00 3.27
2500 2587 2.030805 GCTGATTTTCTGACGCAAACCT 60.031 45.455 0.00 0.00 0.00 3.50
2501 2588 3.814945 CTGATTTTCTGACGCAAACCTC 58.185 45.455 0.00 0.00 0.00 3.85
2502 2589 3.210227 TGATTTTCTGACGCAAACCTCA 58.790 40.909 0.00 0.00 0.00 3.86
2503 2590 3.003275 TGATTTTCTGACGCAAACCTCAC 59.997 43.478 0.00 0.00 0.00 3.51
2504 2591 2.325583 TTTCTGACGCAAACCTCACT 57.674 45.000 0.00 0.00 0.00 3.41
2587 2677 2.145865 CCCACCAGGCCCAGTATAG 58.854 63.158 0.00 0.00 0.00 1.31
2588 2678 0.399949 CCCACCAGGCCCAGTATAGA 60.400 60.000 0.00 0.00 0.00 1.98
2590 2680 1.417890 CCACCAGGCCCAGTATAGAAG 59.582 57.143 0.00 0.00 0.00 2.85
2621 2719 0.251386 AGAGGCGTCAGAGACCTTCA 60.251 55.000 9.41 0.00 32.67 3.02
2638 2736 4.404073 ACCTTCATGCTCTCGAAGACTAAT 59.596 41.667 0.00 0.00 40.94 1.73
2666 2766 1.135546 CGCCCTAGATCGCATCTACTG 60.136 57.143 0.00 0.19 40.76 2.74
2730 2832 1.475930 GGCAACCCTCTTGGCTATCTC 60.476 57.143 0.00 0.00 41.17 2.75
2742 2846 7.225784 TCTTGGCTATCTCATCTCAGATAAC 57.774 40.000 0.00 0.00 35.39 1.89
2760 2865 2.279582 ACAACTCTCGGTAGCAATCG 57.720 50.000 0.00 0.00 0.00 3.34
2862 2970 0.546598 AAGGCCCGAACCTGGATAAG 59.453 55.000 0.00 0.00 39.93 1.73
2893 3001 3.131400 GCAACCTCCGATCTAAGACTTCT 59.869 47.826 0.00 0.00 0.00 2.85
2897 3005 3.187637 CCTCCGATCTAAGACTTCTAGCG 59.812 52.174 0.00 0.00 0.00 4.26
2908 3016 2.564553 CTTCTAGCGGCGCTTGGACT 62.565 60.000 40.77 17.63 40.44 3.85
2927 3035 2.512896 ACTCCTACCGAGGGATCTAACA 59.487 50.000 0.00 0.00 43.94 2.41
3128 3238 1.202110 ACGCACAATCTACGTCGGTAG 60.202 52.381 0.00 0.00 46.16 3.18
3132 3242 1.470098 ACAATCTACGTCGGTAGCGTT 59.530 47.619 14.79 2.81 44.74 4.84
3173 3283 1.805945 GCGACCTCTAACTGTGCCG 60.806 63.158 0.00 0.00 0.00 5.69
3189 3299 1.496403 GCCGACCACCTATTTAGCGC 61.496 60.000 0.00 0.00 0.00 5.92
3196 3306 0.030369 ACCTATTTAGCGCGAGACGG 59.970 55.000 12.10 2.16 43.93 4.79
3201 3311 4.889112 TAGCGCGAGACGGGGGAT 62.889 66.667 12.10 0.00 43.93 3.85
3205 3315 2.521224 GCGAGACGGGGGATAGGT 60.521 66.667 0.00 0.00 0.00 3.08
3206 3316 2.132352 GCGAGACGGGGGATAGGTT 61.132 63.158 0.00 0.00 0.00 3.50
3207 3317 1.683418 GCGAGACGGGGGATAGGTTT 61.683 60.000 0.00 0.00 0.00 3.27
3209 3319 1.790818 GAGACGGGGGATAGGTTTCT 58.209 55.000 0.00 0.00 0.00 2.52
3216 3326 2.640332 GGGGGATAGGTTTCTGATCTCC 59.360 54.545 0.00 0.00 39.22 3.71
3220 3330 1.471119 TAGGTTTCTGATCTCCGCGT 58.529 50.000 4.92 0.00 0.00 6.01
3224 3334 0.895530 TTTCTGATCTCCGCGTCCTT 59.104 50.000 4.92 0.00 0.00 3.36
3241 3351 1.406477 CCTTACCGTCTGGCCTAAACC 60.406 57.143 3.32 0.00 39.70 3.27
3251 3361 1.451567 GCCTAAACCGCCTCTTCCC 60.452 63.158 0.00 0.00 0.00 3.97
3259 3369 2.901042 GCCTCTTCCCGTTCGGAT 59.099 61.111 13.08 0.00 41.63 4.18
3260 3370 1.221021 GCCTCTTCCCGTTCGGATT 59.779 57.895 13.08 0.00 41.63 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.816087 GAGAGAAGCAAAACTCATGCCA 59.184 45.455 0.00 0.00 44.91 4.92
112 113 2.290641 GTGTTGGCAAGATCTTCAACGT 59.709 45.455 24.08 0.00 41.45 3.99
143 144 2.738139 TGCACCGCATCACGTGAG 60.738 61.111 24.41 16.12 41.42 3.51
218 234 1.096386 ATTCCTCGTCCTCGTCCTCG 61.096 60.000 0.00 0.00 38.33 4.63
219 235 1.964552 TATTCCTCGTCCTCGTCCTC 58.035 55.000 0.00 0.00 38.33 3.71
220 236 2.431954 TTATTCCTCGTCCTCGTCCT 57.568 50.000 0.00 0.00 38.33 3.85
221 237 2.361438 ACATTATTCCTCGTCCTCGTCC 59.639 50.000 0.00 0.00 38.33 4.79
222 238 3.181489 ACACATTATTCCTCGTCCTCGTC 60.181 47.826 0.00 0.00 38.33 4.20
223 239 2.758979 ACACATTATTCCTCGTCCTCGT 59.241 45.455 0.00 0.00 38.33 4.18
238 254 7.099266 TCAAGACACAAATGAAAGACACATT 57.901 32.000 0.00 0.00 39.25 2.71
290 306 3.233507 AGTTCATGCCCACAAGTTCATT 58.766 40.909 0.00 0.00 0.00 2.57
399 417 3.133691 CGCCGAGGCATTGCATATATAT 58.866 45.455 15.03 0.00 42.06 0.86
400 418 2.167487 TCGCCGAGGCATTGCATATATA 59.833 45.455 15.03 0.00 42.06 0.86
464 491 2.809696 ACAGCCGCGTTAAAATGTAACT 59.190 40.909 4.92 0.00 0.00 2.24
467 494 2.095668 CCAACAGCCGCGTTAAAATGTA 60.096 45.455 4.92 0.00 0.00 2.29
468 495 1.335506 CCAACAGCCGCGTTAAAATGT 60.336 47.619 4.92 0.00 0.00 2.71
499 528 2.671276 TGATTTTGCGCGGCCTCA 60.671 55.556 8.83 0.09 0.00 3.86
523 552 0.595567 AACTAGTTTGTCGCGCGTCA 60.596 50.000 30.98 27.89 0.00 4.35
588 617 9.904198 TGGTGAATCTTATTGACTCATAATGAA 57.096 29.630 0.00 0.00 33.29 2.57
593 622 9.685276 ACAAATGGTGAATCTTATTGACTCATA 57.315 29.630 0.00 0.00 33.29 2.15
594 623 8.585471 ACAAATGGTGAATCTTATTGACTCAT 57.415 30.769 0.00 0.00 33.29 2.90
595 624 7.148423 CGACAAATGGTGAATCTTATTGACTCA 60.148 37.037 0.00 0.00 0.00 3.41
596 625 7.064609 TCGACAAATGGTGAATCTTATTGACTC 59.935 37.037 0.00 0.00 0.00 3.36
597 626 6.878923 TCGACAAATGGTGAATCTTATTGACT 59.121 34.615 0.00 0.00 0.00 3.41
598 627 7.072177 TCGACAAATGGTGAATCTTATTGAC 57.928 36.000 0.00 0.00 0.00 3.18
599 628 7.680442 TTCGACAAATGGTGAATCTTATTGA 57.320 32.000 0.00 0.00 0.00 2.57
600 629 8.741101 TTTTCGACAAATGGTGAATCTTATTG 57.259 30.769 0.00 0.00 0.00 1.90
646 675 4.573607 GTCTTGTATACGAACAAATCCCCC 59.426 45.833 0.00 0.00 38.81 5.40
647 676 4.269363 CGTCTTGTATACGAACAAATCCCC 59.731 45.833 0.00 0.00 42.90 4.81
648 677 5.104374 TCGTCTTGTATACGAACAAATCCC 58.896 41.667 0.00 0.00 45.62 3.85
674 703 0.250295 TCTTCTTCAAGCCACCACGG 60.250 55.000 0.00 0.00 38.11 4.94
675 704 0.868406 GTCTTCTTCAAGCCACCACG 59.132 55.000 0.00 0.00 0.00 4.94
677 706 2.092429 AGTTGTCTTCTTCAAGCCACCA 60.092 45.455 0.00 0.00 0.00 4.17
686 715 4.752604 GTCTTCCTCCAAGTTGTCTTCTTC 59.247 45.833 1.45 0.00 33.27 2.87
689 718 3.071747 AGGTCTTCCTCCAAGTTGTCTTC 59.928 47.826 1.45 0.00 40.58 2.87
690 719 3.049344 AGGTCTTCCTCCAAGTTGTCTT 58.951 45.455 1.45 0.00 40.58 3.01
704 733 4.016444 TGTGCATTTTATGGGAGGTCTTC 58.984 43.478 0.00 0.00 0.00 2.87
706 735 3.356290 GTGTGCATTTTATGGGAGGTCT 58.644 45.455 0.00 0.00 0.00 3.85
710 739 2.159393 CCACGTGTGCATTTTATGGGAG 60.159 50.000 15.65 0.00 0.00 4.30
718 747 1.816224 GATTACCCCACGTGTGCATTT 59.184 47.619 15.65 0.00 0.00 2.32
721 750 1.374885 CGATTACCCCACGTGTGCA 60.375 57.895 15.65 0.00 0.00 4.57
723 752 2.449525 CGCGATTACCCCACGTGTG 61.450 63.158 15.65 2.09 33.77 3.82
731 760 2.526120 GCTGCAGACGCGATTACCC 61.526 63.158 20.43 0.00 42.97 3.69
743 772 0.390866 ACGAGTGGAAGATGCTGCAG 60.391 55.000 10.11 10.11 0.00 4.41
761 790 0.380378 TTGAACTCGTGCTGCCAAAC 59.620 50.000 0.00 0.00 0.00 2.93
855 884 0.526524 GCGGTCGATCAGTCTTGAGG 60.527 60.000 0.00 0.00 36.61 3.86
894 927 1.210885 AAGCAGGGGAGAAGGAAGGG 61.211 60.000 0.00 0.00 0.00 3.95
900 933 0.914644 TGGATGAAGCAGGGGAGAAG 59.085 55.000 0.00 0.00 0.00 2.85
942 975 1.374758 GCGGAGTGAGTGTTGGAGG 60.375 63.158 0.00 0.00 0.00 4.30
960 993 5.383130 AGCTCGTACATATATATATGCGCG 58.617 41.667 26.04 26.41 42.98 6.86
991 1025 0.456824 TGAGTGAAGATGCGCTCGAC 60.457 55.000 9.73 4.15 45.87 4.20
1024 1066 3.001330 CGCGGTCTTGGTCTTTATCAATC 59.999 47.826 0.00 0.00 0.00 2.67
1051 1093 1.135139 CTCGGACTCCTGTACCATGTG 59.865 57.143 0.00 0.00 0.00 3.21
1062 1104 4.500116 GCGGACTGCTCGGACTCC 62.500 72.222 0.00 0.00 41.73 3.85
1203 1248 1.139734 GAGGAAGATGAGCGCGACA 59.860 57.895 12.10 9.96 0.00 4.35
1204 1249 1.590259 GGAGGAAGATGAGCGCGAC 60.590 63.158 12.10 2.99 0.00 5.19
1419 1495 4.787280 CTGGCCTCCTCCCCGTCT 62.787 72.222 3.32 0.00 0.00 4.18
1714 1796 2.108514 CGATCACCAGCATTGCCGT 61.109 57.895 4.70 0.00 0.00 5.68
1720 1802 1.807755 CGGAATGTCGATCACCAGCAT 60.808 52.381 0.00 0.00 0.00 3.79
1791 1873 1.188219 TCAAAGACCTCAGCCTCGCT 61.188 55.000 0.00 0.00 40.77 4.93
1818 1900 2.866085 CTTGCCTCCCGAAGCTCCAG 62.866 65.000 0.00 0.00 0.00 3.86
1877 1959 1.373748 GTGTCCGCTGTTCCGCTAA 60.374 57.895 0.00 0.00 0.00 3.09
1890 1972 3.105283 ACTAATACCCTGGTCTGTGTCC 58.895 50.000 0.00 0.00 0.00 4.02
1911 1993 2.637382 TCTTGGAGTTGCACAGGTGATA 59.363 45.455 3.10 0.00 0.00 2.15
1949 2031 3.494332 GTCCTAGGTAATTCCGGCTCTA 58.506 50.000 9.08 0.00 41.99 2.43
1950 2032 2.317973 GTCCTAGGTAATTCCGGCTCT 58.682 52.381 9.08 0.00 41.99 4.09
1966 2048 3.208884 GACTGTGGTCGCACGTCCT 62.209 63.158 7.77 0.00 32.47 3.85
1976 2058 1.915769 GAGGGAGGCAGACTGTGGT 60.916 63.158 3.99 0.00 0.00 4.16
1978 2060 2.664081 GGGAGGGAGGCAGACTGTG 61.664 68.421 3.99 0.00 0.00 3.66
1979 2061 2.284995 GGGAGGGAGGCAGACTGT 60.285 66.667 3.99 0.00 0.00 3.55
1983 2065 1.306482 CTCTTGGGAGGGAGGCAGA 60.306 63.158 0.00 0.00 36.03 4.26
2086 2173 5.351948 AAAACTACTTTTTGTGTGCCCAT 57.648 34.783 0.00 0.00 35.98 4.00
2115 2202 8.640651 TGAGATGATGGAAAATTCACTTTTTGA 58.359 29.630 0.00 0.00 37.18 2.69
2152 2239 8.250332 GCCCTATTTTTACATCATCTGTTGAAA 58.750 33.333 0.00 0.00 39.39 2.69
2194 2281 5.945466 TCGTGCCTAATATACGTCACATA 57.055 39.130 0.00 0.00 38.80 2.29
2201 2288 6.519353 TGATGTTTTCGTGCCTAATATACG 57.481 37.500 0.00 0.00 39.04 3.06
2209 2296 3.791973 TGTTTTGATGTTTTCGTGCCT 57.208 38.095 0.00 0.00 0.00 4.75
2245 2332 9.260002 GGAACTATGTTTGAAATTGTCATGTTT 57.740 29.630 0.00 0.00 35.70 2.83
2272 2359 8.352942 AGTTTCTGGTCAAACAATCTTTGTATC 58.647 33.333 0.00 0.00 44.59 2.24
2280 2367 6.861065 TGAGTAGTTTCTGGTCAAACAATC 57.139 37.500 0.00 0.00 38.53 2.67
2281 2368 6.998074 TGATGAGTAGTTTCTGGTCAAACAAT 59.002 34.615 0.00 0.00 38.53 2.71
2282 2369 6.353323 TGATGAGTAGTTTCTGGTCAAACAA 58.647 36.000 0.00 0.00 38.53 2.83
2283 2370 5.924356 TGATGAGTAGTTTCTGGTCAAACA 58.076 37.500 0.00 0.00 38.53 2.83
2284 2371 6.223852 TCTGATGAGTAGTTTCTGGTCAAAC 58.776 40.000 0.00 0.00 36.64 2.93
2285 2372 6.419484 TCTGATGAGTAGTTTCTGGTCAAA 57.581 37.500 0.00 0.00 0.00 2.69
2286 2373 6.030548 CTCTGATGAGTAGTTTCTGGTCAA 57.969 41.667 0.00 0.00 35.67 3.18
2287 2374 5.651387 CTCTGATGAGTAGTTTCTGGTCA 57.349 43.478 0.00 0.00 35.67 4.02
2300 2387 0.457851 GGGACGACCACTCTGATGAG 59.542 60.000 6.20 0.00 45.43 2.90
2301 2388 0.251608 TGGGACGACCACTCTGATGA 60.252 55.000 6.20 0.00 46.80 2.92
2302 2389 2.276869 TGGGACGACCACTCTGATG 58.723 57.895 6.20 0.00 46.80 3.07
2303 2390 4.865629 TGGGACGACCACTCTGAT 57.134 55.556 6.20 0.00 46.80 2.90
2310 2397 3.474520 CGACATCGATTGGGACGACCA 62.475 57.143 6.20 2.62 45.25 4.02
2311 2398 0.870307 CGACATCGATTGGGACGACC 60.870 60.000 0.00 0.00 42.37 4.79
2312 2399 0.870307 CCGACATCGATTGGGACGAC 60.870 60.000 2.09 0.00 42.37 4.34
2313 2400 1.435925 CCGACATCGATTGGGACGA 59.564 57.895 2.09 0.00 43.02 4.20
2314 2401 2.237751 GCCGACATCGATTGGGACG 61.238 63.158 2.09 5.05 43.02 4.79
2315 2402 1.887707 GGCCGACATCGATTGGGAC 60.888 63.158 2.09 3.65 43.02 4.46
2316 2403 2.028125 GAGGCCGACATCGATTGGGA 62.028 60.000 2.09 0.00 43.02 4.37
2317 2404 1.595382 GAGGCCGACATCGATTGGG 60.595 63.158 2.09 0.00 43.02 4.12
2318 2405 1.951130 CGAGGCCGACATCGATTGG 60.951 63.158 0.00 0.00 41.40 3.16
2319 2406 1.209275 GACGAGGCCGACATCGATTG 61.209 60.000 13.75 0.00 41.40 2.67
2320 2407 1.065928 GACGAGGCCGACATCGATT 59.934 57.895 13.75 0.00 41.40 3.34
2321 2408 1.384989 AAGACGAGGCCGACATCGAT 61.385 55.000 13.75 0.00 41.40 3.59
2322 2409 1.592400 AAAGACGAGGCCGACATCGA 61.592 55.000 13.75 0.00 41.40 3.59
2323 2410 1.140407 GAAAGACGAGGCCGACATCG 61.140 60.000 3.76 3.76 44.36 3.84
2324 2411 0.108804 TGAAAGACGAGGCCGACATC 60.109 55.000 0.00 0.00 39.50 3.06
2325 2412 0.389948 GTGAAAGACGAGGCCGACAT 60.390 55.000 0.00 0.00 39.50 3.06
2326 2413 1.006571 GTGAAAGACGAGGCCGACA 60.007 57.895 0.00 0.00 39.50 4.35
2327 2414 1.737008 GGTGAAAGACGAGGCCGAC 60.737 63.158 0.00 0.00 39.50 4.79
2328 2415 1.750341 TTGGTGAAAGACGAGGCCGA 61.750 55.000 0.00 0.00 39.50 5.54
2329 2416 1.291877 CTTGGTGAAAGACGAGGCCG 61.292 60.000 0.00 0.00 38.24 6.13
2330 2417 0.250338 ACTTGGTGAAAGACGAGGCC 60.250 55.000 0.00 0.00 39.38 5.19
2331 2418 1.149148 GACTTGGTGAAAGACGAGGC 58.851 55.000 0.00 0.00 39.38 4.70
2332 2419 1.797025 GGACTTGGTGAAAGACGAGG 58.203 55.000 0.00 0.00 39.38 4.63
2333 2420 1.000607 TCGGACTTGGTGAAAGACGAG 60.001 52.381 0.00 0.00 40.83 4.18
2334 2421 1.034356 TCGGACTTGGTGAAAGACGA 58.966 50.000 0.00 5.87 42.23 4.20
2335 2422 1.525619 GTTCGGACTTGGTGAAAGACG 59.474 52.381 0.00 0.00 39.38 4.18
2336 2423 2.835027 AGTTCGGACTTGGTGAAAGAC 58.165 47.619 0.00 0.00 39.38 3.01
2337 2424 4.617530 CGATAGTTCGGACTTGGTGAAAGA 60.618 45.833 0.00 0.00 41.74 2.52
2338 2425 3.612860 CGATAGTTCGGACTTGGTGAAAG 59.387 47.826 0.00 0.00 41.74 2.62
2339 2426 3.256383 TCGATAGTTCGGACTTGGTGAAA 59.744 43.478 0.00 0.00 45.53 2.69
2340 2427 2.821378 TCGATAGTTCGGACTTGGTGAA 59.179 45.455 0.00 0.00 45.53 3.18
2341 2428 2.422479 CTCGATAGTTCGGACTTGGTGA 59.578 50.000 0.00 0.00 45.53 4.02
2342 2429 2.422479 TCTCGATAGTTCGGACTTGGTG 59.578 50.000 0.00 0.00 45.53 4.17
2343 2430 2.719739 TCTCGATAGTTCGGACTTGGT 58.280 47.619 0.00 0.00 45.53 3.67
2344 2431 3.436496 GTTCTCGATAGTTCGGACTTGG 58.564 50.000 0.00 0.00 45.53 3.61
2345 2432 3.099362 CGTTCTCGATAGTTCGGACTTG 58.901 50.000 0.00 0.00 45.53 3.16
2346 2433 3.005554 TCGTTCTCGATAGTTCGGACTT 58.994 45.455 0.00 0.00 45.53 3.01
2347 2434 2.625737 TCGTTCTCGATAGTTCGGACT 58.374 47.619 0.00 0.00 45.53 3.85
2371 2458 3.546714 AAAGTTGGCCCCTCGACGG 62.547 63.158 0.00 0.00 0.00 4.79
2372 2459 2.032071 AAAGTTGGCCCCTCGACG 59.968 61.111 0.00 0.00 0.00 5.12
2373 2460 1.228154 ACAAAGTTGGCCCCTCGAC 60.228 57.895 0.00 0.00 0.00 4.20
2374 2461 1.072505 GACAAAGTTGGCCCCTCGA 59.927 57.895 0.00 0.00 0.00 4.04
2375 2462 3.668386 GACAAAGTTGGCCCCTCG 58.332 61.111 0.00 0.00 0.00 4.63
2381 2468 0.402121 AGGAGGAGGACAAAGTTGGC 59.598 55.000 0.00 0.00 34.70 4.52
2382 2469 1.003696 GGAGGAGGAGGACAAAGTTGG 59.996 57.143 0.00 0.00 0.00 3.77
2383 2470 1.338200 CGGAGGAGGAGGACAAAGTTG 60.338 57.143 0.00 0.00 0.00 3.16
2384 2471 0.977395 CGGAGGAGGAGGACAAAGTT 59.023 55.000 0.00 0.00 0.00 2.66
2385 2472 0.178929 ACGGAGGAGGAGGACAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
2386 2473 0.533032 GACGGAGGAGGAGGACAAAG 59.467 60.000 0.00 0.00 0.00 2.77
2387 2474 0.114560 AGACGGAGGAGGAGGACAAA 59.885 55.000 0.00 0.00 0.00 2.83
2388 2475 0.114560 AAGACGGAGGAGGAGGACAA 59.885 55.000 0.00 0.00 0.00 3.18
2389 2476 0.323542 GAAGACGGAGGAGGAGGACA 60.324 60.000 0.00 0.00 0.00 4.02
2390 2477 0.033894 AGAAGACGGAGGAGGAGGAC 60.034 60.000 0.00 0.00 0.00 3.85
2391 2478 0.705253 AAGAAGACGGAGGAGGAGGA 59.295 55.000 0.00 0.00 0.00 3.71
2392 2479 1.107945 GAAGAAGACGGAGGAGGAGG 58.892 60.000 0.00 0.00 0.00 4.30
2393 2480 2.137810 AGAAGAAGACGGAGGAGGAG 57.862 55.000 0.00 0.00 0.00 3.69
2394 2481 2.041891 AGAAGAAGAAGACGGAGGAGGA 59.958 50.000 0.00 0.00 0.00 3.71
2395 2482 2.425668 GAGAAGAAGAAGACGGAGGAGG 59.574 54.545 0.00 0.00 0.00 4.30
2396 2483 2.425668 GGAGAAGAAGAAGACGGAGGAG 59.574 54.545 0.00 0.00 0.00 3.69
2397 2484 2.041891 AGGAGAAGAAGAAGACGGAGGA 59.958 50.000 0.00 0.00 0.00 3.71
2398 2485 2.425668 GAGGAGAAGAAGAAGACGGAGG 59.574 54.545 0.00 0.00 0.00 4.30
2399 2486 3.352648 AGAGGAGAAGAAGAAGACGGAG 58.647 50.000 0.00 0.00 0.00 4.63
2400 2487 3.443145 AGAGGAGAAGAAGAAGACGGA 57.557 47.619 0.00 0.00 0.00 4.69
2401 2488 4.021894 TGAAAGAGGAGAAGAAGAAGACGG 60.022 45.833 0.00 0.00 0.00 4.79
2402 2489 4.920927 GTGAAAGAGGAGAAGAAGAAGACG 59.079 45.833 0.00 0.00 0.00 4.18
2403 2490 5.011635 AGGTGAAAGAGGAGAAGAAGAAGAC 59.988 44.000 0.00 0.00 0.00 3.01
2404 2491 5.151454 AGGTGAAAGAGGAGAAGAAGAAGA 58.849 41.667 0.00 0.00 0.00 2.87
2405 2492 5.478407 GAGGTGAAAGAGGAGAAGAAGAAG 58.522 45.833 0.00 0.00 0.00 2.85
2406 2493 4.284746 GGAGGTGAAAGAGGAGAAGAAGAA 59.715 45.833 0.00 0.00 0.00 2.52
2407 2494 3.835395 GGAGGTGAAAGAGGAGAAGAAGA 59.165 47.826 0.00 0.00 0.00 2.87
2408 2495 3.837731 AGGAGGTGAAAGAGGAGAAGAAG 59.162 47.826 0.00 0.00 0.00 2.85
2409 2496 3.863086 AGGAGGTGAAAGAGGAGAAGAA 58.137 45.455 0.00 0.00 0.00 2.52
2410 2497 3.551635 AGGAGGTGAAAGAGGAGAAGA 57.448 47.619 0.00 0.00 0.00 2.87
2411 2498 4.632327 AAAGGAGGTGAAAGAGGAGAAG 57.368 45.455 0.00 0.00 0.00 2.85
2412 2499 5.189934 GGATAAAGGAGGTGAAAGAGGAGAA 59.810 44.000 0.00 0.00 0.00 2.87
2413 2500 4.717280 GGATAAAGGAGGTGAAAGAGGAGA 59.283 45.833 0.00 0.00 0.00 3.71
2414 2501 4.719273 AGGATAAAGGAGGTGAAAGAGGAG 59.281 45.833 0.00 0.00 0.00 3.69
2415 2502 4.471386 CAGGATAAAGGAGGTGAAAGAGGA 59.529 45.833 0.00 0.00 0.00 3.71
2416 2503 4.775236 CAGGATAAAGGAGGTGAAAGAGG 58.225 47.826 0.00 0.00 0.00 3.69
2417 2504 4.080638 AGCAGGATAAAGGAGGTGAAAGAG 60.081 45.833 0.00 0.00 0.00 2.85
2418 2505 3.846588 AGCAGGATAAAGGAGGTGAAAGA 59.153 43.478 0.00 0.00 0.00 2.52
2419 2506 4.195416 GAGCAGGATAAAGGAGGTGAAAG 58.805 47.826 0.00 0.00 0.00 2.62
2420 2507 3.587061 TGAGCAGGATAAAGGAGGTGAAA 59.413 43.478 0.00 0.00 0.00 2.69
2421 2508 3.181329 TGAGCAGGATAAAGGAGGTGAA 58.819 45.455 0.00 0.00 0.00 3.18
2422 2509 2.768527 CTGAGCAGGATAAAGGAGGTGA 59.231 50.000 0.00 0.00 0.00 4.02
2423 2510 2.744494 GCTGAGCAGGATAAAGGAGGTG 60.744 54.545 0.00 0.00 0.00 4.00
2424 2511 1.488393 GCTGAGCAGGATAAAGGAGGT 59.512 52.381 0.00 0.00 0.00 3.85
2425 2512 1.539929 CGCTGAGCAGGATAAAGGAGG 60.540 57.143 4.88 0.00 0.00 4.30
2426 2513 1.410517 TCGCTGAGCAGGATAAAGGAG 59.589 52.381 4.88 0.00 0.00 3.69
2427 2514 1.137086 GTCGCTGAGCAGGATAAAGGA 59.863 52.381 4.88 0.00 0.00 3.36
2428 2515 1.576356 GTCGCTGAGCAGGATAAAGG 58.424 55.000 4.88 0.00 0.00 3.11
2429 2516 1.203928 CGTCGCTGAGCAGGATAAAG 58.796 55.000 4.88 0.00 0.00 1.85
2430 2517 0.806102 GCGTCGCTGAGCAGGATAAA 60.806 55.000 10.68 0.00 0.00 1.40
2431 2518 1.226974 GCGTCGCTGAGCAGGATAA 60.227 57.895 10.68 0.00 0.00 1.75
2432 2519 2.413351 GCGTCGCTGAGCAGGATA 59.587 61.111 10.68 0.00 0.00 2.59
2433 2520 3.763356 TGCGTCGCTGAGCAGGAT 61.763 61.111 19.50 0.00 38.59 3.24
2438 2525 0.526524 AGTTCTATGCGTCGCTGAGC 60.527 55.000 19.50 14.73 0.00 4.26
2439 2526 1.471964 GAGTTCTATGCGTCGCTGAG 58.528 55.000 19.50 14.84 0.00 3.35
2440 2527 0.248094 CGAGTTCTATGCGTCGCTGA 60.248 55.000 19.50 11.01 0.00 4.26
2441 2528 0.523546 ACGAGTTCTATGCGTCGCTG 60.524 55.000 19.50 8.79 35.83 5.18
2442 2529 1.012086 TACGAGTTCTATGCGTCGCT 58.988 50.000 19.50 6.60 39.24 4.93
2443 2530 1.110876 GTACGAGTTCTATGCGTCGC 58.889 55.000 11.10 11.10 39.24 5.19
2444 2531 2.599377 GGAGTACGAGTTCTATGCGTCG 60.599 54.545 0.00 0.00 39.24 5.12
2445 2532 2.984458 GGAGTACGAGTTCTATGCGTC 58.016 52.381 0.00 0.00 39.24 5.19
2457 2544 4.111016 CGTGCAGGCGGAGTACGA 62.111 66.667 0.00 0.00 45.83 3.43
2458 2545 4.111016 TCGTGCAGGCGGAGTACG 62.111 66.667 0.35 10.69 44.62 3.67
2459 2546 2.202623 CTCGTGCAGGCGGAGTAC 60.203 66.667 0.35 0.00 0.00 2.73
2460 2547 3.449227 CCTCGTGCAGGCGGAGTA 61.449 66.667 9.85 0.00 34.56 2.59
2471 2558 2.158449 GTCAGAAAATCAGCACCTCGTG 59.842 50.000 0.00 0.00 36.51 4.35
2472 2559 2.417719 GTCAGAAAATCAGCACCTCGT 58.582 47.619 0.00 0.00 0.00 4.18
2473 2560 1.391485 CGTCAGAAAATCAGCACCTCG 59.609 52.381 0.00 0.00 0.00 4.63
2474 2561 1.129437 GCGTCAGAAAATCAGCACCTC 59.871 52.381 0.00 0.00 0.00 3.85
2475 2562 1.160137 GCGTCAGAAAATCAGCACCT 58.840 50.000 0.00 0.00 0.00 4.00
2476 2563 0.874390 TGCGTCAGAAAATCAGCACC 59.126 50.000 0.00 0.00 0.00 5.01
2477 2564 2.686558 TTGCGTCAGAAAATCAGCAC 57.313 45.000 0.00 0.00 34.13 4.40
2478 2565 2.287547 GGTTTGCGTCAGAAAATCAGCA 60.288 45.455 0.00 0.00 0.00 4.41
2479 2566 2.030805 AGGTTTGCGTCAGAAAATCAGC 60.031 45.455 0.00 0.00 28.00 4.26
2480 2567 3.250762 TGAGGTTTGCGTCAGAAAATCAG 59.749 43.478 0.00 0.00 34.95 2.90
2481 2568 3.003275 GTGAGGTTTGCGTCAGAAAATCA 59.997 43.478 0.00 0.00 39.76 2.57
2482 2569 3.251004 AGTGAGGTTTGCGTCAGAAAATC 59.749 43.478 0.00 0.00 39.76 2.17
2483 2570 3.214328 AGTGAGGTTTGCGTCAGAAAAT 58.786 40.909 0.00 0.00 39.76 1.82
2484 2571 2.639065 AGTGAGGTTTGCGTCAGAAAA 58.361 42.857 0.00 0.00 39.76 2.29
2485 2572 2.325583 AGTGAGGTTTGCGTCAGAAA 57.674 45.000 0.00 0.00 39.76 2.52
2486 2573 3.678056 ATAGTGAGGTTTGCGTCAGAA 57.322 42.857 0.00 0.00 39.76 3.02
2487 2574 3.006430 TCAATAGTGAGGTTTGCGTCAGA 59.994 43.478 0.00 0.00 39.76 3.27
2488 2575 3.123621 GTCAATAGTGAGGTTTGCGTCAG 59.876 47.826 0.00 0.00 39.76 3.51
2489 2576 3.064207 GTCAATAGTGAGGTTTGCGTCA 58.936 45.455 0.00 0.00 37.19 4.35
2490 2577 2.092211 CGTCAATAGTGAGGTTTGCGTC 59.908 50.000 4.77 0.00 35.38 5.19
2491 2578 2.066262 CGTCAATAGTGAGGTTTGCGT 58.934 47.619 4.77 0.00 35.38 5.24
2492 2579 1.393539 CCGTCAATAGTGAGGTTTGCG 59.606 52.381 11.45 2.37 37.85 4.85
2493 2580 2.159627 CACCGTCAATAGTGAGGTTTGC 59.840 50.000 11.45 0.00 37.85 3.68
2494 2581 3.399330 ACACCGTCAATAGTGAGGTTTG 58.601 45.455 11.45 10.12 37.85 2.93
2495 2582 3.556423 GGACACCGTCAATAGTGAGGTTT 60.556 47.826 11.45 6.23 37.85 3.27
2496 2583 2.028385 GGACACCGTCAATAGTGAGGTT 60.028 50.000 11.45 0.00 37.85 3.50
2497 2584 1.549170 GGACACCGTCAATAGTGAGGT 59.451 52.381 11.45 9.63 37.85 3.85
2498 2585 1.825474 AGGACACCGTCAATAGTGAGG 59.175 52.381 5.92 5.92 39.00 3.86
2499 2586 3.442625 TGTAGGACACCGTCAATAGTGAG 59.557 47.826 0.00 0.00 37.43 3.51
2500 2587 3.192001 GTGTAGGACACCGTCAATAGTGA 59.808 47.826 0.00 0.00 43.05 3.41
2501 2588 3.508762 GTGTAGGACACCGTCAATAGTG 58.491 50.000 0.00 0.00 43.05 2.74
2502 2589 3.863142 GTGTAGGACACCGTCAATAGT 57.137 47.619 0.00 0.00 43.05 2.12
2524 2611 1.695597 CCCTTGGAGAGCCATCCCT 60.696 63.158 2.49 0.00 45.46 4.20
2574 2664 2.103153 TCCCTTCTATACTGGGCCTG 57.897 55.000 9.11 9.11 40.69 4.85
2590 2680 1.153147 CGCCTCTTTAGGGCTTCCC 60.153 63.158 3.25 0.00 46.73 3.97
2621 2719 4.555708 CGCTACATTAGTCTTCGAGAGCAT 60.556 45.833 0.00 0.00 0.00 3.79
2638 2736 2.520982 ATCTAGGGCGCCGCTACA 60.521 61.111 22.54 11.12 0.00 2.74
2666 2766 2.158798 GGAGGTCTAGGGTTTACATGGC 60.159 54.545 0.00 0.00 0.00 4.40
2730 2832 5.255710 ACCGAGAGTTGTTATCTGAGATG 57.744 43.478 4.96 0.00 0.00 2.90
2742 2846 0.924090 GCGATTGCTACCGAGAGTTG 59.076 55.000 0.00 0.00 38.39 3.16
2760 2865 3.012934 AGGGGTTACAATGGTGTATGC 57.987 47.619 0.00 0.00 39.96 3.14
2862 2970 2.360475 GGAGGTTGCACAGAGGGC 60.360 66.667 0.00 0.00 0.00 5.19
2893 3001 4.143333 GGAGTCCAAGCGCCGCTA 62.143 66.667 14.02 0.00 38.25 4.26
2897 3005 2.187163 GGTAGGAGTCCAAGCGCC 59.813 66.667 12.86 1.93 0.00 6.53
2927 3035 2.612972 CCAACTGACGGTGCAGAATACT 60.613 50.000 12.45 0.00 39.20 2.12
2966 3074 4.832823 TCCAAGATCAATCTATAGCCGACA 59.167 41.667 0.00 0.00 35.76 4.35
2975 3084 6.723515 AGAAGATCCGATCCAAGATCAATCTA 59.276 38.462 14.82 0.00 41.16 1.98
3086 3196 4.218686 GGTGGGCCAGTGGGTTGT 62.219 66.667 6.40 0.00 36.17 3.32
3128 3238 2.485795 TTGGTGGTGAAGGCAACGC 61.486 57.895 0.00 0.00 41.48 4.84
3132 3242 2.904866 GCGTTGGTGGTGAAGGCA 60.905 61.111 0.00 0.00 34.94 4.75
3173 3283 1.066605 TCTCGCGCTAAATAGGTGGTC 59.933 52.381 5.56 0.00 0.00 4.02
3189 3299 0.388294 GAAACCTATCCCCCGTCTCG 59.612 60.000 0.00 0.00 0.00 4.04
3195 3305 2.640332 GGAGATCAGAAACCTATCCCCC 59.360 54.545 0.00 0.00 0.00 5.40
3196 3306 2.300437 CGGAGATCAGAAACCTATCCCC 59.700 54.545 0.00 0.00 0.00 4.81
3201 3311 1.404391 GACGCGGAGATCAGAAACCTA 59.596 52.381 12.47 0.00 0.00 3.08
3205 3315 0.895530 AAGGACGCGGAGATCAGAAA 59.104 50.000 12.47 0.00 0.00 2.52
3206 3316 1.404391 GTAAGGACGCGGAGATCAGAA 59.596 52.381 12.47 0.00 0.00 3.02
3207 3317 1.022735 GTAAGGACGCGGAGATCAGA 58.977 55.000 12.47 0.00 0.00 3.27
3209 3319 1.721664 CGGTAAGGACGCGGAGATCA 61.722 60.000 12.47 0.00 0.00 2.92
3216 3326 2.202570 CCAGACGGTAAGGACGCG 60.203 66.667 3.53 3.53 34.00 6.01
3220 3330 1.551883 GTTTAGGCCAGACGGTAAGGA 59.448 52.381 5.01 0.00 33.28 3.36
3224 3334 1.892338 CGGTTTAGGCCAGACGGTA 59.108 57.895 5.01 0.00 33.28 4.02
3241 3351 3.755628 TCCGAACGGGAAGAGGCG 61.756 66.667 13.29 0.00 43.62 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.