Multiple sequence alignment - TraesCS7A01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G346800 chr7A 100.000 2459 0 0 1 2459 509652251 509649793 0.000000e+00 4542
1 TraesCS7A01G346800 chr7A 89.236 288 29 2 1177 1463 509526601 509526315 2.330000e-95 359
2 TraesCS7A01G346800 chr7A 89.706 272 28 0 1187 1458 509814783 509814512 5.030000e-92 348
3 TraesCS7A01G346800 chr7A 86.897 290 35 2 1177 1463 509467642 509467353 3.050000e-84 322
4 TraesCS7A01G346800 chr7A 95.413 109 4 1 110 217 730748170 730748278 3.250000e-39 172
5 TraesCS7A01G346800 chr7A 94.595 111 5 1 108 217 269960317 269960427 1.170000e-38 171
6 TraesCS7A01G346800 chr7D 87.199 1867 153 48 269 2069 423550694 423552540 0.000000e+00 2045
7 TraesCS7A01G346800 chr7D 89.199 287 31 0 1174 1460 423711205 423711491 2.330000e-95 359
8 TraesCS7A01G346800 chr7D 89.781 274 28 0 1187 1460 423344588 423344861 3.890000e-93 351
9 TraesCS7A01G346800 chr7D 88.112 286 34 0 1173 1458 423412480 423412765 8.420000e-90 340
10 TraesCS7A01G346800 chr7D 87.931 290 33 2 1174 1462 423642187 423642475 8.420000e-90 340
11 TraesCS7A01G346800 chr7B 83.482 2125 219 51 237 2253 440331404 440333504 0.000000e+00 1858
12 TraesCS7A01G346800 chr5D 94.737 114 5 1 111 223 491692748 491692861 2.510000e-40 176
13 TraesCS7A01G346800 chr4A 94.690 113 5 1 110 221 278329261 278329149 9.040000e-40 174
14 TraesCS7A01G346800 chr2D 95.413 109 4 1 110 217 63660177 63660069 3.250000e-39 172
15 TraesCS7A01G346800 chr2A 94.545 110 5 1 108 216 555342333 555342224 4.210000e-38 169
16 TraesCS7A01G346800 chr5A 93.103 116 5 3 110 224 9470908 9470795 1.510000e-37 167
17 TraesCS7A01G346800 chr5A 92.373 118 6 3 111 227 528581386 528581271 5.440000e-37 165
18 TraesCS7A01G346800 chr1A 94.444 108 5 1 111 217 343396696 343396803 5.440000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G346800 chr7A 509649793 509652251 2458 True 4542 4542 100.000 1 2459 1 chr7A.!!$R3 2458
1 TraesCS7A01G346800 chr7D 423550694 423552540 1846 False 2045 2045 87.199 269 2069 1 chr7D.!!$F3 1800
2 TraesCS7A01G346800 chr7B 440331404 440333504 2100 False 1858 1858 83.482 237 2253 1 chr7B.!!$F1 2016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.034616 CGCTCCTCCTTGGATCCATC 59.965 60.0 17.06 0.0 45.16 3.51 F
119 120 0.178918 CCATCCCTCCTACTCCCTCC 60.179 65.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 1264 0.316204 CTTCACCGACCCGTTGTACT 59.684 55.0 0.00 0.0 0.00 2.73 R
2092 2228 0.394938 AAATTCGGGCCAACCAAACC 59.605 50.0 4.39 0.0 40.22 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.470845 GGATGATGTAAACGTCAGGAAAG 57.529 43.478 10.53 0.00 44.18 2.62
23 24 4.201822 GGATGATGTAAACGTCAGGAAAGC 60.202 45.833 10.53 0.00 44.18 3.51
24 25 3.071479 TGATGTAAACGTCAGGAAAGCC 58.929 45.455 0.84 0.00 37.00 4.35
25 26 2.623878 TGTAAACGTCAGGAAAGCCA 57.376 45.000 0.00 0.00 36.29 4.75
26 27 2.489971 TGTAAACGTCAGGAAAGCCAG 58.510 47.619 0.00 0.00 36.29 4.85
27 28 1.197036 GTAAACGTCAGGAAAGCCAGC 59.803 52.381 0.00 0.00 36.29 4.85
28 29 1.507141 AAACGTCAGGAAAGCCAGCG 61.507 55.000 0.00 0.00 36.29 5.18
29 30 2.357517 CGTCAGGAAAGCCAGCGT 60.358 61.111 0.00 0.00 36.29 5.07
30 31 1.961277 CGTCAGGAAAGCCAGCGTT 60.961 57.895 0.00 0.00 36.29 4.84
31 32 1.507141 CGTCAGGAAAGCCAGCGTTT 61.507 55.000 0.00 0.00 36.29 3.60
32 33 0.238553 GTCAGGAAAGCCAGCGTTTC 59.761 55.000 0.00 0.14 36.29 2.78
33 34 0.108585 TCAGGAAAGCCAGCGTTTCT 59.891 50.000 11.60 4.44 34.81 2.52
34 35 0.239347 CAGGAAAGCCAGCGTTTCTG 59.761 55.000 11.41 11.41 42.49 3.02
35 36 1.081175 GGAAAGCCAGCGTTTCTGC 60.081 57.895 11.60 0.00 41.50 4.26
37 38 1.156736 GAAAGCCAGCGTTTCTGCTA 58.843 50.000 0.00 0.00 45.23 3.49
38 39 0.875059 AAAGCCAGCGTTTCTGCTAC 59.125 50.000 0.00 0.00 45.23 3.58
39 40 1.291877 AAGCCAGCGTTTCTGCTACG 61.292 55.000 0.00 0.00 45.23 3.51
44 45 4.261888 CGTTTCTGCTACGCCAGT 57.738 55.556 0.00 0.00 34.47 4.00
45 46 1.781555 CGTTTCTGCTACGCCAGTG 59.218 57.895 0.00 0.00 34.47 3.66
46 47 0.666274 CGTTTCTGCTACGCCAGTGA 60.666 55.000 0.00 0.00 34.47 3.41
47 48 1.071605 GTTTCTGCTACGCCAGTGAG 58.928 55.000 0.00 0.00 34.47 3.51
48 49 0.679505 TTTCTGCTACGCCAGTGAGT 59.320 50.000 0.00 0.00 34.47 3.41
49 50 0.679505 TTCTGCTACGCCAGTGAGTT 59.320 50.000 0.00 0.00 34.47 3.01
50 51 1.541379 TCTGCTACGCCAGTGAGTTA 58.459 50.000 0.00 0.00 34.47 2.24
51 52 1.890489 TCTGCTACGCCAGTGAGTTAA 59.110 47.619 0.00 0.00 34.47 2.01
52 53 2.496070 TCTGCTACGCCAGTGAGTTAAT 59.504 45.455 0.00 0.00 34.47 1.40
53 54 2.604914 CTGCTACGCCAGTGAGTTAATG 59.395 50.000 0.00 0.00 0.00 1.90
67 68 9.994432 CAGTGAGTTAATGGAATAAGATGTTTC 57.006 33.333 0.00 0.00 0.00 2.78
68 69 9.739276 AGTGAGTTAATGGAATAAGATGTTTCA 57.261 29.630 0.00 0.00 0.00 2.69
93 94 4.724262 AAAAAGGCTCGCTCCTCC 57.276 55.556 0.00 0.00 34.82 4.30
94 95 2.070639 AAAAAGGCTCGCTCCTCCT 58.929 52.632 0.00 0.00 34.82 3.69
95 96 0.402121 AAAAAGGCTCGCTCCTCCTT 59.598 50.000 0.00 0.00 41.64 3.36
96 97 0.322008 AAAAGGCTCGCTCCTCCTTG 60.322 55.000 0.00 0.00 39.90 3.61
97 98 2.190488 AAAGGCTCGCTCCTCCTTGG 62.190 60.000 0.00 0.00 39.90 3.61
98 99 3.077556 GGCTCGCTCCTCCTTGGA 61.078 66.667 0.00 0.00 43.86 3.53
99 100 2.439104 GGCTCGCTCCTCCTTGGAT 61.439 63.158 0.00 0.00 45.16 3.41
100 101 1.068921 GCTCGCTCCTCCTTGGATC 59.931 63.158 0.00 0.00 45.16 3.36
101 102 1.745264 CTCGCTCCTCCTTGGATCC 59.255 63.158 4.20 4.20 45.16 3.36
102 103 1.001631 TCGCTCCTCCTTGGATCCA 59.998 57.895 11.44 11.44 45.16 3.41
103 104 0.399091 TCGCTCCTCCTTGGATCCAT 60.399 55.000 17.06 0.00 45.16 3.41
104 105 0.034616 CGCTCCTCCTTGGATCCATC 59.965 60.000 17.06 0.00 45.16 3.51
105 106 0.399833 GCTCCTCCTTGGATCCATCC 59.600 60.000 17.06 0.00 45.16 3.51
106 107 1.063183 CTCCTCCTTGGATCCATCCC 58.937 60.000 17.06 0.00 46.59 3.85
107 108 0.649992 TCCTCCTTGGATCCATCCCT 59.350 55.000 17.06 0.00 46.59 4.20
108 109 1.063183 CCTCCTTGGATCCATCCCTC 58.937 60.000 17.06 0.00 46.59 4.30
109 110 1.063183 CTCCTTGGATCCATCCCTCC 58.937 60.000 17.06 0.00 46.59 4.30
110 111 0.649992 TCCTTGGATCCATCCCTCCT 59.350 55.000 17.06 0.00 46.59 3.69
111 112 1.873049 TCCTTGGATCCATCCCTCCTA 59.127 52.381 17.06 0.00 46.59 2.94
112 113 1.981495 CCTTGGATCCATCCCTCCTAC 59.019 57.143 17.06 0.00 46.59 3.18
113 114 2.428484 CCTTGGATCCATCCCTCCTACT 60.428 54.545 17.06 0.00 46.59 2.57
114 115 2.704190 TGGATCCATCCCTCCTACTC 57.296 55.000 11.44 0.00 46.59 2.59
115 116 1.150135 TGGATCCATCCCTCCTACTCC 59.850 57.143 11.44 0.00 46.59 3.85
116 117 1.553651 GGATCCATCCCTCCTACTCCC 60.554 61.905 6.95 0.00 41.20 4.30
117 118 1.435168 GATCCATCCCTCCTACTCCCT 59.565 57.143 0.00 0.00 0.00 4.20
118 119 0.861155 TCCATCCCTCCTACTCCCTC 59.139 60.000 0.00 0.00 0.00 4.30
119 120 0.178918 CCATCCCTCCTACTCCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
120 121 0.563173 CATCCCTCCTACTCCCTCCA 59.437 60.000 0.00 0.00 0.00 3.86
121 122 1.150986 CATCCCTCCTACTCCCTCCAT 59.849 57.143 0.00 0.00 0.00 3.41
122 123 1.330155 TCCCTCCTACTCCCTCCATT 58.670 55.000 0.00 0.00 0.00 3.16
123 124 1.220750 TCCCTCCTACTCCCTCCATTC 59.779 57.143 0.00 0.00 0.00 2.67
124 125 1.723288 CCTCCTACTCCCTCCATTCC 58.277 60.000 0.00 0.00 0.00 3.01
125 126 1.333177 CTCCTACTCCCTCCATTCCG 58.667 60.000 0.00 0.00 0.00 4.30
126 127 0.931468 TCCTACTCCCTCCATTCCGA 59.069 55.000 0.00 0.00 0.00 4.55
127 128 1.289830 TCCTACTCCCTCCATTCCGAA 59.710 52.381 0.00 0.00 0.00 4.30
128 129 2.090719 TCCTACTCCCTCCATTCCGAAT 60.091 50.000 0.00 0.00 0.00 3.34
129 130 2.706190 CCTACTCCCTCCATTCCGAATT 59.294 50.000 0.00 0.00 0.00 2.17
130 131 3.901844 CCTACTCCCTCCATTCCGAATTA 59.098 47.826 0.00 0.00 0.00 1.40
131 132 3.840124 ACTCCCTCCATTCCGAATTAC 57.160 47.619 0.00 0.00 0.00 1.89
132 133 3.385115 ACTCCCTCCATTCCGAATTACT 58.615 45.455 0.00 0.00 0.00 2.24
133 134 3.780850 ACTCCCTCCATTCCGAATTACTT 59.219 43.478 0.00 0.00 0.00 2.24
134 135 4.227527 ACTCCCTCCATTCCGAATTACTTT 59.772 41.667 0.00 0.00 0.00 2.66
135 136 4.777463 TCCCTCCATTCCGAATTACTTTC 58.223 43.478 0.00 0.00 0.00 2.62
188 189 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
189 190 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
190 191 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
191 192 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
192 193 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
193 194 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
194 195 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
195 196 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
196 197 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
197 198 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
198 199 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
199 200 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
200 201 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
201 202 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
202 203 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
203 204 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
204 205 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
205 206 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
206 207 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
207 208 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
208 209 1.657094 CGACGAGTAATTTGGAACGGG 59.343 52.381 0.00 0.00 0.00 5.28
209 210 2.004733 GACGAGTAATTTGGAACGGGG 58.995 52.381 0.00 0.00 0.00 5.73
210 211 1.339342 ACGAGTAATTTGGAACGGGGG 60.339 52.381 0.00 0.00 0.00 5.40
227 228 1.416772 GGGGGAGTACCAATCACTAGC 59.583 57.143 0.00 0.00 42.91 3.42
228 229 2.116238 GGGGAGTACCAATCACTAGCA 58.884 52.381 0.00 0.00 42.91 3.49
229 230 2.158943 GGGGAGTACCAATCACTAGCAC 60.159 54.545 0.00 0.00 42.91 4.40
230 231 2.766828 GGGAGTACCAATCACTAGCACT 59.233 50.000 0.00 0.00 39.85 4.40
231 232 3.181474 GGGAGTACCAATCACTAGCACTC 60.181 52.174 0.00 0.00 39.85 3.51
232 233 3.447586 GGAGTACCAATCACTAGCACTCA 59.552 47.826 0.00 0.00 34.09 3.41
233 234 4.425520 GAGTACCAATCACTAGCACTCAC 58.574 47.826 0.00 0.00 32.96 3.51
234 235 3.832490 AGTACCAATCACTAGCACTCACA 59.168 43.478 0.00 0.00 0.00 3.58
235 236 3.045601 ACCAATCACTAGCACTCACAC 57.954 47.619 0.00 0.00 0.00 3.82
251 252 0.814457 ACACACGCACCAACACAAAT 59.186 45.000 0.00 0.00 0.00 2.32
258 259 4.800993 CACGCACCAACACAAATAGAAAAA 59.199 37.500 0.00 0.00 0.00 1.94
350 355 9.522804 TTACAAATAGCAAAAGTGTTTTCGAAT 57.477 25.926 0.00 0.00 0.00 3.34
353 358 8.963130 CAAATAGCAAAAGTGTTTTCGAATGTA 58.037 29.630 0.00 0.00 0.00 2.29
408 415 8.494347 TGAGTTGAACAACACATTTTGAAAAAG 58.506 29.630 17.85 0.00 43.47 2.27
432 439 8.200364 AGAAAGGAAACAATGTCACAAAAATG 57.800 30.769 0.00 0.00 0.00 2.32
435 442 6.638610 AGGAAACAATGTCACAAAAATGTGA 58.361 32.000 7.53 7.53 45.41 3.58
479 487 3.214697 TCAATGCTTTACCAACATGCG 57.785 42.857 0.00 0.00 0.00 4.73
519 528 6.642707 AAAGATTCATCTAGGACTAGACGG 57.357 41.667 11.00 7.23 44.11 4.79
577 588 7.841915 ATTTGAGAATGTCGGTTTTGTTTTT 57.158 28.000 0.00 0.00 0.00 1.94
723 743 4.657814 ACTCCATGTCCCAGTGTTTTAT 57.342 40.909 0.00 0.00 0.00 1.40
724 744 4.589908 ACTCCATGTCCCAGTGTTTTATC 58.410 43.478 0.00 0.00 0.00 1.75
730 750 8.723365 TCCATGTCCCAGTGTTTTATCTATTAT 58.277 33.333 0.00 0.00 0.00 1.28
766 788 1.913403 GACGTTACATTCCCACGTACG 59.087 52.381 15.01 15.01 46.77 3.67
777 800 1.589727 CACGTACGCCCCGGTTATC 60.590 63.158 16.72 0.00 0.00 1.75
833 856 2.313234 CGTCGCTAACTTTGTCTTCGA 58.687 47.619 0.00 0.00 0.00 3.71
845 868 2.526077 TGTCTTCGACGTATGTGCATC 58.474 47.619 0.00 0.00 34.95 3.91
924 947 2.464459 CCTTCGCCCACGCAGAATC 61.464 63.158 0.00 0.00 34.19 2.52
965 988 4.983538 TGATGTTACACAATGCAGCAAAAG 59.016 37.500 0.00 0.00 0.00 2.27
974 997 0.525242 TGCAGCAAAAGCAACGTGAC 60.525 50.000 0.00 0.00 39.39 3.67
975 998 1.531522 GCAGCAAAAGCAACGTGACG 61.532 55.000 2.24 2.24 0.00 4.35
991 1014 1.687494 GACGCCTAGCTTGTTCGCAG 61.687 60.000 0.00 0.00 0.00 5.18
1005 1028 2.023741 GCAGTTGCGCCGATGATG 59.976 61.111 4.18 0.00 0.00 3.07
1006 1029 2.023741 CAGTTGCGCCGATGATGC 59.976 61.111 4.18 0.00 0.00 3.91
1007 1030 3.204827 AGTTGCGCCGATGATGCC 61.205 61.111 4.18 0.00 0.00 4.40
1071 1097 3.041940 CGCTTGGTCGTCGCCTTT 61.042 61.111 7.14 0.00 0.00 3.11
1092 1118 2.258726 GGCCTTCCTGTTCGCGTTT 61.259 57.895 5.77 0.00 0.00 3.60
1098 1124 0.941542 TCCTGTTCGCGTTTTTCCTG 59.058 50.000 5.77 0.00 0.00 3.86
1175 1213 2.280052 GCTGCTCCGAGATCTGCC 60.280 66.667 0.00 0.00 0.00 4.85
1232 1270 0.320073 CTCCCGGCGTTCAAGTACAA 60.320 55.000 6.01 0.00 0.00 2.41
1546 1589 0.247736 AGGCGTCAGCTCAGTTTAGG 59.752 55.000 0.00 0.00 44.37 2.69
1547 1590 0.037232 GGCGTCAGCTCAGTTTAGGT 60.037 55.000 0.00 0.00 44.37 3.08
1699 1793 9.778993 CTAAATGTCCATTTTGTAGAGTTCATG 57.221 33.333 10.27 0.00 40.99 3.07
1710 1804 0.798776 GAGTTCATGCACAGGTTCGG 59.201 55.000 0.00 0.00 0.00 4.30
1711 1805 1.210155 GTTCATGCACAGGTTCGGC 59.790 57.895 0.00 0.00 0.00 5.54
1733 1835 6.293407 CGGCTAAATCCATAACAATCATTCGT 60.293 38.462 0.00 0.00 0.00 3.85
1737 1839 6.867662 AATCCATAACAATCATTCGTCTCC 57.132 37.500 0.00 0.00 0.00 3.71
1741 1843 5.237344 CCATAACAATCATTCGTCTCCCTTC 59.763 44.000 0.00 0.00 0.00 3.46
1743 1845 3.600388 ACAATCATTCGTCTCCCTTCAC 58.400 45.455 0.00 0.00 0.00 3.18
1761 1863 3.146066 TCACAGATAAAGCAACCACCAC 58.854 45.455 0.00 0.00 0.00 4.16
1778 1880 6.252995 ACCACCACATCCATACAATAAGTTT 58.747 36.000 0.00 0.00 0.00 2.66
1953 2085 3.313526 CCTAAATAGCATGTGACAGTGCC 59.686 47.826 13.64 0.00 42.20 5.01
1985 2117 4.997395 CCCAGGAATTTGGATATACAGTCG 59.003 45.833 0.00 0.00 40.87 4.18
2045 2181 2.859165 ATGTGTCGTCCAAATGGTCT 57.141 45.000 0.00 0.00 36.34 3.85
2062 2198 3.767131 TGGTCTAGGTCATCGTCATGAAA 59.233 43.478 0.00 0.00 40.90 2.69
2071 2207 7.383687 AGGTCATCGTCATGAAAACTAAGTAA 58.616 34.615 0.00 0.00 40.90 2.24
2092 2228 4.609098 AGGCATCTCCTCCTACCG 57.391 61.111 0.00 0.00 43.20 4.02
2095 2231 1.049289 GGCATCTCCTCCTACCGGTT 61.049 60.000 15.04 0.00 0.00 4.44
2108 2256 2.907917 CGGTTTGGTTGGCCCGAA 60.908 61.111 0.00 0.00 43.01 4.30
2113 2261 0.682292 TTTGGTTGGCCCGAATTTCC 59.318 50.000 0.00 0.00 31.10 3.13
2125 2273 2.813754 CCGAATTTCCAGAAACTCAGCA 59.186 45.455 2.91 0.00 32.51 4.41
2126 2274 3.253188 CCGAATTTCCAGAAACTCAGCAA 59.747 43.478 2.91 0.00 32.51 3.91
2127 2275 4.470462 CGAATTTCCAGAAACTCAGCAAG 58.530 43.478 2.91 0.00 32.51 4.01
2128 2276 4.614535 CGAATTTCCAGAAACTCAGCAAGG 60.615 45.833 2.91 0.00 32.51 3.61
2129 2277 3.297134 TTTCCAGAAACTCAGCAAGGT 57.703 42.857 0.00 0.00 0.00 3.50
2130 2278 2.550830 TCCAGAAACTCAGCAAGGTC 57.449 50.000 0.00 0.00 0.00 3.85
2133 2281 2.575532 CAGAAACTCAGCAAGGTCCAA 58.424 47.619 0.00 0.00 0.00 3.53
2139 2287 1.228675 CAGCAAGGTCCAAGGCCTT 60.229 57.895 13.78 13.78 46.39 4.35
2141 2289 1.002857 AGCAAGGTCCAAGGCCTTAT 58.997 50.000 20.00 0.00 43.87 1.73
2147 2295 4.713792 AGGTCCAAGGCCTTATATTCAG 57.286 45.455 20.00 3.43 31.04 3.02
2157 2305 6.326970 AGGCCTTATATTCAGGTCATAGAGT 58.673 40.000 0.00 0.00 38.65 3.24
2159 2307 6.326375 GCCTTATATTCAGGTCATAGAGTCG 58.674 44.000 3.25 0.00 33.40 4.18
2178 2326 3.206964 TCGCACAGACAAATACACCAAA 58.793 40.909 0.00 0.00 0.00 3.28
2208 2356 3.375299 ACAATAATGCAGGCGAAGAAGAC 59.625 43.478 0.00 0.00 0.00 3.01
2209 2357 2.760634 TAATGCAGGCGAAGAAGACA 57.239 45.000 0.00 0.00 0.00 3.41
2212 2360 0.674581 TGCAGGCGAAGAAGACATGG 60.675 55.000 0.00 0.00 0.00 3.66
2214 2362 1.078143 AGGCGAAGAAGACATGGGC 60.078 57.895 0.00 0.00 0.00 5.36
2224 2372 0.253160 AGACATGGGCCCCAGTCTTA 60.253 55.000 30.60 9.17 38.14 2.10
2225 2373 0.181350 GACATGGGCCCCAGTCTTAG 59.819 60.000 27.77 9.99 36.75 2.18
2241 2389 2.972713 TCTTAGGGACAGCACAAAGAGT 59.027 45.455 0.00 0.00 0.00 3.24
2242 2390 5.330561 GTCTTAGGGACAGCACAAAGAGTG 61.331 50.000 0.00 0.00 46.08 3.51
2253 2401 1.603802 ACAAAGAGTGCACAACCATCG 59.396 47.619 21.04 3.43 0.00 3.84
2254 2402 1.603802 CAAAGAGTGCACAACCATCGT 59.396 47.619 21.04 2.40 0.00 3.73
2255 2403 1.512926 AAGAGTGCACAACCATCGTC 58.487 50.000 21.04 4.91 0.00 4.20
2256 2404 0.392706 AGAGTGCACAACCATCGTCA 59.607 50.000 21.04 0.00 0.00 4.35
2257 2405 1.002430 AGAGTGCACAACCATCGTCAT 59.998 47.619 21.04 0.00 0.00 3.06
2258 2406 1.129251 GAGTGCACAACCATCGTCATG 59.871 52.381 21.04 0.00 0.00 3.07
2259 2407 0.874390 GTGCACAACCATCGTCATGT 59.126 50.000 13.17 0.00 0.00 3.21
2260 2408 1.135972 GTGCACAACCATCGTCATGTC 60.136 52.381 13.17 0.00 0.00 3.06
2261 2409 0.447801 GCACAACCATCGTCATGTCC 59.552 55.000 0.00 0.00 0.00 4.02
2262 2410 1.807139 CACAACCATCGTCATGTCCA 58.193 50.000 0.00 0.00 0.00 4.02
2263 2411 2.358957 CACAACCATCGTCATGTCCAT 58.641 47.619 0.00 0.00 0.00 3.41
2264 2412 2.096335 CACAACCATCGTCATGTCCATG 59.904 50.000 0.71 0.71 40.09 3.66
2265 2413 1.064505 CAACCATCGTCATGTCCATGC 59.935 52.381 2.33 0.00 38.65 4.06
2266 2414 0.464373 ACCATCGTCATGTCCATGCC 60.464 55.000 2.33 0.00 38.65 4.40
2267 2415 1.501337 CCATCGTCATGTCCATGCCG 61.501 60.000 4.46 4.46 41.00 5.69
2268 2416 1.889105 ATCGTCATGTCCATGCCGC 60.889 57.895 5.88 0.00 39.67 6.53
2269 2417 2.315781 ATCGTCATGTCCATGCCGCT 62.316 55.000 5.88 0.00 39.67 5.52
2270 2418 2.108514 CGTCATGTCCATGCCGCTT 61.109 57.895 2.33 0.00 33.44 4.68
2271 2419 1.430632 GTCATGTCCATGCCGCTTG 59.569 57.895 2.33 0.00 38.65 4.01
2272 2420 1.026182 GTCATGTCCATGCCGCTTGA 61.026 55.000 7.80 0.00 38.65 3.02
2273 2421 1.026182 TCATGTCCATGCCGCTTGAC 61.026 55.000 7.80 4.52 38.65 3.18
2274 2422 1.750399 ATGTCCATGCCGCTTGACC 60.750 57.895 7.80 0.00 0.00 4.02
2275 2423 2.359850 GTCCATGCCGCTTGACCA 60.360 61.111 7.80 0.00 0.00 4.02
2276 2424 2.359850 TCCATGCCGCTTGACCAC 60.360 61.111 7.80 0.00 0.00 4.16
2277 2425 3.443045 CCATGCCGCTTGACCACC 61.443 66.667 7.80 0.00 0.00 4.61
2278 2426 2.360350 CATGCCGCTTGACCACCT 60.360 61.111 0.00 0.00 0.00 4.00
2279 2427 1.973281 CATGCCGCTTGACCACCTT 60.973 57.895 0.00 0.00 0.00 3.50
2280 2428 1.675641 ATGCCGCTTGACCACCTTC 60.676 57.895 0.00 0.00 0.00 3.46
2281 2429 3.423154 GCCGCTTGACCACCTTCG 61.423 66.667 0.00 0.00 0.00 3.79
2282 2430 2.030562 CCGCTTGACCACCTTCGT 59.969 61.111 0.00 0.00 0.00 3.85
2283 2431 2.027625 CCGCTTGACCACCTTCGTC 61.028 63.158 0.00 0.00 0.00 4.20
2284 2432 2.027625 CGCTTGACCACCTTCGTCC 61.028 63.158 0.00 0.00 0.00 4.79
2285 2433 1.671379 GCTTGACCACCTTCGTCCC 60.671 63.158 0.00 0.00 0.00 4.46
2286 2434 1.003718 CTTGACCACCTTCGTCCCC 60.004 63.158 0.00 0.00 0.00 4.81
2287 2435 2.781595 CTTGACCACCTTCGTCCCCG 62.782 65.000 0.00 0.00 0.00 5.73
2288 2436 2.993264 GACCACCTTCGTCCCCGA 60.993 66.667 0.00 0.00 42.41 5.14
2289 2437 2.284405 ACCACCTTCGTCCCCGAT 60.284 61.111 0.00 0.00 43.80 4.18
2290 2438 2.294132 GACCACCTTCGTCCCCGATC 62.294 65.000 0.00 0.00 43.80 3.69
2291 2439 2.104331 CACCTTCGTCCCCGATCG 59.896 66.667 8.51 8.51 43.80 3.69
2292 2440 3.145551 ACCTTCGTCCCCGATCGG 61.146 66.667 27.65 27.65 43.80 4.18
2293 2441 2.831742 CCTTCGTCCCCGATCGGA 60.832 66.667 35.42 14.15 43.80 4.55
2294 2442 2.722487 CTTCGTCCCCGATCGGAG 59.278 66.667 35.42 23.69 43.80 4.63
2295 2443 1.822613 CTTCGTCCCCGATCGGAGA 60.823 63.158 35.42 25.89 43.80 3.71
2296 2444 1.152819 TTCGTCCCCGATCGGAGAT 60.153 57.895 35.42 0.00 45.12 2.75
2297 2445 1.452953 TTCGTCCCCGATCGGAGATG 61.453 60.000 35.42 30.81 45.12 2.90
2298 2446 1.897137 CGTCCCCGATCGGAGATGA 60.897 63.158 35.42 21.15 45.12 2.92
2299 2447 1.244697 CGTCCCCGATCGGAGATGAT 61.245 60.000 35.42 0.00 45.12 2.45
2300 2448 0.969894 GTCCCCGATCGGAGATGATT 59.030 55.000 35.42 0.00 45.12 2.57
2301 2449 2.168496 GTCCCCGATCGGAGATGATTA 58.832 52.381 35.42 1.42 45.12 1.75
2302 2450 2.561419 GTCCCCGATCGGAGATGATTAA 59.439 50.000 35.42 0.57 45.12 1.40
2303 2451 2.826128 TCCCCGATCGGAGATGATTAAG 59.174 50.000 35.42 13.83 45.12 1.85
2304 2452 2.826128 CCCCGATCGGAGATGATTAAGA 59.174 50.000 35.42 0.00 45.12 2.10
2305 2453 3.258372 CCCCGATCGGAGATGATTAAGAA 59.742 47.826 35.42 0.00 45.12 2.52
2306 2454 4.489810 CCCGATCGGAGATGATTAAGAAG 58.510 47.826 35.42 9.28 45.12 2.85
2307 2455 4.218635 CCCGATCGGAGATGATTAAGAAGA 59.781 45.833 35.42 0.00 45.12 2.87
2308 2456 5.279006 CCCGATCGGAGATGATTAAGAAGAA 60.279 44.000 35.42 0.00 45.12 2.52
2309 2457 5.861251 CCGATCGGAGATGATTAAGAAGAAG 59.139 44.000 30.62 0.00 45.12 2.85
2310 2458 5.344665 CGATCGGAGATGATTAAGAAGAAGC 59.655 44.000 7.38 0.00 45.12 3.86
2311 2459 4.950050 TCGGAGATGATTAAGAAGAAGCC 58.050 43.478 0.00 0.00 0.00 4.35
2312 2460 3.738282 CGGAGATGATTAAGAAGAAGCCG 59.262 47.826 0.00 0.00 0.00 5.52
2313 2461 3.496507 GGAGATGATTAAGAAGAAGCCGC 59.503 47.826 0.00 0.00 0.00 6.53
2314 2462 3.471680 AGATGATTAAGAAGAAGCCGCC 58.528 45.455 0.00 0.00 0.00 6.13
2315 2463 2.779755 TGATTAAGAAGAAGCCGCCA 57.220 45.000 0.00 0.00 0.00 5.69
2316 2464 2.356135 TGATTAAGAAGAAGCCGCCAC 58.644 47.619 0.00 0.00 0.00 5.01
2317 2465 2.290008 TGATTAAGAAGAAGCCGCCACA 60.290 45.455 0.00 0.00 0.00 4.17
2318 2466 1.519408 TTAAGAAGAAGCCGCCACAC 58.481 50.000 0.00 0.00 0.00 3.82
2319 2467 0.394938 TAAGAAGAAGCCGCCACACA 59.605 50.000 0.00 0.00 0.00 3.72
2320 2468 0.465460 AAGAAGAAGCCGCCACACAA 60.465 50.000 0.00 0.00 0.00 3.33
2321 2469 0.465460 AGAAGAAGCCGCCACACAAA 60.465 50.000 0.00 0.00 0.00 2.83
2322 2470 0.040067 GAAGAAGCCGCCACACAAAG 60.040 55.000 0.00 0.00 0.00 2.77
2323 2471 0.465460 AAGAAGCCGCCACACAAAGA 60.465 50.000 0.00 0.00 0.00 2.52
2324 2472 0.250901 AGAAGCCGCCACACAAAGAT 60.251 50.000 0.00 0.00 0.00 2.40
2325 2473 0.169009 GAAGCCGCCACACAAAGATC 59.831 55.000 0.00 0.00 0.00 2.75
2326 2474 0.250901 AAGCCGCCACACAAAGATCT 60.251 50.000 0.00 0.00 0.00 2.75
2327 2475 0.250901 AGCCGCCACACAAAGATCTT 60.251 50.000 0.88 0.88 0.00 2.40
2328 2476 1.003118 AGCCGCCACACAAAGATCTTA 59.997 47.619 8.75 0.00 0.00 2.10
2329 2477 1.810151 GCCGCCACACAAAGATCTTAA 59.190 47.619 8.75 0.00 0.00 1.85
2330 2478 2.423538 GCCGCCACACAAAGATCTTAAT 59.576 45.455 8.75 0.00 0.00 1.40
2331 2479 3.487544 GCCGCCACACAAAGATCTTAATC 60.488 47.826 8.75 0.00 0.00 1.75
2332 2480 3.941483 CCGCCACACAAAGATCTTAATCT 59.059 43.478 8.75 0.00 44.37 2.40
2346 2494 8.526667 AGATCTTAATCTTTAAAGGAAAGGGC 57.473 34.615 15.13 10.70 44.18 5.19
2347 2495 8.116026 AGATCTTAATCTTTAAAGGAAAGGGCA 58.884 33.333 15.13 2.60 44.18 5.36
2348 2496 7.462571 TCTTAATCTTTAAAGGAAAGGGCAC 57.537 36.000 15.13 0.00 44.18 5.01
2349 2497 7.238710 TCTTAATCTTTAAAGGAAAGGGCACT 58.761 34.615 15.13 0.00 44.18 4.40
2350 2498 7.728532 TCTTAATCTTTAAAGGAAAGGGCACTT 59.271 33.333 15.13 0.00 44.18 3.16
2360 2508 3.541996 AAAGGGCACTTTCCACAAAAG 57.458 42.857 8.52 0.00 43.21 2.27
2370 2518 3.834726 CACAAAAGGCGTGGTCCA 58.165 55.556 0.00 0.00 0.00 4.02
2371 2519 2.340427 CACAAAAGGCGTGGTCCAT 58.660 52.632 0.00 0.00 0.00 3.41
2372 2520 0.039256 CACAAAAGGCGTGGTCCATG 60.039 55.000 6.73 6.73 0.00 3.66
2373 2521 1.080569 CAAAAGGCGTGGTCCATGC 60.081 57.895 25.56 25.56 44.69 4.06
2374 2522 2.625823 AAAAGGCGTGGTCCATGCG 61.626 57.895 26.22 13.11 46.18 4.73
2393 2541 2.280119 GAGTCGGCGCATGGCATA 60.280 61.111 10.83 0.00 46.16 3.14
2394 2542 2.280389 AGTCGGCGCATGGCATAG 60.280 61.111 10.83 0.00 46.16 2.23
2395 2543 2.280119 GTCGGCGCATGGCATAGA 60.280 61.111 10.83 0.00 46.16 1.98
2396 2544 2.029518 TCGGCGCATGGCATAGAG 59.970 61.111 10.83 0.00 46.16 2.43
2397 2545 3.046087 CGGCGCATGGCATAGAGG 61.046 66.667 10.83 0.00 46.16 3.69
2398 2546 2.670934 GGCGCATGGCATAGAGGG 60.671 66.667 10.83 0.00 46.16 4.30
2399 2547 2.111878 GCGCATGGCATAGAGGGT 59.888 61.111 0.30 0.00 42.87 4.34
2400 2548 2.256591 GCGCATGGCATAGAGGGTG 61.257 63.158 0.30 0.00 42.87 4.61
2401 2549 1.598962 CGCATGGCATAGAGGGTGG 60.599 63.158 0.00 0.00 0.00 4.61
2402 2550 1.228367 GCATGGCATAGAGGGTGGG 60.228 63.158 0.00 0.00 0.00 4.61
2403 2551 1.999634 GCATGGCATAGAGGGTGGGT 62.000 60.000 0.00 0.00 0.00 4.51
2404 2552 1.434188 CATGGCATAGAGGGTGGGTA 58.566 55.000 0.00 0.00 0.00 3.69
2405 2553 1.988107 CATGGCATAGAGGGTGGGTAT 59.012 52.381 0.00 0.00 0.00 2.73
2406 2554 1.434188 TGGCATAGAGGGTGGGTATG 58.566 55.000 0.00 0.00 0.00 2.39
2407 2555 0.036875 GGCATAGAGGGTGGGTATGC 59.963 60.000 5.21 5.21 45.54 3.14
2408 2556 0.036875 GCATAGAGGGTGGGTATGCC 59.963 60.000 2.74 0.00 42.10 4.40
2409 2557 0.321671 CATAGAGGGTGGGTATGCCG 59.678 60.000 0.00 0.00 34.97 5.69
2410 2558 0.836400 ATAGAGGGTGGGTATGCCGG 60.836 60.000 0.00 0.00 34.97 6.13
2411 2559 2.957902 TAGAGGGTGGGTATGCCGGG 62.958 65.000 2.18 0.00 34.97 5.73
2423 2571 2.747855 GCCGGGGCAACAGAGAAG 60.748 66.667 2.18 0.00 41.49 2.85
2424 2572 3.068881 CCGGGGCAACAGAGAAGA 58.931 61.111 0.00 0.00 39.74 2.87
2425 2573 1.078848 CCGGGGCAACAGAGAAGAG 60.079 63.158 0.00 0.00 39.74 2.85
2426 2574 1.743252 CGGGGCAACAGAGAAGAGC 60.743 63.158 0.00 0.00 39.74 4.09
2427 2575 1.377856 GGGGCAACAGAGAAGAGCC 60.378 63.158 0.00 0.00 44.48 4.70
2428 2576 4.310288 GGCAACAGAGAAGAGCCC 57.690 61.111 0.00 0.00 39.42 5.19
2429 2577 1.376466 GGCAACAGAGAAGAGCCCA 59.624 57.895 0.00 0.00 39.42 5.36
2430 2578 0.250901 GGCAACAGAGAAGAGCCCAA 60.251 55.000 0.00 0.00 39.42 4.12
2431 2579 1.609208 GCAACAGAGAAGAGCCCAAA 58.391 50.000 0.00 0.00 0.00 3.28
2432 2580 1.268079 GCAACAGAGAAGAGCCCAAAC 59.732 52.381 0.00 0.00 0.00 2.93
2433 2581 2.575532 CAACAGAGAAGAGCCCAAACA 58.424 47.619 0.00 0.00 0.00 2.83
2434 2582 2.551459 CAACAGAGAAGAGCCCAAACAG 59.449 50.000 0.00 0.00 0.00 3.16
2435 2583 1.072965 ACAGAGAAGAGCCCAAACAGG 59.927 52.381 0.00 0.00 37.03 4.00
2444 2592 2.736531 CCAAACAGGGCCAAGTGC 59.263 61.111 6.18 0.00 40.16 4.40
2456 2604 1.260561 GCCAAGTGCCAATATACGACG 59.739 52.381 0.00 0.00 0.00 5.12
2457 2605 1.260561 CCAAGTGCCAATATACGACGC 59.739 52.381 0.00 0.00 0.00 5.19
2458 2606 1.930503 CAAGTGCCAATATACGACGCA 59.069 47.619 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.201822 GCTTTCCTGACGTTTACATCATCC 60.202 45.833 0.00 0.00 0.00 3.51
1 2 4.201822 GGCTTTCCTGACGTTTACATCATC 60.202 45.833 0.00 0.00 0.00 2.92
2 3 3.689649 GGCTTTCCTGACGTTTACATCAT 59.310 43.478 0.00 0.00 0.00 2.45
3 4 3.071479 GGCTTTCCTGACGTTTACATCA 58.929 45.455 0.00 0.00 0.00 3.07
4 5 3.071479 TGGCTTTCCTGACGTTTACATC 58.929 45.455 0.00 0.00 0.00 3.06
5 6 3.074412 CTGGCTTTCCTGACGTTTACAT 58.926 45.455 0.00 0.00 33.56 2.29
6 7 2.489971 CTGGCTTTCCTGACGTTTACA 58.510 47.619 0.00 0.00 33.56 2.41
7 8 1.197036 GCTGGCTTTCCTGACGTTTAC 59.803 52.381 0.00 0.00 33.56 2.01
8 9 1.519408 GCTGGCTTTCCTGACGTTTA 58.481 50.000 0.00 0.00 33.56 2.01
9 10 1.507141 CGCTGGCTTTCCTGACGTTT 61.507 55.000 0.00 0.00 33.56 3.60
10 11 1.961277 CGCTGGCTTTCCTGACGTT 60.961 57.895 0.00 0.00 33.56 3.99
11 12 2.357517 CGCTGGCTTTCCTGACGT 60.358 61.111 0.00 0.00 33.56 4.34
12 13 1.507141 AAACGCTGGCTTTCCTGACG 61.507 55.000 0.00 0.00 37.11 4.35
13 14 0.238553 GAAACGCTGGCTTTCCTGAC 59.761 55.000 0.00 0.00 33.56 3.51
14 15 0.108585 AGAAACGCTGGCTTTCCTGA 59.891 50.000 11.10 0.00 33.56 3.86
15 16 0.239347 CAGAAACGCTGGCTTTCCTG 59.761 55.000 11.10 0.50 41.07 3.86
16 17 1.518903 GCAGAAACGCTGGCTTTCCT 61.519 55.000 0.00 0.00 45.03 3.36
17 18 1.081175 GCAGAAACGCTGGCTTTCC 60.081 57.895 0.00 0.00 45.03 3.13
18 19 1.135944 GTAGCAGAAACGCTGGCTTTC 60.136 52.381 0.00 8.40 45.03 2.62
19 20 0.875059 GTAGCAGAAACGCTGGCTTT 59.125 50.000 0.00 0.00 45.03 3.51
20 21 1.291877 CGTAGCAGAAACGCTGGCTT 61.292 55.000 0.00 0.00 45.03 4.35
21 22 1.738099 CGTAGCAGAAACGCTGGCT 60.738 57.895 0.00 0.00 45.03 4.75
22 23 2.778679 CGTAGCAGAAACGCTGGC 59.221 61.111 0.00 0.00 45.03 4.85
35 36 3.520290 TCCATTAACTCACTGGCGTAG 57.480 47.619 0.00 0.00 0.00 3.51
36 37 3.965379 TTCCATTAACTCACTGGCGTA 57.035 42.857 0.00 0.00 0.00 4.42
37 38 2.851263 TTCCATTAACTCACTGGCGT 57.149 45.000 0.00 0.00 0.00 5.68
38 39 5.116180 TCTTATTCCATTAACTCACTGGCG 58.884 41.667 0.00 0.00 0.00 5.69
39 40 6.543831 ACATCTTATTCCATTAACTCACTGGC 59.456 38.462 0.00 0.00 0.00 4.85
40 41 8.511604 AACATCTTATTCCATTAACTCACTGG 57.488 34.615 0.00 0.00 0.00 4.00
41 42 9.994432 GAAACATCTTATTCCATTAACTCACTG 57.006 33.333 0.00 0.00 0.00 3.66
42 43 9.739276 TGAAACATCTTATTCCATTAACTCACT 57.261 29.630 0.00 0.00 0.00 3.41
76 77 0.402121 AAGGAGGAGCGAGCCTTTTT 59.598 50.000 0.00 0.00 38.85 1.94
77 78 0.322008 CAAGGAGGAGCGAGCCTTTT 60.322 55.000 0.00 0.00 39.91 2.27
78 79 1.298014 CAAGGAGGAGCGAGCCTTT 59.702 57.895 0.00 0.00 39.91 3.11
79 80 2.664081 CCAAGGAGGAGCGAGCCTT 61.664 63.158 0.00 0.00 42.52 4.35
80 81 3.080121 CCAAGGAGGAGCGAGCCT 61.080 66.667 0.00 0.00 41.22 4.58
81 82 3.077556 TCCAAGGAGGAGCGAGCC 61.078 66.667 0.00 0.00 43.07 4.70
96 97 1.553651 GGGAGTAGGAGGGATGGATCC 60.554 61.905 4.20 4.20 46.41 3.36
97 98 1.435168 AGGGAGTAGGAGGGATGGATC 59.565 57.143 0.00 0.00 0.00 3.36
98 99 1.435168 GAGGGAGTAGGAGGGATGGAT 59.565 57.143 0.00 0.00 0.00 3.41
99 100 0.861155 GAGGGAGTAGGAGGGATGGA 59.139 60.000 0.00 0.00 0.00 3.41
100 101 0.178918 GGAGGGAGTAGGAGGGATGG 60.179 65.000 0.00 0.00 0.00 3.51
101 102 0.563173 TGGAGGGAGTAGGAGGGATG 59.437 60.000 0.00 0.00 0.00 3.51
102 103 1.563616 ATGGAGGGAGTAGGAGGGAT 58.436 55.000 0.00 0.00 0.00 3.85
103 104 1.220750 GAATGGAGGGAGTAGGAGGGA 59.779 57.143 0.00 0.00 0.00 4.20
104 105 1.723288 GAATGGAGGGAGTAGGAGGG 58.277 60.000 0.00 0.00 0.00 4.30
105 106 1.723288 GGAATGGAGGGAGTAGGAGG 58.277 60.000 0.00 0.00 0.00 4.30
106 107 1.133450 TCGGAATGGAGGGAGTAGGAG 60.133 57.143 0.00 0.00 0.00 3.69
107 108 0.931468 TCGGAATGGAGGGAGTAGGA 59.069 55.000 0.00 0.00 0.00 2.94
108 109 1.789523 TTCGGAATGGAGGGAGTAGG 58.210 55.000 0.00 0.00 0.00 3.18
109 110 4.589374 AGTAATTCGGAATGGAGGGAGTAG 59.411 45.833 3.59 0.00 0.00 2.57
110 111 4.553678 AGTAATTCGGAATGGAGGGAGTA 58.446 43.478 3.59 0.00 0.00 2.59
111 112 3.385115 AGTAATTCGGAATGGAGGGAGT 58.615 45.455 3.59 0.00 0.00 3.85
112 113 4.423625 AAGTAATTCGGAATGGAGGGAG 57.576 45.455 3.59 0.00 0.00 4.30
113 114 4.777463 GAAAGTAATTCGGAATGGAGGGA 58.223 43.478 3.59 0.00 0.00 4.20
162 163 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
163 164 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
164 165 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
165 166 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
166 167 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
167 168 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
168 169 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
169 170 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
170 171 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
171 172 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
172 173 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
173 174 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
174 175 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
175 176 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
176 177 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
177 178 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
178 179 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
179 180 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
180 181 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
181 182 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
182 183 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
183 184 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
184 185 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
185 186 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
186 187 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
187 188 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
188 189 1.657094 CCCGTTCCAAATTACTCGTCG 59.343 52.381 0.00 0.00 0.00 5.12
189 190 2.004733 CCCCGTTCCAAATTACTCGTC 58.995 52.381 0.00 0.00 0.00 4.20
190 191 1.339342 CCCCCGTTCCAAATTACTCGT 60.339 52.381 0.00 0.00 0.00 4.18
191 192 1.375551 CCCCCGTTCCAAATTACTCG 58.624 55.000 0.00 0.00 0.00 4.18
207 208 1.416772 GCTAGTGATTGGTACTCCCCC 59.583 57.143 0.00 0.00 0.00 5.40
208 209 2.116238 TGCTAGTGATTGGTACTCCCC 58.884 52.381 0.00 0.00 0.00 4.81
209 210 2.766828 AGTGCTAGTGATTGGTACTCCC 59.233 50.000 0.00 0.00 26.99 4.30
210 211 3.447586 TGAGTGCTAGTGATTGGTACTCC 59.552 47.826 7.02 0.00 45.27 3.85
211 212 4.082190 TGTGAGTGCTAGTGATTGGTACTC 60.082 45.833 3.03 3.03 45.79 2.59
212 213 3.832490 TGTGAGTGCTAGTGATTGGTACT 59.168 43.478 0.00 0.00 35.98 2.73
213 214 3.927142 GTGTGAGTGCTAGTGATTGGTAC 59.073 47.826 0.00 0.00 0.00 3.34
214 215 3.576550 TGTGTGAGTGCTAGTGATTGGTA 59.423 43.478 0.00 0.00 0.00 3.25
215 216 2.368548 TGTGTGAGTGCTAGTGATTGGT 59.631 45.455 0.00 0.00 0.00 3.67
216 217 2.738846 GTGTGTGAGTGCTAGTGATTGG 59.261 50.000 0.00 0.00 0.00 3.16
217 218 2.409715 CGTGTGTGAGTGCTAGTGATTG 59.590 50.000 0.00 0.00 0.00 2.67
218 219 2.677199 CGTGTGTGAGTGCTAGTGATT 58.323 47.619 0.00 0.00 0.00 2.57
219 220 1.670087 GCGTGTGTGAGTGCTAGTGAT 60.670 52.381 0.00 0.00 0.00 3.06
220 221 0.318699 GCGTGTGTGAGTGCTAGTGA 60.319 55.000 0.00 0.00 0.00 3.41
221 222 0.597377 TGCGTGTGTGAGTGCTAGTG 60.597 55.000 0.00 0.00 0.00 2.74
222 223 0.597637 GTGCGTGTGTGAGTGCTAGT 60.598 55.000 0.00 0.00 0.00 2.57
223 224 1.284982 GGTGCGTGTGTGAGTGCTAG 61.285 60.000 0.00 0.00 0.00 3.42
224 225 1.300620 GGTGCGTGTGTGAGTGCTA 60.301 57.895 0.00 0.00 0.00 3.49
225 226 2.588877 GGTGCGTGTGTGAGTGCT 60.589 61.111 0.00 0.00 0.00 4.40
226 227 2.468670 TTGGTGCGTGTGTGAGTGC 61.469 57.895 0.00 0.00 0.00 4.40
227 228 1.351707 GTTGGTGCGTGTGTGAGTG 59.648 57.895 0.00 0.00 0.00 3.51
228 229 1.078778 TGTTGGTGCGTGTGTGAGT 60.079 52.632 0.00 0.00 0.00 3.41
229 230 1.351707 GTGTTGGTGCGTGTGTGAG 59.648 57.895 0.00 0.00 0.00 3.51
230 231 0.955919 TTGTGTTGGTGCGTGTGTGA 60.956 50.000 0.00 0.00 0.00 3.58
231 232 0.109551 TTTGTGTTGGTGCGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
232 233 0.814457 ATTTGTGTTGGTGCGTGTGT 59.186 45.000 0.00 0.00 0.00 3.72
233 234 2.289274 TCTATTTGTGTTGGTGCGTGTG 59.711 45.455 0.00 0.00 0.00 3.82
234 235 2.566913 TCTATTTGTGTTGGTGCGTGT 58.433 42.857 0.00 0.00 0.00 4.49
235 236 3.617540 TTCTATTTGTGTTGGTGCGTG 57.382 42.857 0.00 0.00 0.00 5.34
279 280 9.481340 AGCCACTCATTTTCTTTTATTTCTTTC 57.519 29.630 0.00 0.00 0.00 2.62
333 338 7.160633 ACAATACATTCGAAAACACTTTTGC 57.839 32.000 0.00 0.00 31.94 3.68
346 351 2.285220 CGGGAGCAGAACAATACATTCG 59.715 50.000 0.00 0.00 0.00 3.34
350 355 1.346395 ACACGGGAGCAGAACAATACA 59.654 47.619 0.00 0.00 0.00 2.29
353 358 1.237285 GCACACGGGAGCAGAACAAT 61.237 55.000 0.90 0.00 0.00 2.71
386 391 9.875675 CTTTCTTTTTCAAAATGTGTTGTTCAA 57.124 25.926 0.00 0.00 0.00 2.69
408 415 7.904461 CACATTTTTGTGACATTGTTTCCTTTC 59.096 33.333 0.00 0.00 42.02 2.62
457 464 3.364621 CGCATGTTGGTAAAGCATTGAAC 59.635 43.478 0.00 0.00 0.00 3.18
550 561 5.901552 ACAAAACCGACATTCTCAAATTGT 58.098 33.333 0.00 0.00 0.00 2.71
577 588 1.879380 CATTCGTGAGGTCTTGGCAAA 59.121 47.619 0.00 0.00 0.00 3.68
682 702 5.390991 GGAGTTTCTGCACTAAAATCGGAAG 60.391 44.000 9.74 0.00 33.04 3.46
723 743 6.486657 GTCATGGCTGGCAAGTAAATAATAGA 59.513 38.462 8.35 0.00 0.00 1.98
724 744 6.566564 CGTCATGGCTGGCAAGTAAATAATAG 60.567 42.308 8.35 0.00 0.00 1.73
730 750 1.164411 CGTCATGGCTGGCAAGTAAA 58.836 50.000 8.35 0.00 0.00 2.01
763 785 0.822944 TCGATGATAACCGGGGCGTA 60.823 55.000 6.32 0.00 0.00 4.42
766 788 1.668151 GCTCGATGATAACCGGGGC 60.668 63.158 6.32 0.00 0.00 5.80
777 800 3.374988 TCCTTGCTTGTTTATGCTCGATG 59.625 43.478 0.00 0.00 0.00 3.84
845 868 3.996150 ATTGCTCCGATTTATTGCCAG 57.004 42.857 0.00 0.00 0.00 4.85
899 922 2.325082 CGTGGGCGAAGGGAAACTG 61.325 63.158 0.00 0.00 41.33 3.16
924 947 2.242926 TCAGTCACAACTCCTGAGAGG 58.757 52.381 0.22 0.00 45.11 3.69
941 964 8.239637 GCTTTTGCTGCATTGTGTAACATCAG 62.240 42.308 1.84 0.00 45.31 2.90
965 988 2.027625 AAGCTAGGCGTCACGTTGC 61.028 57.895 0.00 0.00 35.52 4.17
974 997 1.291877 AACTGCGAACAAGCTAGGCG 61.292 55.000 0.00 0.00 38.13 5.52
975 998 0.166814 CAACTGCGAACAAGCTAGGC 59.833 55.000 0.00 0.00 38.13 3.93
1029 1055 3.046390 GACGATGAGCCTACTTTGATCG 58.954 50.000 0.00 0.00 36.57 3.69
1067 1093 1.866853 GAACAGGAAGGCCGCAAAGG 61.867 60.000 0.00 0.00 44.97 3.11
1089 1115 1.661509 GCAGCCGCACAGGAAAAAC 60.662 57.895 0.00 0.00 45.00 2.43
1090 1116 1.827789 AGCAGCCGCACAGGAAAAA 60.828 52.632 0.00 0.00 45.00 1.94
1092 1118 2.979676 CAGCAGCCGCACAGGAAA 60.980 61.111 0.00 0.00 45.00 3.13
1226 1264 0.316204 CTTCACCGACCCGTTGTACT 59.684 55.000 0.00 0.00 0.00 2.73
1232 1270 3.096633 TTGTGCTTCACCGACCCGT 62.097 57.895 0.00 0.00 32.73 5.28
1278 1316 4.969196 AGGCACACCGAGCACGTG 62.969 66.667 12.28 12.28 42.76 4.49
1449 1490 1.586154 CCGTGCAAGCCTAAACAGGG 61.586 60.000 0.00 0.00 0.00 4.45
1477 1518 1.872234 CATGTACGCACGTCCCTCG 60.872 63.158 0.00 0.00 46.00 4.63
1546 1589 1.630244 CGCTGCCTCTTGTGTGCTAC 61.630 60.000 0.00 0.00 0.00 3.58
1547 1590 1.374631 CGCTGCCTCTTGTGTGCTA 60.375 57.895 0.00 0.00 0.00 3.49
1624 1670 5.503498 CCAACGAAACAACGATACAGAAAA 58.497 37.500 0.00 0.00 37.03 2.29
1699 1793 0.733150 GGATTTAGCCGAACCTGTGC 59.267 55.000 0.00 0.00 0.00 4.57
1710 1804 7.865707 AGACGAATGATTGTTATGGATTTAGC 58.134 34.615 0.00 0.00 0.00 3.09
1711 1805 8.499162 GGAGACGAATGATTGTTATGGATTTAG 58.501 37.037 0.00 0.00 0.00 1.85
1733 1835 4.565652 GGTTGCTTTATCTGTGAAGGGAGA 60.566 45.833 0.00 0.00 0.00 3.71
1737 1839 3.191371 GGTGGTTGCTTTATCTGTGAAGG 59.809 47.826 0.00 0.00 0.00 3.46
1741 1843 2.884012 TGTGGTGGTTGCTTTATCTGTG 59.116 45.455 0.00 0.00 0.00 3.66
1743 1845 3.129287 GGATGTGGTGGTTGCTTTATCTG 59.871 47.826 0.00 0.00 0.00 2.90
1778 1880 9.127277 AGCCATTGTTTACTTTTCTTGTACTTA 57.873 29.630 0.00 0.00 0.00 2.24
1800 1902 2.682856 GTTTGTCTTGTTGTCTCAGCCA 59.317 45.455 0.00 0.00 0.00 4.75
1878 2000 3.610040 AGACATTGATGACTACGGCAA 57.390 42.857 0.00 0.00 31.33 4.52
1884 2016 6.152379 GCGACATGATAGACATTGATGACTA 58.848 40.000 0.00 5.82 38.86 2.59
1961 2093 5.454755 CGACTGTATATCCAAATTCCTGGGT 60.455 44.000 0.00 0.00 37.06 4.51
1962 2094 4.997395 CGACTGTATATCCAAATTCCTGGG 59.003 45.833 0.00 0.00 37.06 4.45
1985 2117 1.531739 TTTTCTTGCGATGGGCCACC 61.532 55.000 9.28 0.00 42.61 4.61
2003 2135 3.525199 ACAAGATGGCTATTGAGGGAGTT 59.475 43.478 4.36 0.00 0.00 3.01
2045 2181 6.931838 ACTTAGTTTTCATGACGATGACCTA 58.068 36.000 0.00 0.00 38.38 3.08
2062 2198 6.628644 AGGAGATGCCTCTTTTACTTAGTT 57.371 37.500 0.00 0.00 46.97 2.24
2092 2228 0.394938 AAATTCGGGCCAACCAAACC 59.605 50.000 4.39 0.00 40.22 3.27
2095 2231 0.470080 TGGAAATTCGGGCCAACCAA 60.470 50.000 4.39 0.00 40.22 3.67
2108 2256 3.823304 GACCTTGCTGAGTTTCTGGAAAT 59.177 43.478 0.00 0.00 32.36 2.17
2113 2261 2.260844 TGGACCTTGCTGAGTTTCTG 57.739 50.000 0.00 0.00 0.00 3.02
2126 2274 3.395941 CCTGAATATAAGGCCTTGGACCT 59.604 47.826 28.77 8.41 40.02 3.85
2127 2275 3.138468 ACCTGAATATAAGGCCTTGGACC 59.862 47.826 28.77 13.10 38.48 4.46
2128 2276 4.141482 TGACCTGAATATAAGGCCTTGGAC 60.141 45.833 28.77 17.94 38.48 4.02
2129 2277 4.044308 TGACCTGAATATAAGGCCTTGGA 58.956 43.478 28.77 15.71 38.48 3.53
2130 2278 4.437682 TGACCTGAATATAAGGCCTTGG 57.562 45.455 28.77 20.04 38.48 3.61
2133 2281 6.326970 ACTCTATGACCTGAATATAAGGCCT 58.673 40.000 0.00 0.00 38.48 5.19
2139 2287 5.768164 TGTGCGACTCTATGACCTGAATATA 59.232 40.000 0.00 0.00 0.00 0.86
2141 2289 3.951680 TGTGCGACTCTATGACCTGAATA 59.048 43.478 0.00 0.00 0.00 1.75
2147 2295 1.472878 TGTCTGTGCGACTCTATGACC 59.527 52.381 0.00 0.00 43.25 4.02
2157 2305 2.535012 TGGTGTATTTGTCTGTGCGA 57.465 45.000 0.00 0.00 0.00 5.10
2178 2326 3.368323 CGCCTGCATTATTGTCCCTTTTT 60.368 43.478 0.00 0.00 0.00 1.94
2181 2329 1.064758 TCGCCTGCATTATTGTCCCTT 60.065 47.619 0.00 0.00 0.00 3.95
2183 2331 1.334869 CTTCGCCTGCATTATTGTCCC 59.665 52.381 0.00 0.00 0.00 4.46
2190 2338 2.760634 TGTCTTCTTCGCCTGCATTA 57.239 45.000 0.00 0.00 0.00 1.90
2191 2339 1.741706 CATGTCTTCTTCGCCTGCATT 59.258 47.619 0.00 0.00 0.00 3.56
2193 2341 0.674581 CCATGTCTTCTTCGCCTGCA 60.675 55.000 0.00 0.00 0.00 4.41
2198 2346 2.115291 GGGCCCATGTCTTCTTCGC 61.115 63.158 19.95 0.00 0.00 4.70
2208 2356 1.533711 CCTAAGACTGGGGCCCATG 59.466 63.158 28.95 21.92 30.82 3.66
2209 2357 1.697754 CCCTAAGACTGGGGCCCAT 60.698 63.158 28.95 16.67 40.97 4.00
2212 2360 3.321445 GTCCCTAAGACTGGGGCC 58.679 66.667 0.00 0.00 43.25 5.80
2214 2362 0.909610 TGCTGTCCCTAAGACTGGGG 60.910 60.000 7.30 7.30 46.46 4.96
2224 2372 3.713902 CACTCTTTGTGCTGTCCCT 57.286 52.632 0.00 0.00 40.06 4.20
2241 2389 1.155889 GACATGACGATGGTTGTGCA 58.844 50.000 0.00 0.00 33.39 4.57
2242 2390 0.447801 GGACATGACGATGGTTGTGC 59.552 55.000 0.00 0.00 33.39 4.57
2253 2401 1.026182 TCAAGCGGCATGGACATGAC 61.026 55.000 15.99 12.16 43.37 3.06
2254 2402 1.026182 GTCAAGCGGCATGGACATGA 61.026 55.000 15.99 0.00 41.20 3.07
2255 2403 1.430632 GTCAAGCGGCATGGACATG 59.569 57.895 5.28 7.91 41.60 3.21
2256 2404 1.750399 GGTCAAGCGGCATGGACAT 60.750 57.895 16.63 0.00 32.00 3.06
2257 2405 2.359850 GGTCAAGCGGCATGGACA 60.360 61.111 16.63 0.00 32.00 4.02
2258 2406 2.359850 TGGTCAAGCGGCATGGAC 60.360 61.111 5.28 7.64 0.00 4.02
2259 2407 2.359850 GTGGTCAAGCGGCATGGA 60.360 61.111 5.28 0.00 0.00 3.41
2260 2408 3.443045 GGTGGTCAAGCGGCATGG 61.443 66.667 5.28 0.00 0.00 3.66
2261 2409 1.926511 GAAGGTGGTCAAGCGGCATG 61.927 60.000 1.45 0.00 0.00 4.06
2262 2410 1.675641 GAAGGTGGTCAAGCGGCAT 60.676 57.895 1.45 0.00 0.00 4.40
2263 2411 2.281484 GAAGGTGGTCAAGCGGCA 60.281 61.111 1.45 0.00 0.00 5.69
2264 2412 3.423154 CGAAGGTGGTCAAGCGGC 61.423 66.667 0.00 0.00 0.00 6.53
2265 2413 2.027625 GACGAAGGTGGTCAAGCGG 61.028 63.158 0.00 0.00 34.56 5.52
2266 2414 2.027625 GGACGAAGGTGGTCAAGCG 61.028 63.158 0.00 0.00 36.12 4.68
2267 2415 1.671379 GGGACGAAGGTGGTCAAGC 60.671 63.158 0.00 0.00 36.12 4.01
2268 2416 1.003718 GGGGACGAAGGTGGTCAAG 60.004 63.158 0.00 0.00 36.12 3.02
2269 2417 3.153825 GGGGACGAAGGTGGTCAA 58.846 61.111 0.00 0.00 36.12 3.18
2283 2431 2.826128 TCTTAATCATCTCCGATCGGGG 59.174 50.000 32.79 30.92 37.02 5.73
2284 2432 4.218635 TCTTCTTAATCATCTCCGATCGGG 59.781 45.833 32.79 22.83 35.59 5.14
2285 2433 5.378292 TCTTCTTAATCATCTCCGATCGG 57.622 43.478 28.62 28.62 0.00 4.18
2286 2434 5.344665 GCTTCTTCTTAATCATCTCCGATCG 59.655 44.000 8.51 8.51 0.00 3.69
2287 2435 5.637387 GGCTTCTTCTTAATCATCTCCGATC 59.363 44.000 0.00 0.00 0.00 3.69
2288 2436 5.546526 GGCTTCTTCTTAATCATCTCCGAT 58.453 41.667 0.00 0.00 0.00 4.18
2289 2437 4.499865 CGGCTTCTTCTTAATCATCTCCGA 60.500 45.833 0.00 0.00 34.50 4.55
2290 2438 3.738282 CGGCTTCTTCTTAATCATCTCCG 59.262 47.826 0.00 0.00 0.00 4.63
2291 2439 3.496507 GCGGCTTCTTCTTAATCATCTCC 59.503 47.826 0.00 0.00 0.00 3.71
2292 2440 3.496507 GGCGGCTTCTTCTTAATCATCTC 59.503 47.826 0.00 0.00 0.00 2.75
2293 2441 3.118261 TGGCGGCTTCTTCTTAATCATCT 60.118 43.478 11.43 0.00 0.00 2.90
2294 2442 3.002759 GTGGCGGCTTCTTCTTAATCATC 59.997 47.826 11.43 0.00 0.00 2.92
2295 2443 2.945668 GTGGCGGCTTCTTCTTAATCAT 59.054 45.455 11.43 0.00 0.00 2.45
2296 2444 2.290008 TGTGGCGGCTTCTTCTTAATCA 60.290 45.455 11.43 0.00 0.00 2.57
2297 2445 2.096013 GTGTGGCGGCTTCTTCTTAATC 59.904 50.000 11.43 0.00 0.00 1.75
2298 2446 2.084546 GTGTGGCGGCTTCTTCTTAAT 58.915 47.619 11.43 0.00 0.00 1.40
2299 2447 1.202710 TGTGTGGCGGCTTCTTCTTAA 60.203 47.619 11.43 0.00 0.00 1.85
2300 2448 0.394938 TGTGTGGCGGCTTCTTCTTA 59.605 50.000 11.43 0.00 0.00 2.10
2301 2449 0.465460 TTGTGTGGCGGCTTCTTCTT 60.465 50.000 11.43 0.00 0.00 2.52
2302 2450 0.465460 TTTGTGTGGCGGCTTCTTCT 60.465 50.000 11.43 0.00 0.00 2.85
2303 2451 0.040067 CTTTGTGTGGCGGCTTCTTC 60.040 55.000 11.43 2.72 0.00 2.87
2304 2452 0.465460 TCTTTGTGTGGCGGCTTCTT 60.465 50.000 11.43 0.00 0.00 2.52
2305 2453 0.250901 ATCTTTGTGTGGCGGCTTCT 60.251 50.000 11.43 0.00 0.00 2.85
2306 2454 0.169009 GATCTTTGTGTGGCGGCTTC 59.831 55.000 11.43 4.06 0.00 3.86
2307 2455 0.250901 AGATCTTTGTGTGGCGGCTT 60.251 50.000 11.43 0.00 0.00 4.35
2308 2456 0.250901 AAGATCTTTGTGTGGCGGCT 60.251 50.000 11.43 0.00 0.00 5.52
2309 2457 1.448985 TAAGATCTTTGTGTGGCGGC 58.551 50.000 14.36 0.00 0.00 6.53
2310 2458 3.941483 AGATTAAGATCTTTGTGTGGCGG 59.059 43.478 14.36 0.00 39.63 6.13
2321 2469 8.116026 TGCCCTTTCCTTTAAAGATTAAGATCT 58.884 33.333 16.98 0.00 46.44 2.75
2322 2470 8.191446 GTGCCCTTTCCTTTAAAGATTAAGATC 58.809 37.037 16.98 10.65 46.44 2.75
2323 2471 7.895962 AGTGCCCTTTCCTTTAAAGATTAAGAT 59.104 33.333 16.98 0.61 46.44 2.40
2324 2472 7.238710 AGTGCCCTTTCCTTTAAAGATTAAGA 58.761 34.615 16.98 2.02 46.44 2.10
2325 2473 7.468141 AGTGCCCTTTCCTTTAAAGATTAAG 57.532 36.000 16.98 14.43 46.44 1.85
2326 2474 7.849322 AAGTGCCCTTTCCTTTAAAGATTAA 57.151 32.000 16.98 5.31 46.44 1.40
2327 2475 7.849322 AAAGTGCCCTTTCCTTTAAAGATTA 57.151 32.000 16.98 0.00 46.44 1.75
2328 2476 6.747414 AAAGTGCCCTTTCCTTTAAAGATT 57.253 33.333 16.98 0.00 46.44 2.40
2340 2488 2.170397 CCTTTTGTGGAAAGTGCCCTTT 59.830 45.455 0.00 0.00 42.63 3.11
2341 2489 1.762370 CCTTTTGTGGAAAGTGCCCTT 59.238 47.619 0.00 0.00 42.63 3.95
2342 2490 1.413118 CCTTTTGTGGAAAGTGCCCT 58.587 50.000 0.00 0.00 42.63 5.19
2343 2491 0.249868 GCCTTTTGTGGAAAGTGCCC 60.250 55.000 0.00 0.00 42.63 5.36
2344 2492 0.597377 CGCCTTTTGTGGAAAGTGCC 60.597 55.000 0.00 0.00 42.63 5.01
2345 2493 0.102300 ACGCCTTTTGTGGAAAGTGC 59.898 50.000 0.00 0.00 42.63 4.40
2346 2494 1.838913 CACGCCTTTTGTGGAAAGTG 58.161 50.000 0.00 0.00 42.63 3.16
2353 2501 0.039256 CATGGACCACGCCTTTTGTG 60.039 55.000 0.00 0.00 37.09 3.33
2354 2502 1.805428 GCATGGACCACGCCTTTTGT 61.805 55.000 0.00 0.00 0.00 2.83
2355 2503 1.080569 GCATGGACCACGCCTTTTG 60.081 57.895 0.00 0.00 0.00 2.44
2356 2504 2.625823 CGCATGGACCACGCCTTTT 61.626 57.895 7.01 0.00 0.00 2.27
2357 2505 3.055719 CGCATGGACCACGCCTTT 61.056 61.111 7.01 0.00 0.00 3.11
2362 2510 4.082523 ACTCCCGCATGGACCACG 62.083 66.667 0.00 0.00 38.61 4.94
2363 2511 2.125106 GACTCCCGCATGGACCAC 60.125 66.667 0.00 0.00 38.61 4.16
2364 2512 3.770040 CGACTCCCGCATGGACCA 61.770 66.667 0.00 0.00 38.61 4.02
2365 2513 4.530857 CCGACTCCCGCATGGACC 62.531 72.222 0.00 0.00 38.61 4.46
2375 2523 3.807631 TATGCCATGCGCCGACTCC 62.808 63.158 4.18 0.00 36.24 3.85
2376 2524 2.280119 TATGCCATGCGCCGACTC 60.280 61.111 4.18 0.00 36.24 3.36
2377 2525 2.280389 CTATGCCATGCGCCGACT 60.280 61.111 4.18 0.00 36.24 4.18
2378 2526 2.280119 TCTATGCCATGCGCCGAC 60.280 61.111 4.18 0.00 36.24 4.79
2379 2527 2.029518 CTCTATGCCATGCGCCGA 59.970 61.111 4.18 0.00 36.24 5.54
2380 2528 3.046087 CCTCTATGCCATGCGCCG 61.046 66.667 4.18 0.00 36.24 6.46
2381 2529 2.670934 CCCTCTATGCCATGCGCC 60.671 66.667 4.18 0.00 36.24 6.53
2382 2530 2.111878 ACCCTCTATGCCATGCGC 59.888 61.111 0.00 0.00 38.31 6.09
2383 2531 1.598962 CCACCCTCTATGCCATGCG 60.599 63.158 0.00 0.00 0.00 4.73
2384 2532 1.228367 CCCACCCTCTATGCCATGC 60.228 63.158 0.00 0.00 0.00 4.06
2385 2533 1.434188 TACCCACCCTCTATGCCATG 58.566 55.000 0.00 0.00 0.00 3.66
2386 2534 1.988107 CATACCCACCCTCTATGCCAT 59.012 52.381 0.00 0.00 0.00 4.40
2387 2535 1.434188 CATACCCACCCTCTATGCCA 58.566 55.000 0.00 0.00 0.00 4.92
2388 2536 0.036875 GCATACCCACCCTCTATGCC 59.963 60.000 0.00 0.00 37.75 4.40
2389 2537 0.036875 GGCATACCCACCCTCTATGC 59.963 60.000 0.00 0.00 41.34 3.14
2390 2538 0.321671 CGGCATACCCACCCTCTATG 59.678 60.000 0.00 0.00 0.00 2.23
2391 2539 0.836400 CCGGCATACCCACCCTCTAT 60.836 60.000 0.00 0.00 0.00 1.98
2392 2540 1.458777 CCGGCATACCCACCCTCTA 60.459 63.158 0.00 0.00 0.00 2.43
2393 2541 2.768344 CCGGCATACCCACCCTCT 60.768 66.667 0.00 0.00 0.00 3.69
2394 2542 3.873812 CCCGGCATACCCACCCTC 61.874 72.222 0.00 0.00 0.00 4.30
2406 2554 2.747855 CTTCTCTGTTGCCCCGGC 60.748 66.667 0.00 0.00 42.35 6.13
2407 2555 1.078848 CTCTTCTCTGTTGCCCCGG 60.079 63.158 0.00 0.00 0.00 5.73
2408 2556 1.743252 GCTCTTCTCTGTTGCCCCG 60.743 63.158 0.00 0.00 0.00 5.73
2409 2557 1.377856 GGCTCTTCTCTGTTGCCCC 60.378 63.158 0.00 0.00 37.81 5.80
2410 2558 4.310288 GGCTCTTCTCTGTTGCCC 57.690 61.111 0.00 0.00 37.81 5.36
2411 2559 0.250901 TTGGGCTCTTCTCTGTTGCC 60.251 55.000 0.00 0.00 42.56 4.52
2412 2560 1.268079 GTTTGGGCTCTTCTCTGTTGC 59.732 52.381 0.00 0.00 0.00 4.17
2413 2561 2.551459 CTGTTTGGGCTCTTCTCTGTTG 59.449 50.000 0.00 0.00 0.00 3.33
2414 2562 2.487986 CCTGTTTGGGCTCTTCTCTGTT 60.488 50.000 0.00 0.00 0.00 3.16
2415 2563 1.072965 CCTGTTTGGGCTCTTCTCTGT 59.927 52.381 0.00 0.00 0.00 3.41
2416 2564 1.818642 CCTGTTTGGGCTCTTCTCTG 58.181 55.000 0.00 0.00 0.00 3.35
2427 2575 2.736531 GCACTTGGCCCTGTTTGG 59.263 61.111 0.00 0.00 36.11 3.28
2436 2584 1.260561 CGTCGTATATTGGCACTTGGC 59.739 52.381 0.00 0.00 43.74 4.52
2437 2585 1.260561 GCGTCGTATATTGGCACTTGG 59.739 52.381 0.00 0.00 0.00 3.61
2438 2586 1.930503 TGCGTCGTATATTGGCACTTG 59.069 47.619 0.00 0.00 0.00 3.16
2439 2587 2.303163 TGCGTCGTATATTGGCACTT 57.697 45.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.