AutoCloner

Multiple sequence alignment - TraesCS7A01G351200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G351200	chr7A	100.000	2903	0	0	1	2903	514701188	514704090	0.000000e+00	5361.0
1	TraesCS7A01G351200	chr7A	96.986	730	21	1	1	729	691520304	691521033	0.000000e+00	1225.0
2	TraesCS7A01G351200	chr7A	88.253	332	35	4	1	330	285688184	285687855	7.540000e-106	394.0
3	TraesCS7A01G351200	chr7D	91.885	1220	81	9	726	1940	418949180	418947974	0.000000e+00	1688.0
4	TraesCS7A01G351200	chr7D	86.626	329	40	4	1	327	263000819	263000493	7.650000e-96	361.0
5	TraesCS7A01G351200	chr7B	92.132	1182	82	4	760	1937	434831720	434830546	0.000000e+00	1657.0
6	TraesCS7A01G351200	chr7B	88.095	126	7	4	987	1111	434833209	434833091	3.020000e-30	143.0
7	TraesCS7A01G351200	chr2A	96.832	726	21	2	1	725	445580702	445581426	0.000000e+00	1212.0
8	TraesCS7A01G351200	chr6D	93.669	695	41	3	2211	2903	71018189	71018882	0.000000e+00	1037.0
9	TraesCS7A01G351200	chr6D	94.576	295	15	1	1956	2250	71017888	71018181	3.410000e-124	455.0
10	TraesCS7A01G351200	chr5B	92.230	695	50	4	2211	2903	50560016	50560708	0.000000e+00	981.0
11	TraesCS7A01G351200	chr5B	88.838	654	57	5	2212	2857	496586151	496585506	0.000000e+00	789.0
12	TraesCS7A01G351200	chr5B	91.349	289	24	1	1962	2250	50559721	50560008	7.540000e-106	394.0
13	TraesCS7A01G351200	chr5B	91.724	290	14	4	1965	2250	496586445	496586162	7.540000e-106	394.0
14	TraesCS7A01G351200	chr5B	100.000	36	0	0	2868	2903	496585526	496585491	1.870000e-07	67.6
15	TraesCS7A01G351200	chr4A	89.110	652	55	5	2211	2854	731667592	731668235	0.000000e+00	797.0
16	TraesCS7A01G351200	chr4A	92.440	291	12	4	1964	2250	731667298	731667582	9.680000e-110	407.0
17	TraesCS7A01G351200	chr4A	72.861	409	66	25	2118	2508	558673316	558672935	6.620000e-17	99.0
18	TraesCS7A01G351200	chr4A	75.610	205	37	6	2315	2509	558671832	558671631	3.980000e-14	89.8
19	TraesCS7A01G351200	chr4A	100.000	36	0	0	2868	2903	731668218	731668253	1.870000e-07	67.6
20	TraesCS7A01G351200	chr4A	97.368	38	1	0	2039	2076	731667335	731667372	6.710000e-07	65.8
21	TraesCS7A01G351200	chr5D	86.059	746	63	24	7	738	482655988	482655270	0.000000e+00	763.0
22	TraesCS7A01G351200	chr3A	81.020	922	123	36	1009	1904	51408916	51408021	0.000000e+00	686.0
23	TraesCS7A01G351200	chr3B	79.654	924	138	36	1009	1907	63399455	63398557	1.140000e-173	619.0
24	TraesCS7A01G351200	chr3D	79.501	922	143	32	1009	1907	39621263	39620365	5.320000e-172	614.0
25	TraesCS7A01G351200	chr5A	89.474	114	12	0	1	114	705997773	705997886	8.380000e-31	145.0
26	TraesCS7A01G351200	chr5A	80.556	144	25	3	2117	2258	451397188	451397330	1.100000e-19	108.0
27	TraesCS7A01G351200	chr4B	78.363	171	33	4	2091	2258	358817125	358816956	1.100000e-19	108.0
28	TraesCS7A01G351200	chr6A	81.373	102	16	2	2315	2416	390095168	390095070	2.400000e-11	80.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G351200	chr7A	514701188	514704090	2902	False	5361.000000	5361	100.000000	1	2903	1	chr7A.!!$F1	2902
1	TraesCS7A01G351200	chr7A	691520304	691521033	729	False	1225.000000	1225	96.986000	1	729	1	chr7A.!!$F2	728
2	TraesCS7A01G351200	chr7D	418947974	418949180	1206	True	1688.000000	1688	91.885000	726	1940	1	chr7D.!!$R2	1214
3	TraesCS7A01G351200	chr7B	434830546	434833209	2663	True	900.000000	1657	90.113500	760	1937	2	chr7B.!!$R1	1177
4	TraesCS7A01G351200	chr2A	445580702	445581426	724	False	1212.000000	1212	96.832000	1	725	1	chr2A.!!$F1	724
5	TraesCS7A01G351200	chr6D	71017888	71018882	994	False	746.000000	1037	94.122500	1956	2903	2	chr6D.!!$F1	947
6	TraesCS7A01G351200	chr5B	50559721	50560708	987	False	687.500000	981	91.789500	1962	2903	2	chr5B.!!$F1	941
7	TraesCS7A01G351200	chr5B	496585491	496586445	954	True	416.866667	789	93.520667	1965	2903	3	chr5B.!!$R1	938
8	TraesCS7A01G351200	chr4A	731667298	731668253	955	False	334.350000	797	94.729500	1964	2903	4	chr4A.!!$F1	939
9	TraesCS7A01G351200	chr5D	482655270	482655988	718	True	763.000000	763	86.059000	7	738	1	chr5D.!!$R1	731
10	TraesCS7A01G351200	chr3A	51408021	51408916	895	True	686.000000	686	81.020000	1009	1904	1	chr3A.!!$R1	895
11	TraesCS7A01G351200	chr3B	63398557	63399455	898	True	619.000000	619	79.654000	1009	1907	1	chr3B.!!$R1	898
12	TraesCS7A01G351200	chr3D	39620365	39621263	898	True	614.000000	614	79.501000	1009	1907	1	chr3D.!!$R1	898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
587	598	0.249280	CCCGAAAGCCCAACAACAAC	60.249	55.0	0.0	0.0	0.00	3.32	F
1151	1889	0.662374	ACGAACATGTCCGTCGTCAC	60.662	55.0	16.3	0.0	33.23	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1714	2470	0.320073	TCCCAATCACGAACACCGAC	60.320	55.0	0.00	0.00	41.76	4.79	R
1971	2730	0.722848	GTGGCAACGTACGGGTATTG	59.277	55.0	21.06	15.28	42.51	1.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	3.567585	TCATGAACCACTCAAAATCGCAA	59.432	39.130	0.00	0.00	37.67	4.85
368	379	3.204418	GCCTCCAGCAATCAAGGC	58.796	61.111	0.00	0.00	46.76	4.35
562	573	1.072505	GACTGAGGGCGGAAAACCA	59.927	57.895	0.00	0.00	0.00	3.67
587	598	0.249280	CCCGAAAGCCCAACAACAAC	60.249	55.000	0.00	0.00	0.00	3.32
752	764	7.907214	AAAATTTGTAGCTAGTCCACTAGTG	57.093	36.000	16.34	16.34	45.85	2.74
753	765	6.607004	AATTTGTAGCTAGTCCACTAGTGT	57.393	37.500	21.18	5.94	45.85	3.55
754	766	7.713734	AATTTGTAGCTAGTCCACTAGTGTA	57.286	36.000	21.18	2.56	45.85	2.90
756	768	5.432680	TGTAGCTAGTCCACTAGTGTACT	57.567	43.478	22.75	22.75	45.85	2.73
757	769	5.426504	TGTAGCTAGTCCACTAGTGTACTC	58.573	45.833	22.81	11.07	45.85	2.59
758	770	3.888583	AGCTAGTCCACTAGTGTACTCC	58.111	50.000	22.81	15.37	45.85	3.85
759	771	3.524380	AGCTAGTCCACTAGTGTACTCCT	59.476	47.826	22.81	17.10	45.85	3.69
760	772	4.720773	AGCTAGTCCACTAGTGTACTCCTA	59.279	45.833	22.81	12.34	45.85	2.94
761	773	5.370289	AGCTAGTCCACTAGTGTACTCCTAT	59.630	44.000	22.81	6.97	45.85	2.57
763	775	5.979656	AGTCCACTAGTGTACTCCTATCT	57.020	43.478	21.18	0.00	0.00	1.98
824	1555	1.896220	TCAGCTGGAAACACATGACC	58.104	50.000	15.13	0.00	35.60	4.02
833	1564	5.200483	TGGAAACACATGACCTTTCTTCTT	58.800	37.500	0.00	0.00	33.40	2.52
835	1566	6.831353	TGGAAACACATGACCTTTCTTCTTTA	59.169	34.615	0.00	0.00	33.40	1.85
853	1584	9.653287	TCTTCTTTATGTTTGACCAGTATACTG	57.347	33.333	23.58	23.58	43.40	2.74
919	1654	4.320870	CTGTATAAAACCCCTCACAACGT	58.679	43.478	0.00	0.00	0.00	3.99
920	1655	4.317488	TGTATAAAACCCCTCACAACGTC	58.683	43.478	0.00	0.00	0.00	4.34
921	1656	3.495434	ATAAAACCCCTCACAACGTCA	57.505	42.857	0.00	0.00	0.00	4.35
922	1657	2.131776	AAAACCCCTCACAACGTCAA	57.868	45.000	0.00	0.00	0.00	3.18
923	1658	1.385528	AAACCCCTCACAACGTCAAC	58.614	50.000	0.00	0.00	0.00	3.18
924	1659	0.812412	AACCCCTCACAACGTCAACG	60.812	55.000	0.12	0.12	46.33	4.10
950	1685	2.169769	TGCTTCTACCCGAATACCCAAG	59.830	50.000	0.00	0.00	0.00	3.61
999	1734	4.035558	CACGTATCACCATAAGCTGCAAAT	59.964	41.667	1.02	0.00	0.00	2.32
1151	1889	0.662374	ACGAACATGTCCGTCGTCAC	60.662	55.000	16.30	0.00	33.23	3.67
1172	1910	2.511145	GGCAGCGCTCCTCTTCAG	60.511	66.667	7.13	0.00	0.00	3.02
1176	1914	4.087892	GCGCTCCTCTTCAGGCCA	62.088	66.667	5.01	0.00	40.12	5.36
1184	1922	1.901654	CTCTTCAGGCCAGAGCAGCT	61.902	60.000	5.01	0.00	42.56	4.24
1191	1929	2.684843	GCCAGAGCAGCTGTTTCCG	61.685	63.158	16.64	6.13	43.33	4.30
1232	1976	0.700564	TTTCTGCTGCTCCCCAAGAT	59.299	50.000	0.00	0.00	0.00	2.40
1312	2062	1.901650	GAGCTTCACGGTGGAAAGCG	61.902	60.000	21.56	0.00	0.00	4.68
1372	2122	3.047877	CGACGCTCAACAACCCCC	61.048	66.667	0.00	0.00	0.00	5.40
1484	2240	4.544689	CGCGCCAGAGTCTCCGAG	62.545	72.222	12.56	6.51	0.00	4.63
1564	2320	2.201708	TGGGTCGAGTACAACGCCA	61.202	57.895	18.56	13.52	0.00	5.69
1575	2331	1.803922	CAACGCCATCGAGCACGTA	60.804	57.895	9.40	0.00	37.87	3.57
1576	2332	1.516386	AACGCCATCGAGCACGTAG	60.516	57.895	9.40	0.00	37.87	3.51
1738	2494	0.037697	TGTTCGTGATTGGGACCTCG	60.038	55.000	0.00	0.00	0.00	4.63
1776	2535	1.741770	CGACGGCAAGAAGAAGGGG	60.742	63.158	0.00	0.00	0.00	4.79
1848	2607	2.125326	CGCCATCGTCTCCCTGGTA	61.125	63.158	0.00	0.00	32.42	3.25
1907	2666	4.141711	TGTGGATCCCAAGCAATAGTCTAC	60.142	45.833	9.90	0.00	34.18	2.59
1912	2671	3.197766	TCCCAAGCAATAGTCTACACAGG	59.802	47.826	0.00	0.00	0.00	4.00
1917	2676	2.939103	GCAATAGTCTACACAGGCTTGG	59.061	50.000	0.00	0.00	37.97	3.61
1918	2677	3.535561	CAATAGTCTACACAGGCTTGGG	58.464	50.000	0.00	0.00	37.97	4.12
1941	2700	4.935630	CGTGTAGACGTCTGTGCA	57.064	55.556	28.12	19.44	40.91	4.57
1942	2701	3.173247	CGTGTAGACGTCTGTGCAA	57.827	52.632	28.12	4.38	40.91	4.08
1943	2702	1.053048	CGTGTAGACGTCTGTGCAAG	58.947	55.000	28.12	19.61	40.91	4.01
1944	2703	0.784778	GTGTAGACGTCTGTGCAAGC	59.215	55.000	28.12	9.30	0.00	4.01
1945	2704	0.673985	TGTAGACGTCTGTGCAAGCT	59.326	50.000	28.12	0.45	0.00	3.74
1946	2705	1.883926	TGTAGACGTCTGTGCAAGCTA	59.116	47.619	28.12	1.06	0.00	3.32
1947	2706	2.251893	GTAGACGTCTGTGCAAGCTAC	58.748	52.381	28.12	10.80	0.00	3.58
1948	2707	0.962489	AGACGTCTGTGCAAGCTACT	59.038	50.000	19.30	0.00	0.00	2.57
1949	2708	1.068194	AGACGTCTGTGCAAGCTACTC	60.068	52.381	19.30	0.00	0.00	2.59
1950	2709	0.962489	ACGTCTGTGCAAGCTACTCT	59.038	50.000	0.00	0.00	0.00	3.24
1951	2710	1.336332	ACGTCTGTGCAAGCTACTCTG	60.336	52.381	0.00	0.00	0.00	3.35
1952	2711	1.336332	CGTCTGTGCAAGCTACTCTGT	60.336	52.381	0.00	0.00	0.00	3.41
1953	2712	2.760374	GTCTGTGCAAGCTACTCTGTT	58.240	47.619	0.00	0.00	0.00	3.16
1954	2713	3.134458	GTCTGTGCAAGCTACTCTGTTT	58.866	45.455	0.00	0.00	0.00	2.83
1981	2740	9.806448	TTATGTTATACTAGTCCAATACCCGTA	57.194	33.333	0.00	0.00	0.00	4.02
2134	2897	5.922544	CGGTTGCAAATCTTCATCTTTCTTT	59.077	36.000	0.00	0.00	0.00	2.52
2197	2960	1.068885	CGTCTCTCCGCTATAGCAAGG	60.069	57.143	23.99	17.37	42.21	3.61
2258	3069	5.123502	GTGCATGTTCACATTTCTCTCTGAT	59.876	40.000	0.00	0.00	36.97	2.90
2264	3075	4.825422	TCACATTTCTCTCTGATGTGTCC	58.175	43.478	13.44	0.00	46.59	4.02
2279	3090	0.395312	TGTCCCTTCTTCGTCCAACC	59.605	55.000	0.00	0.00	0.00	3.77
2303	3114	7.227910	ACCTTATTTGCTTCGTTTCTCAAACTA	59.772	33.333	0.00	0.00	39.23	2.24
2356	3167	1.470890	GCAACAATTAGCAACGCCCTA	59.529	47.619	0.00	0.00	0.00	3.53
2358	3169	3.498082	CAACAATTAGCAACGCCCTAAC	58.502	45.455	0.00	0.00	0.00	2.34
2530	3341	7.348201	GTCATCTCACATTTTATTCATCGGAC	58.652	38.462	0.00	0.00	0.00	4.79
2537	3348	8.183536	TCACATTTTATTCATCGGACAGAATTG	58.816	33.333	11.33	7.46	36.07	2.32
2545	3356	5.592054	TCATCGGACAGAATTGTACATCTC	58.408	41.667	0.00	0.00	38.10	2.75
2548	3359	4.338400	TCGGACAGAATTGTACATCTCGAT	59.662	41.667	0.00	0.00	38.10	3.59
2564	3375	8.839310	ACATCTCGATAGGAATCTATTTTTGG	57.161	34.615	0.00	0.00	36.40	3.28
2660	3471	4.589216	TGCCAATCAAGACAAGGAAAAG	57.411	40.909	0.00	0.00	0.00	2.27
2676	3487	8.037166	ACAAGGAAAAGGAGATCATAAATTTGC	58.963	33.333	0.00	0.00	0.00	3.68
2727	3545	4.147321	ACAAGTTCTGAATTGTGGAGCAT	58.853	39.130	13.58	0.00	38.19	3.79
2751	3569	4.342951	TGACGAGATAATTTGGTCCGGTAT	59.657	41.667	0.00	0.00	0.00	2.73
2844	3694	7.270757	ACATAACACATTGTTGAAGTAGCAA	57.729	32.000	1.73	0.00	41.30	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
367	378	4.899239	CGGAGATGGAGCGTGGGC	62.899	72.222	0.00	0.00	40.37	5.36
368	379	4.899239	GCGGAGATGGAGCGTGGG	62.899	72.222	0.00	0.00	0.00	4.61
562	573	0.822121	GTTGGGCTTTCGGGTTCACT	60.822	55.000	0.00	0.00	0.00	3.41
742	754	6.120905	TCAAGATAGGAGTACACTAGTGGAC	58.879	44.000	27.98	27.98	44.70	4.02
744	756	7.285629	TCAATCAAGATAGGAGTACACTAGTGG	59.714	40.741	26.12	9.07	34.19	4.00
746	758	8.855110	CATCAATCAAGATAGGAGTACACTAGT	58.145	37.037	0.00	0.00	0.00	2.57
748	760	8.996651	TCATCAATCAAGATAGGAGTACACTA	57.003	34.615	0.00	0.00	0.00	2.74
749	761	7.904558	TCATCAATCAAGATAGGAGTACACT	57.095	36.000	0.00	0.00	0.00	3.55
751	763	9.770097	GAAATCATCAATCAAGATAGGAGTACA	57.230	33.333	0.00	0.00	0.00	2.90
752	764	9.995003	AGAAATCATCAATCAAGATAGGAGTAC	57.005	33.333	0.00	0.00	0.00	2.73
758	770	9.591404	GCGTTAAGAAATCATCAATCAAGATAG	57.409	33.333	0.00	0.00	0.00	2.08
759	771	8.559536	GGCGTTAAGAAATCATCAATCAAGATA	58.440	33.333	0.00	0.00	0.00	1.98
760	772	7.284034	AGGCGTTAAGAAATCATCAATCAAGAT	59.716	33.333	0.00	0.00	0.00	2.40
761	773	6.599244	AGGCGTTAAGAAATCATCAATCAAGA	59.401	34.615	0.00	0.00	0.00	3.02
763	775	6.150976	ACAGGCGTTAAGAAATCATCAATCAA	59.849	34.615	0.00	0.00	0.00	2.57
816	1547	8.352201	TCAAACATAAAGAAGAAAGGTCATGTG	58.648	33.333	0.00	0.00	0.00	3.21
853	1584	2.550180	GTCAAGAAAGGACAACAGGAGC	59.450	50.000	0.00	0.00	35.36	4.70
899	1630	4.317488	TGACGTTGTGAGGGGTTTTATAC	58.683	43.478	0.00	0.00	0.00	1.47
919	1654	1.438651	GGTAGAAGCATGCACGTTGA	58.561	50.000	21.98	0.00	0.00	3.18
920	1655	0.447801	GGGTAGAAGCATGCACGTTG	59.552	55.000	21.98	0.00	0.00	4.10
921	1656	1.019278	CGGGTAGAAGCATGCACGTT	61.019	55.000	21.98	5.25	0.00	3.99
922	1657	1.447838	CGGGTAGAAGCATGCACGT	60.448	57.895	21.98	4.09	0.00	4.49
923	1658	0.739462	TTCGGGTAGAAGCATGCACG	60.739	55.000	21.98	11.88	34.26	5.34
924	1659	1.668419	ATTCGGGTAGAAGCATGCAC	58.332	50.000	21.98	13.47	42.92	4.57
931	1666	4.202192	GGTACTTGGGTATTCGGGTAGAAG	60.202	50.000	0.00	0.00	42.92	2.85
950	1685	4.553938	CGTCTGTTGTTTGTGATTGGGTAC	60.554	45.833	0.00	0.00	0.00	3.34
1128	1866	1.495951	GACGGACATGTTCGTTGCC	59.504	57.895	31.66	16.55	39.88	4.52
1131	1869	0.031043	TGACGACGGACATGTTCGTT	59.969	50.000	31.66	18.28	39.88	3.85
1176	1914	1.294780	CTCCGGAAACAGCTGCTCT	59.705	57.895	15.27	0.00	0.00	4.09
1184	1922	0.531090	CACGTTGACCTCCGGAAACA	60.531	55.000	15.23	8.73	0.00	2.83
1191	1929	1.080705	CTCGGACACGTTGACCTCC	60.081	63.158	0.00	0.00	41.85	4.30
1275	2025	2.027625	CGTGTTGAAGGACGCCTCC	61.028	63.158	0.00	0.00	36.71	4.30
1707	2463	0.708370	CACGAACACCGACGAAGATG	59.292	55.000	0.00	0.00	41.76	2.90
1714	2470	0.320073	TCCCAATCACGAACACCGAC	60.320	55.000	0.00	0.00	41.76	4.79
1776	2535	3.009192	TATCACCCACCACGGCGTC	62.009	63.158	10.85	0.00	0.00	5.19
1842	2601	1.072331	ACAAAGGAGCACACTACCAGG	59.928	52.381	0.00	0.00	0.00	4.45
1848	2607	2.093973	CCTCGATACAAAGGAGCACACT	60.094	50.000	0.00	0.00	34.35	3.55
1885	2644	3.567478	AGACTATTGCTTGGGATCCAC	57.433	47.619	15.23	3.53	30.78	4.02
1890	2649	3.197766	CCTGTGTAGACTATTGCTTGGGA	59.802	47.826	0.00	0.00	0.00	4.37
1907	2666	2.693762	CGCACATCCCAAGCCTGTG	61.694	63.158	0.00	0.00	42.44	3.66
1912	2671	0.391130	TCTACACGCACATCCCAAGC	60.391	55.000	0.00	0.00	0.00	4.01
1934	2693	3.475566	AAACAGAGTAGCTTGCACAGA	57.524	42.857	0.00	0.00	0.00	3.41
1935	2694	4.558538	AAAAACAGAGTAGCTTGCACAG	57.441	40.909	0.00	0.00	0.00	3.66
1936	2695	5.530915	ACATAAAAACAGAGTAGCTTGCACA	59.469	36.000	0.00	0.00	0.00	4.57
1937	2696	6.002062	ACATAAAAACAGAGTAGCTTGCAC	57.998	37.500	0.00	0.00	0.00	4.57
1938	2697	6.633500	AACATAAAAACAGAGTAGCTTGCA	57.367	33.333	0.00	0.00	0.00	4.08
1939	2698	9.704098	GTATAACATAAAAACAGAGTAGCTTGC	57.296	33.333	0.00	0.00	0.00	4.01
1953	2712	9.985730	CGGGTATTGGACTAGTATAACATAAAA	57.014	33.333	0.00	0.00	0.00	1.52
1954	2713	9.146586	ACGGGTATTGGACTAGTATAACATAAA	57.853	33.333	0.00	0.00	0.00	1.40
1971	2730	0.722848	GTGGCAACGTACGGGTATTG	59.277	55.000	21.06	15.28	42.51	1.90
2013	2772	5.051106	GCACTGCAAAATGTAAACAACGAAT	60.051	36.000	0.00	0.00	0.00	3.34
2134	2897	3.958798	TGATGAGCTGAGATGAGATGTGA	59.041	43.478	0.00	0.00	0.00	3.58
2258	3069	1.124780	TTGGACGAAGAAGGGACACA	58.875	50.000	0.00	0.00	0.00	3.72
2264	3075	4.379499	GCAAATAAGGTTGGACGAAGAAGG	60.379	45.833	0.00	0.00	0.00	3.46
2279	3090	8.067784	TGTAGTTTGAGAAACGAAGCAAATAAG	58.932	33.333	0.00	0.00	45.88	1.73
2388	3199	8.522830	TGTTATCGTATAATGCTCATCTCATCA	58.477	33.333	0.00	0.00	0.00	3.07
2448	3259	1.153901	CTACGGGTGTGGTGTAGCG	60.154	63.158	0.00	0.00	30.29	4.26
2530	3341	8.303156	AGATTCCTATCGAGATGTACAATTCTG	58.697	37.037	0.00	0.00	35.85	3.02
2564	3375	6.884836	ACATAGGTTCATCCTTCCAGTTTAAC	59.115	38.462	0.00	0.00	45.67	2.01
2589	3400	7.449247	TGGTATATTATGCTTGTGATACTGCA	58.551	34.615	0.00	0.00	39.83	4.41
2660	3471	5.762825	TGCTCAGCAAATTTATGATCTCC	57.237	39.130	0.00	0.00	34.76	3.71
2676	3487	6.160684	TGACATCAAATTGGAAAATGCTCAG	58.839	36.000	0.00	0.00	0.00	3.35
2727	3545	3.055675	ACCGGACCAAATTATCTCGTCAA	60.056	43.478	9.46	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.