Multiple sequence alignment - TraesCS7A01G349200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G349200 chr7A 100.000 4597 0 0 1 4597 511951396 511946800 0.000000e+00 8490
1 TraesCS7A01G349200 chr7A 98.387 124 2 0 537 660 717823098 717822975 7.740000e-53 219
2 TraesCS7A01G349200 chr7B 89.666 4006 215 108 643 4591 437363014 437366877 0.000000e+00 4920
3 TraesCS7A01G349200 chr7B 84.694 392 23 12 110 491 437362613 437362977 1.570000e-94 357
4 TraesCS7A01G349200 chr7D 91.604 2513 107 54 643 3118 421166701 421169146 0.000000e+00 3376
5 TraesCS7A01G349200 chr7D 87.774 1505 108 43 3104 4597 421169161 421170600 0.000000e+00 1690
6 TraesCS7A01G349200 chr7D 83.763 388 23 9 110 491 421166311 421166664 9.530000e-87 331
7 TraesCS7A01G349200 chr5D 98.462 130 1 1 531 659 326131555 326131426 1.290000e-55 228
8 TraesCS7A01G349200 chr2B 96.377 138 3 2 535 671 103257521 103257385 4.630000e-55 226
9 TraesCS7A01G349200 chr2B 98.400 125 2 0 536 660 437819000 437818876 2.150000e-53 220
10 TraesCS7A01G349200 chr5A 96.350 137 3 2 527 662 51738581 51738716 1.660000e-54 224
11 TraesCS7A01G349200 chr3B 98.425 127 2 0 535 661 654654337 654654211 1.660000e-54 224
12 TraesCS7A01G349200 chr1B 98.374 123 2 0 537 659 299981706 299981584 2.790000e-52 217
13 TraesCS7A01G349200 chr1A 96.875 128 4 0 532 659 64852538 64852411 1.000000e-51 215
14 TraesCS7A01G349200 chr1A 96.850 127 4 0 537 663 56914598 56914472 3.600000e-51 213
15 TraesCS7A01G349200 chr6D 77.273 308 46 19 1944 2236 414000951 414001249 4.760000e-35 159
16 TraesCS7A01G349200 chr6A 76.721 305 53 14 1944 2236 558981583 558981881 2.210000e-33 154
17 TraesCS7A01G349200 chr6B 75.625 320 57 17 1944 2250 623740567 623740878 6.200000e-29 139
18 TraesCS7A01G349200 chr3A 76.623 231 48 3 2027 2254 623777532 623777759 6.250000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G349200 chr7A 511946800 511951396 4596 True 8490.0 8490 100.000000 1 4597 1 chr7A.!!$R1 4596
1 TraesCS7A01G349200 chr7B 437362613 437366877 4264 False 2638.5 4920 87.180000 110 4591 2 chr7B.!!$F1 4481
2 TraesCS7A01G349200 chr7D 421166311 421170600 4289 False 1799.0 3376 87.713667 110 4597 3 chr7D.!!$F1 4487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 681 0.099082 CCGTACGTCAGAGGAGCTTC 59.901 60.0 15.21 0.0 0.00 3.86 F
655 682 0.099082 CGTACGTCAGAGGAGCTTCC 59.901 60.0 7.22 0.0 36.58 3.46 F
738 765 0.463116 CCCGATTAACCCACTTCCCG 60.463 60.0 0.00 0.0 0.00 5.14 F
1070 1108 0.682855 CTCCTCTGCGTCCTCCTCTT 60.683 60.0 0.00 0.0 0.00 2.85 F
2633 2697 0.736325 CGAAAGTGGCTAGTGGTCCG 60.736 60.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2272 0.179108 GCTGGTAGAGGCCGTAGTTG 60.179 60.0 0.0 0.0 0.00 3.16 R
2613 2677 0.320697 GGACCACTAGCCACTTTCGT 59.679 55.0 0.0 0.0 0.00 3.85 R
2698 2765 1.363744 GGTGCCTTGTTGATCTCTCG 58.636 55.0 0.0 0.0 0.00 4.04 R
2744 2811 0.318107 GCGTGCTTGTGTTGCTGATT 60.318 50.0 0.0 0.0 0.00 2.57 R
3765 3873 0.107410 TAAAGGGCTACCACATGGCG 60.107 55.0 0.0 0.0 40.13 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.419076 TTTTATTTTGAAAGAAGGCAACAGAC 57.581 30.769 0.00 0.00 41.41 3.51
39 40 5.859205 ATTTTGAAAGAAGGCAACAGACT 57.141 34.783 0.00 0.00 41.41 3.24
40 41 5.659440 TTTTGAAAGAAGGCAACAGACTT 57.341 34.783 0.00 0.00 41.41 3.01
41 42 4.637483 TTGAAAGAAGGCAACAGACTTG 57.363 40.909 0.00 0.00 41.41 3.16
42 43 2.358898 TGAAAGAAGGCAACAGACTTGC 59.641 45.455 0.00 0.00 44.22 4.01
43 44 2.355010 AAGAAGGCAACAGACTTGCT 57.645 45.000 5.12 0.00 44.36 3.91
59 60 8.224169 CAGACTTGCTGTTTTCATTGATTAAG 57.776 34.615 0.00 0.00 39.85 1.85
60 61 8.077991 CAGACTTGCTGTTTTCATTGATTAAGA 58.922 33.333 0.00 0.00 39.85 2.10
61 62 8.632679 AGACTTGCTGTTTTCATTGATTAAGAA 58.367 29.630 0.00 0.00 0.00 2.52
62 63 8.807667 ACTTGCTGTTTTCATTGATTAAGAAG 57.192 30.769 0.00 0.00 0.00 2.85
63 64 8.632679 ACTTGCTGTTTTCATTGATTAAGAAGA 58.367 29.630 0.00 0.00 0.00 2.87
64 65 9.467258 CTTGCTGTTTTCATTGATTAAGAAGAA 57.533 29.630 0.00 0.00 0.00 2.52
65 66 9.467258 TTGCTGTTTTCATTGATTAAGAAGAAG 57.533 29.630 0.00 0.00 0.00 2.85
66 67 8.632679 TGCTGTTTTCATTGATTAAGAAGAAGT 58.367 29.630 0.00 0.00 0.00 3.01
67 68 8.909671 GCTGTTTTCATTGATTAAGAAGAAGTG 58.090 33.333 0.00 0.00 0.00 3.16
76 77 8.816640 TTGATTAAGAAGAAGTGAAAATTGCC 57.183 30.769 0.00 0.00 0.00 4.52
77 78 7.083858 TGATTAAGAAGAAGTGAAAATTGCCG 58.916 34.615 0.00 0.00 0.00 5.69
78 79 3.923017 AGAAGAAGTGAAAATTGCCGG 57.077 42.857 0.00 0.00 0.00 6.13
79 80 2.558359 AGAAGAAGTGAAAATTGCCGGG 59.442 45.455 2.18 0.00 0.00 5.73
80 81 1.995376 AGAAGTGAAAATTGCCGGGT 58.005 45.000 2.18 0.00 0.00 5.28
81 82 2.316108 AGAAGTGAAAATTGCCGGGTT 58.684 42.857 2.18 0.00 0.00 4.11
82 83 3.492337 AGAAGTGAAAATTGCCGGGTTA 58.508 40.909 2.18 0.00 0.00 2.85
83 84 3.892588 AGAAGTGAAAATTGCCGGGTTAA 59.107 39.130 2.18 0.00 0.00 2.01
84 85 4.526650 AGAAGTGAAAATTGCCGGGTTAAT 59.473 37.500 2.18 0.00 0.00 1.40
85 86 4.882842 AGTGAAAATTGCCGGGTTAATT 57.117 36.364 2.18 0.83 0.00 1.40
86 87 4.565022 AGTGAAAATTGCCGGGTTAATTG 58.435 39.130 2.18 0.00 0.00 2.32
87 88 4.282195 AGTGAAAATTGCCGGGTTAATTGA 59.718 37.500 2.18 0.00 0.00 2.57
88 89 4.387559 GTGAAAATTGCCGGGTTAATTGAC 59.612 41.667 2.18 0.00 0.00 3.18
89 90 2.931512 AATTGCCGGGTTAATTGACG 57.068 45.000 2.18 0.00 0.00 4.35
94 95 6.168171 ATTGCCGGGTTAATTGACGGAAAG 62.168 45.833 2.18 0.00 46.26 2.62
95 96 2.537639 CGGGTTAATTGACGGAAAGC 57.462 50.000 0.00 0.00 0.00 3.51
96 97 1.131693 CGGGTTAATTGACGGAAAGCC 59.868 52.381 0.00 0.00 36.40 4.35
97 98 2.443416 GGGTTAATTGACGGAAAGCCT 58.557 47.619 0.00 0.00 36.72 4.58
98 99 2.163613 GGGTTAATTGACGGAAAGCCTG 59.836 50.000 0.00 0.00 36.72 4.85
99 100 3.078837 GGTTAATTGACGGAAAGCCTGA 58.921 45.455 0.00 0.00 0.00 3.86
100 101 3.119955 GGTTAATTGACGGAAAGCCTGAC 60.120 47.826 0.00 0.00 0.00 3.51
101 102 2.568623 AATTGACGGAAAGCCTGACT 57.431 45.000 0.00 0.00 0.00 3.41
102 103 3.695830 AATTGACGGAAAGCCTGACTA 57.304 42.857 0.00 0.00 0.00 2.59
103 104 3.695830 ATTGACGGAAAGCCTGACTAA 57.304 42.857 0.00 0.00 0.00 2.24
104 105 3.478857 TTGACGGAAAGCCTGACTAAA 57.521 42.857 0.00 0.00 0.00 1.85
105 106 3.478857 TGACGGAAAGCCTGACTAAAA 57.521 42.857 0.00 0.00 0.00 1.52
106 107 3.135994 TGACGGAAAGCCTGACTAAAAC 58.864 45.455 0.00 0.00 0.00 2.43
107 108 2.483106 GACGGAAAGCCTGACTAAAACC 59.517 50.000 0.00 0.00 0.00 3.27
108 109 1.463444 CGGAAAGCCTGACTAAAACCG 59.537 52.381 0.00 0.00 0.00 4.44
133 134 3.232213 ACACCTAGATTACAGCACACG 57.768 47.619 0.00 0.00 0.00 4.49
154 155 6.754675 ACACGGTAAAAGAAAAGGAAAACATG 59.245 34.615 0.00 0.00 0.00 3.21
155 156 5.751509 ACGGTAAAAGAAAAGGAAAACATGC 59.248 36.000 0.00 0.00 0.00 4.06
198 199 1.679139 CTTGTCAGTCAAGGTTGGCA 58.321 50.000 0.00 0.00 46.85 4.92
199 200 2.233271 CTTGTCAGTCAAGGTTGGCAT 58.767 47.619 0.00 0.00 46.85 4.40
200 201 1.608055 TGTCAGTCAAGGTTGGCATG 58.392 50.000 0.00 0.00 34.61 4.06
201 202 1.142667 TGTCAGTCAAGGTTGGCATGA 59.857 47.619 0.00 0.00 34.61 3.07
202 203 2.229792 GTCAGTCAAGGTTGGCATGAA 58.770 47.619 0.00 0.00 34.61 2.57
203 204 2.227388 GTCAGTCAAGGTTGGCATGAAG 59.773 50.000 0.00 0.00 34.61 3.02
204 205 1.068055 CAGTCAAGGTTGGCATGAAGC 60.068 52.381 0.00 0.00 44.65 3.86
221 222 3.547567 GCAATCAGCTCACCTCTGT 57.452 52.632 0.00 0.00 41.15 3.41
234 235 7.173218 CAGCTCACCTCTGTTATCAAAGTAAAA 59.827 37.037 0.00 0.00 0.00 1.52
235 236 7.389053 AGCTCACCTCTGTTATCAAAGTAAAAG 59.611 37.037 0.00 0.00 0.00 2.27
267 278 6.558771 TTTACTCCATGCATGCATATGTAC 57.441 37.500 31.73 0.00 36.65 2.90
283 294 3.004752 TGTACCTAACTACCTCGGACC 57.995 52.381 0.00 0.00 0.00 4.46
288 299 4.213513 ACCTAACTACCTCGGACCATAAG 58.786 47.826 0.00 0.00 0.00 1.73
295 306 2.017049 CCTCGGACCATAAGCAAAAGG 58.983 52.381 0.00 0.00 0.00 3.11
310 321 3.731216 GCAAAAGGACGAGCTTCTTTTTC 59.269 43.478 5.52 3.53 38.27 2.29
322 333 4.644685 AGCTTCTTTTTCACAGTAAAGGCA 59.355 37.500 0.00 0.00 33.29 4.75
333 344 2.415512 CAGTAAAGGCACGAGCTTAACC 59.584 50.000 4.48 0.00 41.70 2.85
359 370 0.606401 CAGTTTGGACCATCGGCTGT 60.606 55.000 0.00 0.00 0.00 4.40
368 379 1.372087 CCATCGGCTGTCAGCTTTCC 61.372 60.000 23.68 6.76 41.99 3.13
386 397 4.475135 GAAGGCCCAGGCTCGACC 62.475 72.222 8.89 0.00 37.50 4.79
414 425 2.097160 GCATGAACTGTGCGCTCG 59.903 61.111 9.73 4.32 32.29 5.03
427 438 1.358759 CGCTCGGCCAACAAGTTTT 59.641 52.632 2.24 0.00 0.00 2.43
429 440 1.002251 CGCTCGGCCAACAAGTTTTAA 60.002 47.619 2.24 0.00 0.00 1.52
433 444 2.099427 TCGGCCAACAAGTTTTAACCAC 59.901 45.455 2.24 0.00 0.00 4.16
435 446 3.676324 CGGCCAACAAGTTTTAACCACAA 60.676 43.478 2.24 0.00 0.00 3.33
436 447 4.254492 GGCCAACAAGTTTTAACCACAAA 58.746 39.130 0.00 0.00 0.00 2.83
438 449 4.093703 GCCAACAAGTTTTAACCACAAACC 59.906 41.667 0.00 0.00 35.10 3.27
440 451 4.112716 ACAAGTTTTAACCACAAACCCG 57.887 40.909 0.00 0.00 35.10 5.28
441 452 2.861335 CAAGTTTTAACCACAAACCCGC 59.139 45.455 0.00 0.00 35.10 6.13
442 453 1.409790 AGTTTTAACCACAAACCCGCC 59.590 47.619 0.00 0.00 35.10 6.13
443 454 0.751452 TTTTAACCACAAACCCGCCC 59.249 50.000 0.00 0.00 0.00 6.13
444 455 1.453762 TTTAACCACAAACCCGCCCG 61.454 55.000 0.00 0.00 0.00 6.13
445 456 3.846506 TAACCACAAACCCGCCCGG 62.847 63.158 0.00 0.00 37.81 5.73
536 563 2.125753 GCTCCTGCCACAGAGACG 60.126 66.667 0.00 0.00 32.44 4.18
537 564 2.575993 CTCCTGCCACAGAGACGG 59.424 66.667 0.00 0.00 32.44 4.79
538 565 1.979155 CTCCTGCCACAGAGACGGA 60.979 63.158 0.00 0.00 32.44 4.69
539 566 2.219325 CTCCTGCCACAGAGACGGAC 62.219 65.000 0.00 0.00 32.44 4.79
540 567 2.126307 CTGCCACAGAGACGGACG 60.126 66.667 0.00 0.00 32.44 4.79
541 568 2.596338 TGCCACAGAGACGGACGA 60.596 61.111 0.00 0.00 0.00 4.20
542 569 2.179517 GCCACAGAGACGGACGAG 59.820 66.667 0.00 0.00 0.00 4.18
543 570 2.878429 CCACAGAGACGGACGAGG 59.122 66.667 0.00 0.00 0.00 4.63
544 571 1.674651 CCACAGAGACGGACGAGGA 60.675 63.158 0.00 0.00 0.00 3.71
545 572 1.032657 CCACAGAGACGGACGAGGAT 61.033 60.000 0.00 0.00 0.00 3.24
546 573 0.378962 CACAGAGACGGACGAGGATC 59.621 60.000 0.00 0.00 0.00 3.36
547 574 0.748729 ACAGAGACGGACGAGGATCC 60.749 60.000 2.48 2.48 35.16 3.36
548 575 1.152922 AGAGACGGACGAGGATCCC 60.153 63.158 8.55 0.00 35.03 3.85
549 576 2.123812 AGACGGACGAGGATCCCC 60.124 66.667 8.55 0.79 35.03 4.81
551 578 2.442272 ACGGACGAGGATCCCCTG 60.442 66.667 8.55 0.45 44.53 4.45
552 579 3.917760 CGGACGAGGATCCCCTGC 61.918 72.222 8.55 0.00 44.53 4.85
553 580 3.551407 GGACGAGGATCCCCTGCC 61.551 72.222 8.55 1.52 44.53 4.85
554 581 3.917760 GACGAGGATCCCCTGCCG 61.918 72.222 8.55 7.30 44.53 5.69
555 582 4.779733 ACGAGGATCCCCTGCCGT 62.780 66.667 8.55 7.95 44.53 5.68
556 583 4.227134 CGAGGATCCCCTGCCGTG 62.227 72.222 8.55 0.00 44.53 4.94
557 584 4.554036 GAGGATCCCCTGCCGTGC 62.554 72.222 8.55 0.00 44.53 5.34
583 610 4.719369 GCCGTTCCGTCGCTGACT 62.719 66.667 7.03 0.00 0.00 3.41
584 611 2.504244 CCGTTCCGTCGCTGACTC 60.504 66.667 7.03 0.00 0.00 3.36
585 612 2.870161 CGTTCCGTCGCTGACTCG 60.870 66.667 7.03 3.85 0.00 4.18
586 613 2.254651 GTTCCGTCGCTGACTCGT 59.745 61.111 7.03 0.00 0.00 4.18
587 614 2.081212 GTTCCGTCGCTGACTCGTG 61.081 63.158 7.03 0.00 0.00 4.35
588 615 2.549198 TTCCGTCGCTGACTCGTGT 61.549 57.895 7.03 0.00 0.00 4.49
589 616 2.726850 TTCCGTCGCTGACTCGTGTG 62.727 60.000 0.00 0.00 0.00 3.82
590 617 3.461982 CGTCGCTGACTCGTGTGC 61.462 66.667 0.00 0.00 0.00 4.57
591 618 3.106407 GTCGCTGACTCGTGTGCC 61.106 66.667 0.00 0.00 0.00 5.01
592 619 4.357947 TCGCTGACTCGTGTGCCC 62.358 66.667 0.00 0.00 0.00 5.36
594 621 4.357947 GCTGACTCGTGTGCCCGA 62.358 66.667 0.00 0.00 35.22 5.14
595 622 2.430921 CTGACTCGTGTGCCCGAC 60.431 66.667 0.00 0.00 32.57 4.79
596 623 2.910479 TGACTCGTGTGCCCGACT 60.910 61.111 0.00 0.00 32.57 4.18
597 624 2.430921 GACTCGTGTGCCCGACTG 60.431 66.667 0.00 0.00 32.57 3.51
598 625 2.910479 ACTCGTGTGCCCGACTGA 60.910 61.111 0.00 0.00 32.57 3.41
599 626 2.338620 CTCGTGTGCCCGACTGAA 59.661 61.111 0.00 0.00 32.57 3.02
600 627 1.300620 CTCGTGTGCCCGACTGAAA 60.301 57.895 0.00 0.00 32.57 2.69
601 628 1.557443 CTCGTGTGCCCGACTGAAAC 61.557 60.000 0.00 0.00 32.57 2.78
602 629 1.594293 CGTGTGCCCGACTGAAACT 60.594 57.895 0.00 0.00 0.00 2.66
603 630 1.157870 CGTGTGCCCGACTGAAACTT 61.158 55.000 0.00 0.00 0.00 2.66
604 631 0.307760 GTGTGCCCGACTGAAACTTG 59.692 55.000 0.00 0.00 0.00 3.16
605 632 0.179234 TGTGCCCGACTGAAACTTGA 59.821 50.000 0.00 0.00 0.00 3.02
606 633 0.586802 GTGCCCGACTGAAACTTGAC 59.413 55.000 0.00 0.00 0.00 3.18
607 634 0.534203 TGCCCGACTGAAACTTGACC 60.534 55.000 0.00 0.00 0.00 4.02
608 635 1.235281 GCCCGACTGAAACTTGACCC 61.235 60.000 0.00 0.00 0.00 4.46
609 636 0.107831 CCCGACTGAAACTTGACCCA 59.892 55.000 0.00 0.00 0.00 4.51
610 637 1.226746 CCGACTGAAACTTGACCCAC 58.773 55.000 0.00 0.00 0.00 4.61
611 638 1.226746 CGACTGAAACTTGACCCACC 58.773 55.000 0.00 0.00 0.00 4.61
612 639 1.202651 CGACTGAAACTTGACCCACCT 60.203 52.381 0.00 0.00 0.00 4.00
613 640 2.222027 GACTGAAACTTGACCCACCTG 58.778 52.381 0.00 0.00 0.00 4.00
614 641 1.564348 ACTGAAACTTGACCCACCTGT 59.436 47.619 0.00 0.00 0.00 4.00
615 642 2.222027 CTGAAACTTGACCCACCTGTC 58.778 52.381 0.00 0.00 35.77 3.51
616 643 1.562008 TGAAACTTGACCCACCTGTCA 59.438 47.619 0.00 0.00 43.26 3.58
617 644 2.222027 GAAACTTGACCCACCTGTCAG 58.778 52.381 0.00 0.00 45.37 3.51
618 645 1.213296 AACTTGACCCACCTGTCAGT 58.787 50.000 0.00 0.00 45.37 3.41
619 646 0.469917 ACTTGACCCACCTGTCAGTG 59.530 55.000 0.00 0.00 45.37 3.66
626 653 3.233355 CACCTGTCAGTGGCCTAAC 57.767 57.895 3.32 0.00 33.95 2.34
627 654 0.670546 CACCTGTCAGTGGCCTAACG 60.671 60.000 3.32 0.00 33.95 3.18
628 655 1.079127 CCTGTCAGTGGCCTAACGG 60.079 63.158 3.32 1.71 0.00 4.44
649 676 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
650 677 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
651 678 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
652 679 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
653 680 1.935327 GCCGTACGTCAGAGGAGCTT 61.935 60.000 15.21 0.00 0.00 3.74
654 681 0.099082 CCGTACGTCAGAGGAGCTTC 59.901 60.000 15.21 0.00 0.00 3.86
655 682 0.099082 CGTACGTCAGAGGAGCTTCC 59.901 60.000 7.22 0.00 36.58 3.46
676 703 3.090210 TCCCACGGAGACATACTACAA 57.910 47.619 0.00 0.00 0.00 2.41
678 705 2.758979 CCCACGGAGACATACTACAACT 59.241 50.000 0.00 0.00 0.00 3.16
738 765 0.463116 CCCGATTAACCCACTTCCCG 60.463 60.000 0.00 0.00 0.00 5.14
817 849 7.979537 CCAAGTAAAGTAAAGAATTATTGCCCC 59.020 37.037 0.00 0.00 0.00 5.80
818 850 7.329588 AGTAAAGTAAAGAATTATTGCCCCG 57.670 36.000 0.00 0.00 0.00 5.73
819 851 5.592104 AAAGTAAAGAATTATTGCCCCGG 57.408 39.130 0.00 0.00 0.00 5.73
910 947 1.726791 CGCCTGCCTATAAATACGCAG 59.273 52.381 11.69 11.69 46.58 5.18
911 948 1.464997 GCCTGCCTATAAATACGCAGC 59.535 52.381 12.69 7.21 45.85 5.25
912 949 2.872038 GCCTGCCTATAAATACGCAGCT 60.872 50.000 12.69 0.00 45.85 4.24
986 1024 1.574925 CCATCGGATCGATCGTCGT 59.425 57.895 18.81 2.42 45.19 4.34
987 1025 0.794473 CCATCGGATCGATCGTCGTA 59.206 55.000 18.81 8.49 45.19 3.43
988 1026 1.201932 CCATCGGATCGATCGTCGTAG 60.202 57.143 18.81 13.13 45.19 3.51
1022 1060 2.095843 GCCATTTGCGACGTCGAC 59.904 61.111 39.74 28.96 43.02 4.20
1060 1098 2.757508 TCTCTGCCCTCCTCTGCG 60.758 66.667 0.00 0.00 0.00 5.18
1070 1108 0.682855 CTCCTCTGCGTCCTCCTCTT 60.683 60.000 0.00 0.00 0.00 2.85
1088 1126 4.202440 CCTCTTCTCAGGTAATGCATGGAT 60.202 45.833 0.00 0.00 0.00 3.41
1103 1141 2.584970 GATGAATGCCCGTCGCGA 60.585 61.111 3.71 3.71 42.08 5.87
1104 1142 2.871427 GATGAATGCCCGTCGCGAC 61.871 63.158 28.96 28.96 42.08 5.19
1111 1149 3.214123 CCCGTCGCGACCCTGATA 61.214 66.667 31.84 0.00 0.00 2.15
1112 1150 2.331805 CCGTCGCGACCCTGATAG 59.668 66.667 31.84 16.42 0.00 2.08
1113 1151 2.184830 CCGTCGCGACCCTGATAGA 61.185 63.158 31.84 0.00 0.00 1.98
1114 1152 1.516365 CCGTCGCGACCCTGATAGAT 61.516 60.000 31.84 0.00 0.00 1.98
1115 1153 1.154197 CGTCGCGACCCTGATAGATA 58.846 55.000 31.84 0.00 0.00 1.98
1116 1154 1.136029 CGTCGCGACCCTGATAGATAC 60.136 57.143 31.84 4.63 0.00 2.24
1117 1155 1.199558 GTCGCGACCCTGATAGATACC 59.800 57.143 28.61 0.00 0.00 2.73
1145 1183 4.535425 GTCGGAGTGTGACTGACG 57.465 61.111 0.00 0.00 34.66 4.35
1179 1222 4.908687 TGCGTGCGTGCAGAGGTT 62.909 61.111 0.00 0.00 40.62 3.50
1195 1238 1.069427 GTTTGGGTGCTGCAATGCA 59.931 52.632 7.99 7.99 41.05 3.96
1308 1351 2.505498 GGTGCGCATCTACGACGTG 61.505 63.158 15.91 0.72 34.06 4.49
1504 1547 2.012948 GTGTTCACCGACGACGACC 61.013 63.158 9.28 0.00 42.66 4.79
1774 1817 1.353022 ACCCCGCAAAGTAATTCCTCA 59.647 47.619 0.00 0.00 0.00 3.86
1775 1818 2.224917 ACCCCGCAAAGTAATTCCTCAA 60.225 45.455 0.00 0.00 0.00 3.02
1777 1820 3.066760 CCCCGCAAAGTAATTCCTCAATC 59.933 47.826 0.00 0.00 0.00 2.67
1778 1821 3.066760 CCCGCAAAGTAATTCCTCAATCC 59.933 47.826 0.00 0.00 0.00 3.01
1779 1822 3.694072 CCGCAAAGTAATTCCTCAATCCA 59.306 43.478 0.00 0.00 0.00 3.41
1784 1827 7.415095 CGCAAAGTAATTCCTCAATCCAACATA 60.415 37.037 0.00 0.00 0.00 2.29
1793 1836 8.565896 TTCCTCAATCCAACATATATACATGC 57.434 34.615 0.00 0.00 0.00 4.06
1794 1837 7.112122 TCCTCAATCCAACATATATACATGCC 58.888 38.462 0.00 0.00 0.00 4.40
1795 1838 7.037370 TCCTCAATCCAACATATATACATGCCT 60.037 37.037 0.00 0.00 0.00 4.75
1796 1839 7.281774 CCTCAATCCAACATATATACATGCCTC 59.718 40.741 0.00 0.00 0.00 4.70
1797 1840 7.921304 TCAATCCAACATATATACATGCCTCT 58.079 34.615 0.00 0.00 0.00 3.69
1798 1841 8.385491 TCAATCCAACATATATACATGCCTCTT 58.615 33.333 0.00 0.00 0.00 2.85
1799 1842 9.017509 CAATCCAACATATATACATGCCTCTTT 57.982 33.333 0.00 0.00 0.00 2.52
1801 1844 9.672673 ATCCAACATATATACATGCCTCTTTAC 57.327 33.333 0.00 0.00 0.00 2.01
1802 1845 8.880244 TCCAACATATATACATGCCTCTTTACT 58.120 33.333 0.00 0.00 0.00 2.24
1843 1889 1.126079 GTAGTCACACGTGTCGTTGG 58.874 55.000 20.49 7.49 38.32 3.77
1845 1891 1.881252 GTCACACGTGTCGTTGGCT 60.881 57.895 20.49 0.00 38.32 4.75
1859 1905 1.673920 GTTGGCTTTTCTGACGTGGAA 59.326 47.619 0.00 0.00 0.00 3.53
1887 1933 4.662961 TGCAGCGTGTCCCTGTCG 62.663 66.667 0.00 0.00 32.93 4.35
1935 1981 4.446413 GCGGTGGACCCCTACACG 62.446 72.222 0.00 0.00 38.46 4.49
2400 2446 7.000472 TGCAAATTAATTTTCCATGGAACCAA 59.000 30.769 27.04 19.26 33.41 3.67
2404 2450 4.622260 AATTTTCCATGGAACCAACTGG 57.378 40.909 27.04 7.05 42.17 4.00
2405 2451 3.320610 TTTTCCATGGAACCAACTGGA 57.679 42.857 27.04 6.92 38.94 3.86
2406 2452 2.584835 TTCCATGGAACCAACTGGAG 57.415 50.000 23.63 0.00 36.72 3.86
2407 2453 1.444933 TCCATGGAACCAACTGGAGT 58.555 50.000 13.46 0.00 38.94 3.85
2409 2455 2.304761 TCCATGGAACCAACTGGAGTAC 59.695 50.000 13.46 0.00 38.94 2.73
2411 2457 3.308402 CCATGGAACCAACTGGAGTACAT 60.308 47.826 5.56 0.00 38.94 2.29
2412 2458 4.080582 CCATGGAACCAACTGGAGTACATA 60.081 45.833 5.56 0.00 38.94 2.29
2413 2459 4.819105 TGGAACCAACTGGAGTACATAG 57.181 45.455 1.86 0.00 38.94 2.23
2414 2460 4.164981 TGGAACCAACTGGAGTACATAGT 58.835 43.478 1.86 0.00 38.94 2.12
2415 2461 5.335261 TGGAACCAACTGGAGTACATAGTA 58.665 41.667 1.86 0.00 38.94 1.82
2416 2462 5.186409 TGGAACCAACTGGAGTACATAGTAC 59.814 44.000 1.86 0.00 38.94 2.73
2442 2498 4.022603 AGCATATCTATCAGGATCACGCT 58.977 43.478 0.00 0.00 0.00 5.07
2470 2526 7.383572 CCTTTTTCGGTCAGTCAGAGATATATG 59.616 40.741 0.00 0.00 0.00 1.78
2555 2614 3.415457 TGCACATGTGGATCACTGTTA 57.585 42.857 26.55 0.00 35.11 2.41
2597 2659 5.403246 CAGACTCGTACTATGCAAAAGTCT 58.597 41.667 8.24 7.50 41.87 3.24
2598 2660 5.513495 CAGACTCGTACTATGCAAAAGTCTC 59.487 44.000 8.24 3.80 39.83 3.36
2599 2661 5.416326 AGACTCGTACTATGCAAAAGTCTCT 59.584 40.000 8.24 1.37 37.97 3.10
2600 2662 6.026947 ACTCGTACTATGCAAAAGTCTCTT 57.973 37.500 8.24 0.00 0.00 2.85
2601 2663 6.094061 ACTCGTACTATGCAAAAGTCTCTTC 58.906 40.000 8.24 0.00 0.00 2.87
2602 2664 6.071840 ACTCGTACTATGCAAAAGTCTCTTCT 60.072 38.462 8.24 0.00 0.00 2.85
2603 2665 6.688578 TCGTACTATGCAAAAGTCTCTTCTT 58.311 36.000 8.24 0.00 0.00 2.52
2613 2677 9.778741 TGCAAAAGTCTCTTCTTCTTATCTAAA 57.221 29.630 0.00 0.00 0.00 1.85
2633 2697 0.736325 CGAAAGTGGCTAGTGGTCCG 60.736 60.000 0.00 0.00 0.00 4.79
2674 2741 9.654663 GTAGTACCAAACTATTCACTTTCATCT 57.345 33.333 0.00 0.00 42.63 2.90
2675 2742 8.553459 AGTACCAAACTATTCACTTTCATCTG 57.447 34.615 0.00 0.00 36.36 2.90
2676 2743 6.259550 ACCAAACTATTCACTTTCATCTGC 57.740 37.500 0.00 0.00 0.00 4.26
2677 2744 5.769662 ACCAAACTATTCACTTTCATCTGCA 59.230 36.000 0.00 0.00 0.00 4.41
2678 2745 6.435277 ACCAAACTATTCACTTTCATCTGCAT 59.565 34.615 0.00 0.00 0.00 3.96
2698 2765 3.831883 ATGCATGCATGGACGGAC 58.168 55.556 31.74 10.52 35.03 4.79
2711 2778 1.201647 GGACGGACGAGAGATCAACAA 59.798 52.381 0.00 0.00 0.00 2.83
2742 2809 7.623268 CTTGTGTGCCAAGTAAAGAAATTAC 57.377 36.000 0.00 0.00 44.64 1.89
2796 2863 0.744771 CCTAGGCGGCAGTTTTCCTC 60.745 60.000 13.08 0.00 0.00 3.71
2797 2864 0.744771 CTAGGCGGCAGTTTTCCTCC 60.745 60.000 13.08 0.00 0.00 4.30
2896 2963 6.918067 TCAGATCACTCCACTTAGAAAGAA 57.082 37.500 0.00 0.00 0.00 2.52
2897 2964 7.303182 TCAGATCACTCCACTTAGAAAGAAA 57.697 36.000 0.00 0.00 0.00 2.52
2898 2965 7.382110 TCAGATCACTCCACTTAGAAAGAAAG 58.618 38.462 0.00 0.00 0.00 2.62
2899 2966 6.593382 CAGATCACTCCACTTAGAAAGAAAGG 59.407 42.308 0.00 0.00 0.00 3.11
2900 2967 4.642429 TCACTCCACTTAGAAAGAAAGGC 58.358 43.478 0.00 0.00 0.00 4.35
2901 2968 4.102524 TCACTCCACTTAGAAAGAAAGGCA 59.897 41.667 0.00 0.00 0.00 4.75
2902 2969 4.453819 CACTCCACTTAGAAAGAAAGGCAG 59.546 45.833 0.00 0.00 0.00 4.85
2923 2990 4.630940 CAGAAAAAGCACCAAGAAAGCAAA 59.369 37.500 0.00 0.00 0.00 3.68
2924 2991 4.872124 AGAAAAAGCACCAAGAAAGCAAAG 59.128 37.500 0.00 0.00 0.00 2.77
2925 2992 4.470334 AAAAGCACCAAGAAAGCAAAGA 57.530 36.364 0.00 0.00 0.00 2.52
2927 2994 1.683385 AGCACCAAGAAAGCAAAGACC 59.317 47.619 0.00 0.00 0.00 3.85
2928 2995 1.683385 GCACCAAGAAAGCAAAGACCT 59.317 47.619 0.00 0.00 0.00 3.85
2929 2996 2.884639 GCACCAAGAAAGCAAAGACCTA 59.115 45.455 0.00 0.00 0.00 3.08
2930 2997 3.304726 GCACCAAGAAAGCAAAGACCTAC 60.305 47.826 0.00 0.00 0.00 3.18
2931 2998 3.058914 CACCAAGAAAGCAAAGACCTACG 60.059 47.826 0.00 0.00 0.00 3.51
2958 3025 7.179338 AGGGGTCATATCTAGTAATACTTGCAG 59.821 40.741 0.00 0.00 0.00 4.41
2962 3029 7.543868 GTCATATCTAGTAATACTTGCAGCCAG 59.456 40.741 0.00 0.00 0.00 4.85
2981 3048 4.382362 GCCAGCAAAAAGGAATAATCAGCT 60.382 41.667 0.00 0.00 0.00 4.24
2982 3049 5.107133 CCAGCAAAAAGGAATAATCAGCTG 58.893 41.667 7.63 7.63 44.65 4.24
3000 3067 2.047939 GCCTTTGCATGCACCACC 60.048 61.111 22.58 5.84 37.47 4.61
3027 3095 0.985549 GAGTTCACACTCGATCGTGC 59.014 55.000 15.94 0.00 40.30 5.34
3087 3161 6.343703 AGGCCGTTCGTTCTTTTTAGTATAT 58.656 36.000 0.00 0.00 0.00 0.86
3088 3162 7.491682 AGGCCGTTCGTTCTTTTTAGTATATA 58.508 34.615 0.00 0.00 0.00 0.86
3089 3163 7.650903 AGGCCGTTCGTTCTTTTTAGTATATAG 59.349 37.037 0.00 0.00 0.00 1.31
3090 3164 7.436376 GGCCGTTCGTTCTTTTTAGTATATAGT 59.564 37.037 0.00 0.00 0.00 2.12
3091 3165 8.475359 GCCGTTCGTTCTTTTTAGTATATAGTC 58.525 37.037 0.00 0.00 0.00 2.59
3092 3166 9.507280 CCGTTCGTTCTTTTTAGTATATAGTCA 57.493 33.333 0.00 0.00 0.00 3.41
3109 3183 3.378512 AGTCATATCACAGCCAAGGAGA 58.621 45.455 0.00 0.00 0.00 3.71
3120 3223 4.042684 ACAGCCAAGGAGAAGAGATTTCTT 59.957 41.667 0.00 0.00 46.22 2.52
3140 3243 5.280945 TCTTAATATTCCTTGCGCATTTGC 58.719 37.500 12.75 0.00 37.78 3.68
3152 3255 0.780002 GCATTTGCGCACACAAAGAG 59.220 50.000 11.12 0.00 42.45 2.85
3161 3264 3.857052 CGCACACAAAGAGTAGGGAATA 58.143 45.455 0.00 0.00 0.00 1.75
3195 3300 2.674357 TCCTTTTTGGTACGCTTATCGC 59.326 45.455 0.00 0.00 38.29 4.58
3214 3319 1.203065 CGCGGTTTAGTATTCCCGAC 58.797 55.000 0.00 0.00 43.01 4.79
3220 3325 1.737355 TTAGTATTCCCGACGGGCCG 61.737 60.000 28.89 27.06 43.94 6.13
3235 3340 2.091541 GGGCCGAACTTTCATGATTGA 58.908 47.619 0.00 0.00 0.00 2.57
3285 3391 4.021102 TCTTCTTCTCCACCCAAATGTC 57.979 45.455 0.00 0.00 0.00 3.06
3320 3428 5.389859 TGTTAGTGGAGCAAAAATGATGG 57.610 39.130 0.00 0.00 0.00 3.51
3334 3442 8.430063 GCAAAAATGATGGCTGATAATTAATCG 58.570 33.333 0.00 0.00 37.42 3.34
3336 3444 6.822667 AATGATGGCTGATAATTAATCGCA 57.177 33.333 0.00 0.00 37.42 5.10
3341 3449 6.968131 TGGCTGATAATTAATCGCATAGAC 57.032 37.500 0.00 0.00 37.42 2.59
3352 3460 0.739462 CGCATAGACCACCGAAAGCA 60.739 55.000 0.00 0.00 0.00 3.91
3354 3462 1.676014 GCATAGACCACCGAAAGCAGT 60.676 52.381 0.00 0.00 0.00 4.40
3358 3466 1.899814 AGACCACCGAAAGCAGTGATA 59.100 47.619 0.00 0.00 36.01 2.15
3359 3467 2.301870 AGACCACCGAAAGCAGTGATAA 59.698 45.455 0.00 0.00 36.01 1.75
3428 3536 7.771183 TCAATTTTGAGAAGTGCAGTTTACTT 58.229 30.769 8.48 0.00 35.26 2.24
3438 3546 8.989980 AGAAGTGCAGTTTACTTAAAGATGTAC 58.010 33.333 8.48 6.85 38.42 2.90
3521 3629 1.552792 TGTGATACGCAGGATGTTGGA 59.447 47.619 0.00 0.00 39.31 3.53
3533 3641 2.484264 GGATGTTGGAAAGGACTTGACG 59.516 50.000 0.00 0.00 0.00 4.35
3543 3651 2.029844 GACTTGACGAGCCTGTGCC 61.030 63.158 0.00 0.00 38.69 5.01
3546 3654 2.440385 CTTGACGAGCCTGTGCCTCA 62.440 60.000 0.00 0.00 38.69 3.86
3613 3721 2.656947 TAGCAAAAGCACCCAAGAGT 57.343 45.000 0.00 0.00 0.00 3.24
3627 3735 0.394216 AAGAGTGCGGCCATATGCAA 60.394 50.000 2.24 0.00 43.75 4.08
3708 3816 2.824936 TGGTGCACCATTTGAAGGTATG 59.175 45.455 34.74 0.00 42.01 2.39
3709 3817 2.417243 GGTGCACCATTTGAAGGTATGC 60.417 50.000 31.23 0.00 37.23 3.14
3721 3829 4.586235 GTATGCGCCATGGCCCCT 62.586 66.667 30.79 17.43 37.98 4.79
3764 3872 4.214971 CAGATGACACAACCTCCTTTTCTG 59.785 45.833 0.00 0.00 0.00 3.02
3765 3873 2.297701 TGACACAACCTCCTTTTCTGC 58.702 47.619 0.00 0.00 0.00 4.26
3791 3899 4.974645 TGTGGTAGCCCTTTATATCCAG 57.025 45.455 0.00 0.00 0.00 3.86
3859 3967 1.959710 TGGGCTACCACCACATAAGA 58.040 50.000 0.00 0.00 43.37 2.10
3860 3968 2.270858 TGGGCTACCACCACATAAGAA 58.729 47.619 0.00 0.00 43.37 2.52
3861 3969 2.645297 TGGGCTACCACCACATAAGAAA 59.355 45.455 0.00 0.00 43.37 2.52
3862 3970 3.268334 TGGGCTACCACCACATAAGAAAT 59.732 43.478 0.00 0.00 43.37 2.17
3863 3971 3.883489 GGGCTACCACCACATAAGAAATC 59.117 47.826 0.00 0.00 36.50 2.17
3864 3972 4.523083 GGCTACCACCACATAAGAAATCA 58.477 43.478 0.00 0.00 0.00 2.57
3865 3973 4.947388 GGCTACCACCACATAAGAAATCAA 59.053 41.667 0.00 0.00 0.00 2.57
3866 3974 5.594317 GGCTACCACCACATAAGAAATCAAT 59.406 40.000 0.00 0.00 0.00 2.57
3867 3975 6.770785 GGCTACCACCACATAAGAAATCAATA 59.229 38.462 0.00 0.00 0.00 1.90
3868 3976 7.448469 GGCTACCACCACATAAGAAATCAATAT 59.552 37.037 0.00 0.00 0.00 1.28
3869 3977 8.292448 GCTACCACCACATAAGAAATCAATATG 58.708 37.037 5.29 5.29 34.08 1.78
3870 3978 9.342308 CTACCACCACATAAGAAATCAATATGT 57.658 33.333 6.23 6.23 40.04 2.29
3923 4034 9.181805 GATACTACATGACACACATACATACAC 57.818 37.037 0.00 0.00 37.46 2.90
3990 4101 2.069430 CAAGGGGCTCCTCCTCCTC 61.069 68.421 5.00 0.00 44.07 3.71
3991 4102 3.339951 AAGGGGCTCCTCCTCCTCC 62.340 68.421 5.00 0.00 44.07 4.30
4006 4117 1.188863 CCTCCTTTTCCATTGCAGGG 58.811 55.000 0.18 0.18 0.00 4.45
4023 4134 1.078656 AGGGGGCAAAAGGAAAGCATA 59.921 47.619 0.00 0.00 0.00 3.14
4025 4136 2.158914 GGGGGCAAAAGGAAAGCATATG 60.159 50.000 0.00 0.00 0.00 1.78
4026 4137 2.554142 GGGCAAAAGGAAAGCATATGC 58.446 47.619 20.36 20.36 42.49 3.14
4050 4161 3.057946 GTGTAGGCCAGAGAAAAAGCTTG 60.058 47.826 5.01 0.00 0.00 4.01
4054 4165 3.073062 AGGCCAGAGAAAAAGCTTGTCTA 59.927 43.478 5.01 0.00 0.00 2.59
4085 4196 2.823587 GGCACTACCTCCCTCTACC 58.176 63.158 0.00 0.00 34.51 3.18
4086 4197 0.759812 GGCACTACCTCCCTCTACCC 60.760 65.000 0.00 0.00 34.51 3.69
4087 4198 0.262285 GCACTACCTCCCTCTACCCT 59.738 60.000 0.00 0.00 0.00 4.34
4088 4199 1.754910 GCACTACCTCCCTCTACCCTC 60.755 61.905 0.00 0.00 0.00 4.30
4090 4201 1.138568 CTACCTCCCTCTACCCTCGA 58.861 60.000 0.00 0.00 0.00 4.04
4091 4202 1.072648 CTACCTCCCTCTACCCTCGAG 59.927 61.905 5.13 5.13 0.00 4.04
4092 4203 1.151908 CCTCCCTCTACCCTCGAGG 59.848 68.421 25.36 25.36 46.11 4.63
4142 4253 0.928229 GCGTGTAAATACTGCGAGGG 59.072 55.000 10.55 0.00 0.00 4.30
4148 4259 1.751437 AAATACTGCGAGGGAAAGGC 58.249 50.000 0.00 0.00 0.00 4.35
4149 4260 0.462047 AATACTGCGAGGGAAAGGCG 60.462 55.000 0.00 0.00 0.00 5.52
4150 4261 1.614241 ATACTGCGAGGGAAAGGCGT 61.614 55.000 0.00 0.00 0.00 5.68
4161 4272 0.317519 GAAAGGCGTCCGTTTTGTGG 60.318 55.000 0.00 0.00 0.00 4.17
4182 4293 3.576356 GCGCACACATGGGATCCG 61.576 66.667 0.00 1.80 41.24 4.18
4190 4301 1.130054 ACATGGGATCCGGGGAGATG 61.130 60.000 5.45 0.59 0.00 2.90
4213 4324 2.111384 CGGGGAAGATGGAGAGAAAGA 58.889 52.381 0.00 0.00 0.00 2.52
4214 4325 2.501723 CGGGGAAGATGGAGAGAAAGAA 59.498 50.000 0.00 0.00 0.00 2.52
4215 4326 3.055094 CGGGGAAGATGGAGAGAAAGAAA 60.055 47.826 0.00 0.00 0.00 2.52
4216 4327 4.522114 GGGGAAGATGGAGAGAAAGAAAG 58.478 47.826 0.00 0.00 0.00 2.62
4226 4337 0.250770 AGAAAGAAAGGGTGGCCGAC 60.251 55.000 0.00 0.00 0.00 4.79
4379 4505 5.810587 CGTTTATTTGTTCTAGCTAGGCTCA 59.189 40.000 20.58 13.60 40.44 4.26
4381 4507 3.895232 TTTGTTCTAGCTAGGCTCAGG 57.105 47.619 20.58 0.00 40.44 3.86
4382 4508 2.534042 TGTTCTAGCTAGGCTCAGGT 57.466 50.000 20.58 0.00 40.44 4.00
4386 4512 1.288037 TCTAGCTAGGCTCAGGTTCCA 59.712 52.381 20.58 0.00 40.44 3.53
4389 4515 0.543749 GCTAGGCTCAGGTTCCATGT 59.456 55.000 0.00 0.00 0.00 3.21
4395 4521 0.325933 CTCAGGTTCCATGTGGCTGA 59.674 55.000 7.37 7.37 33.07 4.26
4414 4540 4.556592 TGATGATGATCAGTTGGTGTGA 57.443 40.909 0.09 0.00 33.40 3.58
4419 4545 0.678048 GATCAGTTGGTGTGAGGGGC 60.678 60.000 0.00 0.00 0.00 5.80
4440 4566 3.199677 CCTGGGCGTCGATGTAAATAAA 58.800 45.455 6.48 0.00 0.00 1.40
4443 4569 4.443621 TGGGCGTCGATGTAAATAAATGA 58.556 39.130 6.48 0.00 0.00 2.57
4449 4575 8.469125 GGCGTCGATGTAAATAAATGAAAAATC 58.531 33.333 6.48 0.00 0.00 2.17
4474 4600 9.508642 TCTATCAGAGTATGTTATGATTCTCGT 57.491 33.333 0.00 0.00 34.38 4.18
4482 4608 5.142635 TGTTATGATTCTCGTTGCGATTG 57.857 39.130 0.00 0.00 34.61 2.67
4484 4610 5.121611 TGTTATGATTCTCGTTGCGATTGTT 59.878 36.000 0.00 0.00 34.61 2.83
4485 4611 3.454042 TGATTCTCGTTGCGATTGTTG 57.546 42.857 0.00 0.00 34.61 3.33
4495 4622 4.317069 CGTTGCGATTGTTGTTTCTTTTCC 60.317 41.667 0.00 0.00 0.00 3.13
4500 4627 5.290885 GCGATTGTTGTTTCTTTTCCTGTTT 59.709 36.000 0.00 0.00 0.00 2.83
4510 4637 3.759618 TCTTTTCCTGTTTTGTTCACGGT 59.240 39.130 0.00 0.00 0.00 4.83
4514 4641 0.248866 CTGTTTTGTTCACGGTGGCC 60.249 55.000 8.50 0.00 0.00 5.36
4515 4642 1.066752 GTTTTGTTCACGGTGGCCC 59.933 57.895 8.50 0.00 0.00 5.80
4527 4654 1.209127 GTGGCCCGTGTTTCGATTG 59.791 57.895 0.00 0.00 42.86 2.67
4533 4660 1.665679 CCCGTGTTTCGATTGAGATGG 59.334 52.381 0.00 0.00 42.86 3.51
4536 4663 2.159430 CGTGTTTCGATTGAGATGGCAA 59.841 45.455 0.00 0.00 42.86 4.52
4539 4666 3.758023 TGTTTCGATTGAGATGGCAATGT 59.242 39.130 0.00 0.00 38.53 2.71
4555 4682 4.778534 CAATGTCCTTGCTGTTCTTGAT 57.221 40.909 0.00 0.00 0.00 2.57
4558 4685 2.880268 TGTCCTTGCTGTTCTTGATGTG 59.120 45.455 0.00 0.00 0.00 3.21
4559 4686 3.141398 GTCCTTGCTGTTCTTGATGTGA 58.859 45.455 0.00 0.00 0.00 3.58
4563 4690 4.741676 CCTTGCTGTTCTTGATGTGAAAAC 59.258 41.667 0.00 0.00 0.00 2.43
4571 4698 5.811399 TCTTGATGTGAAAACGAAACTGT 57.189 34.783 0.00 0.00 0.00 3.55
4572 4699 5.568482 TCTTGATGTGAAAACGAAACTGTG 58.432 37.500 0.00 0.00 0.00 3.66
4574 4701 2.553079 TGTGAAAACGAAACTGTGCC 57.447 45.000 0.00 0.00 0.00 5.01
4592 4719 2.673523 CCACAGAGGAAGGGGCTG 59.326 66.667 0.00 0.00 41.22 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.045223 GTCTGTTGCCTTCTTTCAAAATAAAAT 57.955 29.630 0.00 0.00 0.00 1.82
13 14 8.257306 AGTCTGTTGCCTTCTTTCAAAATAAAA 58.743 29.630 0.00 0.00 0.00 1.52
14 15 7.781056 AGTCTGTTGCCTTCTTTCAAAATAAA 58.219 30.769 0.00 0.00 0.00 1.40
15 16 7.346751 AGTCTGTTGCCTTCTTTCAAAATAA 57.653 32.000 0.00 0.00 0.00 1.40
16 17 6.959639 AGTCTGTTGCCTTCTTTCAAAATA 57.040 33.333 0.00 0.00 0.00 1.40
17 18 5.859205 AGTCTGTTGCCTTCTTTCAAAAT 57.141 34.783 0.00 0.00 0.00 1.82
18 19 5.410067 CAAGTCTGTTGCCTTCTTTCAAAA 58.590 37.500 0.00 0.00 0.00 2.44
19 20 4.677779 GCAAGTCTGTTGCCTTCTTTCAAA 60.678 41.667 0.00 0.00 39.38 2.69
20 21 3.181487 GCAAGTCTGTTGCCTTCTTTCAA 60.181 43.478 0.00 0.00 39.38 2.69
21 22 2.358898 GCAAGTCTGTTGCCTTCTTTCA 59.641 45.455 0.00 0.00 39.38 2.69
22 23 2.620585 AGCAAGTCTGTTGCCTTCTTTC 59.379 45.455 6.12 0.00 45.98 2.62
23 24 2.360165 CAGCAAGTCTGTTGCCTTCTTT 59.640 45.455 6.12 0.00 45.98 2.52
24 25 1.952296 CAGCAAGTCTGTTGCCTTCTT 59.048 47.619 6.12 0.00 45.98 2.52
25 26 1.602311 CAGCAAGTCTGTTGCCTTCT 58.398 50.000 6.12 0.00 45.98 2.85
35 36 8.169977 TCTTAATCAATGAAAACAGCAAGTCT 57.830 30.769 0.00 0.00 0.00 3.24
36 37 8.801715 TTCTTAATCAATGAAAACAGCAAGTC 57.198 30.769 0.00 0.00 0.00 3.01
37 38 8.632679 TCTTCTTAATCAATGAAAACAGCAAGT 58.367 29.630 0.00 0.00 0.00 3.16
38 39 9.467258 TTCTTCTTAATCAATGAAAACAGCAAG 57.533 29.630 0.00 0.00 0.00 4.01
39 40 9.467258 CTTCTTCTTAATCAATGAAAACAGCAA 57.533 29.630 0.00 0.00 0.00 3.91
40 41 8.632679 ACTTCTTCTTAATCAATGAAAACAGCA 58.367 29.630 0.00 0.00 0.00 4.41
41 42 8.909671 CACTTCTTCTTAATCAATGAAAACAGC 58.090 33.333 0.00 0.00 0.00 4.40
50 51 9.428097 GGCAATTTTCACTTCTTCTTAATCAAT 57.572 29.630 0.00 0.00 0.00 2.57
51 52 7.594758 CGGCAATTTTCACTTCTTCTTAATCAA 59.405 33.333 0.00 0.00 0.00 2.57
52 53 7.083858 CGGCAATTTTCACTTCTTCTTAATCA 58.916 34.615 0.00 0.00 0.00 2.57
53 54 6.528072 CCGGCAATTTTCACTTCTTCTTAATC 59.472 38.462 0.00 0.00 0.00 1.75
54 55 6.389906 CCGGCAATTTTCACTTCTTCTTAAT 58.610 36.000 0.00 0.00 0.00 1.40
55 56 5.278758 CCCGGCAATTTTCACTTCTTCTTAA 60.279 40.000 0.00 0.00 0.00 1.85
56 57 4.217550 CCCGGCAATTTTCACTTCTTCTTA 59.782 41.667 0.00 0.00 0.00 2.10
57 58 3.005791 CCCGGCAATTTTCACTTCTTCTT 59.994 43.478 0.00 0.00 0.00 2.52
58 59 2.558359 CCCGGCAATTTTCACTTCTTCT 59.442 45.455 0.00 0.00 0.00 2.85
59 60 2.296190 ACCCGGCAATTTTCACTTCTTC 59.704 45.455 0.00 0.00 0.00 2.87
60 61 2.316108 ACCCGGCAATTTTCACTTCTT 58.684 42.857 0.00 0.00 0.00 2.52
61 62 1.995376 ACCCGGCAATTTTCACTTCT 58.005 45.000 0.00 0.00 0.00 2.85
62 63 2.812358 AACCCGGCAATTTTCACTTC 57.188 45.000 0.00 0.00 0.00 3.01
63 64 4.882842 ATTAACCCGGCAATTTTCACTT 57.117 36.364 0.00 0.00 0.00 3.16
64 65 4.282195 TCAATTAACCCGGCAATTTTCACT 59.718 37.500 0.00 0.00 0.00 3.41
65 66 4.387559 GTCAATTAACCCGGCAATTTTCAC 59.612 41.667 0.00 0.00 0.00 3.18
66 67 4.561105 GTCAATTAACCCGGCAATTTTCA 58.439 39.130 0.00 0.00 0.00 2.69
67 68 3.610677 CGTCAATTAACCCGGCAATTTTC 59.389 43.478 0.00 0.00 0.00 2.29
68 69 3.580731 CGTCAATTAACCCGGCAATTTT 58.419 40.909 0.00 0.00 0.00 1.82
69 70 2.094442 CCGTCAATTAACCCGGCAATTT 60.094 45.455 0.00 0.00 33.20 1.82
70 71 1.474879 CCGTCAATTAACCCGGCAATT 59.525 47.619 0.00 0.00 33.20 2.32
71 72 1.099689 CCGTCAATTAACCCGGCAAT 58.900 50.000 0.00 0.00 33.20 3.56
72 73 0.036448 TCCGTCAATTAACCCGGCAA 59.964 50.000 0.00 0.00 40.23 4.52
73 74 0.036448 TTCCGTCAATTAACCCGGCA 59.964 50.000 0.00 0.00 40.23 5.69
74 75 1.131693 CTTTCCGTCAATTAACCCGGC 59.868 52.381 0.00 0.00 40.23 6.13
75 76 1.131693 GCTTTCCGTCAATTAACCCGG 59.868 52.381 0.00 0.00 41.75 5.73
76 77 1.131693 GGCTTTCCGTCAATTAACCCG 59.868 52.381 0.00 0.00 0.00 5.28
77 78 2.163613 CAGGCTTTCCGTCAATTAACCC 59.836 50.000 0.00 0.00 37.47 4.11
78 79 3.078837 TCAGGCTTTCCGTCAATTAACC 58.921 45.455 0.00 0.00 37.47 2.85
79 80 3.751698 AGTCAGGCTTTCCGTCAATTAAC 59.248 43.478 0.00 0.00 37.47 2.01
80 81 4.015872 AGTCAGGCTTTCCGTCAATTAA 57.984 40.909 0.00 0.00 37.47 1.40
81 82 3.695830 AGTCAGGCTTTCCGTCAATTA 57.304 42.857 0.00 0.00 37.47 1.40
82 83 2.568623 AGTCAGGCTTTCCGTCAATT 57.431 45.000 0.00 0.00 37.47 2.32
83 84 3.695830 TTAGTCAGGCTTTCCGTCAAT 57.304 42.857 0.00 0.00 37.47 2.57
84 85 3.478857 TTTAGTCAGGCTTTCCGTCAA 57.521 42.857 0.00 0.00 37.47 3.18
85 86 3.135994 GTTTTAGTCAGGCTTTCCGTCA 58.864 45.455 0.00 0.00 37.47 4.35
86 87 2.483106 GGTTTTAGTCAGGCTTTCCGTC 59.517 50.000 0.00 0.00 37.47 4.79
87 88 2.501261 GGTTTTAGTCAGGCTTTCCGT 58.499 47.619 0.00 0.00 37.47 4.69
88 89 1.463444 CGGTTTTAGTCAGGCTTTCCG 59.537 52.381 0.00 0.00 37.47 4.30
89 90 2.774687 TCGGTTTTAGTCAGGCTTTCC 58.225 47.619 0.00 0.00 0.00 3.13
90 91 4.000988 TCATCGGTTTTAGTCAGGCTTTC 58.999 43.478 0.00 0.00 0.00 2.62
91 92 4.015872 TCATCGGTTTTAGTCAGGCTTT 57.984 40.909 0.00 0.00 0.00 3.51
92 93 3.695830 TCATCGGTTTTAGTCAGGCTT 57.304 42.857 0.00 0.00 0.00 4.35
93 94 3.244422 TGTTCATCGGTTTTAGTCAGGCT 60.244 43.478 0.00 0.00 0.00 4.58
94 95 3.071479 TGTTCATCGGTTTTAGTCAGGC 58.929 45.455 0.00 0.00 0.00 4.85
95 96 3.435671 GGTGTTCATCGGTTTTAGTCAGG 59.564 47.826 0.00 0.00 0.00 3.86
96 97 4.315803 AGGTGTTCATCGGTTTTAGTCAG 58.684 43.478 0.00 0.00 0.00 3.51
97 98 4.345859 AGGTGTTCATCGGTTTTAGTCA 57.654 40.909 0.00 0.00 0.00 3.41
98 99 5.717119 TCTAGGTGTTCATCGGTTTTAGTC 58.283 41.667 0.00 0.00 0.00 2.59
99 100 5.733620 TCTAGGTGTTCATCGGTTTTAGT 57.266 39.130 0.00 0.00 0.00 2.24
100 101 7.762615 TGTAATCTAGGTGTTCATCGGTTTTAG 59.237 37.037 0.00 0.00 0.00 1.85
101 102 7.613585 TGTAATCTAGGTGTTCATCGGTTTTA 58.386 34.615 0.00 0.00 0.00 1.52
102 103 6.469410 TGTAATCTAGGTGTTCATCGGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
103 104 6.045072 TGTAATCTAGGTGTTCATCGGTTT 57.955 37.500 0.00 0.00 0.00 3.27
104 105 5.661458 CTGTAATCTAGGTGTTCATCGGTT 58.339 41.667 0.00 0.00 0.00 4.44
105 106 4.441634 GCTGTAATCTAGGTGTTCATCGGT 60.442 45.833 0.00 0.00 0.00 4.69
106 107 4.051922 GCTGTAATCTAGGTGTTCATCGG 58.948 47.826 0.00 0.00 0.00 4.18
107 108 4.504461 GTGCTGTAATCTAGGTGTTCATCG 59.496 45.833 0.00 0.00 0.00 3.84
108 109 5.292101 GTGTGCTGTAATCTAGGTGTTCATC 59.708 44.000 0.00 0.00 0.00 2.92
133 134 5.980715 TCGCATGTTTTCCTTTTCTTTTACC 59.019 36.000 0.00 0.00 0.00 2.85
154 155 3.236816 CACATGACCTGTTTTTGATCGC 58.763 45.455 0.00 0.00 35.29 4.58
155 156 4.024133 TGACACATGACCTGTTTTTGATCG 60.024 41.667 0.00 0.00 35.29 3.69
191 192 1.738030 GCTGATTGCTTCATGCCAACC 60.738 52.381 0.00 0.00 42.00 3.77
192 193 1.636988 GCTGATTGCTTCATGCCAAC 58.363 50.000 0.00 0.00 42.00 3.77
203 204 1.818642 AACAGAGGTGAGCTGATTGC 58.181 50.000 0.00 0.00 43.29 3.56
204 205 4.763073 TGATAACAGAGGTGAGCTGATTG 58.237 43.478 0.00 0.00 36.86 2.67
205 206 5.426689 TTGATAACAGAGGTGAGCTGATT 57.573 39.130 0.00 0.00 36.86 2.57
206 207 5.046014 ACTTTGATAACAGAGGTGAGCTGAT 60.046 40.000 0.00 0.00 36.86 2.90
207 208 4.284490 ACTTTGATAACAGAGGTGAGCTGA 59.716 41.667 0.00 0.00 36.86 4.26
208 209 4.573900 ACTTTGATAACAGAGGTGAGCTG 58.426 43.478 0.00 0.00 39.26 4.24
209 210 4.899352 ACTTTGATAACAGAGGTGAGCT 57.101 40.909 0.00 0.00 33.32 4.09
210 211 7.387948 TCTTTTACTTTGATAACAGAGGTGAGC 59.612 37.037 0.00 0.00 33.32 4.26
211 212 8.833231 TCTTTTACTTTGATAACAGAGGTGAG 57.167 34.615 0.00 0.00 33.32 3.51
212 213 9.621629 TTTCTTTTACTTTGATAACAGAGGTGA 57.378 29.630 0.00 0.00 33.32 4.02
234 235 6.759827 GCATGCATGGAGTAAAAATGATTTCT 59.240 34.615 27.34 0.00 0.00 2.52
235 236 6.535865 TGCATGCATGGAGTAAAAATGATTTC 59.464 34.615 27.34 5.53 0.00 2.17
267 278 3.005578 GCTTATGGTCCGAGGTAGTTAGG 59.994 52.174 0.00 0.00 0.00 2.69
283 294 3.686726 AGAAGCTCGTCCTTTTGCTTATG 59.313 43.478 0.00 0.00 44.47 1.90
288 299 3.355626 AAAAGAAGCTCGTCCTTTTGC 57.644 42.857 12.33 0.00 38.31 3.68
295 306 5.652744 TTACTGTGAAAAAGAAGCTCGTC 57.347 39.130 0.00 0.00 0.00 4.20
310 321 1.512926 AAGCTCGTGCCTTTACTGTG 58.487 50.000 5.73 0.00 40.80 3.66
322 333 1.211190 GGACGTCGGTTAAGCTCGT 59.789 57.895 19.00 19.00 37.45 4.18
359 370 2.351276 GGGCCTTCGGAAAGCTGA 59.649 61.111 10.86 0.00 0.00 4.26
368 379 4.821589 GTCGAGCCTGGGCCTTCG 62.822 72.222 14.41 14.41 43.17 3.79
386 397 2.125552 TTCATGCCGACCTGAGCG 60.126 61.111 0.00 0.00 0.00 5.03
387 398 1.078848 AGTTCATGCCGACCTGAGC 60.079 57.895 0.00 0.00 0.00 4.26
414 425 3.528597 TGTGGTTAAAACTTGTTGGCC 57.471 42.857 0.00 0.00 0.00 5.36
427 438 2.281622 CGGGCGGGTTTGTGGTTA 60.282 61.111 0.00 0.00 0.00 2.85
443 454 4.351938 TGTGAAGGCGACCGACCG 62.352 66.667 0.00 0.00 0.00 4.79
444 455 2.737376 GTGTGAAGGCGACCGACC 60.737 66.667 0.00 0.00 0.00 4.79
445 456 3.103911 CGTGTGAAGGCGACCGAC 61.104 66.667 0.00 0.00 0.00 4.79
446 457 3.547249 GACGTGTGAAGGCGACCGA 62.547 63.158 0.00 0.00 0.00 4.69
454 465 2.430244 CCGGACGGACGTGTGAAG 60.430 66.667 4.40 0.00 37.50 3.02
487 498 2.028130 CAAATGCCCGATGCTCCTC 58.972 57.895 0.00 0.00 42.00 3.71
531 558 2.194889 GGGGATCCTCGTCCGTCTC 61.195 68.421 12.58 0.00 39.26 3.36
533 560 2.123812 AGGGGATCCTCGTCCGTC 60.124 66.667 12.58 0.00 39.80 4.79
534 561 2.442272 CAGGGGATCCTCGTCCGT 60.442 66.667 12.58 0.00 42.67 4.69
535 562 3.917760 GCAGGGGATCCTCGTCCG 61.918 72.222 12.58 0.08 42.67 4.79
536 563 3.551407 GGCAGGGGATCCTCGTCC 61.551 72.222 12.58 10.58 42.67 4.79
537 564 3.917760 CGGCAGGGGATCCTCGTC 61.918 72.222 12.58 4.80 42.67 4.20
538 565 4.779733 ACGGCAGGGGATCCTCGT 62.780 66.667 12.58 11.06 42.67 4.18
539 566 4.227134 CACGGCAGGGGATCCTCG 62.227 72.222 12.58 5.37 42.67 4.63
540 567 4.554036 GCACGGCAGGGGATCCTC 62.554 72.222 12.58 7.90 42.67 3.71
569 596 2.081212 CACGAGTCAGCGACGGAAC 61.081 63.158 0.00 0.00 37.67 3.62
570 597 2.254350 CACGAGTCAGCGACGGAA 59.746 61.111 0.00 0.00 37.67 4.30
571 598 2.976350 ACACGAGTCAGCGACGGA 60.976 61.111 0.00 0.00 37.67 4.69
572 599 2.801162 CACACGAGTCAGCGACGG 60.801 66.667 0.00 3.26 37.67 4.79
573 600 3.461982 GCACACGAGTCAGCGACG 61.462 66.667 0.00 0.00 37.67 5.12
574 601 3.106407 GGCACACGAGTCAGCGAC 61.106 66.667 0.00 1.15 34.83 5.19
575 602 4.357947 GGGCACACGAGTCAGCGA 62.358 66.667 0.00 0.00 34.83 4.93
577 604 4.357947 TCGGGCACACGAGTCAGC 62.358 66.667 0.00 0.00 38.06 4.26
578 605 2.430921 GTCGGGCACACGAGTCAG 60.431 66.667 0.00 0.00 44.42 3.51
579 606 2.910479 AGTCGGGCACACGAGTCA 60.910 61.111 0.00 0.00 42.41 3.41
580 607 2.416244 TTCAGTCGGGCACACGAGTC 62.416 60.000 0.00 0.00 44.06 3.36
581 608 2.023414 TTTCAGTCGGGCACACGAGT 62.023 55.000 0.00 0.00 46.58 4.18
582 609 1.300620 TTTCAGTCGGGCACACGAG 60.301 57.895 0.00 0.00 44.42 4.18
583 610 1.593209 GTTTCAGTCGGGCACACGA 60.593 57.895 0.00 0.00 41.13 4.35
584 611 1.157870 AAGTTTCAGTCGGGCACACG 61.158 55.000 0.00 0.00 0.00 4.49
585 612 0.307760 CAAGTTTCAGTCGGGCACAC 59.692 55.000 0.00 0.00 0.00 3.82
586 613 0.179234 TCAAGTTTCAGTCGGGCACA 59.821 50.000 0.00 0.00 0.00 4.57
587 614 0.586802 GTCAAGTTTCAGTCGGGCAC 59.413 55.000 0.00 0.00 0.00 5.01
588 615 0.534203 GGTCAAGTTTCAGTCGGGCA 60.534 55.000 0.00 0.00 0.00 5.36
589 616 1.235281 GGGTCAAGTTTCAGTCGGGC 61.235 60.000 0.00 0.00 0.00 6.13
590 617 0.107831 TGGGTCAAGTTTCAGTCGGG 59.892 55.000 0.00 0.00 0.00 5.14
591 618 1.226746 GTGGGTCAAGTTTCAGTCGG 58.773 55.000 0.00 0.00 0.00 4.79
592 619 1.202651 AGGTGGGTCAAGTTTCAGTCG 60.203 52.381 0.00 0.00 0.00 4.18
593 620 2.222027 CAGGTGGGTCAAGTTTCAGTC 58.778 52.381 0.00 0.00 0.00 3.51
594 621 1.564348 ACAGGTGGGTCAAGTTTCAGT 59.436 47.619 0.00 0.00 0.00 3.41
595 622 2.222027 GACAGGTGGGTCAAGTTTCAG 58.778 52.381 0.00 0.00 37.73 3.02
596 623 1.562008 TGACAGGTGGGTCAAGTTTCA 59.438 47.619 0.00 0.00 44.34 2.69
597 624 2.222027 CTGACAGGTGGGTCAAGTTTC 58.778 52.381 0.00 0.00 46.36 2.78
598 625 1.564348 ACTGACAGGTGGGTCAAGTTT 59.436 47.619 7.51 0.00 46.36 2.66
599 626 1.134098 CACTGACAGGTGGGTCAAGTT 60.134 52.381 7.51 0.00 46.36 2.66
600 627 0.469917 CACTGACAGGTGGGTCAAGT 59.530 55.000 7.51 0.00 46.36 3.16
601 628 3.312404 CACTGACAGGTGGGTCAAG 57.688 57.895 7.51 0.00 46.36 3.02
608 635 0.670546 CGTTAGGCCACTGACAGGTG 60.671 60.000 5.01 2.99 33.11 4.00
609 636 1.671742 CGTTAGGCCACTGACAGGT 59.328 57.895 5.01 0.00 33.11 4.00
610 637 1.079127 CCGTTAGGCCACTGACAGG 60.079 63.158 5.01 0.00 33.11 4.00
611 638 4.598257 CCGTTAGGCCACTGACAG 57.402 61.111 5.01 0.00 33.11 3.51
629 656 4.111016 TCTGACGTACGGCGCCTG 62.111 66.667 26.68 20.24 46.11 4.85
630 657 3.812019 CTCTGACGTACGGCGCCT 61.812 66.667 26.68 14.27 46.11 5.52
631 658 4.849329 CCTCTGACGTACGGCGCC 62.849 72.222 19.07 19.07 46.11 6.53
632 659 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
634 661 1.935327 AAGCTCCTCTGACGTACGGC 61.935 60.000 21.06 18.72 0.00 5.68
635 662 0.099082 GAAGCTCCTCTGACGTACGG 59.901 60.000 21.06 1.50 0.00 4.02
636 663 0.099082 GGAAGCTCCTCTGACGTACG 59.901 60.000 15.01 15.01 32.53 3.67
637 664 1.465794 AGGAAGCTCCTCTGACGTAC 58.534 55.000 0.00 0.00 45.66 3.67
638 665 3.981051 AGGAAGCTCCTCTGACGTA 57.019 52.632 0.00 0.00 45.66 3.57
639 666 4.854587 AGGAAGCTCCTCTGACGT 57.145 55.556 0.00 0.00 45.66 4.34
647 674 2.683933 TCCGTGGGAGGAAGCTCC 60.684 66.667 0.00 0.00 42.62 4.70
648 675 2.896443 CTCCGTGGGAGGAAGCTC 59.104 66.667 3.68 0.00 45.43 4.09
656 683 2.756760 GTTGTAGTATGTCTCCGTGGGA 59.243 50.000 0.00 0.00 0.00 4.37
657 684 2.758979 AGTTGTAGTATGTCTCCGTGGG 59.241 50.000 0.00 0.00 0.00 4.61
658 685 4.497674 GCTAGTTGTAGTATGTCTCCGTGG 60.498 50.000 0.00 0.00 0.00 4.94
659 686 4.497674 GGCTAGTTGTAGTATGTCTCCGTG 60.498 50.000 0.00 0.00 0.00 4.94
660 687 3.631227 GGCTAGTTGTAGTATGTCTCCGT 59.369 47.826 0.00 0.00 0.00 4.69
661 688 3.630769 TGGCTAGTTGTAGTATGTCTCCG 59.369 47.826 0.00 0.00 0.00 4.63
662 689 5.593010 CTTGGCTAGTTGTAGTATGTCTCC 58.407 45.833 0.00 0.00 0.00 3.71
663 690 5.044558 GCTTGGCTAGTTGTAGTATGTCTC 58.955 45.833 0.00 0.00 0.00 3.36
664 691 4.141914 GGCTTGGCTAGTTGTAGTATGTCT 60.142 45.833 0.00 0.00 0.00 3.41
665 692 4.120589 GGCTTGGCTAGTTGTAGTATGTC 58.879 47.826 0.00 0.00 0.00 3.06
673 700 1.302511 CCGTGGCTTGGCTAGTTGT 60.303 57.895 0.00 0.00 0.00 3.32
817 849 1.442148 GGTGGAGCTAGGCTAACCG 59.558 63.158 0.00 0.00 39.88 4.44
818 850 1.697082 GGGGTGGAGCTAGGCTAACC 61.697 65.000 12.63 12.63 41.77 2.85
819 851 1.697082 GGGGGTGGAGCTAGGCTAAC 61.697 65.000 0.00 0.00 39.88 2.34
896 933 2.354805 GGGGGAGCTGCGTATTTATAGG 60.355 54.545 0.00 0.00 0.00 2.57
986 1024 2.412323 GCCATTGCTGCTGCTGCTA 61.412 57.895 27.67 22.25 40.48 3.49
987 1025 3.760035 GCCATTGCTGCTGCTGCT 61.760 61.111 27.67 9.87 40.48 4.24
1060 1098 3.181470 GCATTACCTGAGAAGAGGAGGAC 60.181 52.174 0.00 0.00 36.51 3.85
1070 1108 4.776435 TTCATCCATGCATTACCTGAGA 57.224 40.909 0.00 0.00 0.00 3.27
1103 1141 2.339769 GGCCAAGGTATCTATCAGGGT 58.660 52.381 0.00 0.00 0.00 4.34
1104 1142 1.276421 CGGCCAAGGTATCTATCAGGG 59.724 57.143 2.24 0.00 0.00 4.45
1105 1143 1.276421 CCGGCCAAGGTATCTATCAGG 59.724 57.143 2.24 0.00 0.00 3.86
1106 1144 2.028930 GTCCGGCCAAGGTATCTATCAG 60.029 54.545 2.24 0.00 0.00 2.90
1108 1146 1.067776 CGTCCGGCCAAGGTATCTATC 60.068 57.143 2.24 0.00 0.00 2.08
1109 1147 0.966920 CGTCCGGCCAAGGTATCTAT 59.033 55.000 2.24 0.00 0.00 1.98
1110 1148 0.396139 ACGTCCGGCCAAGGTATCTA 60.396 55.000 2.24 0.00 0.00 1.98
1111 1149 1.673808 GACGTCCGGCCAAGGTATCT 61.674 60.000 3.51 0.00 0.00 1.98
1112 1150 1.227176 GACGTCCGGCCAAGGTATC 60.227 63.158 3.51 0.00 0.00 2.24
1113 1151 2.897972 GACGTCCGGCCAAGGTAT 59.102 61.111 3.51 0.00 0.00 2.73
1114 1152 3.751246 CGACGTCCGGCCAAGGTA 61.751 66.667 10.58 0.00 33.91 3.08
1145 1183 4.161333 CACGCACATTCCAAGAAAATCTC 58.839 43.478 0.00 0.00 0.00 2.75
1284 1327 2.124736 TAGATGCGCACCTTGCCC 60.125 61.111 12.97 0.00 41.12 5.36
1775 1818 9.672673 GTAAAGAGGCATGTATATATGTTGGAT 57.327 33.333 10.72 0.00 0.00 3.41
1777 1820 9.507329 AAGTAAAGAGGCATGTATATATGTTGG 57.493 33.333 10.72 0.00 0.00 3.77
1809 1855 7.245604 CGTGTGACTACGTGGCATATATATTA 58.754 38.462 0.00 0.00 39.13 0.98
1811 1857 5.637809 CGTGTGACTACGTGGCATATATAT 58.362 41.667 0.00 0.00 39.13 0.86
1814 1860 3.343380 CGTGTGACTACGTGGCATATA 57.657 47.619 0.00 0.00 39.13 0.86
1826 1872 1.881252 GCCAACGACACGTGTGACT 60.881 57.895 28.82 6.55 39.99 3.41
1827 1873 1.426041 AAGCCAACGACACGTGTGAC 61.426 55.000 28.82 11.94 39.99 3.67
1828 1874 0.741574 AAAGCCAACGACACGTGTGA 60.742 50.000 28.82 0.00 39.99 3.58
1843 1889 0.238553 GGCTTCCACGTCAGAAAAGC 59.761 55.000 7.85 7.85 41.18 3.51
1845 1891 1.305201 GTGGCTTCCACGTCAGAAAA 58.695 50.000 0.00 0.00 44.95 2.29
1935 1981 2.383527 GCTCGTGTACTGCAGGTGC 61.384 63.158 19.93 8.36 42.46 5.01
2093 2139 1.909781 AGGTTCCGGTTGTAGGCGA 60.910 57.895 0.00 0.00 0.00 5.54
2097 2143 0.673644 CCAGCAGGTTCCGGTTGTAG 60.674 60.000 0.00 0.00 0.00 2.74
2224 2270 1.226888 GGTAGAGGCCGTAGTTGCG 60.227 63.158 0.00 0.00 0.00 4.85
2226 2272 0.179108 GCTGGTAGAGGCCGTAGTTG 60.179 60.000 0.00 0.00 0.00 3.16
2342 2388 1.375908 GAATGAGCGGCACTGACCA 60.376 57.895 1.45 0.00 0.00 4.02
2400 2446 5.752650 TGCTGTAGTACTATGTACTCCAGT 58.247 41.667 22.28 0.00 35.01 4.00
2409 2455 9.620259 TCCTGATAGATATGCTGTAGTACTATG 57.380 37.037 5.75 3.87 0.00 2.23
2411 2457 9.839817 GATCCTGATAGATATGCTGTAGTACTA 57.160 37.037 0.00 0.00 0.00 1.82
2412 2458 8.332487 TGATCCTGATAGATATGCTGTAGTACT 58.668 37.037 0.00 0.00 0.00 2.73
2413 2459 8.402472 GTGATCCTGATAGATATGCTGTAGTAC 58.598 40.741 0.00 0.00 0.00 2.73
2414 2460 7.281100 CGTGATCCTGATAGATATGCTGTAGTA 59.719 40.741 0.00 0.00 0.00 1.82
2415 2461 6.094742 CGTGATCCTGATAGATATGCTGTAGT 59.905 42.308 0.00 0.00 0.00 2.73
2416 2462 6.493978 CGTGATCCTGATAGATATGCTGTAG 58.506 44.000 0.00 0.00 0.00 2.74
2442 2498 3.893200 TCTCTGACTGACCGAAAAAGGTA 59.107 43.478 0.00 0.00 46.09 3.08
2470 2526 6.072175 TGCAAAATCTTTACCACTGTATGACC 60.072 38.462 0.00 0.00 0.00 4.02
2597 2659 7.331193 GCCACTTTCGTTTAGATAAGAAGAAGA 59.669 37.037 0.00 0.00 0.00 2.87
2598 2660 7.332182 AGCCACTTTCGTTTAGATAAGAAGAAG 59.668 37.037 0.00 0.00 0.00 2.85
2599 2661 7.159372 AGCCACTTTCGTTTAGATAAGAAGAA 58.841 34.615 0.00 0.00 0.00 2.52
2600 2662 6.698380 AGCCACTTTCGTTTAGATAAGAAGA 58.302 36.000 0.00 0.00 0.00 2.87
2601 2663 6.969828 AGCCACTTTCGTTTAGATAAGAAG 57.030 37.500 0.00 0.00 0.00 2.85
2602 2664 7.544566 CACTAGCCACTTTCGTTTAGATAAGAA 59.455 37.037 0.00 0.00 0.00 2.52
2603 2665 7.033791 CACTAGCCACTTTCGTTTAGATAAGA 58.966 38.462 0.00 0.00 0.00 2.10
2613 2677 0.320697 GGACCACTAGCCACTTTCGT 59.679 55.000 0.00 0.00 0.00 3.85
2633 2697 2.010145 ACTACGTGCATGGACATCAC 57.990 50.000 18.05 4.32 0.00 3.06
2698 2765 1.363744 GGTGCCTTGTTGATCTCTCG 58.636 55.000 0.00 0.00 0.00 4.04
2722 2789 9.290988 TGATTAGTAATTTCTTTACTTGGCACA 57.709 29.630 3.58 0.00 46.75 4.57
2723 2790 9.774742 CTGATTAGTAATTTCTTTACTTGGCAC 57.225 33.333 3.58 0.00 46.75 5.01
2724 2791 8.458843 GCTGATTAGTAATTTCTTTACTTGGCA 58.541 33.333 3.58 0.00 46.75 4.92
2725 2792 8.458843 TGCTGATTAGTAATTTCTTTACTTGGC 58.541 33.333 3.58 3.47 46.75 4.52
2742 2809 2.843077 CGTGCTTGTGTTGCTGATTAG 58.157 47.619 0.00 0.00 0.00 1.73
2743 2810 1.069296 GCGTGCTTGTGTTGCTGATTA 60.069 47.619 0.00 0.00 0.00 1.75
2744 2811 0.318107 GCGTGCTTGTGTTGCTGATT 60.318 50.000 0.00 0.00 0.00 2.57
2796 2863 2.636830 CAATTCAGCTAGGTCACTGGG 58.363 52.381 0.00 0.00 34.57 4.45
2797 2864 2.012673 GCAATTCAGCTAGGTCACTGG 58.987 52.381 0.00 0.00 34.57 4.00
2822 2889 2.024080 TGCAAGCAAGGGGAAGGAATAT 60.024 45.455 0.00 0.00 0.00 1.28
2828 2895 1.909700 TAAGTGCAAGCAAGGGGAAG 58.090 50.000 0.00 0.00 0.00 3.46
2896 2963 2.387757 TCTTGGTGCTTTTTCTGCCTT 58.612 42.857 0.00 0.00 0.00 4.35
2897 2964 2.071778 TCTTGGTGCTTTTTCTGCCT 57.928 45.000 0.00 0.00 0.00 4.75
2898 2965 2.888834 TTCTTGGTGCTTTTTCTGCC 57.111 45.000 0.00 0.00 0.00 4.85
2899 2966 2.541346 GCTTTCTTGGTGCTTTTTCTGC 59.459 45.455 0.00 0.00 0.00 4.26
2900 2967 3.784338 TGCTTTCTTGGTGCTTTTTCTG 58.216 40.909 0.00 0.00 0.00 3.02
2901 2968 4.470334 TTGCTTTCTTGGTGCTTTTTCT 57.530 36.364 0.00 0.00 0.00 2.52
2902 2969 4.869861 TCTTTGCTTTCTTGGTGCTTTTTC 59.130 37.500 0.00 0.00 0.00 2.29
2925 2992 3.656751 ACTAGATATGACCCCTCGTAGGT 59.343 47.826 0.00 0.00 41.50 3.08
2927 2994 8.266473 AGTATTACTAGATATGACCCCTCGTAG 58.734 40.741 0.00 0.00 0.00 3.51
2928 2995 8.155620 AGTATTACTAGATATGACCCCTCGTA 57.844 38.462 0.00 0.00 0.00 3.43
2929 2996 7.030234 AGTATTACTAGATATGACCCCTCGT 57.970 40.000 0.00 0.00 0.00 4.18
2930 2997 7.628794 GCAAGTATTACTAGATATGACCCCTCG 60.629 44.444 0.00 0.00 0.00 4.63
2931 2998 7.178628 TGCAAGTATTACTAGATATGACCCCTC 59.821 40.741 0.00 0.00 0.00 4.30
2958 3025 3.867493 GCTGATTATTCCTTTTTGCTGGC 59.133 43.478 0.00 0.00 0.00 4.85
2962 3029 3.867493 GCCAGCTGATTATTCCTTTTTGC 59.133 43.478 17.39 0.07 0.00 3.68
2981 3048 2.523657 TGGTGCATGCAAAGGCCA 60.524 55.556 24.58 22.21 40.13 5.36
2982 3049 2.047939 GTGGTGCATGCAAAGGCC 60.048 61.111 24.58 19.68 40.13 5.19
3000 3067 0.778815 GAGTGTGAACTCGAAGCGTG 59.221 55.000 0.00 0.00 0.00 5.34
3021 3089 0.693049 AGTTTCCTCCAAGGCACGAT 59.307 50.000 0.00 0.00 34.61 3.73
3027 3095 2.224305 ACTCGTGAAGTTTCCTCCAAGG 60.224 50.000 0.00 0.00 33.03 3.61
3087 3161 4.546674 TCTCCTTGGCTGTGATATGACTA 58.453 43.478 0.00 0.00 0.00 2.59
3088 3162 3.378512 TCTCCTTGGCTGTGATATGACT 58.621 45.455 0.00 0.00 0.00 3.41
3089 3163 3.827008 TCTCCTTGGCTGTGATATGAC 57.173 47.619 0.00 0.00 0.00 3.06
3090 3164 4.033009 TCTTCTCCTTGGCTGTGATATGA 58.967 43.478 0.00 0.00 0.00 2.15
3091 3165 4.100653 TCTCTTCTCCTTGGCTGTGATATG 59.899 45.833 0.00 0.00 0.00 1.78
3092 3166 4.293494 TCTCTTCTCCTTGGCTGTGATAT 58.707 43.478 0.00 0.00 0.00 1.63
3093 3167 3.713003 TCTCTTCTCCTTGGCTGTGATA 58.287 45.455 0.00 0.00 0.00 2.15
3094 3168 2.544721 TCTCTTCTCCTTGGCTGTGAT 58.455 47.619 0.00 0.00 0.00 3.06
3095 3169 2.015456 TCTCTTCTCCTTGGCTGTGA 57.985 50.000 0.00 0.00 0.00 3.58
3096 3170 3.347077 AATCTCTTCTCCTTGGCTGTG 57.653 47.619 0.00 0.00 0.00 3.66
3097 3171 3.586618 AGAAATCTCTTCTCCTTGGCTGT 59.413 43.478 0.00 0.00 0.00 4.40
3098 3172 4.219264 AGAAATCTCTTCTCCTTGGCTG 57.781 45.455 0.00 0.00 0.00 4.85
3099 3173 4.925390 AAGAAATCTCTTCTCCTTGGCT 57.075 40.909 0.00 0.00 37.31 4.75
3100 3174 8.916628 ATATTAAGAAATCTCTTCTCCTTGGC 57.083 34.615 0.00 0.00 41.19 4.52
3109 3183 7.283127 TGCGCAAGGAATATTAAGAAATCTCTT 59.717 33.333 8.16 0.00 41.00 2.85
3140 3243 2.163818 TTCCCTACTCTTTGTGTGCG 57.836 50.000 0.00 0.00 0.00 5.34
3152 3255 8.021159 AAGGAACACCTTGGAATTATTCCCTAC 61.021 40.741 20.01 4.58 41.78 3.18
3161 3264 4.473196 ACCAAAAAGGAACACCTTGGAATT 59.527 37.500 11.06 0.00 42.43 2.17
3169 3272 1.951602 AGCGTACCAAAAAGGAACACC 59.048 47.619 0.00 0.00 41.22 4.16
3195 3300 1.203065 GTCGGGAATACTAAACCGCG 58.797 55.000 0.00 0.00 45.58 6.46
3214 3319 1.094785 AATCATGAAAGTTCGGCCCG 58.905 50.000 0.00 0.00 0.00 6.13
3235 3340 2.226330 TGCACCTAACGCTGATTTGTT 58.774 42.857 0.00 0.00 0.00 2.83
3285 3391 4.114073 TCCACTAACAACACGTACACTTG 58.886 43.478 0.00 0.00 0.00 3.16
3320 3428 6.183360 GGTGGTCTATGCGATTAATTATCAGC 60.183 42.308 0.00 0.00 35.08 4.26
3334 3442 1.009829 CTGCTTTCGGTGGTCTATGC 58.990 55.000 0.00 0.00 0.00 3.14
3336 3444 1.899814 TCACTGCTTTCGGTGGTCTAT 59.100 47.619 4.64 0.00 46.92 1.98
3341 3449 3.252215 TGTTTTATCACTGCTTTCGGTGG 59.748 43.478 4.64 0.00 46.92 4.61
3354 3462 9.004717 TCGGTGAAAACTAATCATGTTTTATCA 57.995 29.630 4.85 0.00 44.48 2.15
3358 3466 8.410141 TCTTTCGGTGAAAACTAATCATGTTTT 58.590 29.630 4.56 4.56 46.30 2.43
3359 3467 7.860872 GTCTTTCGGTGAAAACTAATCATGTTT 59.139 33.333 0.00 0.00 39.03 2.83
3472 3580 6.314784 GTGAAACATGTTAGCTCATACAACC 58.685 40.000 12.39 0.00 36.32 3.77
3521 3629 0.759346 ACAGGCTCGTCAAGTCCTTT 59.241 50.000 0.00 0.00 31.54 3.11
3543 3651 0.759959 ATGGCCAGAGCTGAGATGAG 59.240 55.000 13.05 0.00 39.73 2.90
3546 3654 0.400237 AGGATGGCCAGAGCTGAGAT 60.400 55.000 13.05 0.00 39.73 2.75
3613 3721 2.007113 CTTGCTTGCATATGGCCGCA 62.007 55.000 4.56 0.00 43.36 5.69
3627 3735 1.050204 TCAAGGCCATTTTGCTTGCT 58.950 45.000 5.01 0.00 0.00 3.91
3721 3829 5.981174 TCTGTGATAAGATGACATGCAAGA 58.019 37.500 0.00 0.00 0.00 3.02
3764 3872 3.995506 AAGGGCTACCACATGGCGC 62.996 63.158 0.00 0.00 46.73 6.53
3765 3873 0.107410 TAAAGGGCTACCACATGGCG 60.107 55.000 0.00 0.00 40.13 5.69
3791 3899 3.771577 TGGGAAAGTGTCTTTCTCTCC 57.228 47.619 18.67 13.16 30.48 3.71
3913 4024 2.342179 TGCGGTGTGTGTGTATGTATG 58.658 47.619 0.00 0.00 0.00 2.39
3914 4025 2.753055 TGCGGTGTGTGTGTATGTAT 57.247 45.000 0.00 0.00 0.00 2.29
3918 4029 1.234615 GCCTTGCGGTGTGTGTGTAT 61.235 55.000 0.00 0.00 0.00 2.29
3939 4050 1.594331 AGTGTTTCGGGCTTTCAGAC 58.406 50.000 0.00 0.00 0.00 3.51
3950 4061 0.738389 AGTTGTGGCCAAGTGTTTCG 59.262 50.000 7.24 0.00 32.93 3.46
3990 4101 1.902765 GCCCCCTGCAATGGAAAAGG 61.903 60.000 3.50 0.00 40.77 3.11
3991 4102 1.598517 GCCCCCTGCAATGGAAAAG 59.401 57.895 3.50 0.00 40.77 2.27
4006 4117 2.554142 GCATATGCTTTCCTTTTGCCC 58.446 47.619 20.64 0.00 38.21 5.36
4023 4134 1.264749 TTCTCTGGCCTACACCGCAT 61.265 55.000 3.32 0.00 0.00 4.73
4025 4136 0.321298 TTTTCTCTGGCCTACACCGC 60.321 55.000 3.32 0.00 0.00 5.68
4026 4137 2.076863 CTTTTTCTCTGGCCTACACCG 58.923 52.381 3.32 0.00 0.00 4.94
4050 4161 1.221414 GCCTTCCACATCGCATAGAC 58.779 55.000 0.00 0.00 0.00 2.59
4054 4165 3.909662 GTGCCTTCCACATCGCAT 58.090 55.556 0.00 0.00 44.06 4.73
4086 4197 3.760035 CCACCCCACGACCTCGAG 61.760 72.222 5.13 5.13 43.02 4.04
4087 4198 4.608774 ACCACCCCACGACCTCGA 62.609 66.667 0.78 0.00 43.02 4.04
4088 4199 4.373116 CACCACCCCACGACCTCG 62.373 72.222 0.00 0.00 46.33 4.63
4095 4206 3.580319 AGAAGCCCACCACCCCAC 61.580 66.667 0.00 0.00 0.00 4.61
4096 4207 3.579302 CAGAAGCCCACCACCCCA 61.579 66.667 0.00 0.00 0.00 4.96
4097 4208 4.366684 CCAGAAGCCCACCACCCC 62.367 72.222 0.00 0.00 0.00 4.95
4098 4209 3.256960 TCCAGAAGCCCACCACCC 61.257 66.667 0.00 0.00 0.00 4.61
4099 4210 2.034221 GTCCAGAAGCCCACCACC 59.966 66.667 0.00 0.00 0.00 4.61
4122 4233 0.928229 CCTCGCAGTATTTACACGCC 59.072 55.000 0.00 0.00 0.00 5.68
4134 4245 2.815647 GACGCCTTTCCCTCGCAG 60.816 66.667 0.00 0.00 0.00 5.18
4142 4253 0.317519 CCACAAAACGGACGCCTTTC 60.318 55.000 0.00 0.00 0.00 2.62
4182 4293 3.406595 CTTCCCCGCACATCTCCCC 62.407 68.421 0.00 0.00 0.00 4.81
4190 4301 1.144936 CTCTCCATCTTCCCCGCAC 59.855 63.158 0.00 0.00 0.00 5.34
4213 4324 4.699522 GAGCGTCGGCCACCCTTT 62.700 66.667 2.24 0.00 41.24 3.11
4356 4482 6.258947 CCTGAGCCTAGCTAGAACAAATAAAC 59.741 42.308 22.70 2.56 39.88 2.01
4371 4497 1.134280 CCACATGGAACCTGAGCCTAG 60.134 57.143 0.00 0.00 37.39 3.02
4372 4498 0.911769 CCACATGGAACCTGAGCCTA 59.088 55.000 0.00 0.00 37.39 3.93
4373 4499 1.687612 CCACATGGAACCTGAGCCT 59.312 57.895 0.00 0.00 37.39 4.58
4374 4500 2.048603 GCCACATGGAACCTGAGCC 61.049 63.158 0.87 0.00 37.39 4.70
4379 4505 0.994247 TCATCAGCCACATGGAACCT 59.006 50.000 0.87 0.00 37.39 3.50
4381 4507 2.646930 TCATCATCAGCCACATGGAAC 58.353 47.619 0.87 0.00 37.39 3.62
4382 4508 3.117813 TGATCATCATCAGCCACATGGAA 60.118 43.478 0.87 0.00 33.80 3.53
4395 4521 3.371273 CCCTCACACCAACTGATCATCAT 60.371 47.826 0.00 0.00 0.00 2.45
4419 4545 2.519377 TATTTACATCGACGCCCAGG 57.481 50.000 0.00 0.00 0.00 4.45
4461 4587 5.143916 ACAATCGCAACGAGAATCATAAC 57.856 39.130 0.00 0.00 39.91 1.89
4474 4600 4.803088 CAGGAAAAGAAACAACAATCGCAA 59.197 37.500 0.00 0.00 0.00 4.85
4482 4608 7.287950 GTGAACAAAACAGGAAAAGAAACAAC 58.712 34.615 0.00 0.00 0.00 3.32
4484 4610 5.631512 CGTGAACAAAACAGGAAAAGAAACA 59.368 36.000 0.00 0.00 0.00 2.83
4485 4611 5.061684 CCGTGAACAAAACAGGAAAAGAAAC 59.938 40.000 0.00 0.00 0.00 2.78
4495 4622 0.248866 GGCCACCGTGAACAAAACAG 60.249 55.000 0.00 0.00 0.00 3.16
4510 4637 0.953471 CTCAATCGAAACACGGGCCA 60.953 55.000 4.39 0.00 42.82 5.36
4514 4641 1.062587 GCCATCTCAATCGAAACACGG 59.937 52.381 0.00 0.00 42.82 4.94
4515 4642 1.731709 TGCCATCTCAATCGAAACACG 59.268 47.619 0.00 0.00 44.09 4.49
4516 4643 3.829886 TTGCCATCTCAATCGAAACAC 57.170 42.857 0.00 0.00 0.00 3.32
4517 4644 3.758023 ACATTGCCATCTCAATCGAAACA 59.242 39.130 0.00 0.00 34.68 2.83
4518 4645 4.346129 GACATTGCCATCTCAATCGAAAC 58.654 43.478 0.00 0.00 34.68 2.78
4520 4647 2.945008 GGACATTGCCATCTCAATCGAA 59.055 45.455 0.00 0.00 34.68 3.71
4521 4648 2.171237 AGGACATTGCCATCTCAATCGA 59.829 45.455 0.00 0.00 34.68 3.59
4522 4649 2.569059 AGGACATTGCCATCTCAATCG 58.431 47.619 0.00 0.00 34.68 3.34
4536 4663 3.504906 CACATCAAGAACAGCAAGGACAT 59.495 43.478 0.00 0.00 0.00 3.06
4539 4666 3.490439 TCACATCAAGAACAGCAAGGA 57.510 42.857 0.00 0.00 0.00 3.36
4545 4672 6.195244 CAGTTTCGTTTTCACATCAAGAACAG 59.805 38.462 0.00 0.00 0.00 3.16
4550 4677 4.204978 GCACAGTTTCGTTTTCACATCAAG 59.795 41.667 0.00 0.00 0.00 3.02
4554 4681 2.223711 GGGCACAGTTTCGTTTTCACAT 60.224 45.455 0.00 0.00 0.00 3.21
4555 4682 1.133407 GGGCACAGTTTCGTTTTCACA 59.867 47.619 0.00 0.00 0.00 3.58
4558 4685 0.741915 TGGGGCACAGTTTCGTTTTC 59.258 50.000 0.00 0.00 0.00 2.29
4559 4686 0.458260 GTGGGGCACAGTTTCGTTTT 59.542 50.000 0.00 0.00 34.08 2.43
4571 4698 2.935481 CCCTTCCTCTGTGGGGCA 60.935 66.667 0.00 0.00 37.37 5.36
4574 4701 2.612115 AGCCCCTTCCTCTGTGGG 60.612 66.667 0.00 0.00 41.23 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.