Multiple sequence alignment - TraesCS7A01G343300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G343300 chr7A 100.000 3239 0 0 1 3239 503860945 503857707 0.000000e+00 5982.0
1 TraesCS7A01G343300 chr7A 93.464 306 19 1 1 305 124700867 124700562 1.370000e-123 453.0
2 TraesCS7A01G343300 chr7A 93.729 303 18 1 1 302 548308351 548308049 1.370000e-123 453.0
3 TraesCS7A01G343300 chr3A 95.128 2155 89 11 1091 3239 476533775 476531631 0.000000e+00 3384.0
4 TraesCS7A01G343300 chr3A 88.788 553 58 3 2186 2735 587896038 587896589 0.000000e+00 675.0
5 TraesCS7A01G343300 chr3A 88.427 553 60 3 2186 2735 535499041 535498490 0.000000e+00 664.0
6 TraesCS7A01G343300 chr3A 81.564 716 96 19 2173 2882 107571813 107571128 2.820000e-155 558.0
7 TraesCS7A01G343300 chr3A 90.609 394 28 4 703 1096 476561098 476560714 6.200000e-142 514.0
8 TraesCS7A01G343300 chr3A 86.486 481 31 13 1171 1621 706831569 706832045 6.240000e-137 497.0
9 TraesCS7A01G343300 chr3A 93.421 304 19 1 1 303 240291542 240291845 1.770000e-122 449.0
10 TraesCS7A01G343300 chr3A 91.250 240 20 1 468 706 476563028 476562789 3.120000e-85 326.0
11 TraesCS7A01G343300 chr3A 91.189 227 20 0 1624 1850 706832182 706832408 3.140000e-80 309.0
12 TraesCS7A01G343300 chr3A 86.624 157 21 0 2776 2932 535498486 535498330 1.190000e-39 174.0
13 TraesCS7A01G343300 chr3A 86.624 157 21 0 2776 2932 587896593 587896749 1.190000e-39 174.0
14 TraesCS7A01G343300 chr3A 90.756 119 11 0 1281 1399 535499176 535499058 3.340000e-35 159.0
15 TraesCS7A01G343300 chr3A 90.756 119 11 0 1281 1399 587895903 587896021 3.340000e-35 159.0
16 TraesCS7A01G343300 chr3A 90.909 55 5 0 302 356 644920311 644920365 1.250000e-09 75.0
17 TraesCS7A01G343300 chr3D 96.094 2048 56 13 1201 3239 128433468 128435500 0.000000e+00 3317.0
18 TraesCS7A01G343300 chr3D 88.221 815 47 9 301 1108 128432387 128433159 0.000000e+00 928.0
19 TraesCS7A01G343300 chr3D 83.310 701 88 16 2182 2877 91635525 91634849 1.280000e-173 619.0
20 TraesCS7A01G343300 chr3D 84.735 321 46 3 2667 2985 85767782 85768101 5.210000e-83 318.0
21 TraesCS7A01G343300 chr3D 84.713 314 40 6 2163 2470 85767470 85767781 1.130000e-79 307.0
22 TraesCS7A01G343300 chr3D 88.571 70 6 2 287 356 308786105 308786038 2.070000e-12 84.2
23 TraesCS7A01G343300 chr3D 83.607 61 8 1 479 537 459310004 459310064 4.510000e-04 56.5
24 TraesCS7A01G343300 chr1D 84.037 971 102 21 689 1621 170906010 170906965 0.000000e+00 885.0
25 TraesCS7A01G343300 chr1D 93.421 304 19 1 1 303 100791548 100791245 1.770000e-122 449.0
26 TraesCS7A01G343300 chr1D 93.220 59 3 1 298 356 50714751 50714808 5.760000e-13 86.1
27 TraesCS7A01G343300 chr5A 88.788 553 58 3 2186 2735 18866179 18865628 0.000000e+00 675.0
28 TraesCS7A01G343300 chr5A 88.321 137 16 0 2795 2931 18865606 18865470 7.190000e-37 165.0
29 TraesCS7A01G343300 chr5A 90.756 119 11 0 1281 1399 18866317 18866199 3.340000e-35 159.0
30 TraesCS7A01G343300 chr5D 93.421 304 19 1 1 303 123514826 123515129 1.770000e-122 449.0
31 TraesCS7A01G343300 chr5D 93.421 304 19 1 1 303 500486914 500486611 1.770000e-122 449.0
32 TraesCS7A01G343300 chr5D 93.137 306 20 1 1 305 420361708 420361403 6.370000e-122 448.0
33 TraesCS7A01G343300 chr5D 87.925 265 22 2 2976 3239 491270075 491269820 1.460000e-78 303.0
34 TraesCS7A01G343300 chr4D 93.399 303 19 1 1 302 301662660 301662962 6.370000e-122 448.0
35 TraesCS7A01G343300 chr4D 93.069 303 20 1 1 303 298212882 298213183 2.970000e-120 442.0
36 TraesCS7A01G343300 chr4D 88.235 51 4 1 489 537 475138633 475138683 3.490000e-05 60.2
37 TraesCS7A01G343300 chr4D 83.607 61 8 1 479 537 462624579 462624639 4.510000e-04 56.5
38 TraesCS7A01G343300 chr4D 96.774 31 1 0 507 537 461224784 461224814 6.000000e-03 52.8
39 TraesCS7A01G343300 chr3B 90.566 265 23 2 2976 3239 762115507 762115770 1.850000e-92 350.0
40 TraesCS7A01G343300 chr3B 94.444 108 6 0 2824 2931 72163100 72162993 2.000000e-37 167.0
41 TraesCS7A01G343300 chr6B 90.189 265 24 2 2976 3239 4272889 4272626 8.600000e-91 344.0
42 TraesCS7A01G343300 chr2D 96.364 55 2 0 302 356 507458136 507458082 1.240000e-14 91.6
43 TraesCS7A01G343300 chr2D 92.727 55 4 0 302 356 645744297 645744351 2.680000e-11 80.5
44 TraesCS7A01G343300 chr6D 84.615 91 11 3 302 390 39494497 39494586 1.600000e-13 87.9
45 TraesCS7A01G343300 chr2B 82.955 88 12 2 305 390 486557961 486557875 3.470000e-10 76.8
46 TraesCS7A01G343300 chr2B 81.707 82 10 4 302 378 339117263 339117344 2.700000e-06 63.9
47 TraesCS7A01G343300 chr6A 87.931 58 4 2 302 356 371239579 371239522 7.500000e-07 65.8
48 TraesCS7A01G343300 chr5B 100.000 28 0 0 510 537 43804313 43804286 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G343300 chr7A 503857707 503860945 3238 True 5982.000000 5982 100.000000 1 3239 1 chr7A.!!$R2 3238
1 TraesCS7A01G343300 chr3A 476531631 476533775 2144 True 3384.000000 3384 95.128000 1091 3239 1 chr3A.!!$R2 2148
2 TraesCS7A01G343300 chr3A 107571128 107571813 685 True 558.000000 558 81.564000 2173 2882 1 chr3A.!!$R1 709
3 TraesCS7A01G343300 chr3A 476560714 476563028 2314 True 420.000000 514 90.929500 468 1096 2 chr3A.!!$R3 628
4 TraesCS7A01G343300 chr3A 706831569 706832408 839 False 403.000000 497 88.837500 1171 1850 2 chr3A.!!$F4 679
5 TraesCS7A01G343300 chr3A 587895903 587896749 846 False 336.000000 675 88.722667 1281 2932 3 chr3A.!!$F3 1651
6 TraesCS7A01G343300 chr3A 535498330 535499176 846 True 332.333333 664 88.602333 1281 2932 3 chr3A.!!$R4 1651
7 TraesCS7A01G343300 chr3D 128432387 128435500 3113 False 2122.500000 3317 92.157500 301 3239 2 chr3D.!!$F3 2938
8 TraesCS7A01G343300 chr3D 91634849 91635525 676 True 619.000000 619 83.310000 2182 2877 1 chr3D.!!$R1 695
9 TraesCS7A01G343300 chr3D 85767470 85768101 631 False 312.500000 318 84.724000 2163 2985 2 chr3D.!!$F2 822
10 TraesCS7A01G343300 chr1D 170906010 170906965 955 False 885.000000 885 84.037000 689 1621 1 chr1D.!!$F2 932
11 TraesCS7A01G343300 chr5A 18865470 18866317 847 True 333.000000 675 89.288333 1281 2931 3 chr5A.!!$R1 1650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 2645 0.030773 GCTCTATCGTCGCATCACCA 59.969 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 4446 1.177895 TTGATTGCAAGCAAGGCGGA 61.178 50.0 25.24 2.99 39.47 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.666234 TAGTTGCGTGTGCGATGCA 60.666 52.632 0.00 0.00 45.27 3.96
21 22 3.725459 TGCGTGTGCGATGCAAGG 61.725 61.111 0.00 0.00 43.93 3.61
23 24 3.725459 CGTGTGCGATGCAAGGCA 61.725 61.111 10.61 10.61 41.47 4.75
36 37 4.981806 TGCAAGGCATATGGTTTAGTTC 57.018 40.909 4.56 0.00 31.71 3.01
37 38 4.339748 TGCAAGGCATATGGTTTAGTTCA 58.660 39.130 4.56 0.00 31.71 3.18
38 39 4.769488 TGCAAGGCATATGGTTTAGTTCAA 59.231 37.500 4.56 0.00 31.71 2.69
39 40 5.421693 TGCAAGGCATATGGTTTAGTTCAAT 59.578 36.000 4.56 0.00 31.71 2.57
40 41 6.070881 TGCAAGGCATATGGTTTAGTTCAATT 60.071 34.615 4.56 0.00 31.71 2.32
41 42 7.123397 TGCAAGGCATATGGTTTAGTTCAATTA 59.877 33.333 4.56 0.00 31.71 1.40
42 43 7.978975 GCAAGGCATATGGTTTAGTTCAATTAA 59.021 33.333 4.56 0.00 0.00 1.40
43 44 9.301153 CAAGGCATATGGTTTAGTTCAATTAAC 57.699 33.333 4.56 0.00 38.46 2.01
56 57 7.653767 AGTTCAATTAACTGTTTAGGACGAG 57.346 36.000 0.00 0.00 46.90 4.18
57 58 7.439381 AGTTCAATTAACTGTTTAGGACGAGA 58.561 34.615 0.00 0.00 46.90 4.04
58 59 7.929785 AGTTCAATTAACTGTTTAGGACGAGAA 59.070 33.333 0.00 0.00 46.90 2.87
59 60 7.884816 TCAATTAACTGTTTAGGACGAGAAG 57.115 36.000 0.00 0.00 0.00 2.85
60 61 6.872020 TCAATTAACTGTTTAGGACGAGAAGG 59.128 38.462 0.00 0.00 0.00 3.46
61 62 6.600882 ATTAACTGTTTAGGACGAGAAGGA 57.399 37.500 0.00 0.00 0.00 3.36
62 63 4.950205 AACTGTTTAGGACGAGAAGGAA 57.050 40.909 0.00 0.00 0.00 3.36
63 64 4.254402 ACTGTTTAGGACGAGAAGGAAC 57.746 45.455 0.00 0.00 0.00 3.62
64 65 3.640029 ACTGTTTAGGACGAGAAGGAACA 59.360 43.478 0.00 0.00 0.00 3.18
65 66 4.100498 ACTGTTTAGGACGAGAAGGAACAA 59.900 41.667 0.00 0.00 0.00 2.83
66 67 5.026038 TGTTTAGGACGAGAAGGAACAAA 57.974 39.130 0.00 0.00 0.00 2.83
67 68 5.430007 TGTTTAGGACGAGAAGGAACAAAA 58.570 37.500 0.00 0.00 0.00 2.44
68 69 5.526111 TGTTTAGGACGAGAAGGAACAAAAG 59.474 40.000 0.00 0.00 0.00 2.27
69 70 5.540400 TTAGGACGAGAAGGAACAAAAGA 57.460 39.130 0.00 0.00 0.00 2.52
70 71 4.417426 AGGACGAGAAGGAACAAAAGAA 57.583 40.909 0.00 0.00 0.00 2.52
71 72 4.777463 AGGACGAGAAGGAACAAAAGAAA 58.223 39.130 0.00 0.00 0.00 2.52
72 73 4.575236 AGGACGAGAAGGAACAAAAGAAAC 59.425 41.667 0.00 0.00 0.00 2.78
73 74 4.515432 GACGAGAAGGAACAAAAGAAACG 58.485 43.478 0.00 0.00 0.00 3.60
74 75 3.311596 ACGAGAAGGAACAAAAGAAACGG 59.688 43.478 0.00 0.00 0.00 4.44
75 76 3.558418 CGAGAAGGAACAAAAGAAACGGA 59.442 43.478 0.00 0.00 0.00 4.69
76 77 4.552184 CGAGAAGGAACAAAAGAAACGGAC 60.552 45.833 0.00 0.00 0.00 4.79
77 78 4.266714 AGAAGGAACAAAAGAAACGGACA 58.733 39.130 0.00 0.00 0.00 4.02
78 79 4.335594 AGAAGGAACAAAAGAAACGGACAG 59.664 41.667 0.00 0.00 0.00 3.51
79 80 2.357952 AGGAACAAAAGAAACGGACAGC 59.642 45.455 0.00 0.00 0.00 4.40
80 81 2.543031 GGAACAAAAGAAACGGACAGCC 60.543 50.000 0.00 0.00 0.00 4.85
81 82 1.757682 ACAAAAGAAACGGACAGCCA 58.242 45.000 0.00 0.00 0.00 4.75
82 83 1.676006 ACAAAAGAAACGGACAGCCAG 59.324 47.619 0.00 0.00 0.00 4.85
83 84 1.946768 CAAAAGAAACGGACAGCCAGA 59.053 47.619 0.00 0.00 0.00 3.86
84 85 2.554032 CAAAAGAAACGGACAGCCAGAT 59.446 45.455 0.00 0.00 0.00 2.90
85 86 1.813513 AAGAAACGGACAGCCAGATG 58.186 50.000 0.00 0.00 0.00 2.90
86 87 0.976641 AGAAACGGACAGCCAGATGA 59.023 50.000 0.00 0.00 0.00 2.92
87 88 1.347707 AGAAACGGACAGCCAGATGAA 59.652 47.619 0.00 0.00 0.00 2.57
88 89 1.734465 GAAACGGACAGCCAGATGAAG 59.266 52.381 0.00 0.00 0.00 3.02
89 90 0.036010 AACGGACAGCCAGATGAAGG 60.036 55.000 0.00 0.00 0.00 3.46
97 98 1.725665 CCAGATGAAGGCATGTGCG 59.274 57.895 0.00 0.00 42.66 5.34
98 99 0.745486 CCAGATGAAGGCATGTGCGA 60.745 55.000 0.00 0.00 42.66 5.10
99 100 1.306148 CAGATGAAGGCATGTGCGAT 58.694 50.000 0.00 0.00 38.70 4.58
100 101 2.486918 CAGATGAAGGCATGTGCGATA 58.513 47.619 0.00 0.00 38.70 2.92
101 102 3.072211 CAGATGAAGGCATGTGCGATAT 58.928 45.455 0.00 0.00 38.70 1.63
102 103 4.248058 CAGATGAAGGCATGTGCGATATA 58.752 43.478 0.00 0.00 38.70 0.86
103 104 4.874396 CAGATGAAGGCATGTGCGATATAT 59.126 41.667 0.00 0.00 38.70 0.86
104 105 6.044682 CAGATGAAGGCATGTGCGATATATA 58.955 40.000 0.00 0.00 38.70 0.86
105 106 6.200475 CAGATGAAGGCATGTGCGATATATAG 59.800 42.308 0.00 0.00 38.70 1.31
106 107 4.183865 TGAAGGCATGTGCGATATATAGC 58.816 43.478 10.58 10.58 43.26 2.97
107 108 3.893326 AGGCATGTGCGATATATAGCA 57.107 42.857 15.57 15.57 43.26 3.49
108 109 4.412796 AGGCATGTGCGATATATAGCAT 57.587 40.909 21.24 6.02 45.69 3.79
109 110 5.535753 AGGCATGTGCGATATATAGCATA 57.464 39.130 21.24 19.11 45.69 3.14
110 111 5.292765 AGGCATGTGCGATATATAGCATAC 58.707 41.667 21.24 11.49 45.69 2.39
111 112 4.148871 GGCATGTGCGATATATAGCATACG 59.851 45.833 21.24 13.66 45.69 3.06
112 113 4.148871 GCATGTGCGATATATAGCATACGG 59.851 45.833 21.24 15.43 45.69 4.02
113 114 4.976224 TGTGCGATATATAGCATACGGT 57.024 40.909 21.24 0.00 45.69 4.83
114 115 5.319140 TGTGCGATATATAGCATACGGTT 57.681 39.130 21.24 0.00 45.69 4.44
115 116 5.337554 TGTGCGATATATAGCATACGGTTC 58.662 41.667 21.24 9.00 45.69 3.62
116 117 5.106078 TGTGCGATATATAGCATACGGTTCA 60.106 40.000 21.24 11.18 45.69 3.18
117 118 5.229469 GTGCGATATATAGCATACGGTTCAC 59.771 44.000 21.24 4.13 45.69 3.18
118 119 5.124936 TGCGATATATAGCATACGGTTCACT 59.875 40.000 15.57 0.00 38.59 3.41
119 120 6.316890 TGCGATATATAGCATACGGTTCACTA 59.683 38.462 15.57 0.00 38.59 2.74
120 121 6.851837 GCGATATATAGCATACGGTTCACTAG 59.148 42.308 12.40 0.00 0.00 2.57
121 122 7.353497 CGATATATAGCATACGGTTCACTAGG 58.647 42.308 0.00 0.00 0.00 3.02
122 123 7.226128 CGATATATAGCATACGGTTCACTAGGA 59.774 40.741 0.00 0.00 0.00 2.94
123 124 8.998277 ATATATAGCATACGGTTCACTAGGAT 57.002 34.615 0.00 0.00 0.00 3.24
124 125 3.735237 AGCATACGGTTCACTAGGATG 57.265 47.619 0.00 0.00 0.00 3.51
125 126 3.296854 AGCATACGGTTCACTAGGATGA 58.703 45.455 0.00 0.00 0.00 2.92
126 127 3.704566 AGCATACGGTTCACTAGGATGAA 59.295 43.478 0.00 0.00 36.23 2.57
134 135 4.955811 TTCACTAGGATGAACTGTGTGT 57.044 40.909 0.00 0.00 33.62 3.72
135 136 4.257267 TCACTAGGATGAACTGTGTGTG 57.743 45.455 0.00 0.00 32.22 3.82
136 137 3.895041 TCACTAGGATGAACTGTGTGTGA 59.105 43.478 0.00 0.00 32.22 3.58
137 138 4.528206 TCACTAGGATGAACTGTGTGTGAT 59.472 41.667 0.00 0.00 32.22 3.06
138 139 5.012046 TCACTAGGATGAACTGTGTGTGATT 59.988 40.000 0.00 0.00 32.22 2.57
139 140 6.210584 TCACTAGGATGAACTGTGTGTGATTA 59.789 38.462 0.00 0.00 32.22 1.75
140 141 6.533012 CACTAGGATGAACTGTGTGTGATTAG 59.467 42.308 0.00 0.00 0.00 1.73
141 142 5.745312 AGGATGAACTGTGTGTGATTAGA 57.255 39.130 0.00 0.00 0.00 2.10
142 143 5.482908 AGGATGAACTGTGTGTGATTAGAC 58.517 41.667 0.00 0.00 0.00 2.59
143 144 5.012046 AGGATGAACTGTGTGTGATTAGACA 59.988 40.000 0.00 0.00 0.00 3.41
144 145 5.700832 GGATGAACTGTGTGTGATTAGACAA 59.299 40.000 0.00 0.00 31.23 3.18
145 146 5.984233 TGAACTGTGTGTGATTAGACAAC 57.016 39.130 0.00 0.00 31.23 3.32
146 147 5.423886 TGAACTGTGTGTGATTAGACAACA 58.576 37.500 0.00 0.00 31.23 3.33
147 148 5.293324 TGAACTGTGTGTGATTAGACAACAC 59.707 40.000 0.00 0.00 31.23 3.32
148 149 4.765273 ACTGTGTGTGATTAGACAACACA 58.235 39.130 3.86 3.86 41.27 3.72
149 150 5.182487 ACTGTGTGTGATTAGACAACACAA 58.818 37.500 9.24 1.10 44.21 3.33
150 151 5.822519 ACTGTGTGTGATTAGACAACACAAT 59.177 36.000 9.24 0.00 44.21 2.71
151 152 6.058827 TGTGTGTGATTAGACAACACAATG 57.941 37.500 9.24 0.00 44.21 2.82
152 153 5.819901 TGTGTGTGATTAGACAACACAATGA 59.180 36.000 9.24 0.00 44.21 2.57
153 154 6.317391 TGTGTGTGATTAGACAACACAATGAA 59.683 34.615 9.24 0.00 44.21 2.57
154 155 7.148171 TGTGTGTGATTAGACAACACAATGAAA 60.148 33.333 9.24 0.00 44.21 2.69
155 156 7.700234 GTGTGTGATTAGACAACACAATGAAAA 59.300 33.333 9.24 0.00 44.21 2.29
156 157 8.412456 TGTGTGATTAGACAACACAATGAAAAT 58.588 29.630 5.45 0.00 44.21 1.82
157 158 8.693504 GTGTGATTAGACAACACAATGAAAATG 58.306 33.333 0.00 0.00 44.21 2.32
158 159 7.866898 TGTGATTAGACAACACAATGAAAATGG 59.133 33.333 0.00 0.00 40.72 3.16
159 160 7.867403 GTGATTAGACAACACAATGAAAATGGT 59.133 33.333 0.00 0.00 35.06 3.55
160 161 8.420222 TGATTAGACAACACAATGAAAATGGTT 58.580 29.630 0.00 0.00 0.00 3.67
161 162 9.260002 GATTAGACAACACAATGAAAATGGTTT 57.740 29.630 0.00 0.00 0.00 3.27
164 165 8.419076 AGACAACACAATGAAAATGGTTTAAC 57.581 30.769 0.00 0.00 0.00 2.01
165 166 8.257306 AGACAACACAATGAAAATGGTTTAACT 58.743 29.630 0.00 0.00 0.00 2.24
166 167 8.195617 ACAACACAATGAAAATGGTTTAACTG 57.804 30.769 0.00 0.00 0.00 3.16
167 168 8.037758 ACAACACAATGAAAATGGTTTAACTGA 58.962 29.630 0.00 0.00 0.00 3.41
168 169 8.877779 CAACACAATGAAAATGGTTTAACTGAA 58.122 29.630 0.00 0.00 0.00 3.02
169 170 8.419076 ACACAATGAAAATGGTTTAACTGAAC 57.581 30.769 0.00 0.00 0.00 3.18
170 171 8.037758 ACACAATGAAAATGGTTTAACTGAACA 58.962 29.630 0.00 0.00 0.00 3.18
171 172 8.877779 CACAATGAAAATGGTTTAACTGAACAA 58.122 29.630 0.00 0.00 0.00 2.83
172 173 9.097257 ACAATGAAAATGGTTTAACTGAACAAG 57.903 29.630 0.00 0.00 0.00 3.16
173 174 9.311916 CAATGAAAATGGTTTAACTGAACAAGA 57.688 29.630 0.00 0.00 0.00 3.02
175 176 8.870160 TGAAAATGGTTTAACTGAACAAGATG 57.130 30.769 0.00 0.00 0.00 2.90
176 177 8.474025 TGAAAATGGTTTAACTGAACAAGATGT 58.526 29.630 0.00 0.00 0.00 3.06
177 178 8.647143 AAAATGGTTTAACTGAACAAGATGTG 57.353 30.769 0.00 0.00 0.00 3.21
178 179 6.959639 ATGGTTTAACTGAACAAGATGTGT 57.040 33.333 0.00 0.00 44.64 3.72
179 180 6.130298 TGGTTTAACTGAACAAGATGTGTG 57.870 37.500 0.00 0.00 40.60 3.82
180 181 5.650266 TGGTTTAACTGAACAAGATGTGTGT 59.350 36.000 0.00 0.00 40.60 3.72
181 182 5.971202 GGTTTAACTGAACAAGATGTGTGTG 59.029 40.000 0.00 0.00 40.60 3.82
182 183 6.183360 GGTTTAACTGAACAAGATGTGTGTGA 60.183 38.462 0.00 0.00 40.60 3.58
183 184 7.417612 GTTTAACTGAACAAGATGTGTGTGAT 58.582 34.615 0.00 0.00 40.60 3.06
184 185 8.556194 GTTTAACTGAACAAGATGTGTGTGATA 58.444 33.333 0.00 0.00 40.60 2.15
185 186 6.545504 AACTGAACAAGATGTGTGTGATAC 57.454 37.500 0.00 0.00 40.60 2.24
186 187 4.686091 ACTGAACAAGATGTGTGTGATACG 59.314 41.667 0.00 0.00 40.60 3.06
187 188 3.431912 TGAACAAGATGTGTGTGATACGC 59.568 43.478 0.00 0.00 40.60 4.42
188 189 1.992667 ACAAGATGTGTGTGATACGCG 59.007 47.619 3.53 3.53 42.76 6.01
189 190 1.324435 CAAGATGTGTGTGATACGCGG 59.676 52.381 12.47 0.00 42.76 6.46
190 191 0.806102 AGATGTGTGTGATACGCGGC 60.806 55.000 12.47 0.00 42.76 6.53
191 192 1.079474 ATGTGTGTGATACGCGGCA 60.079 52.632 12.47 2.17 42.76 5.69
192 193 0.672091 ATGTGTGTGATACGCGGCAA 60.672 50.000 12.47 0.00 42.76 4.52
193 194 0.880718 TGTGTGTGATACGCGGCAAA 60.881 50.000 12.47 0.00 42.76 3.68
194 195 0.446222 GTGTGTGATACGCGGCAAAT 59.554 50.000 12.47 0.00 0.00 2.32
195 196 1.661617 GTGTGTGATACGCGGCAAATA 59.338 47.619 12.47 0.00 0.00 1.40
196 197 1.930503 TGTGTGATACGCGGCAAATAG 59.069 47.619 12.47 0.00 0.00 1.73
197 198 1.260561 GTGTGATACGCGGCAAATAGG 59.739 52.381 12.47 0.00 0.00 2.57
198 199 1.134640 TGTGATACGCGGCAAATAGGT 60.135 47.619 12.47 0.00 0.00 3.08
199 200 1.525619 GTGATACGCGGCAAATAGGTC 59.474 52.381 12.47 0.00 0.00 3.85
200 201 1.145803 GATACGCGGCAAATAGGTCC 58.854 55.000 12.47 0.00 0.00 4.46
201 202 0.599204 ATACGCGGCAAATAGGTCCG 60.599 55.000 12.47 0.00 45.46 4.79
202 203 1.947597 TACGCGGCAAATAGGTCCGT 61.948 55.000 12.47 0.00 44.58 4.69
203 204 1.227031 CGCGGCAAATAGGTCCGTA 60.227 57.895 0.00 0.00 44.58 4.02
204 205 0.806884 CGCGGCAAATAGGTCCGTAA 60.807 55.000 0.00 0.00 44.58 3.18
205 206 1.589803 GCGGCAAATAGGTCCGTAAT 58.410 50.000 0.00 0.00 44.58 1.89
206 207 1.944709 GCGGCAAATAGGTCCGTAATT 59.055 47.619 0.00 0.00 44.58 1.40
207 208 3.132925 GCGGCAAATAGGTCCGTAATTA 58.867 45.455 0.00 0.00 44.58 1.40
208 209 3.185797 GCGGCAAATAGGTCCGTAATTAG 59.814 47.826 0.00 0.00 44.58 1.73
209 210 4.624015 CGGCAAATAGGTCCGTAATTAGA 58.376 43.478 0.00 0.00 38.47 2.10
210 211 5.051816 CGGCAAATAGGTCCGTAATTAGAA 58.948 41.667 0.00 0.00 38.47 2.10
211 212 5.524646 CGGCAAATAGGTCCGTAATTAGAAA 59.475 40.000 0.00 0.00 38.47 2.52
212 213 6.204108 CGGCAAATAGGTCCGTAATTAGAAAT 59.796 38.462 0.00 0.00 38.47 2.17
213 214 7.360361 GGCAAATAGGTCCGTAATTAGAAATG 58.640 38.462 0.00 0.00 0.00 2.32
214 215 7.012989 GGCAAATAGGTCCGTAATTAGAAATGT 59.987 37.037 0.00 0.00 0.00 2.71
215 216 7.855904 GCAAATAGGTCCGTAATTAGAAATGTG 59.144 37.037 0.00 0.00 0.00 3.21
216 217 8.889717 CAAATAGGTCCGTAATTAGAAATGTGT 58.110 33.333 0.00 0.00 0.00 3.72
218 219 9.538508 AATAGGTCCGTAATTAGAAATGTGTAC 57.461 33.333 0.00 0.00 0.00 2.90
219 220 6.038356 AGGTCCGTAATTAGAAATGTGTACG 58.962 40.000 0.00 0.00 35.34 3.67
220 221 6.035843 GGTCCGTAATTAGAAATGTGTACGA 58.964 40.000 2.83 0.00 37.18 3.43
221 222 6.531240 GGTCCGTAATTAGAAATGTGTACGAA 59.469 38.462 2.83 0.00 37.18 3.85
222 223 7.253883 GGTCCGTAATTAGAAATGTGTACGAAG 60.254 40.741 2.83 0.00 37.18 3.79
223 224 7.485913 GTCCGTAATTAGAAATGTGTACGAAGA 59.514 37.037 2.83 0.00 37.18 2.87
224 225 7.485913 TCCGTAATTAGAAATGTGTACGAAGAC 59.514 37.037 2.83 0.00 37.18 3.01
225 226 7.253883 CCGTAATTAGAAATGTGTACGAAGACC 60.254 40.741 2.83 0.00 37.18 3.85
226 227 7.274033 CGTAATTAGAAATGTGTACGAAGACCA 59.726 37.037 0.00 0.00 37.18 4.02
227 228 7.972832 AATTAGAAATGTGTACGAAGACCAA 57.027 32.000 0.00 0.00 0.00 3.67
228 229 8.561738 AATTAGAAATGTGTACGAAGACCAAT 57.438 30.769 0.00 0.00 0.00 3.16
229 230 9.661563 AATTAGAAATGTGTACGAAGACCAATA 57.338 29.630 0.00 0.00 0.00 1.90
230 231 9.661563 ATTAGAAATGTGTACGAAGACCAATAA 57.338 29.630 0.00 0.00 0.00 1.40
231 232 9.661563 TTAGAAATGTGTACGAAGACCAATAAT 57.338 29.630 0.00 0.00 0.00 1.28
233 234 9.661563 AGAAATGTGTACGAAGACCAATAATAA 57.338 29.630 0.00 0.00 0.00 1.40
234 235 9.698617 GAAATGTGTACGAAGACCAATAATAAC 57.301 33.333 0.00 0.00 0.00 1.89
235 236 8.780846 AATGTGTACGAAGACCAATAATAACA 57.219 30.769 0.00 0.00 0.00 2.41
236 237 7.585286 TGTGTACGAAGACCAATAATAACAC 57.415 36.000 0.00 0.00 35.31 3.32
237 238 7.153315 TGTGTACGAAGACCAATAATAACACA 58.847 34.615 0.00 0.00 40.62 3.72
238 239 7.329962 TGTGTACGAAGACCAATAATAACACAG 59.670 37.037 0.00 0.00 38.71 3.66
239 240 7.543172 GTGTACGAAGACCAATAATAACACAGA 59.457 37.037 0.00 0.00 34.96 3.41
240 241 6.963049 ACGAAGACCAATAATAACACAGAC 57.037 37.500 0.00 0.00 0.00 3.51
241 242 5.575606 ACGAAGACCAATAATAACACAGACG 59.424 40.000 0.00 0.00 0.00 4.18
242 243 5.803461 CGAAGACCAATAATAACACAGACGA 59.197 40.000 0.00 0.00 0.00 4.20
243 244 6.475727 CGAAGACCAATAATAACACAGACGAT 59.524 38.462 0.00 0.00 0.00 3.73
244 245 7.010183 CGAAGACCAATAATAACACAGACGATT 59.990 37.037 0.00 0.00 0.00 3.34
245 246 7.539712 AGACCAATAATAACACAGACGATTG 57.460 36.000 0.00 0.00 0.00 2.67
246 247 6.037172 AGACCAATAATAACACAGACGATTGC 59.963 38.462 0.00 0.00 0.00 3.56
247 248 5.880332 ACCAATAATAACACAGACGATTGCT 59.120 36.000 0.00 0.00 0.00 3.91
248 249 6.183360 ACCAATAATAACACAGACGATTGCTG 60.183 38.462 0.00 0.00 39.26 4.41
249 250 3.747099 AATAACACAGACGATTGCTGC 57.253 42.857 0.00 0.00 36.86 5.25
250 251 2.455674 TAACACAGACGATTGCTGCT 57.544 45.000 0.00 0.00 36.86 4.24
251 252 2.455674 AACACAGACGATTGCTGCTA 57.544 45.000 0.00 0.00 36.86 3.49
252 253 2.455674 ACACAGACGATTGCTGCTAA 57.544 45.000 0.00 0.00 36.86 3.09
253 254 2.977914 ACACAGACGATTGCTGCTAAT 58.022 42.857 0.00 0.00 36.86 1.73
254 255 4.123497 ACACAGACGATTGCTGCTAATA 57.877 40.909 0.00 0.00 36.86 0.98
255 256 4.503910 ACACAGACGATTGCTGCTAATAA 58.496 39.130 0.00 0.00 36.86 1.40
256 257 4.568359 ACACAGACGATTGCTGCTAATAAG 59.432 41.667 0.00 0.84 36.86 1.73
270 271 5.986004 GCTAATAAGCCGTGTGATTTACT 57.014 39.130 0.00 0.00 43.40 2.24
271 272 5.975442 GCTAATAAGCCGTGTGATTTACTC 58.025 41.667 0.00 0.00 43.40 2.59
272 273 5.753921 GCTAATAAGCCGTGTGATTTACTCT 59.246 40.000 0.00 0.00 43.40 3.24
273 274 6.292381 GCTAATAAGCCGTGTGATTTACTCTG 60.292 42.308 0.00 0.00 43.40 3.35
274 275 3.402628 AAGCCGTGTGATTTACTCTGT 57.597 42.857 0.00 0.00 0.00 3.41
275 276 2.960819 AGCCGTGTGATTTACTCTGTC 58.039 47.619 0.00 0.00 0.00 3.51
276 277 2.563179 AGCCGTGTGATTTACTCTGTCT 59.437 45.455 0.00 0.00 0.00 3.41
277 278 3.762288 AGCCGTGTGATTTACTCTGTCTA 59.238 43.478 0.00 0.00 0.00 2.59
278 279 4.402793 AGCCGTGTGATTTACTCTGTCTAT 59.597 41.667 0.00 0.00 0.00 1.98
279 280 5.593095 AGCCGTGTGATTTACTCTGTCTATA 59.407 40.000 0.00 0.00 0.00 1.31
280 281 5.915758 GCCGTGTGATTTACTCTGTCTATAG 59.084 44.000 0.00 0.00 0.00 1.31
281 282 6.459848 GCCGTGTGATTTACTCTGTCTATAGT 60.460 42.308 0.00 0.00 0.00 2.12
282 283 7.255035 GCCGTGTGATTTACTCTGTCTATAGTA 60.255 40.741 0.00 0.00 0.00 1.82
283 284 8.283992 CCGTGTGATTTACTCTGTCTATAGTAG 58.716 40.741 0.00 0.41 30.27 2.57
284 285 9.043079 CGTGTGATTTACTCTGTCTATAGTAGA 57.957 37.037 0.00 4.73 30.27 2.59
340 341 3.766691 TTGGTAGTCTCCGCCGGC 61.767 66.667 19.07 19.07 0.00 6.13
356 357 0.372334 CGGCTAAATTTCGTCCCACG 59.628 55.000 0.00 0.00 44.19 4.94
361 362 4.992951 GGCTAAATTTCGTCCCACGTATAT 59.007 41.667 0.00 0.00 43.14 0.86
365 366 0.953727 TTCGTCCCACGTATATCGGG 59.046 55.000 1.41 1.41 43.14 5.14
387 388 2.762535 TTTTCGTCCTCACTCCCATC 57.237 50.000 0.00 0.00 0.00 3.51
392 393 1.859302 GTCCTCACTCCCATCTCACT 58.141 55.000 0.00 0.00 0.00 3.41
393 394 1.480137 GTCCTCACTCCCATCTCACTG 59.520 57.143 0.00 0.00 0.00 3.66
402 403 1.079612 CATCTCACTGTGAGCCGCA 60.080 57.895 28.56 14.83 43.95 5.69
403 404 0.461516 CATCTCACTGTGAGCCGCAT 60.462 55.000 28.56 16.29 43.95 4.73
404 405 0.179089 ATCTCACTGTGAGCCGCATC 60.179 55.000 28.56 0.00 43.95 3.91
405 406 1.079612 CTCACTGTGAGCCGCATCA 60.080 57.895 23.43 0.00 37.72 3.07
406 407 0.671472 CTCACTGTGAGCCGCATCAA 60.671 55.000 23.43 0.00 37.72 2.57
409 410 0.036105 ACTGTGAGCCGCATCAATCA 60.036 50.000 0.00 0.00 0.00 2.57
426 427 7.387397 GCATCAATCAAACCAATAAAAACCTCA 59.613 33.333 0.00 0.00 0.00 3.86
447 448 2.951745 CGATCCTCGCACGCAGTC 60.952 66.667 0.00 0.00 41.61 3.51
448 449 2.583593 GATCCTCGCACGCAGTCC 60.584 66.667 0.00 0.00 41.61 3.85
449 450 3.356639 GATCCTCGCACGCAGTCCA 62.357 63.158 0.00 0.00 41.61 4.02
450 451 3.362399 ATCCTCGCACGCAGTCCAG 62.362 63.158 0.00 0.00 41.61 3.86
454 455 4.988598 CGCACGCAGTCCAGGGTT 62.989 66.667 0.00 0.00 41.61 4.11
455 456 2.345991 GCACGCAGTCCAGGGTTA 59.654 61.111 0.00 0.00 41.61 2.85
456 457 1.302192 GCACGCAGTCCAGGGTTAA 60.302 57.895 0.00 0.00 41.61 2.01
457 458 1.574702 GCACGCAGTCCAGGGTTAAC 61.575 60.000 0.00 0.00 41.61 2.01
458 459 0.953960 CACGCAGTCCAGGGTTAACC 60.954 60.000 16.85 16.85 41.61 2.85
460 461 3.048972 ACGCAGTCCAGGGTTAACCTC 62.049 57.143 23.69 13.88 42.93 3.85
504 505 1.164041 CCGTCGCACCCAAGAAAAGT 61.164 55.000 0.00 0.00 0.00 2.66
565 568 1.901085 GACTCCCTCGACATGCCTT 59.099 57.895 0.00 0.00 0.00 4.35
602 605 2.202623 GTTCGCTCGGACGCAGAT 60.203 61.111 0.00 0.00 0.00 2.90
636 639 2.573462 CTCCCACATCCTCCTCTTTTCA 59.427 50.000 0.00 0.00 0.00 2.69
730 2428 2.185867 GGCTCCATCGCCGTACAA 59.814 61.111 0.00 0.00 40.79 2.41
732 2430 2.171725 GCTCCATCGCCGTACAACC 61.172 63.158 0.00 0.00 0.00 3.77
792 2490 2.534396 CCAGGCCCCACAAGGTACA 61.534 63.158 0.00 0.00 0.00 2.90
874 2572 3.276846 GCCACCACGTTCGTGCTT 61.277 61.111 18.14 5.96 35.03 3.91
875 2573 1.957186 GCCACCACGTTCGTGCTTA 60.957 57.895 18.14 0.00 35.03 3.09
932 2631 4.609098 CCTCCTGGGCTCTATCGT 57.391 61.111 0.00 0.00 0.00 3.73
939 2642 1.106944 TGGGCTCTATCGTCGCATCA 61.107 55.000 0.00 0.00 0.00 3.07
942 2645 0.030773 GCTCTATCGTCGCATCACCA 59.969 55.000 0.00 0.00 0.00 4.17
994 2697 5.048782 GCTTCCACGGATTCAAATATATGCA 60.049 40.000 0.00 0.00 0.00 3.96
1109 2815 2.595463 TGCTGCAGGGTTCAGTGC 60.595 61.111 17.12 0.00 40.29 4.40
1123 2829 0.798776 CAGTGCCGTCATCTTTGTCC 59.201 55.000 0.00 0.00 0.00 4.02
1136 2842 1.019278 TTTGTCCGCATCTTCCGCTC 61.019 55.000 0.00 0.00 0.00 5.03
1166 2872 3.671410 CAACCCCTCATGCCCCCA 61.671 66.667 0.00 0.00 0.00 4.96
1167 2873 2.621449 AACCCCTCATGCCCCCAT 60.621 61.111 0.00 0.00 0.00 4.00
1168 2874 2.704424 AACCCCTCATGCCCCCATC 61.704 63.158 0.00 0.00 0.00 3.51
1175 2883 0.106066 TCATGCCCCCATCCATTCAC 60.106 55.000 0.00 0.00 0.00 3.18
1188 2896 3.655486 TCCATTCACGCTCGTTTTCTTA 58.345 40.909 0.00 0.00 0.00 2.10
1222 3145 0.468226 TCCGGATTTGGATTCCCTCG 59.532 55.000 0.00 0.00 31.53 4.63
1257 3185 9.797556 ACAATGTCAATGTTGATAGATCATTTG 57.202 29.630 0.00 0.50 39.73 2.32
1303 3234 2.820059 TCGTTATATGGCTGCAGAGG 57.180 50.000 20.43 0.00 0.00 3.69
1348 3279 2.171659 TGTGTTTGTGCTCCAGGTCTAA 59.828 45.455 0.00 0.00 0.00 2.10
1640 3736 0.811616 GCAACGAGGTATGCTCCTGG 60.812 60.000 0.00 2.79 39.46 4.45
1647 3743 3.031736 GAGGTATGCTCCTGGTCTACAA 58.968 50.000 0.00 0.00 38.02 2.41
1665 3761 7.015389 GGTCTACAATACTAATGCTCCTTACCT 59.985 40.741 0.00 0.00 0.00 3.08
1667 3763 9.650714 TCTACAATACTAATGCTCCTTACCTAA 57.349 33.333 0.00 0.00 0.00 2.69
1671 3767 7.916077 ATACTAATGCTCCTTACCTAACAGT 57.084 36.000 0.00 0.00 0.00 3.55
1688 3784 7.883311 ACCTAACAGTTGCTTGTCATTAGTTAT 59.117 33.333 0.00 0.00 0.00 1.89
1735 3831 5.429681 TGCTCCTTGTAAATTGTAGGCTA 57.570 39.130 0.00 0.00 0.00 3.93
1837 3933 8.114102 TCTCTCTGAATTCTAACCCAGTAAGTA 58.886 37.037 7.05 0.00 0.00 2.24
2018 4116 6.995511 AAGCAACATGTGGTATTACGTTAT 57.004 33.333 0.00 0.00 36.79 1.89
2304 4406 0.892755 CATGCTGGCATCAACAAGGT 59.107 50.000 4.98 0.00 33.90 3.50
2336 4446 9.220767 GATATTCAGTCTTTTACAAGGTCAACT 57.779 33.333 0.00 0.00 0.00 3.16
2419 4535 7.710907 GTGTTTCTACATGGTGAGATATAAGCA 59.289 37.037 0.00 0.00 36.50 3.91
2561 4677 5.974158 CGATAGATGTTACTGGTTCACTCAG 59.026 44.000 0.00 0.00 36.87 3.35
2742 4864 2.683968 TGACACTGAACCTAATGCGTC 58.316 47.619 0.00 0.00 0.00 5.19
3063 5227 0.918799 ATGGGTGTGGGGCTGTATGA 60.919 55.000 0.00 0.00 0.00 2.15
3073 5237 3.299503 GGGGCTGTATGAATTTGGTCAT 58.700 45.455 0.00 0.00 41.21 3.06
3087 5251 3.598693 TGGTCATGGACATTGGCATAT 57.401 42.857 0.00 0.00 33.68 1.78
3156 5320 5.177326 GTGTGAGCTGATGATCTTCTTCTT 58.823 41.667 9.75 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.224722 TTGCATCGCACACGCAACTA 61.225 50.000 0.00 0.00 40.54 2.24
1 2 2.448153 CTTGCATCGCACACGCAACT 62.448 55.000 0.00 0.00 40.54 3.16
2 3 2.051435 TTGCATCGCACACGCAAC 60.051 55.556 0.00 0.00 40.54 4.17
4 5 3.725459 CCTTGCATCGCACACGCA 61.725 61.111 0.00 0.00 38.71 5.24
6 7 3.725459 TGCCTTGCATCGCACACG 61.725 61.111 4.20 0.00 38.71 4.49
15 16 4.339748 TGAACTAAACCATATGCCTTGCA 58.660 39.130 0.00 0.00 44.86 4.08
16 17 4.981806 TGAACTAAACCATATGCCTTGC 57.018 40.909 0.00 0.00 0.00 4.01
17 18 9.301153 GTTAATTGAACTAAACCATATGCCTTG 57.699 33.333 0.00 0.00 34.96 3.61
33 34 7.647907 TCTCGTCCTAAACAGTTAATTGAAC 57.352 36.000 4.81 0.00 38.44 3.18
34 35 7.386848 CCTTCTCGTCCTAAACAGTTAATTGAA 59.613 37.037 4.81 0.00 0.00 2.69
35 36 6.872020 CCTTCTCGTCCTAAACAGTTAATTGA 59.128 38.462 4.81 0.00 0.00 2.57
36 37 6.872020 TCCTTCTCGTCCTAAACAGTTAATTG 59.128 38.462 0.00 0.00 0.00 2.32
37 38 7.001099 TCCTTCTCGTCCTAAACAGTTAATT 57.999 36.000 0.00 0.00 0.00 1.40
38 39 6.600882 TCCTTCTCGTCCTAAACAGTTAAT 57.399 37.500 0.00 0.00 0.00 1.40
39 40 6.183360 TGTTCCTTCTCGTCCTAAACAGTTAA 60.183 38.462 0.00 0.00 0.00 2.01
40 41 5.302568 TGTTCCTTCTCGTCCTAAACAGTTA 59.697 40.000 0.00 0.00 0.00 2.24
41 42 4.100498 TGTTCCTTCTCGTCCTAAACAGTT 59.900 41.667 0.00 0.00 0.00 3.16
42 43 3.640029 TGTTCCTTCTCGTCCTAAACAGT 59.360 43.478 0.00 0.00 0.00 3.55
43 44 4.252971 TGTTCCTTCTCGTCCTAAACAG 57.747 45.455 0.00 0.00 0.00 3.16
44 45 4.675976 TTGTTCCTTCTCGTCCTAAACA 57.324 40.909 0.00 0.00 0.00 2.83
45 46 5.756833 TCTTTTGTTCCTTCTCGTCCTAAAC 59.243 40.000 0.00 0.00 0.00 2.01
46 47 5.920903 TCTTTTGTTCCTTCTCGTCCTAAA 58.079 37.500 0.00 0.00 0.00 1.85
47 48 5.540400 TCTTTTGTTCCTTCTCGTCCTAA 57.460 39.130 0.00 0.00 0.00 2.69
48 49 5.540400 TTCTTTTGTTCCTTCTCGTCCTA 57.460 39.130 0.00 0.00 0.00 2.94
49 50 4.417426 TTCTTTTGTTCCTTCTCGTCCT 57.583 40.909 0.00 0.00 0.00 3.85
50 51 4.552184 CGTTTCTTTTGTTCCTTCTCGTCC 60.552 45.833 0.00 0.00 0.00 4.79
51 52 4.515432 CGTTTCTTTTGTTCCTTCTCGTC 58.485 43.478 0.00 0.00 0.00 4.20
52 53 3.311596 CCGTTTCTTTTGTTCCTTCTCGT 59.688 43.478 0.00 0.00 0.00 4.18
53 54 3.558418 TCCGTTTCTTTTGTTCCTTCTCG 59.442 43.478 0.00 0.00 0.00 4.04
54 55 4.334481 TGTCCGTTTCTTTTGTTCCTTCTC 59.666 41.667 0.00 0.00 0.00 2.87
55 56 4.266714 TGTCCGTTTCTTTTGTTCCTTCT 58.733 39.130 0.00 0.00 0.00 2.85
56 57 4.598062 CTGTCCGTTTCTTTTGTTCCTTC 58.402 43.478 0.00 0.00 0.00 3.46
57 58 3.181490 GCTGTCCGTTTCTTTTGTTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
58 59 2.357952 GCTGTCCGTTTCTTTTGTTCCT 59.642 45.455 0.00 0.00 0.00 3.36
59 60 2.543031 GGCTGTCCGTTTCTTTTGTTCC 60.543 50.000 0.00 0.00 0.00 3.62
60 61 2.098443 TGGCTGTCCGTTTCTTTTGTTC 59.902 45.455 0.00 0.00 34.14 3.18
61 62 2.096248 TGGCTGTCCGTTTCTTTTGTT 58.904 42.857 0.00 0.00 34.14 2.83
62 63 1.676006 CTGGCTGTCCGTTTCTTTTGT 59.324 47.619 0.00 0.00 34.14 2.83
63 64 1.946768 TCTGGCTGTCCGTTTCTTTTG 59.053 47.619 0.00 0.00 34.14 2.44
64 65 2.341846 TCTGGCTGTCCGTTTCTTTT 57.658 45.000 0.00 0.00 34.14 2.27
65 66 2.154462 CATCTGGCTGTCCGTTTCTTT 58.846 47.619 0.00 0.00 34.14 2.52
66 67 1.347707 TCATCTGGCTGTCCGTTTCTT 59.652 47.619 0.00 0.00 34.14 2.52
67 68 0.976641 TCATCTGGCTGTCCGTTTCT 59.023 50.000 0.00 0.00 34.14 2.52
68 69 1.734465 CTTCATCTGGCTGTCCGTTTC 59.266 52.381 0.00 0.00 34.14 2.78
69 70 1.611673 CCTTCATCTGGCTGTCCGTTT 60.612 52.381 0.00 0.00 34.14 3.60
70 71 0.036010 CCTTCATCTGGCTGTCCGTT 60.036 55.000 0.00 0.00 34.14 4.44
71 72 1.599047 CCTTCATCTGGCTGTCCGT 59.401 57.895 0.00 0.00 34.14 4.69
72 73 1.817099 GCCTTCATCTGGCTGTCCG 60.817 63.158 0.00 0.00 46.38 4.79
73 74 4.232310 GCCTTCATCTGGCTGTCC 57.768 61.111 0.00 0.00 46.38 4.02
79 80 0.745486 TCGCACATGCCTTCATCTGG 60.745 55.000 0.00 0.00 37.91 3.86
80 81 1.306148 ATCGCACATGCCTTCATCTG 58.694 50.000 0.00 0.00 37.91 2.90
81 82 2.916702 TATCGCACATGCCTTCATCT 57.083 45.000 0.00 0.00 37.91 2.90
82 83 5.050499 GCTATATATCGCACATGCCTTCATC 60.050 44.000 4.43 0.00 37.91 2.92
83 84 4.813161 GCTATATATCGCACATGCCTTCAT 59.187 41.667 4.43 0.00 37.91 2.57
84 85 4.183865 GCTATATATCGCACATGCCTTCA 58.816 43.478 4.43 0.00 37.91 3.02
85 86 4.183865 TGCTATATATCGCACATGCCTTC 58.816 43.478 7.79 0.00 37.91 3.46
86 87 4.206477 TGCTATATATCGCACATGCCTT 57.794 40.909 7.79 0.00 37.91 4.35
87 88 3.893326 TGCTATATATCGCACATGCCT 57.107 42.857 7.79 0.00 37.91 4.75
88 89 4.148871 CGTATGCTATATATCGCACATGCC 59.851 45.833 13.60 1.13 39.21 4.40
89 90 4.148871 CCGTATGCTATATATCGCACATGC 59.851 45.833 13.60 3.08 39.21 4.06
90 91 5.281727 ACCGTATGCTATATATCGCACATG 58.718 41.667 13.60 8.20 39.21 3.21
91 92 5.515797 ACCGTATGCTATATATCGCACAT 57.484 39.130 13.60 2.78 39.21 3.21
92 93 4.976224 ACCGTATGCTATATATCGCACA 57.024 40.909 13.60 0.00 39.21 4.57
93 94 5.229469 GTGAACCGTATGCTATATATCGCAC 59.771 44.000 13.60 2.51 39.21 5.34
94 95 5.124936 AGTGAACCGTATGCTATATATCGCA 59.875 40.000 13.68 13.68 40.87 5.10
95 96 5.579718 AGTGAACCGTATGCTATATATCGC 58.420 41.667 2.33 2.33 0.00 4.58
96 97 7.226128 TCCTAGTGAACCGTATGCTATATATCG 59.774 40.741 0.00 0.00 0.00 2.92
97 98 8.447924 TCCTAGTGAACCGTATGCTATATATC 57.552 38.462 0.00 0.00 0.00 1.63
98 99 8.851145 CATCCTAGTGAACCGTATGCTATATAT 58.149 37.037 0.00 0.00 0.00 0.86
99 100 8.050930 TCATCCTAGTGAACCGTATGCTATATA 58.949 37.037 0.00 0.00 0.00 0.86
100 101 6.890268 TCATCCTAGTGAACCGTATGCTATAT 59.110 38.462 0.00 0.00 0.00 0.86
101 102 6.243148 TCATCCTAGTGAACCGTATGCTATA 58.757 40.000 0.00 0.00 0.00 1.31
102 103 5.077564 TCATCCTAGTGAACCGTATGCTAT 58.922 41.667 0.00 0.00 0.00 2.97
103 104 4.466827 TCATCCTAGTGAACCGTATGCTA 58.533 43.478 0.00 0.00 0.00 3.49
104 105 3.296854 TCATCCTAGTGAACCGTATGCT 58.703 45.455 0.00 0.00 0.00 3.79
105 106 3.728076 TCATCCTAGTGAACCGTATGC 57.272 47.619 0.00 0.00 0.00 3.14
113 114 4.343814 TCACACACAGTTCATCCTAGTGAA 59.656 41.667 0.00 0.00 35.84 3.18
114 115 3.895041 TCACACACAGTTCATCCTAGTGA 59.105 43.478 0.00 0.00 34.47 3.41
115 116 4.257267 TCACACACAGTTCATCCTAGTG 57.743 45.455 0.00 0.00 36.34 2.74
116 117 5.489792 AATCACACACAGTTCATCCTAGT 57.510 39.130 0.00 0.00 0.00 2.57
117 118 6.754209 GTCTAATCACACACAGTTCATCCTAG 59.246 42.308 0.00 0.00 0.00 3.02
118 119 6.210584 TGTCTAATCACACACAGTTCATCCTA 59.789 38.462 0.00 0.00 0.00 2.94
119 120 5.012046 TGTCTAATCACACACAGTTCATCCT 59.988 40.000 0.00 0.00 0.00 3.24
120 121 5.237815 TGTCTAATCACACACAGTTCATCC 58.762 41.667 0.00 0.00 0.00 3.51
121 122 6.202762 TGTTGTCTAATCACACACAGTTCATC 59.797 38.462 0.00 0.00 0.00 2.92
122 123 6.017934 GTGTTGTCTAATCACACACAGTTCAT 60.018 38.462 0.00 0.00 32.79 2.57
123 124 5.293324 GTGTTGTCTAATCACACACAGTTCA 59.707 40.000 0.00 0.00 32.79 3.18
124 125 5.293324 TGTGTTGTCTAATCACACACAGTTC 59.707 40.000 0.25 0.00 37.20 3.01
125 126 5.182487 TGTGTTGTCTAATCACACACAGTT 58.818 37.500 0.25 0.00 37.20 3.16
126 127 4.765273 TGTGTTGTCTAATCACACACAGT 58.235 39.130 0.25 0.00 37.20 3.55
127 128 5.733226 TTGTGTTGTCTAATCACACACAG 57.267 39.130 3.89 0.00 40.92 3.66
128 129 5.819901 TCATTGTGTTGTCTAATCACACACA 59.180 36.000 3.89 0.00 40.92 3.72
129 130 6.299023 TCATTGTGTTGTCTAATCACACAC 57.701 37.500 3.89 0.00 40.92 3.82
130 131 6.934048 TTCATTGTGTTGTCTAATCACACA 57.066 33.333 0.25 0.25 40.92 3.72
131 132 8.693504 CATTTTCATTGTGTTGTCTAATCACAC 58.306 33.333 0.00 0.00 40.92 3.82
132 133 7.866898 CCATTTTCATTGTGTTGTCTAATCACA 59.133 33.333 0.00 0.00 39.76 3.58
133 134 7.867403 ACCATTTTCATTGTGTTGTCTAATCAC 59.133 33.333 0.00 0.00 0.00 3.06
134 135 7.950512 ACCATTTTCATTGTGTTGTCTAATCA 58.049 30.769 0.00 0.00 0.00 2.57
135 136 8.816640 AACCATTTTCATTGTGTTGTCTAATC 57.183 30.769 0.00 0.00 0.00 1.75
138 139 9.522804 GTTAAACCATTTTCATTGTGTTGTCTA 57.477 29.630 0.00 0.00 0.00 2.59
139 140 8.257306 AGTTAAACCATTTTCATTGTGTTGTCT 58.743 29.630 0.00 0.00 0.00 3.41
140 141 8.327429 CAGTTAAACCATTTTCATTGTGTTGTC 58.673 33.333 0.00 0.00 0.00 3.18
141 142 8.037758 TCAGTTAAACCATTTTCATTGTGTTGT 58.962 29.630 0.00 0.00 0.00 3.32
142 143 8.417780 TCAGTTAAACCATTTTCATTGTGTTG 57.582 30.769 0.00 0.00 0.00 3.33
143 144 8.878769 GTTCAGTTAAACCATTTTCATTGTGTT 58.121 29.630 0.00 0.00 0.00 3.32
144 145 8.037758 TGTTCAGTTAAACCATTTTCATTGTGT 58.962 29.630 0.00 0.00 0.00 3.72
145 146 8.417780 TGTTCAGTTAAACCATTTTCATTGTG 57.582 30.769 0.00 0.00 0.00 3.33
146 147 9.097257 CTTGTTCAGTTAAACCATTTTCATTGT 57.903 29.630 0.00 0.00 0.00 2.71
147 148 9.311916 TCTTGTTCAGTTAAACCATTTTCATTG 57.688 29.630 0.00 0.00 0.00 2.82
149 150 9.480053 CATCTTGTTCAGTTAAACCATTTTCAT 57.520 29.630 0.00 0.00 0.00 2.57
150 151 8.474025 ACATCTTGTTCAGTTAAACCATTTTCA 58.526 29.630 0.00 0.00 0.00 2.69
151 152 8.755018 CACATCTTGTTCAGTTAAACCATTTTC 58.245 33.333 0.00 0.00 0.00 2.29
152 153 8.257306 ACACATCTTGTTCAGTTAAACCATTTT 58.743 29.630 0.00 0.00 33.09 1.82
153 154 7.706179 CACACATCTTGTTCAGTTAAACCATTT 59.294 33.333 0.00 0.00 35.67 2.32
154 155 7.147915 ACACACATCTTGTTCAGTTAAACCATT 60.148 33.333 0.00 0.00 35.67 3.16
155 156 6.321181 ACACACATCTTGTTCAGTTAAACCAT 59.679 34.615 0.00 0.00 35.67 3.55
156 157 5.650266 ACACACATCTTGTTCAGTTAAACCA 59.350 36.000 0.00 0.00 35.67 3.67
157 158 5.971202 CACACACATCTTGTTCAGTTAAACC 59.029 40.000 0.00 0.00 35.67 3.27
158 159 6.781138 TCACACACATCTTGTTCAGTTAAAC 58.219 36.000 0.00 0.00 35.67 2.01
159 160 6.993786 TCACACACATCTTGTTCAGTTAAA 57.006 33.333 0.00 0.00 35.67 1.52
160 161 7.095816 CGTATCACACACATCTTGTTCAGTTAA 60.096 37.037 0.00 0.00 35.67 2.01
161 162 6.364976 CGTATCACACACATCTTGTTCAGTTA 59.635 38.462 0.00 0.00 35.67 2.24
162 163 5.177511 CGTATCACACACATCTTGTTCAGTT 59.822 40.000 0.00 0.00 35.67 3.16
163 164 4.686091 CGTATCACACACATCTTGTTCAGT 59.314 41.667 0.00 0.00 35.67 3.41
164 165 4.434725 GCGTATCACACACATCTTGTTCAG 60.435 45.833 0.00 0.00 35.67 3.02
165 166 3.431912 GCGTATCACACACATCTTGTTCA 59.568 43.478 0.00 0.00 35.67 3.18
166 167 3.481951 CGCGTATCACACACATCTTGTTC 60.482 47.826 0.00 0.00 35.67 3.18
167 168 2.411748 CGCGTATCACACACATCTTGTT 59.588 45.455 0.00 0.00 35.67 2.83
168 169 1.992667 CGCGTATCACACACATCTTGT 59.007 47.619 0.00 0.00 39.97 3.16
169 170 1.324435 CCGCGTATCACACACATCTTG 59.676 52.381 4.92 0.00 0.00 3.02
170 171 1.640428 CCGCGTATCACACACATCTT 58.360 50.000 4.92 0.00 0.00 2.40
171 172 0.806102 GCCGCGTATCACACACATCT 60.806 55.000 4.92 0.00 0.00 2.90
172 173 1.081556 TGCCGCGTATCACACACATC 61.082 55.000 4.92 0.00 0.00 3.06
173 174 0.672091 TTGCCGCGTATCACACACAT 60.672 50.000 4.92 0.00 0.00 3.21
174 175 0.880718 TTTGCCGCGTATCACACACA 60.881 50.000 4.92 0.00 0.00 3.72
175 176 0.446222 ATTTGCCGCGTATCACACAC 59.554 50.000 4.92 0.00 0.00 3.82
176 177 1.930503 CTATTTGCCGCGTATCACACA 59.069 47.619 4.92 0.00 0.00 3.72
177 178 1.260561 CCTATTTGCCGCGTATCACAC 59.739 52.381 4.92 0.00 0.00 3.82
178 179 1.134640 ACCTATTTGCCGCGTATCACA 60.135 47.619 4.92 0.00 0.00 3.58
179 180 1.525619 GACCTATTTGCCGCGTATCAC 59.474 52.381 4.92 0.00 0.00 3.06
180 181 1.539496 GGACCTATTTGCCGCGTATCA 60.539 52.381 4.92 0.00 0.00 2.15
181 182 1.145803 GGACCTATTTGCCGCGTATC 58.854 55.000 4.92 0.00 0.00 2.24
182 183 0.599204 CGGACCTATTTGCCGCGTAT 60.599 55.000 4.92 0.00 38.46 3.06
183 184 1.227031 CGGACCTATTTGCCGCGTA 60.227 57.895 4.92 0.00 38.46 4.42
184 185 2.510691 CGGACCTATTTGCCGCGT 60.511 61.111 4.92 0.00 38.46 6.01
188 189 6.930667 TTTCTAATTACGGACCTATTTGCC 57.069 37.500 0.00 0.00 0.00 4.52
189 190 7.855904 CACATTTCTAATTACGGACCTATTTGC 59.144 37.037 0.00 0.00 0.00 3.68
190 191 8.889717 ACACATTTCTAATTACGGACCTATTTG 58.110 33.333 0.00 0.00 0.00 2.32
192 193 9.538508 GTACACATTTCTAATTACGGACCTATT 57.461 33.333 0.00 0.00 0.00 1.73
193 194 7.864379 CGTACACATTTCTAATTACGGACCTAT 59.136 37.037 0.00 0.00 31.02 2.57
194 195 7.066887 TCGTACACATTTCTAATTACGGACCTA 59.933 37.037 0.00 0.00 34.49 3.08
195 196 6.038356 CGTACACATTTCTAATTACGGACCT 58.962 40.000 0.00 0.00 31.02 3.85
196 197 6.035843 TCGTACACATTTCTAATTACGGACC 58.964 40.000 0.00 0.00 34.49 4.46
197 198 7.485913 TCTTCGTACACATTTCTAATTACGGAC 59.514 37.037 0.00 0.00 34.49 4.79
198 199 7.485913 GTCTTCGTACACATTTCTAATTACGGA 59.514 37.037 0.00 0.00 34.49 4.69
199 200 7.253883 GGTCTTCGTACACATTTCTAATTACGG 60.254 40.741 0.00 0.00 34.49 4.02
200 201 7.274033 TGGTCTTCGTACACATTTCTAATTACG 59.726 37.037 0.00 0.00 34.92 3.18
201 202 8.470040 TGGTCTTCGTACACATTTCTAATTAC 57.530 34.615 0.00 0.00 0.00 1.89
202 203 9.661563 ATTGGTCTTCGTACACATTTCTAATTA 57.338 29.630 0.00 0.00 0.00 1.40
203 204 7.972832 TTGGTCTTCGTACACATTTCTAATT 57.027 32.000 0.00 0.00 0.00 1.40
204 205 9.661563 TTATTGGTCTTCGTACACATTTCTAAT 57.338 29.630 0.00 0.00 0.00 1.73
205 206 9.661563 ATTATTGGTCTTCGTACACATTTCTAA 57.338 29.630 0.00 0.00 0.00 2.10
207 208 9.661563 TTATTATTGGTCTTCGTACACATTTCT 57.338 29.630 0.00 0.00 0.00 2.52
208 209 9.698617 GTTATTATTGGTCTTCGTACACATTTC 57.301 33.333 0.00 0.00 0.00 2.17
209 210 9.221933 TGTTATTATTGGTCTTCGTACACATTT 57.778 29.630 0.00 0.00 0.00 2.32
210 211 8.662141 GTGTTATTATTGGTCTTCGTACACATT 58.338 33.333 0.00 0.00 34.06 2.71
211 212 7.820386 TGTGTTATTATTGGTCTTCGTACACAT 59.180 33.333 0.00 0.00 37.72 3.21
212 213 7.153315 TGTGTTATTATTGGTCTTCGTACACA 58.847 34.615 0.00 0.00 39.58 3.72
213 214 7.543172 TCTGTGTTATTATTGGTCTTCGTACAC 59.457 37.037 0.00 0.00 34.37 2.90
214 215 7.543172 GTCTGTGTTATTATTGGTCTTCGTACA 59.457 37.037 0.00 0.00 0.00 2.90
215 216 7.253552 CGTCTGTGTTATTATTGGTCTTCGTAC 60.254 40.741 0.00 0.00 0.00 3.67
216 217 6.748658 CGTCTGTGTTATTATTGGTCTTCGTA 59.251 38.462 0.00 0.00 0.00 3.43
217 218 5.575606 CGTCTGTGTTATTATTGGTCTTCGT 59.424 40.000 0.00 0.00 0.00 3.85
218 219 5.803461 TCGTCTGTGTTATTATTGGTCTTCG 59.197 40.000 0.00 0.00 0.00 3.79
219 220 7.772332 ATCGTCTGTGTTATTATTGGTCTTC 57.228 36.000 0.00 0.00 0.00 2.87
220 221 7.414098 GCAATCGTCTGTGTTATTATTGGTCTT 60.414 37.037 0.00 0.00 0.00 3.01
221 222 6.037172 GCAATCGTCTGTGTTATTATTGGTCT 59.963 38.462 0.00 0.00 0.00 3.85
222 223 6.037172 AGCAATCGTCTGTGTTATTATTGGTC 59.963 38.462 0.00 0.00 30.26 4.02
223 224 5.880332 AGCAATCGTCTGTGTTATTATTGGT 59.120 36.000 0.00 0.00 0.00 3.67
224 225 6.194463 CAGCAATCGTCTGTGTTATTATTGG 58.806 40.000 0.00 0.00 0.00 3.16
225 226 5.678483 GCAGCAATCGTCTGTGTTATTATTG 59.322 40.000 0.00 0.00 34.21 1.90
226 227 5.586243 AGCAGCAATCGTCTGTGTTATTATT 59.414 36.000 0.00 0.00 34.21 1.40
227 228 5.118990 AGCAGCAATCGTCTGTGTTATTAT 58.881 37.500 0.00 0.00 34.21 1.28
228 229 4.503910 AGCAGCAATCGTCTGTGTTATTA 58.496 39.130 0.00 0.00 34.21 0.98
229 230 3.338249 AGCAGCAATCGTCTGTGTTATT 58.662 40.909 0.00 0.00 34.21 1.40
230 231 2.977914 AGCAGCAATCGTCTGTGTTAT 58.022 42.857 0.00 0.00 34.21 1.89
231 232 2.455674 AGCAGCAATCGTCTGTGTTA 57.544 45.000 0.00 0.00 34.21 2.41
232 233 2.455674 TAGCAGCAATCGTCTGTGTT 57.544 45.000 0.00 0.00 34.21 3.32
233 234 2.455674 TTAGCAGCAATCGTCTGTGT 57.544 45.000 0.00 0.00 34.21 3.72
234 235 4.551603 GCTTATTAGCAGCAATCGTCTGTG 60.552 45.833 0.00 0.00 46.95 3.66
235 236 3.557595 GCTTATTAGCAGCAATCGTCTGT 59.442 43.478 0.00 0.00 46.95 3.41
236 237 4.125912 GCTTATTAGCAGCAATCGTCTG 57.874 45.455 0.00 0.00 46.95 3.51
249 250 6.757010 ACAGAGTAAATCACACGGCTTATTAG 59.243 38.462 0.00 0.00 0.00 1.73
250 251 6.636705 ACAGAGTAAATCACACGGCTTATTA 58.363 36.000 0.00 0.00 0.00 0.98
251 252 5.488341 ACAGAGTAAATCACACGGCTTATT 58.512 37.500 0.00 0.00 0.00 1.40
252 253 5.086104 ACAGAGTAAATCACACGGCTTAT 57.914 39.130 0.00 0.00 0.00 1.73
253 254 4.219944 AGACAGAGTAAATCACACGGCTTA 59.780 41.667 0.00 0.00 0.00 3.09
254 255 3.006967 AGACAGAGTAAATCACACGGCTT 59.993 43.478 0.00 0.00 0.00 4.35
255 256 2.563179 AGACAGAGTAAATCACACGGCT 59.437 45.455 0.00 0.00 0.00 5.52
256 257 2.960819 AGACAGAGTAAATCACACGGC 58.039 47.619 0.00 0.00 0.00 5.68
257 258 7.028926 ACTATAGACAGAGTAAATCACACGG 57.971 40.000 6.78 0.00 0.00 4.94
258 259 9.043079 TCTACTATAGACAGAGTAAATCACACG 57.957 37.037 6.78 0.00 28.38 4.49
298 299 9.999660 AACTGAGACATTACGAGTAGAGATATA 57.000 33.333 0.00 0.00 0.00 0.86
299 300 8.779303 CAACTGAGACATTACGAGTAGAGATAT 58.221 37.037 0.00 0.00 0.00 1.63
311 312 5.652518 GGAGACTACCAACTGAGACATTAC 58.347 45.833 0.00 0.00 0.00 1.89
317 318 1.174783 GCGGAGACTACCAACTGAGA 58.825 55.000 0.00 0.00 0.00 3.27
318 319 0.173708 GGCGGAGACTACCAACTGAG 59.826 60.000 0.00 0.00 0.00 3.35
319 320 1.592400 CGGCGGAGACTACCAACTGA 61.592 60.000 0.00 0.00 0.00 3.41
320 321 1.153823 CGGCGGAGACTACCAACTG 60.154 63.158 0.00 0.00 0.00 3.16
340 341 5.344128 CCGATATACGTGGGACGAAATTTAG 59.656 44.000 0.00 0.00 46.05 1.85
387 388 0.671472 TTGATGCGGCTCACAGTGAG 60.671 55.000 24.34 24.34 46.90 3.51
392 393 1.199789 GTTTGATTGATGCGGCTCACA 59.800 47.619 0.00 0.00 0.00 3.58
393 394 1.468054 GGTTTGATTGATGCGGCTCAC 60.468 52.381 0.00 0.00 0.00 3.51
404 405 8.872845 GCTATGAGGTTTTTATTGGTTTGATTG 58.127 33.333 0.00 0.00 0.00 2.67
405 406 7.759433 CGCTATGAGGTTTTTATTGGTTTGATT 59.241 33.333 0.00 0.00 0.00 2.57
406 407 7.122055 TCGCTATGAGGTTTTTATTGGTTTGAT 59.878 33.333 0.00 0.00 0.00 2.57
409 410 6.827586 TCGCTATGAGGTTTTTATTGGTTT 57.172 33.333 0.00 0.00 0.00 3.27
443 444 0.618981 GGGAGGTTAACCCTGGACTG 59.381 60.000 21.30 0.00 46.51 3.51
444 445 0.908180 CGGGAGGTTAACCCTGGACT 60.908 60.000 21.30 0.72 46.51 3.85
445 446 1.196766 ACGGGAGGTTAACCCTGGAC 61.197 60.000 21.30 7.01 46.51 4.02
446 447 0.906282 GACGGGAGGTTAACCCTGGA 60.906 60.000 21.30 0.00 46.51 3.86
447 448 1.600638 GACGGGAGGTTAACCCTGG 59.399 63.158 21.30 10.57 46.51 4.45
448 449 1.217244 CGACGGGAGGTTAACCCTG 59.783 63.158 21.30 13.82 46.51 4.45
450 451 2.125391 GCGACGGGAGGTTAACCC 60.125 66.667 21.30 12.26 43.57 4.11
451 452 1.447314 CTGCGACGGGAGGTTAACC 60.447 63.158 17.41 17.41 0.00 2.85
452 453 0.735287 GACTGCGACGGGAGGTTAAC 60.735 60.000 0.00 0.00 35.64 2.01
453 454 1.588082 GACTGCGACGGGAGGTTAA 59.412 57.895 0.00 0.00 35.64 2.01
454 455 2.345760 GGACTGCGACGGGAGGTTA 61.346 63.158 0.00 0.00 35.64 2.85
455 456 3.692406 GGACTGCGACGGGAGGTT 61.692 66.667 0.00 0.00 35.64 3.50
456 457 4.988716 TGGACTGCGACGGGAGGT 62.989 66.667 0.00 0.00 35.64 3.85
457 458 4.135153 CTGGACTGCGACGGGAGG 62.135 72.222 0.00 0.00 35.64 4.30
458 459 4.135153 CCTGGACTGCGACGGGAG 62.135 72.222 0.00 0.00 35.02 4.30
461 462 2.162338 TTAACCCTGGACTGCGACGG 62.162 60.000 0.00 0.00 0.00 4.79
462 463 1.012486 GTTAACCCTGGACTGCGACG 61.012 60.000 0.00 0.00 0.00 5.12
463 464 0.672711 GGTTAACCCTGGACTGCGAC 60.673 60.000 14.16 0.00 0.00 5.19
464 465 0.834687 AGGTTAACCCTGGACTGCGA 60.835 55.000 21.30 0.00 44.08 5.10
465 466 0.391263 GAGGTTAACCCTGGACTGCG 60.391 60.000 21.30 0.00 46.51 5.18
466 467 0.035343 GGAGGTTAACCCTGGACTGC 60.035 60.000 21.30 2.98 46.51 4.40
565 568 1.153706 GGGCGATCGAACGAGGAAA 60.154 57.895 21.57 0.00 35.09 3.13
602 605 1.203250 TGTGGGAGATGTGGGTGTCTA 60.203 52.381 0.00 0.00 0.00 2.59
730 2428 1.065418 CAAGCGATTTGGTAGGAGGGT 60.065 52.381 0.00 0.00 32.95 4.34
732 2430 2.691409 TCAAGCGATTTGGTAGGAGG 57.309 50.000 0.00 0.00 37.39 4.30
783 2481 1.349542 TGCTGGTGGGTGTACCTTGT 61.350 55.000 0.44 0.00 41.43 3.16
789 2487 0.472161 TGGTAGTGCTGGTGGGTGTA 60.472 55.000 0.00 0.00 0.00 2.90
792 2490 0.547712 ATCTGGTAGTGCTGGTGGGT 60.548 55.000 0.00 0.00 0.00 4.51
931 2630 1.579429 GGGTTGTTGGTGATGCGAC 59.421 57.895 0.00 0.00 0.00 5.19
932 2631 1.602323 GGGGTTGTTGGTGATGCGA 60.602 57.895 0.00 0.00 0.00 5.10
939 2642 4.906537 GGCCGTGGGGTTGTTGGT 62.907 66.667 0.00 0.00 34.97 3.67
942 2645 4.636435 CTCGGCCGTGGGGTTGTT 62.636 66.667 27.15 0.00 34.97 2.83
1109 2815 0.652592 GATGCGGACAAAGATGACGG 59.347 55.000 0.00 0.00 33.41 4.79
1123 2829 4.514577 ACCCGAGCGGAAGATGCG 62.515 66.667 11.05 0.00 37.50 4.73
1166 2872 2.699954 AGAAAACGAGCGTGAATGGAT 58.300 42.857 0.00 0.00 0.00 3.41
1167 2873 2.163818 AGAAAACGAGCGTGAATGGA 57.836 45.000 0.00 0.00 0.00 3.41
1168 2874 2.969443 AAGAAAACGAGCGTGAATGG 57.031 45.000 0.00 0.00 0.00 3.16
1175 2883 5.457473 ACAACCAAAATTAAGAAAACGAGCG 59.543 36.000 0.00 0.00 0.00 5.03
1188 2896 5.482163 AATCCGGATCAACAACCAAAATT 57.518 34.783 19.43 0.00 0.00 1.82
1222 3145 6.607689 TCAACATTGACATTGTATTTCGTCC 58.392 36.000 3.52 0.00 31.01 4.79
1257 3185 4.759183 AGACTCCATCTGCTGAAGAAAAAC 59.241 41.667 0.00 0.00 38.79 2.43
1259 3187 4.564406 GGAGACTCCATCTGCTGAAGAAAA 60.564 45.833 17.10 0.00 42.38 2.29
1303 3234 9.410556 ACAATGTTAATCATTTGAGCAACTTAC 57.589 29.630 7.94 0.00 43.33 2.34
1348 3279 1.011595 TGGAGCTCCTCTACCTCCTT 58.988 55.000 32.28 0.00 44.32 3.36
1640 3736 7.953752 AGGTAAGGAGCATTAGTATTGTAGAC 58.046 38.462 0.00 0.00 0.00 2.59
1647 3743 7.916077 ACTGTTAGGTAAGGAGCATTAGTAT 57.084 36.000 0.00 0.00 0.00 2.12
1665 3761 9.938280 ACTATAACTAATGACAAGCAACTGTTA 57.062 29.630 0.00 0.00 0.00 2.41
1667 3763 7.148407 GCACTATAACTAATGACAAGCAACTGT 60.148 37.037 0.00 0.00 0.00 3.55
1671 3767 7.148255 CCAAGCACTATAACTAATGACAAGCAA 60.148 37.037 0.00 0.00 0.00 3.91
1837 3933 9.836864 TCTACTGATACAAAATATGCAATCACT 57.163 29.630 0.00 0.00 33.51 3.41
2087 4185 8.341173 CAAATAACAGATTGGATCAGCTACTTC 58.659 37.037 0.00 0.00 0.00 3.01
2091 4189 7.933577 CCTACAAATAACAGATTGGATCAGCTA 59.066 37.037 0.00 0.00 0.00 3.32
2304 4406 9.098355 CCTTGTAAAAGACTGAATATCATTCGA 57.902 33.333 0.00 0.00 32.15 3.71
2336 4446 1.177895 TTGATTGCAAGCAAGGCGGA 61.178 50.000 25.24 2.99 39.47 5.54
2419 4535 2.737180 CGTGCACTCCAGTCCTGT 59.263 61.111 16.19 0.00 0.00 4.00
2470 4586 2.095461 AGCTACGCTGAGAAGATGTCA 58.905 47.619 0.00 0.00 37.57 3.58
2742 4864 7.664082 AATGATGTAGATGAAGATAAAGCGG 57.336 36.000 0.00 0.00 0.00 5.52
3063 5227 2.905085 TGCCAATGTCCATGACCAAATT 59.095 40.909 0.00 0.00 0.00 1.82
3073 5237 8.938801 AATAGAAACATATATGCCAATGTCCA 57.061 30.769 12.79 0.00 35.30 4.02
3123 5287 4.020307 TCATCAGCTCACACCTATCAACAA 60.020 41.667 0.00 0.00 0.00 2.83
3156 5320 0.961019 GAGAACCTGCCAACATGCAA 59.039 50.000 0.00 0.00 41.51 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.