Multiple sequence alignment - TraesCS7A01G347700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G347700 chr7A 100.000 1763 0 0 1 1763 510470457 510468695 0.000000e+00 3256
1 TraesCS7A01G347700 chr7A 90.366 737 67 3 1031 1763 510403175 510402439 0.000000e+00 965
2 TraesCS7A01G347700 chr7A 81.725 1078 123 32 543 1602 733576792 733575771 0.000000e+00 832
3 TraesCS7A01G347700 chr7A 100.000 377 0 0 2140 2516 510468318 510467942 0.000000e+00 697
4 TraesCS7A01G347700 chr7A 84.181 177 18 2 2274 2450 510402292 510402126 2.000000e-36 163
5 TraesCS7A01G347700 chr7D 87.144 1299 112 32 377 1655 422717795 422719058 0.000000e+00 1423
6 TraesCS7A01G347700 chr7D 82.752 974 111 30 552 1522 633512450 633513369 0.000000e+00 815
7 TraesCS7A01G347700 chr7D 90.726 248 16 3 1 248 422684968 422685208 8.680000e-85 324
8 TraesCS7A01G347700 chr7B 90.776 889 62 10 701 1578 439860002 439860881 0.000000e+00 1170
9 TraesCS7A01G347700 chr7B 85.128 390 18 19 1 361 439856522 439856900 1.840000e-96 363
10 TraesCS7A01G347700 chr7B 85.942 313 32 7 377 685 439859713 439860017 8.680000e-85 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G347700 chr7A 510467942 510470457 2515 True 1976.5 3256 100.0000 1 2516 2 chr7A.!!$R3 2515
1 TraesCS7A01G347700 chr7A 733575771 733576792 1021 True 832.0 832 81.7250 543 1602 1 chr7A.!!$R1 1059
2 TraesCS7A01G347700 chr7A 510402126 510403175 1049 True 564.0 965 87.2735 1031 2450 2 chr7A.!!$R2 1419
3 TraesCS7A01G347700 chr7D 422717795 422719058 1263 False 1423.0 1423 87.1440 377 1655 1 chr7D.!!$F2 1278
4 TraesCS7A01G347700 chr7D 633512450 633513369 919 False 815.0 815 82.7520 552 1522 1 chr7D.!!$F3 970
5 TraesCS7A01G347700 chr7B 439856522 439860881 4359 False 619.0 1170 87.2820 1 1578 3 chr7B.!!$F1 1577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 3241 0.03496 CTGACGGACTCCTCTCTCCA 60.035 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2340 5225 0.468226 ACCAACAGTCGGATGTGTGT 59.532 50.0 0.0 0.0 32.52 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 3.692406 GCGAGTCCCCGAACACCT 61.692 66.667 0.00 0.00 0.00 4.00
130 131 2.261671 CGAGTCCCCGAACACCTG 59.738 66.667 0.00 0.00 0.00 4.00
131 132 2.273179 CGAGTCCCCGAACACCTGA 61.273 63.158 0.00 0.00 0.00 3.86
132 133 1.292541 GAGTCCCCGAACACCTGAC 59.707 63.158 0.00 0.00 0.00 3.51
133 134 2.168666 GAGTCCCCGAACACCTGACC 62.169 65.000 0.00 0.00 0.00 4.02
134 135 2.926242 TCCCCGAACACCTGACCC 60.926 66.667 0.00 0.00 0.00 4.46
135 136 2.928396 CCCCGAACACCTGACCCT 60.928 66.667 0.00 0.00 0.00 4.34
136 137 2.347490 CCCGAACACCTGACCCTG 59.653 66.667 0.00 0.00 0.00 4.45
137 138 2.214216 CCCGAACACCTGACCCTGA 61.214 63.158 0.00 0.00 0.00 3.86
138 139 1.004918 CCGAACACCTGACCCTGAC 60.005 63.158 0.00 0.00 0.00 3.51
139 140 1.004918 CGAACACCTGACCCTGACC 60.005 63.158 0.00 0.00 0.00 4.02
143 144 0.399949 ACACCTGACCCTGACCTGAA 60.400 55.000 0.00 0.00 0.00 3.02
170 172 4.211125 TGCTTGACCTGTTTGTGGATAAA 58.789 39.130 0.00 0.00 0.00 1.40
176 178 4.944048 ACCTGTTTGTGGATAAAAGTTGC 58.056 39.130 0.00 0.00 0.00 4.17
243 245 4.469945 AGAATCTCAAATTCTACCCGGTCA 59.530 41.667 0.00 0.00 36.68 4.02
248 250 2.742053 CAAATTCTACCCGGTCACTGTG 59.258 50.000 0.00 0.17 0.00 3.66
251 253 0.896940 TCTACCCGGTCACTGTGGAC 60.897 60.000 8.11 5.04 37.06 4.02
252 254 0.898789 CTACCCGGTCACTGTGGACT 60.899 60.000 8.11 0.00 37.91 3.85
253 255 0.896940 TACCCGGTCACTGTGGACTC 60.897 60.000 8.11 0.00 37.91 3.36
254 256 2.258591 CCGGTCACTGTGGACTCG 59.741 66.667 8.11 9.92 37.91 4.18
255 257 2.561956 CCGGTCACTGTGGACTCGT 61.562 63.158 8.11 0.00 37.91 4.18
256 258 1.239296 CCGGTCACTGTGGACTCGTA 61.239 60.000 8.11 0.00 37.91 3.43
258 287 0.526662 GGTCACTGTGGACTCGTAGG 59.473 60.000 8.11 0.00 37.91 3.18
263 292 1.096416 CTGTGGACTCGTAGGGAGAC 58.904 60.000 0.00 0.00 46.23 3.36
275 304 3.991773 CGTAGGGAGACGATTTTGAAACA 59.008 43.478 0.00 0.00 45.82 2.83
316 345 0.994247 TGTTCCTCATGCATCCTGGT 59.006 50.000 0.00 0.00 0.00 4.00
318 347 1.747355 GTTCCTCATGCATCCTGGTTG 59.253 52.381 0.00 0.22 0.00 3.77
331 360 6.183360 TGCATCCTGGTTGAGTTAATTTTTGT 60.183 34.615 8.93 0.00 0.00 2.83
343 372 9.677567 TGAGTTAATTTTTGTTGCAGTCTATTC 57.322 29.630 0.00 0.00 0.00 1.75
352 383 8.579850 TTTGTTGCAGTCTATTCCAGATTTAT 57.420 30.769 0.00 0.00 35.17 1.40
398 3224 4.938080 ACTCTGTATACGGATTGAAGCTG 58.062 43.478 14.78 3.64 0.00 4.24
401 3227 3.702330 TGTATACGGATTGAAGCTGACG 58.298 45.455 0.00 0.00 0.00 4.35
405 3231 0.108615 CGGATTGAAGCTGACGGACT 60.109 55.000 0.00 0.00 0.00 3.85
413 3239 0.393808 AGCTGACGGACTCCTCTCTC 60.394 60.000 0.00 0.00 0.00 3.20
415 3241 0.034960 CTGACGGACTCCTCTCTCCA 60.035 60.000 0.00 0.00 0.00 3.86
416 3242 0.626382 TGACGGACTCCTCTCTCCAT 59.374 55.000 0.00 0.00 0.00 3.41
422 3248 2.358721 GGACTCCTCTCTCCATTCTCCA 60.359 54.545 0.00 0.00 0.00 3.86
427 3253 4.947883 TCCTCTCTCCATTCTCCACTAAA 58.052 43.478 0.00 0.00 0.00 1.85
439 3265 5.019657 TCTCCACTAAACTTTCTCCCCTA 57.980 43.478 0.00 0.00 0.00 3.53
444 3271 5.886474 CCACTAAACTTTCTCCCCTATTTCC 59.114 44.000 0.00 0.00 0.00 3.13
447 3274 7.769507 CACTAAACTTTCTCCCCTATTTCCTAC 59.230 40.741 0.00 0.00 0.00 3.18
450 3277 4.164413 ACTTTCTCCCCTATTTCCTACTGC 59.836 45.833 0.00 0.00 0.00 4.40
453 3280 0.396811 CCCCTATTTCCTACTGCGGG 59.603 60.000 0.00 0.00 0.00 6.13
456 3284 1.141053 CCTATTTCCTACTGCGGGCTT 59.859 52.381 0.00 0.00 0.00 4.35
462 3290 1.153349 CTACTGCGGGCTTTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
474 3302 2.497675 GCTTTCCTCCCCCTGATTTTTC 59.502 50.000 0.00 0.00 0.00 2.29
475 3303 3.778265 CTTTCCTCCCCCTGATTTTTCA 58.222 45.455 0.00 0.00 0.00 2.69
476 3304 3.913370 TTCCTCCCCCTGATTTTTCAA 57.087 42.857 0.00 0.00 0.00 2.69
477 3305 4.418395 TTCCTCCCCCTGATTTTTCAAT 57.582 40.909 0.00 0.00 0.00 2.57
478 3306 3.981212 TCCTCCCCCTGATTTTTCAATC 58.019 45.455 0.00 0.00 39.58 2.67
479 3307 2.689983 CCTCCCCCTGATTTTTCAATCG 59.310 50.000 0.00 0.00 41.77 3.34
480 3308 3.620488 CTCCCCCTGATTTTTCAATCGA 58.380 45.455 0.00 0.00 41.77 3.59
481 3309 4.016444 CTCCCCCTGATTTTTCAATCGAA 58.984 43.478 0.00 0.00 41.77 3.71
482 3310 4.609301 TCCCCCTGATTTTTCAATCGAAT 58.391 39.130 0.00 0.00 41.77 3.34
483 3311 4.402155 TCCCCCTGATTTTTCAATCGAATG 59.598 41.667 0.00 0.00 41.77 2.67
484 3312 4.160252 CCCCCTGATTTTTCAATCGAATGT 59.840 41.667 0.00 0.00 41.77 2.71
486 3314 5.577945 CCCCTGATTTTTCAATCGAATGTTG 59.422 40.000 0.00 0.00 41.77 3.33
487 3315 6.389091 CCCTGATTTTTCAATCGAATGTTGA 58.611 36.000 0.00 0.00 41.77 3.18
489 3317 8.190122 CCCTGATTTTTCAATCGAATGTTGATA 58.810 33.333 0.00 0.00 41.77 2.15
491 3319 9.778993 CTGATTTTTCAATCGAATGTTGATAGT 57.221 29.630 0.00 0.00 41.77 2.12
549 3379 5.067273 ACTCTCGTACATTAGAGATCCTGG 58.933 45.833 18.71 0.00 41.96 4.45
573 3404 6.015180 GGCCATCTAATTGAAAGCAATGGATA 60.015 38.462 0.00 0.00 43.71 2.59
598 3429 6.363065 AGATTGATCAACTGCATGGTCTTAT 58.637 36.000 11.07 0.00 31.51 1.73
599 3430 7.512130 AGATTGATCAACTGCATGGTCTTATA 58.488 34.615 11.07 0.00 31.51 0.98
601 3432 9.440773 GATTGATCAACTGCATGGTCTTATATA 57.559 33.333 11.07 0.00 31.51 0.86
602 3433 8.607441 TTGATCAACTGCATGGTCTTATATAC 57.393 34.615 3.38 0.00 31.51 1.47
603 3434 7.966812 TGATCAACTGCATGGTCTTATATACT 58.033 34.615 2.43 0.00 31.51 2.12
604 3435 8.432013 TGATCAACTGCATGGTCTTATATACTT 58.568 33.333 2.43 0.00 31.51 2.24
605 3436 8.839310 ATCAACTGCATGGTCTTATATACTTC 57.161 34.615 0.00 0.00 0.00 3.01
667 3498 5.788055 TCGAAAAATAATTCAGCACGCTA 57.212 34.783 0.00 0.00 0.00 4.26
685 3516 3.189287 CGCTACAAATTGTCTCTTGCCTT 59.811 43.478 0.22 0.00 0.00 4.35
686 3517 4.320494 CGCTACAAATTGTCTCTTGCCTTT 60.320 41.667 0.22 0.00 0.00 3.11
687 3518 5.532557 GCTACAAATTGTCTCTTGCCTTTT 58.467 37.500 0.22 0.00 0.00 2.27
688 3519 5.985530 GCTACAAATTGTCTCTTGCCTTTTT 59.014 36.000 0.22 0.00 0.00 1.94
748 3593 2.073056 GAGACACACACACACACACAA 58.927 47.619 0.00 0.00 0.00 3.33
772 3617 3.927758 TGTTGATAACGAACGGTATGTGG 59.072 43.478 9.49 0.00 0.00 4.17
774 3619 3.772932 TGATAACGAACGGTATGTGGAC 58.227 45.455 9.49 0.00 0.00 4.02
775 3620 3.193056 TGATAACGAACGGTATGTGGACA 59.807 43.478 9.49 0.00 0.00 4.02
870 3715 3.136763 CTCTTGCAGTCAGACAACACAT 58.863 45.455 2.66 0.00 0.00 3.21
878 3723 2.173382 GACAACACATGCCGCGTC 59.827 61.111 4.92 0.00 0.00 5.19
894 3740 1.404035 GCGTCAAAAGACAACCCAGTT 59.596 47.619 0.00 0.00 0.00 3.16
904 3750 3.071167 AGACAACCCAGTTAGACAAGACC 59.929 47.826 0.00 0.00 0.00 3.85
905 3751 3.046374 ACAACCCAGTTAGACAAGACCT 58.954 45.455 0.00 0.00 0.00 3.85
906 3752 3.181454 ACAACCCAGTTAGACAAGACCTG 60.181 47.826 0.00 0.00 0.00 4.00
908 3754 3.314693 ACCCAGTTAGACAAGACCTGAA 58.685 45.455 0.00 0.00 0.00 3.02
912 3759 5.123227 CCAGTTAGACAAGACCTGAAACAA 58.877 41.667 0.00 0.00 0.00 2.83
916 3763 3.963129 AGACAAGACCTGAAACAAACCA 58.037 40.909 0.00 0.00 0.00 3.67
931 3789 6.759497 AACAAACCAACTATAGGATTCTGC 57.241 37.500 4.43 0.00 0.00 4.26
932 3790 6.067217 ACAAACCAACTATAGGATTCTGCT 57.933 37.500 4.43 0.00 0.00 4.24
968 3830 3.000727 CCTAGCTCAAACTACAAACCGG 58.999 50.000 0.00 0.00 0.00 5.28
974 3836 3.395639 TCAAACTACAAACCGGTAGCAG 58.604 45.455 8.00 6.59 43.61 4.24
1068 3945 1.631072 CGGCATACTGAAACTCGCG 59.369 57.895 0.00 0.00 0.00 5.87
1461 4339 3.343788 CTGCCGGTCTCCAGTCGAC 62.344 68.421 7.70 7.70 0.00 4.20
1473 4351 4.353437 GTCGACGCCTCCACCGTT 62.353 66.667 0.00 0.00 39.30 4.44
1524 4403 2.685388 GCAATCTGTTTAGGGCTTCCTC 59.315 50.000 0.00 0.00 41.96 3.71
1533 4412 4.938575 TTAGGGCTTCCTCCATTTACAA 57.061 40.909 0.00 0.00 41.96 2.41
1547 4427 9.359653 CCTCCATTTACAAGAATTTCATAGGAT 57.640 33.333 0.00 0.00 0.00 3.24
1583 4466 8.884124 TTAGATTGGATTGTTCAGAATTTCCT 57.116 30.769 9.28 0.00 0.00 3.36
1673 4558 5.450592 TTTTCACAATAGCTGCATGTCAA 57.549 34.783 1.02 0.00 0.00 3.18
1676 4561 4.520179 TCACAATAGCTGCATGTCAATCT 58.480 39.130 1.02 0.00 0.00 2.40
1677 4562 4.573607 TCACAATAGCTGCATGTCAATCTC 59.426 41.667 1.02 0.00 0.00 2.75
1681 4566 1.022735 GCTGCATGTCAATCTCCTGG 58.977 55.000 0.00 0.00 0.00 4.45
1693 4578 6.183360 TGTCAATCTCCTGGCTTTTGAATTTT 60.183 34.615 6.60 0.00 0.00 1.82
1695 4580 6.041865 TCAATCTCCTGGCTTTTGAATTTTGA 59.958 34.615 0.00 0.00 0.00 2.69
1696 4581 5.200368 TCTCCTGGCTTTTGAATTTTGAC 57.800 39.130 0.00 0.00 0.00 3.18
1713 4598 6.627690 TTTTGACTAGTCGATTTTCGCTAG 57.372 37.500 17.85 18.20 44.36 3.42
1717 4602 4.922719 ACTAGTCGATTTTCGCTAGAAGG 58.077 43.478 22.79 8.38 43.00 3.46
1729 4614 2.356382 CGCTAGAAGGGAGATATAGCCG 59.644 54.545 0.00 0.00 36.37 5.52
1733 4618 2.650322 AGAAGGGAGATATAGCCGGAGA 59.350 50.000 5.05 0.00 0.00 3.71
1749 4634 0.744281 GAGAGGAGGAAGAAGCTCGG 59.256 60.000 0.00 0.00 0.00 4.63
1750 4635 1.142965 GAGGAGGAAGAAGCTCGGC 59.857 63.158 0.00 0.00 0.00 5.54
2167 5052 1.485066 AGAATAAACCGGTCATCGCCT 59.515 47.619 8.04 0.00 37.59 5.52
2169 5054 0.179056 ATAAACCGGTCATCGCCTGG 60.179 55.000 8.04 0.00 37.59 4.45
2170 5055 2.246761 TAAACCGGTCATCGCCTGGG 62.247 60.000 8.04 0.00 37.59 4.45
2211 5096 2.750237 GGTGCTGGGGCGGTTTAG 60.750 66.667 0.00 0.00 42.25 1.85
2212 5097 2.750237 GTGCTGGGGCGGTTTAGG 60.750 66.667 0.00 0.00 42.25 2.69
2238 5123 4.135153 CGAGGTGGTCGCAGGAGG 62.135 72.222 0.00 0.00 43.03 4.30
2239 5124 4.459089 GAGGTGGTCGCAGGAGGC 62.459 72.222 0.00 0.00 39.90 4.70
2261 5146 2.853235 GGGAGTCCCTCTTTTCGAAA 57.147 50.000 22.04 6.47 41.34 3.46
2262 5147 3.136009 GGGAGTCCCTCTTTTCGAAAA 57.864 47.619 22.04 21.35 41.34 2.29
2263 5148 3.483421 GGGAGTCCCTCTTTTCGAAAAA 58.517 45.455 22.04 13.22 41.34 1.94
2280 5165 3.207547 AAAAAGAAGCACCGCGGGC 62.208 57.895 31.76 28.06 0.00 6.13
2319 5204 0.948678 CGGCGGTTTGAAGGAAGAAA 59.051 50.000 0.00 0.00 0.00 2.52
2329 5214 1.889170 GAAGGAAGAAAAGGGTGGCTG 59.111 52.381 0.00 0.00 0.00 4.85
2332 5217 1.272704 GGAAGAAAAGGGTGGCTGGAT 60.273 52.381 0.00 0.00 0.00 3.41
2340 5225 0.038166 GGGTGGCTGGATGTTGAAGA 59.962 55.000 0.00 0.00 0.00 2.87
2342 5227 1.545428 GGTGGCTGGATGTTGAAGACA 60.545 52.381 0.00 0.00 43.71 3.41
2351 5236 2.900716 TGTTGAAGACACACATCCGA 57.099 45.000 0.00 0.00 32.00 4.55
2353 5238 2.102420 TGTTGAAGACACACATCCGACT 59.898 45.455 0.00 0.00 32.00 4.18
2356 5241 2.102420 TGAAGACACACATCCGACTGTT 59.898 45.455 0.00 0.00 0.00 3.16
2364 5249 2.031157 CACATCCGACTGTTGGTTTTCC 60.031 50.000 13.71 0.00 41.14 3.13
2365 5250 2.158667 ACATCCGACTGTTGGTTTTCCT 60.159 45.455 13.71 0.00 41.38 3.36
2366 5251 2.721425 TCCGACTGTTGGTTTTCCTT 57.279 45.000 13.71 0.00 41.38 3.36
2367 5252 2.567985 TCCGACTGTTGGTTTTCCTTC 58.432 47.619 13.71 0.00 41.38 3.46
2368 5253 1.263217 CCGACTGTTGGTTTTCCTTCG 59.737 52.381 5.87 0.00 41.38 3.79
2369 5254 1.263217 CGACTGTTGGTTTTCCTTCGG 59.737 52.381 0.00 0.00 41.38 4.30
2370 5255 2.567985 GACTGTTGGTTTTCCTTCGGA 58.432 47.619 0.00 0.00 41.38 4.55
2371 5256 2.289820 GACTGTTGGTTTTCCTTCGGAC 59.710 50.000 0.00 0.00 41.38 4.79
2372 5257 1.263217 CTGTTGGTTTTCCTTCGGACG 59.737 52.381 0.00 0.00 41.38 4.79
2373 5258 0.589708 GTTGGTTTTCCTTCGGACGG 59.410 55.000 0.00 0.00 41.38 4.79
2376 5261 0.589708 GGTTTTCCTTCGGACGGTTG 59.410 55.000 0.00 0.00 36.94 3.77
2400 5285 2.302733 ACCAGCCAATGACCCAAATTTC 59.697 45.455 0.00 0.00 0.00 2.17
2413 5298 7.507829 TGACCCAAATTTCAAATTCAGTTGAT 58.492 30.769 0.00 0.00 37.36 2.57
2459 5344 8.225603 TCACATCAAATAAAATCTCTTAGGCC 57.774 34.615 0.00 0.00 0.00 5.19
2460 5345 7.012327 TCACATCAAATAAAATCTCTTAGGCCG 59.988 37.037 0.00 0.00 0.00 6.13
2461 5346 5.751243 TCAAATAAAATCTCTTAGGCCGC 57.249 39.130 0.00 0.00 0.00 6.53
2462 5347 4.578928 TCAAATAAAATCTCTTAGGCCGCC 59.421 41.667 0.00 0.00 0.00 6.13
2463 5348 2.632987 TAAAATCTCTTAGGCCGCCC 57.367 50.000 5.55 0.00 0.00 6.13
2464 5349 0.919710 AAAATCTCTTAGGCCGCCCT 59.080 50.000 5.55 0.00 45.61 5.19
2465 5350 0.919710 AAATCTCTTAGGCCGCCCTT 59.080 50.000 5.55 0.00 42.87 3.95
2466 5351 0.181350 AATCTCTTAGGCCGCCCTTG 59.819 55.000 5.55 0.00 42.87 3.61
2467 5352 0.691078 ATCTCTTAGGCCGCCCTTGA 60.691 55.000 5.55 0.63 42.87 3.02
2468 5353 1.153349 CTCTTAGGCCGCCCTTGAC 60.153 63.158 5.55 0.00 42.87 3.18
2469 5354 1.899437 CTCTTAGGCCGCCCTTGACA 61.899 60.000 5.55 0.00 42.87 3.58
2470 5355 1.224592 CTTAGGCCGCCCTTGACAT 59.775 57.895 5.55 0.00 42.87 3.06
2471 5356 0.815615 CTTAGGCCGCCCTTGACATC 60.816 60.000 5.55 0.00 42.87 3.06
2472 5357 2.587322 TTAGGCCGCCCTTGACATCG 62.587 60.000 5.55 0.00 42.87 3.84
2474 5359 4.778143 GCCGCCCTTGACATCGGT 62.778 66.667 0.00 0.00 43.45 4.69
2475 5360 2.819595 CCGCCCTTGACATCGGTG 60.820 66.667 0.00 0.00 37.33 4.94
2476 5361 2.047274 CGCCCTTGACATCGGTGT 60.047 61.111 0.00 0.00 42.49 4.16
2477 5362 1.216977 CGCCCTTGACATCGGTGTA 59.783 57.895 0.00 0.00 39.09 2.90
2478 5363 0.179084 CGCCCTTGACATCGGTGTAT 60.179 55.000 0.00 0.00 39.09 2.29
2479 5364 1.067974 CGCCCTTGACATCGGTGTATA 59.932 52.381 0.00 0.00 39.09 1.47
2480 5365 2.480845 GCCCTTGACATCGGTGTATAC 58.519 52.381 0.00 0.00 39.09 1.47
2481 5366 2.159014 GCCCTTGACATCGGTGTATACA 60.159 50.000 0.00 0.08 39.09 2.29
2482 5367 3.680475 GCCCTTGACATCGGTGTATACAA 60.680 47.826 7.25 0.72 39.09 2.41
2483 5368 4.509616 CCCTTGACATCGGTGTATACAAA 58.490 43.478 7.25 0.00 39.09 2.83
2484 5369 4.938832 CCCTTGACATCGGTGTATACAAAA 59.061 41.667 7.25 0.00 39.09 2.44
2485 5370 5.588648 CCCTTGACATCGGTGTATACAAAAT 59.411 40.000 7.25 0.00 39.09 1.82
2486 5371 6.764085 CCCTTGACATCGGTGTATACAAAATA 59.236 38.462 7.25 0.00 39.09 1.40
2487 5372 7.254658 CCCTTGACATCGGTGTATACAAAATAC 60.255 40.741 7.25 0.00 39.09 1.89
2488 5373 7.279090 CCTTGACATCGGTGTATACAAAATACA 59.721 37.037 7.25 0.37 39.09 2.29
2489 5374 8.549338 TTGACATCGGTGTATACAAAATACAA 57.451 30.769 7.25 6.19 39.09 2.41
2490 5375 7.966111 TGACATCGGTGTATACAAAATACAAC 58.034 34.615 7.25 3.60 39.09 3.32
2491 5376 7.064847 TGACATCGGTGTATACAAAATACAACC 59.935 37.037 7.25 0.98 38.59 3.77
2492 5377 6.036300 ACATCGGTGTATACAAAATACAACCG 59.964 38.462 16.83 16.83 42.90 4.44
2493 5378 5.477510 TCGGTGTATACAAAATACAACCGT 58.522 37.500 20.20 0.00 42.58 4.83
2494 5379 6.625362 TCGGTGTATACAAAATACAACCGTA 58.375 36.000 20.20 9.64 42.58 4.02
2495 5380 6.529829 TCGGTGTATACAAAATACAACCGTAC 59.470 38.462 20.20 0.97 42.58 3.67
2496 5381 6.531240 CGGTGTATACAAAATACAACCGTACT 59.469 38.462 7.25 0.00 38.59 2.73
2497 5382 7.063308 CGGTGTATACAAAATACAACCGTACTT 59.937 37.037 7.25 0.00 38.59 2.24
2498 5383 8.720562 GGTGTATACAAAATACAACCGTACTTT 58.279 33.333 7.25 0.00 36.48 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 0.689623 AAGCTTCAGGTCAGGGTCAG 59.310 55.000 0.00 0.00 0.00 3.51
129 130 1.140312 AAAGCTTCAGGTCAGGGTCA 58.860 50.000 0.00 0.00 0.00 4.02
130 131 1.528129 CAAAGCTTCAGGTCAGGGTC 58.472 55.000 0.00 0.00 0.00 4.46
131 132 0.538287 GCAAAGCTTCAGGTCAGGGT 60.538 55.000 0.00 0.00 0.00 4.34
132 133 0.251077 AGCAAAGCTTCAGGTCAGGG 60.251 55.000 0.00 0.00 33.89 4.45
133 134 1.268899 CAAGCAAAGCTTCAGGTCAGG 59.731 52.381 0.00 0.00 46.77 3.86
134 135 2.031333 GTCAAGCAAAGCTTCAGGTCAG 60.031 50.000 0.00 0.00 46.77 3.51
135 136 1.949525 GTCAAGCAAAGCTTCAGGTCA 59.050 47.619 0.00 0.00 46.77 4.02
136 137 1.268079 GGTCAAGCAAAGCTTCAGGTC 59.732 52.381 0.00 0.00 46.77 3.85
137 138 1.133668 AGGTCAAGCAAAGCTTCAGGT 60.134 47.619 0.00 0.00 46.77 4.00
138 139 1.268899 CAGGTCAAGCAAAGCTTCAGG 59.731 52.381 0.00 0.00 46.77 3.86
139 140 1.952296 ACAGGTCAAGCAAAGCTTCAG 59.048 47.619 0.00 0.00 46.77 3.02
143 144 2.102578 ACAAACAGGTCAAGCAAAGCT 58.897 42.857 0.00 0.00 42.56 3.74
155 156 4.942852 TGCAACTTTTATCCACAAACAGG 58.057 39.130 0.00 0.00 0.00 4.00
186 188 1.068333 CATCCCAAGGAAAGCAACACG 60.068 52.381 0.00 0.00 34.34 4.49
243 245 0.697079 TCTCCCTACGAGTCCACAGT 59.303 55.000 0.00 0.00 39.84 3.55
248 250 4.950479 TCGTCTCCCTACGAGTCC 57.050 61.111 0.00 0.00 46.29 3.85
253 255 3.991773 TGTTTCAAAATCGTCTCCCTACG 59.008 43.478 0.00 0.00 44.19 3.51
254 256 5.934935 TTGTTTCAAAATCGTCTCCCTAC 57.065 39.130 0.00 0.00 0.00 3.18
255 257 6.712998 TGATTTGTTTCAAAATCGTCTCCCTA 59.287 34.615 5.47 0.00 45.55 3.53
256 258 5.534654 TGATTTGTTTCAAAATCGTCTCCCT 59.465 36.000 5.47 0.00 45.55 4.20
258 287 7.873739 ATTGATTTGTTTCAAAATCGTCTCC 57.126 32.000 5.47 0.00 45.55 3.71
275 304 9.705290 GAACACCCTAAACAAATGTATTGATTT 57.295 29.630 0.00 0.00 0.00 2.17
318 347 9.129209 GGAATAGACTGCAACAAAAATTAACTC 57.871 33.333 0.00 0.00 0.00 3.01
364 1394 7.092716 TCCGTATACAGAGTAAAAAGGACAAC 58.907 38.462 3.32 0.00 0.00 3.32
369 1399 8.712285 TTCAATCCGTATACAGAGTAAAAAGG 57.288 34.615 3.32 0.00 0.00 3.11
398 3224 1.679153 GAATGGAGAGAGGAGTCCGTC 59.321 57.143 2.76 4.97 35.37 4.79
401 3227 2.316108 GGAGAATGGAGAGAGGAGTCC 58.684 57.143 0.00 0.00 0.00 3.85
405 3231 4.609866 TTAGTGGAGAATGGAGAGAGGA 57.390 45.455 0.00 0.00 0.00 3.71
413 3239 4.944317 GGGAGAAAGTTTAGTGGAGAATGG 59.056 45.833 0.00 0.00 0.00 3.16
415 3241 4.852697 AGGGGAGAAAGTTTAGTGGAGAAT 59.147 41.667 0.00 0.00 0.00 2.40
416 3242 4.240323 AGGGGAGAAAGTTTAGTGGAGAA 58.760 43.478 0.00 0.00 0.00 2.87
422 3248 6.971932 AGGAAATAGGGGAGAAAGTTTAGT 57.028 37.500 0.00 0.00 0.00 2.24
427 3253 4.164413 GCAGTAGGAAATAGGGGAGAAAGT 59.836 45.833 0.00 0.00 0.00 2.66
439 3265 1.682087 GGAAAGCCCGCAGTAGGAAAT 60.682 52.381 0.00 0.00 0.00 2.17
444 3271 1.153349 GGAGGAAAGCCCGCAGTAG 60.153 63.158 0.00 0.00 40.87 2.57
453 3280 2.238084 AAAATCAGGGGGAGGAAAGC 57.762 50.000 0.00 0.00 0.00 3.51
456 3284 3.913370 TTGAAAAATCAGGGGGAGGAA 57.087 42.857 0.00 0.00 0.00 3.36
462 3290 5.329035 ACATTCGATTGAAAAATCAGGGG 57.671 39.130 13.92 0.00 37.71 4.79
475 3303 9.722056 GCATTAAGAAACTATCAACATTCGATT 57.278 29.630 0.00 0.00 0.00 3.34
476 3304 9.113838 AGCATTAAGAAACTATCAACATTCGAT 57.886 29.630 0.00 0.00 0.00 3.59
477 3305 8.492673 AGCATTAAGAAACTATCAACATTCGA 57.507 30.769 0.00 0.00 0.00 3.71
487 3315 9.046296 CGGTCAGATTTAGCATTAAGAAACTAT 57.954 33.333 0.00 0.00 0.00 2.12
489 3317 6.879458 ACGGTCAGATTTAGCATTAAGAAACT 59.121 34.615 0.00 0.00 0.00 2.66
491 3319 7.681939 AACGGTCAGATTTAGCATTAAGAAA 57.318 32.000 0.00 0.00 0.00 2.52
492 3320 7.606456 AGAAACGGTCAGATTTAGCATTAAGAA 59.394 33.333 0.00 0.00 0.00 2.52
493 3321 7.103641 AGAAACGGTCAGATTTAGCATTAAGA 58.896 34.615 0.00 0.00 0.00 2.10
494 3322 7.308782 AGAAACGGTCAGATTTAGCATTAAG 57.691 36.000 0.00 0.00 0.00 1.85
496 3324 7.526608 CAAAGAAACGGTCAGATTTAGCATTA 58.473 34.615 0.00 0.00 0.00 1.90
497 3325 6.381801 CAAAGAAACGGTCAGATTTAGCATT 58.618 36.000 0.00 0.00 0.00 3.56
534 3364 3.596101 AGATGGCCAGGATCTCTAATGT 58.404 45.455 13.05 0.00 0.00 2.71
538 3368 5.406163 TCAATTAGATGGCCAGGATCTCTA 58.594 41.667 13.05 10.42 32.32 2.43
549 3379 5.266733 TCCATTGCTTTCAATTAGATGGC 57.733 39.130 0.00 0.00 40.74 4.40
573 3404 4.597004 AGACCATGCAGTTGATCAATCTT 58.403 39.130 12.12 0.00 0.00 2.40
579 3410 8.839310 AAGTATATAAGACCATGCAGTTGATC 57.161 34.615 0.00 0.00 0.00 2.92
598 3429 7.962441 TCTGCAGTTGCTATTATGGAAGTATA 58.038 34.615 14.67 0.00 42.66 1.47
599 3430 6.830912 TCTGCAGTTGCTATTATGGAAGTAT 58.169 36.000 14.67 0.00 42.66 2.12
601 3432 5.102953 TCTGCAGTTGCTATTATGGAAGT 57.897 39.130 14.67 0.00 42.66 3.01
602 3433 5.363101 TCTCTGCAGTTGCTATTATGGAAG 58.637 41.667 14.67 0.00 42.66 3.46
603 3434 5.357742 TCTCTGCAGTTGCTATTATGGAA 57.642 39.130 14.67 0.00 42.66 3.53
604 3435 5.557576 ATCTCTGCAGTTGCTATTATGGA 57.442 39.130 14.67 0.00 42.66 3.41
605 3436 5.996513 AGAATCTCTGCAGTTGCTATTATGG 59.003 40.000 14.67 0.00 42.66 2.74
688 3519 9.260002 GGCAAGAGACAATTTATTTCTCAAAAA 57.740 29.630 12.70 0.00 38.63 1.94
689 3520 8.641541 AGGCAAGAGACAATTTATTTCTCAAAA 58.358 29.630 12.70 0.00 38.63 2.44
690 3521 8.084073 CAGGCAAGAGACAATTTATTTCTCAAA 58.916 33.333 12.70 0.00 38.63 2.69
691 3522 7.448161 TCAGGCAAGAGACAATTTATTTCTCAA 59.552 33.333 12.70 0.00 38.63 3.02
692 3523 6.942005 TCAGGCAAGAGACAATTTATTTCTCA 59.058 34.615 12.70 0.00 38.63 3.27
693 3524 7.247019 GTCAGGCAAGAGACAATTTATTTCTC 58.753 38.462 0.00 0.00 36.76 2.87
694 3525 6.151817 GGTCAGGCAAGAGACAATTTATTTCT 59.848 38.462 0.00 0.00 36.50 2.52
695 3526 6.071952 TGGTCAGGCAAGAGACAATTTATTTC 60.072 38.462 0.00 0.00 36.50 2.17
696 3527 5.774690 TGGTCAGGCAAGAGACAATTTATTT 59.225 36.000 0.00 0.00 36.50 1.40
697 3528 5.183904 GTGGTCAGGCAAGAGACAATTTATT 59.816 40.000 0.00 0.00 36.50 1.40
698 3529 4.702131 GTGGTCAGGCAAGAGACAATTTAT 59.298 41.667 0.00 0.00 36.50 1.40
699 3530 4.072131 GTGGTCAGGCAAGAGACAATTTA 58.928 43.478 0.00 0.00 36.50 1.40
700 3531 2.887152 GTGGTCAGGCAAGAGACAATTT 59.113 45.455 0.00 0.00 36.50 1.82
701 3532 2.508526 GTGGTCAGGCAAGAGACAATT 58.491 47.619 0.00 0.00 36.50 2.32
702 3533 1.271597 GGTGGTCAGGCAAGAGACAAT 60.272 52.381 0.00 0.00 36.50 2.71
703 3534 0.108585 GGTGGTCAGGCAAGAGACAA 59.891 55.000 0.00 0.00 36.50 3.18
704 3535 1.053835 TGGTGGTCAGGCAAGAGACA 61.054 55.000 0.00 0.00 36.50 3.41
705 3536 0.321122 CTGGTGGTCAGGCAAGAGAC 60.321 60.000 0.00 0.00 39.76 3.36
706 3537 2.061220 CTGGTGGTCAGGCAAGAGA 58.939 57.895 0.00 0.00 39.76 3.10
707 3538 4.709840 CTGGTGGTCAGGCAAGAG 57.290 61.111 0.00 0.00 39.76 2.85
730 3561 1.804151 ACTTGTGTGTGTGTGTGTGTC 59.196 47.619 0.00 0.00 0.00 3.67
748 3593 4.624024 CACATACCGTTCGTTATCAACACT 59.376 41.667 0.00 0.00 0.00 3.55
772 3617 3.998341 TCAGGCAAAATTACCGTAGTGTC 59.002 43.478 0.00 0.00 0.00 3.67
774 3619 4.035208 GGATCAGGCAAAATTACCGTAGTG 59.965 45.833 0.00 0.00 0.00 2.74
775 3620 4.196971 GGATCAGGCAAAATTACCGTAGT 58.803 43.478 0.00 0.00 0.00 2.73
845 3690 0.038801 TGTCTGACTGCAAGAGCTCG 60.039 55.000 8.37 0.00 42.74 5.03
878 3723 5.588648 TCTTGTCTAACTGGGTTGTCTTTTG 59.411 40.000 0.00 0.00 0.00 2.44
894 3740 5.105567 TGGTTTGTTTCAGGTCTTGTCTA 57.894 39.130 0.00 0.00 0.00 2.59
904 3750 8.454106 CAGAATCCTATAGTTGGTTTGTTTCAG 58.546 37.037 0.00 0.00 0.00 3.02
905 3751 7.094377 GCAGAATCCTATAGTTGGTTTGTTTCA 60.094 37.037 0.00 0.00 0.00 2.69
906 3752 7.121315 AGCAGAATCCTATAGTTGGTTTGTTTC 59.879 37.037 0.00 0.00 0.00 2.78
908 3754 6.485171 AGCAGAATCCTATAGTTGGTTTGTT 58.515 36.000 0.00 0.00 0.00 2.83
912 3759 6.143915 TCCTAGCAGAATCCTATAGTTGGTT 58.856 40.000 0.00 0.00 0.00 3.67
916 3763 6.353404 GCTTCCTAGCAGAATCCTATAGTT 57.647 41.667 0.00 0.00 46.95 2.24
931 3789 2.829120 GCTAGGTCTATGGGCTTCCTAG 59.171 54.545 10.94 10.94 45.97 3.02
932 3790 2.451273 AGCTAGGTCTATGGGCTTCCTA 59.549 50.000 0.00 0.00 0.00 2.94
968 3830 2.511600 AATCACGCCGGCTGCTAC 60.512 61.111 26.68 0.00 38.05 3.58
1042 3919 0.108377 TTCAGTATGCCGCACGTCAT 60.108 50.000 0.00 0.00 34.76 3.06
1389 4267 1.024046 CGATGCACCGGTCATGGAAA 61.024 55.000 19.88 0.00 0.00 3.13
1473 4351 2.029964 GCAACTTCCACGTCCGGA 59.970 61.111 0.00 0.00 0.00 5.14
1560 4443 6.723052 ACAGGAAATTCTGAACAATCCAATCT 59.277 34.615 15.92 0.00 38.11 2.40
1573 4456 5.639506 AGTGATGAACGTACAGGAAATTCTG 59.360 40.000 0.00 0.00 40.40 3.02
1583 4466 6.756542 CCAATCTTATGAGTGATGAACGTACA 59.243 38.462 7.56 0.00 40.33 2.90
1627 4512 7.902920 AAATAGAGTGCAATTGGGTCATAAT 57.097 32.000 7.72 0.00 0.00 1.28
1665 4550 1.760192 AAGCCAGGAGATTGACATGC 58.240 50.000 0.00 0.00 0.00 4.06
1673 4558 5.541484 AGTCAAAATTCAAAAGCCAGGAGAT 59.459 36.000 0.00 0.00 0.00 2.75
1676 4561 5.833131 ACTAGTCAAAATTCAAAAGCCAGGA 59.167 36.000 0.00 0.00 0.00 3.86
1677 4562 6.089249 ACTAGTCAAAATTCAAAAGCCAGG 57.911 37.500 0.00 0.00 0.00 4.45
1681 4566 8.507470 AAATCGACTAGTCAAAATTCAAAAGC 57.493 30.769 22.37 0.00 0.00 3.51
1693 4578 5.448768 CCTTCTAGCGAAAATCGACTAGTCA 60.449 44.000 22.37 10.16 43.74 3.41
1695 4580 4.202030 CCCTTCTAGCGAAAATCGACTAGT 60.202 45.833 20.12 0.00 43.74 2.57
1696 4581 4.036498 TCCCTTCTAGCGAAAATCGACTAG 59.964 45.833 17.34 17.34 43.74 2.57
1708 4593 2.356382 CGGCTATATCTCCCTTCTAGCG 59.644 54.545 0.00 0.00 36.51 4.26
1713 4598 3.020984 CTCTCCGGCTATATCTCCCTTC 58.979 54.545 0.00 0.00 0.00 3.46
1717 4602 2.650322 CTCCTCTCCGGCTATATCTCC 58.350 57.143 0.00 0.00 0.00 3.71
1729 4614 0.744281 CGAGCTTCTTCCTCCTCTCC 59.256 60.000 0.00 0.00 0.00 3.71
1733 4618 2.716017 CGCCGAGCTTCTTCCTCCT 61.716 63.158 0.00 0.00 0.00 3.69
2143 5028 3.737047 GCGATGACCGGTTTATTCTCTGA 60.737 47.826 9.42 0.00 39.04 3.27
2145 5030 2.483188 GGCGATGACCGGTTTATTCTCT 60.483 50.000 9.42 0.00 39.04 3.10
2167 5052 3.096495 GCCATCCCTGTAGCCCCA 61.096 66.667 0.00 0.00 0.00 4.96
2169 5054 4.256180 CCGCCATCCCTGTAGCCC 62.256 72.222 0.00 0.00 0.00 5.19
2170 5055 4.937431 GCCGCCATCCCTGTAGCC 62.937 72.222 0.00 0.00 0.00 3.93
2171 5056 3.697439 TTGCCGCCATCCCTGTAGC 62.697 63.158 0.00 0.00 0.00 3.58
2172 5057 1.524621 CTTGCCGCCATCCCTGTAG 60.525 63.158 0.00 0.00 0.00 2.74
2173 5058 1.992834 TCTTGCCGCCATCCCTGTA 60.993 57.895 0.00 0.00 0.00 2.74
2174 5059 3.329889 TCTTGCCGCCATCCCTGT 61.330 61.111 0.00 0.00 0.00 4.00
2175 5060 2.825836 GTCTTGCCGCCATCCCTG 60.826 66.667 0.00 0.00 0.00 4.45
2176 5061 4.115199 GGTCTTGCCGCCATCCCT 62.115 66.667 0.00 0.00 0.00 4.20
2194 5079 2.750237 CTAAACCGCCCCAGCACC 60.750 66.667 0.00 0.00 39.83 5.01
2195 5080 2.750237 CCTAAACCGCCCCAGCAC 60.750 66.667 0.00 0.00 39.83 4.40
2196 5081 4.041762 CCCTAAACCGCCCCAGCA 62.042 66.667 0.00 0.00 39.83 4.41
2197 5082 3.699134 CTCCCTAAACCGCCCCAGC 62.699 68.421 0.00 0.00 0.00 4.85
2198 5083 2.590092 CTCCCTAAACCGCCCCAG 59.410 66.667 0.00 0.00 0.00 4.45
2199 5084 3.012722 CCTCCCTAAACCGCCCCA 61.013 66.667 0.00 0.00 0.00 4.96
2262 5147 3.039134 CCCGCGGTGCTTCTTTTT 58.961 55.556 26.12 0.00 0.00 1.94
2263 5148 3.670377 GCCCGCGGTGCTTCTTTT 61.670 61.111 26.12 0.00 0.00 2.27
2319 5204 0.482446 TTCAACATCCAGCCACCCTT 59.518 50.000 0.00 0.00 0.00 3.95
2332 5217 2.102420 AGTCGGATGTGTGTCTTCAACA 59.898 45.455 0.00 0.00 34.78 3.33
2340 5225 0.468226 ACCAACAGTCGGATGTGTGT 59.532 50.000 0.00 0.00 32.52 3.72
2342 5227 2.341846 AAACCAACAGTCGGATGTGT 57.658 45.000 0.00 0.00 32.52 3.72
2373 5258 1.000843 GGGTCATTGGCTGGTTTCAAC 59.999 52.381 0.00 0.00 0.00 3.18
2376 5261 1.337118 TTGGGTCATTGGCTGGTTTC 58.663 50.000 0.00 0.00 0.00 2.78
2384 5269 6.711645 ACTGAATTTGAAATTTGGGTCATTGG 59.288 34.615 4.46 0.00 0.00 3.16
2385 5270 7.733402 ACTGAATTTGAAATTTGGGTCATTG 57.267 32.000 4.46 0.00 0.00 2.82
2433 5318 8.854117 GGCCTAAGAGATTTTATTTGATGTGAT 58.146 33.333 0.00 0.00 0.00 3.06
2436 5321 6.238759 GCGGCCTAAGAGATTTTATTTGATGT 60.239 38.462 0.00 0.00 0.00 3.06
2442 5327 3.138468 AGGGCGGCCTAAGAGATTTTATT 59.862 43.478 31.90 0.00 0.00 1.40
2450 5335 1.153349 GTCAAGGGCGGCCTAAGAG 60.153 63.158 33.03 20.59 0.00 2.85
2451 5336 1.271840 ATGTCAAGGGCGGCCTAAGA 61.272 55.000 33.03 27.58 0.00 2.10
2452 5337 0.815615 GATGTCAAGGGCGGCCTAAG 60.816 60.000 33.03 25.73 0.00 2.18
2453 5338 1.223487 GATGTCAAGGGCGGCCTAA 59.777 57.895 33.03 19.92 0.00 2.69
2454 5339 2.908015 GATGTCAAGGGCGGCCTA 59.092 61.111 33.03 16.67 0.00 3.93
2455 5340 4.473520 CGATGTCAAGGGCGGCCT 62.474 66.667 27.45 27.45 0.00 5.19
2459 5344 0.179084 ATACACCGATGTCAAGGGCG 60.179 55.000 0.00 0.00 40.48 6.13
2460 5345 2.159014 TGTATACACCGATGTCAAGGGC 60.159 50.000 0.08 0.00 40.48 5.19
2461 5346 3.812156 TGTATACACCGATGTCAAGGG 57.188 47.619 0.08 0.00 40.48 3.95
2462 5347 6.677781 ATTTTGTATACACCGATGTCAAGG 57.322 37.500 4.68 0.00 40.48 3.61
2463 5348 8.192068 TGTATTTTGTATACACCGATGTCAAG 57.808 34.615 4.68 0.00 40.48 3.02
2464 5349 8.444715 GTTGTATTTTGTATACACCGATGTCAA 58.555 33.333 4.68 7.52 40.48 3.18
2465 5350 7.064847 GGTTGTATTTTGTATACACCGATGTCA 59.935 37.037 4.68 2.60 40.48 3.58
2466 5351 7.404203 GGTTGTATTTTGTATACACCGATGTC 58.596 38.462 4.68 0.38 40.48 3.06
2467 5352 6.036300 CGGTTGTATTTTGTATACACCGATGT 59.964 38.462 17.65 0.00 43.46 3.06
2468 5353 6.036300 ACGGTTGTATTTTGTATACACCGATG 59.964 38.462 25.21 5.82 43.46 3.84
2469 5354 6.108015 ACGGTTGTATTTTGTATACACCGAT 58.892 36.000 25.21 14.03 43.46 4.18
2470 5355 5.477510 ACGGTTGTATTTTGTATACACCGA 58.522 37.500 25.21 8.77 43.46 4.69
2471 5356 5.783100 ACGGTTGTATTTTGTATACACCG 57.217 39.130 19.76 19.76 44.64 4.94
2472 5357 7.832503 AGTACGGTTGTATTTTGTATACACC 57.167 36.000 4.68 0.00 34.59 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.