Multiple sequence alignment - TraesCS7A01G342100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G342100 chr7A 100.000 2408 0 0 1254 3661 502254998 502252591 0.000000e+00 4447
1 TraesCS7A01G342100 chr7A 100.000 1074 0 0 1 1074 502256251 502255178 0.000000e+00 1984
2 TraesCS7A01G342100 chr7D 97.536 1583 39 0 1254 2836 430230492 430232074 0.000000e+00 2708
3 TraesCS7A01G342100 chr7D 95.140 823 29 4 2845 3661 430232051 430232868 0.000000e+00 1288
4 TraesCS7A01G342100 chr7D 89.216 612 48 12 471 1074 430229890 430230491 0.000000e+00 749
5 TraesCS7A01G342100 chr7D 87.320 347 40 2 5 348 430229547 430229892 9.530000e-106 394
6 TraesCS7A01G342100 chr7B 97.473 1583 37 1 1254 2836 447974895 447976474 0.000000e+00 2699
7 TraesCS7A01G342100 chr7B 94.641 821 32 7 2845 3661 447976451 447977263 0.000000e+00 1262
8 TraesCS7A01G342100 chr7B 95.172 290 10 2 786 1074 447974608 447974894 4.310000e-124 455
9 TraesCS7A01G342100 chr7B 87.313 268 30 3 1 265 447973057 447973323 1.650000e-78 303
10 TraesCS7A01G342100 chr2D 93.227 251 12 2 3411 3661 104969966 104969721 7.470000e-97 364
11 TraesCS7A01G342100 chr2D 92.430 251 14 2 3411 3661 89148469 89148714 1.620000e-93 353
12 TraesCS7A01G342100 chr4B 92.169 166 8 3 3496 3661 41368820 41368980 2.840000e-56 230
13 TraesCS7A01G342100 chr6D 94.697 132 7 0 346 477 87124472 87124603 4.790000e-49 206
14 TraesCS7A01G342100 chr5D 94.574 129 7 0 345 473 244369646 244369774 2.230000e-47 200
15 TraesCS7A01G342100 chr5D 94.488 127 7 0 346 472 7945782 7945908 2.880000e-46 196
16 TraesCS7A01G342100 chr5D 92.647 68 5 0 1393 1460 473516305 473516372 8.370000e-17 99
17 TraesCS7A01G342100 chr1B 92.481 133 10 0 342 474 642926696 642926828 1.340000e-44 191
18 TraesCS7A01G342100 chr1B 90.141 142 13 1 332 473 273653272 273653412 2.250000e-42 183
19 TraesCS7A01G342100 chr2B 91.304 138 12 0 338 475 783653853 783653990 4.830000e-44 189
20 TraesCS7A01G342100 chr2B 90.141 142 13 1 339 479 710271028 710270887 2.250000e-42 183
21 TraesCS7A01G342100 chr3A 90.647 139 12 1 334 472 55506796 55506933 2.250000e-42 183
22 TraesCS7A01G342100 chr5B 88.966 145 16 0 330 474 70794194 70794338 2.900000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G342100 chr7A 502252591 502256251 3660 True 3215.50 4447 100.00000 1 3661 2 chr7A.!!$R1 3660
1 TraesCS7A01G342100 chr7D 430229547 430232868 3321 False 1284.75 2708 92.30300 5 3661 4 chr7D.!!$F1 3656
2 TraesCS7A01G342100 chr7B 447973057 447977263 4206 False 1179.75 2699 93.64975 1 3661 4 chr7B.!!$F1 3660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 301 0.040336 CAGATGCTGATGCCAATCGC 60.040 55.0 0.0 0.0 38.71 4.58 F
1940 2874 0.108472 TCACTGATGAGGAGCTTGCG 60.108 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 3171 1.031571 CACCCCATGTCATGAACGGG 61.032 60.0 19.01 19.01 35.93 5.28 R
3354 4291 0.811281 CCCCTGCGTTTTCAGAATCC 59.189 55.0 0.00 0.00 36.19 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.216710 GAGAGTCGAAGCCCACCAG 59.783 63.158 0.00 0.00 0.00 4.00
74 75 5.913137 TTGAGGTTGTCACTTTGATGTTT 57.087 34.783 0.00 0.00 33.71 2.83
75 76 5.247507 TGAGGTTGTCACTTTGATGTTTG 57.752 39.130 0.00 0.00 0.00 2.93
81 82 6.016777 GGTTGTCACTTTGATGTTTGATCTCT 60.017 38.462 0.00 0.00 0.00 3.10
83 84 6.528321 TGTCACTTTGATGTTTGATCTCTCT 58.472 36.000 0.00 0.00 0.00 3.10
86 87 6.994496 TCACTTTGATGTTTGATCTCTCTTGT 59.006 34.615 0.00 0.00 0.00 3.16
107 108 0.472471 TGAAGTTCCCCGCAAAGAGT 59.528 50.000 0.00 0.00 0.00 3.24
134 135 5.923204 ACCATGTAGAAAGATGATCTGGAC 58.077 41.667 0.00 0.00 0.00 4.02
135 136 5.163258 ACCATGTAGAAAGATGATCTGGACC 60.163 44.000 0.00 0.00 0.00 4.46
136 137 5.071519 CCATGTAGAAAGATGATCTGGACCT 59.928 44.000 0.00 0.00 0.00 3.85
152 156 1.537202 GACCTCCACATGTTTCACTGC 59.463 52.381 0.00 0.00 0.00 4.40
157 161 1.122849 CACATGTTTCACTGCGCAAC 58.877 50.000 13.05 6.92 0.00 4.17
158 162 0.737804 ACATGTTTCACTGCGCAACA 59.262 45.000 13.05 13.44 34.97 3.33
210 214 8.691661 ATAAAAACTGTTGTCATTACTGGACT 57.308 30.769 0.00 0.00 36.26 3.85
211 215 6.377327 AAAACTGTTGTCATTACTGGACTG 57.623 37.500 0.00 0.00 36.26 3.51
214 218 3.649073 TGTTGTCATTACTGGACTGACG 58.351 45.455 5.97 0.00 41.69 4.35
222 226 6.089150 GTCATTACTGGACTGACGAACTAAAC 59.911 42.308 0.00 0.00 30.97 2.01
233 237 7.531716 ACTGACGAACTAAACAATTGTCAAAA 58.468 30.769 12.39 0.00 34.80 2.44
234 238 8.024285 ACTGACGAACTAAACAATTGTCAAAAA 58.976 29.630 12.39 0.00 34.80 1.94
244 248 5.442402 ACAATTGTCAAAAATGCGCAAATC 58.558 33.333 17.11 1.56 0.00 2.17
254 258 5.989551 AAATGCGCAAATCTTGTTTTCTT 57.010 30.435 17.11 0.00 0.00 2.52
294 298 1.214673 ACCTCAGATGCTGATGCCAAT 59.785 47.619 0.00 0.00 39.92 3.16
297 301 0.040336 CAGATGCTGATGCCAATCGC 60.040 55.000 0.00 0.00 38.71 4.58
299 303 1.152819 ATGCTGATGCCAATCGCCT 60.153 52.632 0.00 0.00 38.71 5.52
307 311 2.346766 TGCCAATCGCCTATGTTGAT 57.653 45.000 0.00 0.00 36.24 2.57
318 322 2.789339 CCTATGTTGATGCGTGTACTCG 59.211 50.000 12.77 12.77 0.00 4.18
327 331 1.878070 CGTGTACTCGTAGTGGGCA 59.122 57.895 9.11 0.00 0.00 5.36
347 351 5.659048 GCAGTCAAGCCACTATTACATAC 57.341 43.478 0.00 0.00 0.00 2.39
348 352 5.360591 GCAGTCAAGCCACTATTACATACT 58.639 41.667 0.00 0.00 0.00 2.12
349 353 5.463724 GCAGTCAAGCCACTATTACATACTC 59.536 44.000 0.00 0.00 0.00 2.59
350 354 5.986135 CAGTCAAGCCACTATTACATACTCC 59.014 44.000 0.00 0.00 0.00 3.85
351 355 5.900123 AGTCAAGCCACTATTACATACTCCT 59.100 40.000 0.00 0.00 0.00 3.69
352 356 6.384305 AGTCAAGCCACTATTACATACTCCTT 59.616 38.462 0.00 0.00 0.00 3.36
353 357 6.702282 GTCAAGCCACTATTACATACTCCTTC 59.298 42.308 0.00 0.00 0.00 3.46
354 358 5.810080 AGCCACTATTACATACTCCTTCC 57.190 43.478 0.00 0.00 0.00 3.46
355 359 4.281182 AGCCACTATTACATACTCCTTCCG 59.719 45.833 0.00 0.00 0.00 4.30
356 360 4.038883 GCCACTATTACATACTCCTTCCGT 59.961 45.833 0.00 0.00 0.00 4.69
357 361 5.770417 CCACTATTACATACTCCTTCCGTC 58.230 45.833 0.00 0.00 0.00 4.79
358 362 5.278858 CCACTATTACATACTCCTTCCGTCC 60.279 48.000 0.00 0.00 0.00 4.79
359 363 4.518211 ACTATTACATACTCCTTCCGTCCG 59.482 45.833 0.00 0.00 0.00 4.79
360 364 2.715749 TACATACTCCTTCCGTCCGA 57.284 50.000 0.00 0.00 0.00 4.55
361 365 1.843368 ACATACTCCTTCCGTCCGAA 58.157 50.000 0.00 0.00 0.00 4.30
362 366 2.173519 ACATACTCCTTCCGTCCGAAA 58.826 47.619 0.00 0.00 0.00 3.46
363 367 2.564062 ACATACTCCTTCCGTCCGAAAA 59.436 45.455 0.00 0.00 0.00 2.29
364 368 3.197116 ACATACTCCTTCCGTCCGAAAAT 59.803 43.478 0.00 0.00 0.00 1.82
365 369 4.403432 ACATACTCCTTCCGTCCGAAAATA 59.597 41.667 0.00 0.00 0.00 1.40
366 370 3.242549 ACTCCTTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
367 371 2.830321 ACTCCTTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
368 372 3.260128 ACTCCTTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
369 373 3.592059 TCCTTCCGTCCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
370 374 3.007182 TCCTTCCGTCCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
371 375 3.370061 CCTTCCGTCCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
372 376 3.663995 TCCGTCCGAAAATACTTGTCA 57.336 42.857 0.00 0.00 0.00 3.58
373 377 4.196626 TCCGTCCGAAAATACTTGTCAT 57.803 40.909 0.00 0.00 0.00 3.06
374 378 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
375 379 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
376 380 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
377 381 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
378 382 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
379 383 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
380 384 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
381 385 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
382 386 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
383 387 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
390 394 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
391 395 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
392 396 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
393 397 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
394 398 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
395 399 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
396 400 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
404 408 9.607333 ATGGATAAAAGGAGATGTATCTAGACA 57.393 33.333 0.00 0.00 37.25 3.41
405 409 9.607333 TGGATAAAAGGAGATGTATCTAGACAT 57.393 33.333 0.00 0.00 42.82 3.06
454 458 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
455 459 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
456 460 9.474920 TTTGTCCATTTTGATGACAAGTATTTC 57.525 29.630 0.00 0.00 37.13 2.17
457 461 8.408043 TGTCCATTTTGATGACAAGTATTTCT 57.592 30.769 0.00 0.00 37.32 2.52
458 462 8.298854 TGTCCATTTTGATGACAAGTATTTCTG 58.701 33.333 0.00 0.00 37.32 3.02
459 463 7.756722 GTCCATTTTGATGACAAGTATTTCTGG 59.243 37.037 0.00 0.00 37.32 3.86
460 464 7.669304 TCCATTTTGATGACAAGTATTTCTGGA 59.331 33.333 0.00 0.00 37.32 3.86
461 465 7.756722 CCATTTTGATGACAAGTATTTCTGGAC 59.243 37.037 0.00 0.00 37.32 4.02
462 466 6.480524 TTTGATGACAAGTATTTCTGGACG 57.519 37.500 0.00 0.00 37.32 4.79
463 467 4.503910 TGATGACAAGTATTTCTGGACGG 58.496 43.478 0.00 0.00 0.00 4.79
464 468 4.221924 TGATGACAAGTATTTCTGGACGGA 59.778 41.667 0.00 0.00 0.00 4.69
465 469 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
466 470 3.830178 TGACAAGTATTTCTGGACGGAGA 59.170 43.478 0.00 0.00 0.00 3.71
467 471 4.082190 TGACAAGTATTTCTGGACGGAGAG 60.082 45.833 0.00 0.00 0.00 3.20
468 472 4.087182 ACAAGTATTTCTGGACGGAGAGA 58.913 43.478 0.00 0.00 0.00 3.10
469 473 4.158764 ACAAGTATTTCTGGACGGAGAGAG 59.841 45.833 0.00 0.00 0.00 3.20
489 493 2.558359 AGTACATGCCAACTTTGCCTTC 59.442 45.455 0.00 0.00 0.00 3.46
496 500 2.803133 GCCAACTTTGCCTTCTTGGTTC 60.803 50.000 0.00 0.00 36.34 3.62
512 516 6.279882 TCTTGGTTCGCAGAATTTTCAAAAT 58.720 32.000 0.00 0.00 45.90 1.82
513 517 7.429633 TCTTGGTTCGCAGAATTTTCAAAATA 58.570 30.769 0.00 0.00 45.90 1.40
517 521 8.547069 TGGTTCGCAGAATTTTCAAAATAAAAG 58.453 29.630 0.00 0.00 45.90 2.27
549 554 6.636454 ACCCACAGGAATAAAGTCTGAATA 57.364 37.500 0.00 0.00 36.73 1.75
585 605 8.110860 AGAAAAAGATTTCAATCCATGTACGT 57.889 30.769 0.00 0.00 46.03 3.57
593 613 7.674471 TTTCAATCCATGTACGTATCAAACA 57.326 32.000 0.00 0.00 0.00 2.83
598 618 9.995957 CAATCCATGTACGTATCAAACAATAAA 57.004 29.630 0.00 0.00 0.00 1.40
601 621 9.000486 TCCATGTACGTATCAAACAATAAACAA 58.000 29.630 0.00 0.00 0.00 2.83
652 672 9.829507 TGAAATTTCTTTAAATCAAAAGAGGCA 57.170 25.926 18.64 0.00 44.15 4.75
725 745 8.893727 ACGGGTTCAATTATATCAAGAAAAGAG 58.106 33.333 0.00 0.00 0.00 2.85
726 746 8.345565 CGGGTTCAATTATATCAAGAAAAGAGG 58.654 37.037 0.00 0.00 0.00 3.69
760 782 6.479990 TCATCGTCATTTCATTCTACACCATC 59.520 38.462 0.00 0.00 0.00 3.51
788 1718 9.250624 GTTTCTAAATATAAGACGTCTCAGCAT 57.749 33.333 20.33 12.09 0.00 3.79
841 1771 5.732331 TCTCATAGGATTCCAATTGGGTT 57.268 39.130 24.29 11.95 38.11 4.11
873 1804 1.443802 TGACGCGTCAATATTTGCCA 58.556 45.000 37.68 12.73 36.53 4.92
898 1829 2.670592 GTCCGGGAAAACCCACCG 60.671 66.667 0.00 0.00 46.79 4.94
903 1834 1.068417 GGGAAAACCCACCGCAAAC 59.932 57.895 0.00 0.00 36.34 2.93
1319 2250 4.021925 ACCACCTCCTCCAAGCGC 62.022 66.667 0.00 0.00 0.00 5.92
1940 2874 0.108472 TCACTGATGAGGAGCTTGCG 60.108 55.000 0.00 0.00 0.00 4.85
2042 2976 1.560866 CCAAAGAGGAGGAGGCAGCT 61.561 60.000 0.00 0.00 41.22 4.24
2063 2997 4.804108 CTGCCATACTGTATGCTCTAGTC 58.196 47.826 19.90 5.73 34.85 2.59
2231 3165 2.759114 CCAGCACCTGGTGTGGAT 59.241 61.111 29.22 13.74 45.82 3.41
2237 3171 0.036010 CACCTGGTGTGGATGAGTCC 60.036 60.000 18.76 0.00 45.31 3.85
2345 3279 0.178861 AGATCCCACCTCCACCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
2396 3330 3.627577 GGGATGCTGCGAAGAAGATAAAA 59.372 43.478 0.00 0.00 0.00 1.52
2399 3333 2.094258 TGCTGCGAAGAAGATAAAAGCG 59.906 45.455 0.00 0.00 32.09 4.68
2427 3361 4.082081 CACATATGTTTCACAAGCCACCAT 60.082 41.667 5.37 0.00 0.00 3.55
2435 3369 1.259840 ACAAGCCACCATTGCCATCC 61.260 55.000 0.00 0.00 0.00 3.51
2507 3441 3.760684 AGAAGTTTGTGAGGAATGCCATC 59.239 43.478 0.00 0.00 36.29 3.51
2673 3607 2.486592 CCGTGGTGATTTCAGTAAACCC 59.513 50.000 0.00 0.00 0.00 4.11
2682 3616 7.093509 GGTGATTTCAGTAAACCCCAATGTTAT 60.094 37.037 0.00 0.00 0.00 1.89
2816 3750 2.582436 GCATTTGCATGGCAGGCT 59.418 55.556 25.44 1.49 40.61 4.58
2821 3755 2.735151 TTTGCATGGCAGGCTCCCTT 62.735 55.000 25.44 0.00 40.61 3.95
2822 3756 1.862049 TTGCATGGCAGGCTCCCTTA 61.862 55.000 25.44 0.00 40.61 2.69
2823 3757 1.825622 GCATGGCAGGCTCCCTTAC 60.826 63.158 18.07 0.00 0.00 2.34
2824 3758 1.918253 CATGGCAGGCTCCCTTACT 59.082 57.895 0.00 0.00 0.00 2.24
2825 3759 0.465097 CATGGCAGGCTCCCTTACTG 60.465 60.000 0.00 0.00 35.40 2.74
2826 3760 0.916358 ATGGCAGGCTCCCTTACTGT 60.916 55.000 0.00 0.00 34.79 3.55
2827 3761 0.252513 TGGCAGGCTCCCTTACTGTA 60.253 55.000 0.00 0.00 34.79 2.74
2828 3762 1.132500 GGCAGGCTCCCTTACTGTAT 58.868 55.000 0.00 0.00 34.79 2.29
2829 3763 1.490910 GGCAGGCTCCCTTACTGTATT 59.509 52.381 0.00 0.00 34.79 1.89
2830 3764 2.565841 GCAGGCTCCCTTACTGTATTG 58.434 52.381 0.00 0.00 34.79 1.90
2831 3765 2.092914 GCAGGCTCCCTTACTGTATTGT 60.093 50.000 0.00 0.00 34.79 2.71
2832 3766 3.535561 CAGGCTCCCTTACTGTATTGTG 58.464 50.000 0.00 0.00 0.00 3.33
2833 3767 3.197766 CAGGCTCCCTTACTGTATTGTGA 59.802 47.826 0.00 0.00 0.00 3.58
2834 3768 4.040755 AGGCTCCCTTACTGTATTGTGAT 58.959 43.478 0.00 0.00 0.00 3.06
2835 3769 4.475016 AGGCTCCCTTACTGTATTGTGATT 59.525 41.667 0.00 0.00 0.00 2.57
2836 3770 4.576463 GGCTCCCTTACTGTATTGTGATTG 59.424 45.833 0.00 0.00 0.00 2.67
2837 3771 5.186198 GCTCCCTTACTGTATTGTGATTGT 58.814 41.667 0.00 0.00 0.00 2.71
2838 3772 5.065218 GCTCCCTTACTGTATTGTGATTGTG 59.935 44.000 0.00 0.00 0.00 3.33
2839 3773 6.367374 TCCCTTACTGTATTGTGATTGTGA 57.633 37.500 0.00 0.00 0.00 3.58
2840 3774 6.957631 TCCCTTACTGTATTGTGATTGTGAT 58.042 36.000 0.00 0.00 0.00 3.06
2841 3775 7.402054 TCCCTTACTGTATTGTGATTGTGATT 58.598 34.615 0.00 0.00 0.00 2.57
2842 3776 7.888021 TCCCTTACTGTATTGTGATTGTGATTT 59.112 33.333 0.00 0.00 0.00 2.17
2843 3777 9.173021 CCCTTACTGTATTGTGATTGTGATTTA 57.827 33.333 0.00 0.00 0.00 1.40
2847 3781 7.538575 ACTGTATTGTGATTGTGATTTAAGGC 58.461 34.615 0.00 0.00 0.00 4.35
2848 3782 7.394359 ACTGTATTGTGATTGTGATTTAAGGCT 59.606 33.333 0.00 0.00 0.00 4.58
2849 3783 7.761409 TGTATTGTGATTGTGATTTAAGGCTC 58.239 34.615 0.00 0.00 0.00 4.70
2850 3784 5.643379 TTGTGATTGTGATTTAAGGCTCC 57.357 39.130 0.00 0.00 0.00 4.70
2851 3785 4.016444 TGTGATTGTGATTTAAGGCTCCC 58.984 43.478 0.00 0.00 0.00 4.30
2852 3786 4.263905 TGTGATTGTGATTTAAGGCTCCCT 60.264 41.667 0.00 0.00 33.87 4.20
2853 3787 4.706962 GTGATTGTGATTTAAGGCTCCCTT 59.293 41.667 1.71 1.71 46.63 3.95
2901 3835 7.695480 TGCAAAGGTCTTACTAAAATATGCA 57.305 32.000 0.00 0.00 36.65 3.96
2923 3857 5.988561 GCATTGACACCAAATTTCCTGTTTA 59.011 36.000 0.00 0.00 35.67 2.01
2988 3922 4.689062 AGTCTAGGTTGAATCTCCCTGAA 58.311 43.478 2.29 0.00 0.00 3.02
3029 3963 5.353400 AGAAATGCATATGATATGGTCGCAG 59.647 40.000 13.82 0.00 0.00 5.18
3154 4091 6.933521 CAGGTCATATCAGAGTTAAGGAATGG 59.066 42.308 0.00 0.00 0.00 3.16
3431 4368 5.506649 GCGGTCAAGTTTATTGTTCTTCCAA 60.507 40.000 0.00 0.00 0.00 3.53
3518 4460 1.207329 GCCCTCGTATTGTGAAGTCCT 59.793 52.381 0.00 0.00 0.00 3.85
3575 4517 9.895138 TTAGAAGAAAGTAAAACTGGTAGTGTT 57.105 29.630 0.00 0.00 29.44 3.32
3614 4556 4.890158 TGATTCACTGGTTTGCTCTCTA 57.110 40.909 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.213537 CAATTGCTGGTGGGCTTCG 59.786 57.895 0.00 0.00 0.00 3.79
48 49 4.305989 TCAAAGTGACAACCTCAATTGC 57.694 40.909 0.00 0.00 37.27 3.56
74 75 4.262635 GGGAACTTCACACAAGAGAGATCA 60.263 45.833 0.00 0.00 0.00 2.92
75 76 4.249661 GGGAACTTCACACAAGAGAGATC 58.750 47.826 0.00 0.00 0.00 2.75
81 82 0.534203 GCGGGGAACTTCACACAAGA 60.534 55.000 0.00 0.00 0.00 3.02
83 84 0.394488 TTGCGGGGAACTTCACACAA 60.394 50.000 0.00 0.00 0.00 3.33
86 87 0.181587 TCTTTGCGGGGAACTTCACA 59.818 50.000 0.00 0.00 0.00 3.58
107 108 8.004801 TCCAGATCATCTTTCTACATGGTAGTA 58.995 37.037 0.00 0.00 0.00 1.82
134 135 0.518636 CGCAGTGAAACATGTGGAGG 59.481 55.000 0.00 0.00 41.43 4.30
135 136 0.110056 GCGCAGTGAAACATGTGGAG 60.110 55.000 0.30 0.00 41.43 3.86
136 137 0.817229 TGCGCAGTGAAACATGTGGA 60.817 50.000 5.66 0.00 41.43 4.02
152 156 8.987599 AGTCGAATAAATTATTATGTGTTGCG 57.012 30.769 0.00 0.00 32.06 4.85
183 187 7.744715 GTCCAGTAATGACAACAGTTTTTATCG 59.255 37.037 0.00 0.00 32.91 2.92
193 197 3.319689 TCGTCAGTCCAGTAATGACAACA 59.680 43.478 6.43 0.00 42.76 3.33
210 214 8.802856 CATTTTTGACAATTGTTTAGTTCGTCA 58.197 29.630 13.36 0.00 0.00 4.35
211 215 7.787480 GCATTTTTGACAATTGTTTAGTTCGTC 59.213 33.333 13.36 0.00 0.00 4.20
214 218 6.569693 GCGCATTTTTGACAATTGTTTAGTTC 59.430 34.615 13.36 0.00 0.00 3.01
222 226 5.681880 AGATTTGCGCATTTTTGACAATTG 58.318 33.333 12.75 3.24 0.00 2.32
233 237 5.989551 AAAGAAAACAAGATTTGCGCATT 57.010 30.435 12.75 0.75 0.00 3.56
234 238 5.989551 AAAAGAAAACAAGATTTGCGCAT 57.010 30.435 12.75 0.00 0.00 4.73
244 248 7.279758 TCCAACTTGGCATAAAAAGAAAACAAG 59.720 33.333 2.52 0.00 37.47 3.16
254 258 3.244044 GGTGCTTCCAACTTGGCATAAAA 60.244 43.478 2.52 0.00 37.47 1.52
287 291 2.346766 TCAACATAGGCGATTGGCAT 57.653 45.000 9.53 0.00 46.16 4.40
297 301 2.789339 CGAGTACACGCATCAACATAGG 59.211 50.000 0.00 0.00 0.00 2.57
299 303 3.497297 ACGAGTACACGCATCAACATA 57.503 42.857 12.79 0.00 36.70 2.29
307 311 1.878070 CCCACTACGAGTACACGCA 59.122 57.895 12.79 0.00 36.70 5.24
318 322 4.303257 GGCTTGACTGCCCACTAC 57.697 61.111 0.00 0.00 46.82 2.73
327 331 5.900123 AGGAGTATGTAATAGTGGCTTGACT 59.100 40.000 0.00 0.00 31.17 3.41
341 345 2.715749 TCGGACGGAAGGAGTATGTA 57.284 50.000 0.00 0.00 0.00 2.29
345 349 4.019174 AGTATTTTCGGACGGAAGGAGTA 58.981 43.478 0.00 0.00 35.70 2.59
346 350 2.830321 AGTATTTTCGGACGGAAGGAGT 59.170 45.455 0.00 0.00 35.70 3.85
347 351 3.521947 AGTATTTTCGGACGGAAGGAG 57.478 47.619 0.00 0.00 35.70 3.69
348 352 3.007182 ACAAGTATTTTCGGACGGAAGGA 59.993 43.478 0.00 0.00 35.70 3.36
349 353 3.332034 ACAAGTATTTTCGGACGGAAGG 58.668 45.455 0.00 0.00 35.70 3.46
350 354 3.991773 TGACAAGTATTTTCGGACGGAAG 59.008 43.478 0.00 0.00 35.70 3.46
351 355 3.992643 TGACAAGTATTTTCGGACGGAA 58.007 40.909 0.00 0.00 0.00 4.30
352 356 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
353 357 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
354 358 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
355 359 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
356 360 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
357 361 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
358 362 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
364 368 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
365 369 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
366 370 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
367 371 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
368 372 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
369 373 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
370 374 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
378 382 9.607333 TGTCTAGATACATCTCCTTTTATCCAT 57.393 33.333 0.00 0.00 38.32 3.41
379 383 9.607333 ATGTCTAGATACATCTCCTTTTATCCA 57.393 33.333 0.00 0.00 35.08 3.41
428 432 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
429 433 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
430 434 9.474920 GAAATACTTGTCATCAAAATGGACAAA 57.525 29.630 7.70 0.00 34.98 2.83
431 435 8.859090 AGAAATACTTGTCATCAAAATGGACAA 58.141 29.630 0.00 0.00 34.59 3.18
432 436 8.298854 CAGAAATACTTGTCATCAAAATGGACA 58.701 33.333 0.00 0.00 33.42 4.02
433 437 7.756722 CCAGAAATACTTGTCATCAAAATGGAC 59.243 37.037 0.00 0.00 33.42 4.02
434 438 7.669304 TCCAGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
435 439 7.756722 GTCCAGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
436 440 7.482743 CGTCCAGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
437 441 7.362056 CCGTCCAGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 32.87 1.82
438 442 6.072728 CCGTCCAGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 32.87 2.44
439 443 5.411361 CCGTCCAGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 32.87 2.69
440 444 4.935205 CCGTCCAGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
441 445 4.221924 TCCGTCCAGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 0.00 3.07
442 446 4.755411 TCCGTCCAGAAATACTTGTCATC 58.245 43.478 0.00 0.00 0.00 2.92
443 447 4.466370 TCTCCGTCCAGAAATACTTGTCAT 59.534 41.667 0.00 0.00 0.00 3.06
444 448 3.830178 TCTCCGTCCAGAAATACTTGTCA 59.170 43.478 0.00 0.00 0.00 3.58
445 449 4.158025 TCTCTCCGTCCAGAAATACTTGTC 59.842 45.833 0.00 0.00 0.00 3.18
446 450 4.087182 TCTCTCCGTCCAGAAATACTTGT 58.913 43.478 0.00 0.00 0.00 3.16
447 451 4.158764 ACTCTCTCCGTCCAGAAATACTTG 59.841 45.833 0.00 0.00 0.00 3.16
448 452 4.345854 ACTCTCTCCGTCCAGAAATACTT 58.654 43.478 0.00 0.00 0.00 2.24
449 453 3.970842 ACTCTCTCCGTCCAGAAATACT 58.029 45.455 0.00 0.00 0.00 2.12
450 454 4.639310 TGTACTCTCTCCGTCCAGAAATAC 59.361 45.833 0.00 0.00 0.00 1.89
451 455 4.851843 TGTACTCTCTCCGTCCAGAAATA 58.148 43.478 0.00 0.00 0.00 1.40
452 456 3.698289 TGTACTCTCTCCGTCCAGAAAT 58.302 45.455 0.00 0.00 0.00 2.17
453 457 3.150458 TGTACTCTCTCCGTCCAGAAA 57.850 47.619 0.00 0.00 0.00 2.52
454 458 2.873094 TGTACTCTCTCCGTCCAGAA 57.127 50.000 0.00 0.00 0.00 3.02
455 459 2.644676 CATGTACTCTCTCCGTCCAGA 58.355 52.381 0.00 0.00 0.00 3.86
456 460 1.066303 GCATGTACTCTCTCCGTCCAG 59.934 57.143 0.00 0.00 0.00 3.86
457 461 1.103803 GCATGTACTCTCTCCGTCCA 58.896 55.000 0.00 0.00 0.00 4.02
458 462 0.386113 GGCATGTACTCTCTCCGTCC 59.614 60.000 0.00 0.00 0.00 4.79
459 463 1.103803 TGGCATGTACTCTCTCCGTC 58.896 55.000 0.00 0.00 0.00 4.79
460 464 1.204941 GTTGGCATGTACTCTCTCCGT 59.795 52.381 0.00 0.00 0.00 4.69
461 465 1.478510 AGTTGGCATGTACTCTCTCCG 59.521 52.381 0.00 0.00 0.00 4.63
462 466 3.618690 AAGTTGGCATGTACTCTCTCC 57.381 47.619 0.00 0.00 0.00 3.71
463 467 3.126000 GCAAAGTTGGCATGTACTCTCTC 59.874 47.826 0.00 0.00 0.00 3.20
464 468 3.077359 GCAAAGTTGGCATGTACTCTCT 58.923 45.455 0.00 0.00 0.00 3.10
465 469 3.477899 GCAAAGTTGGCATGTACTCTC 57.522 47.619 0.00 0.00 0.00 3.20
489 493 5.964887 TTTTGAAAATTCTGCGAACCAAG 57.035 34.783 0.00 0.00 0.00 3.61
527 532 7.938140 TTTATTCAGACTTTATTCCTGTGGG 57.062 36.000 0.00 0.00 0.00 4.61
676 696 7.375808 CCGTTATTATGTGAATTTTGTCGATGG 59.624 37.037 0.00 0.00 0.00 3.51
677 697 7.375808 CCCGTTATTATGTGAATTTTGTCGATG 59.624 37.037 0.00 0.00 0.00 3.84
714 734 7.467267 CGATGAAACAAGTTCCTCTTTTCTTGA 60.467 37.037 10.09 0.00 39.39 3.02
722 742 4.336889 TGACGATGAAACAAGTTCCTCT 57.663 40.909 0.00 0.00 35.12 3.69
723 743 5.613358 AATGACGATGAAACAAGTTCCTC 57.387 39.130 0.00 0.00 35.12 3.71
725 745 5.757886 TGAAATGACGATGAAACAAGTTCC 58.242 37.500 0.00 0.00 35.12 3.62
726 746 7.805071 AGAATGAAATGACGATGAAACAAGTTC 59.195 33.333 0.00 0.00 36.70 3.01
731 752 7.360861 GGTGTAGAATGAAATGACGATGAAACA 60.361 37.037 0.00 0.00 0.00 2.83
740 761 6.992063 ACAGATGGTGTAGAATGAAATGAC 57.008 37.500 0.00 0.00 37.75 3.06
760 782 8.747666 GCTGAGACGTCTTATATTTAGAAACAG 58.252 37.037 21.08 16.91 0.00 3.16
816 1746 7.406620 ACCCAATTGGAATCCTATGAGATAA 57.593 36.000 26.60 0.00 37.39 1.75
817 1747 7.233632 CAACCCAATTGGAATCCTATGAGATA 58.766 38.462 26.60 0.00 37.39 1.98
818 1748 5.937492 ACCCAATTGGAATCCTATGAGAT 57.063 39.130 26.60 0.00 37.39 2.75
819 1749 5.448654 CAACCCAATTGGAATCCTATGAGA 58.551 41.667 26.60 0.00 37.39 3.27
837 1767 2.544903 CGTCAAACCATCAAACCAACCC 60.545 50.000 0.00 0.00 0.00 4.11
841 1771 0.309302 CGCGTCAAACCATCAAACCA 59.691 50.000 0.00 0.00 0.00 3.67
898 1829 2.887152 AGTTGAGATGAGTTGGGTTTGC 59.113 45.455 0.00 0.00 0.00 3.68
903 1834 1.081892 CGCAGTTGAGATGAGTTGGG 58.918 55.000 0.00 0.00 0.00 4.12
1614 2545 1.820481 CGTCCTCGTCCTCCTCCTC 60.820 68.421 0.00 0.00 0.00 3.71
1615 2546 2.272797 CGTCCTCGTCCTCCTCCT 59.727 66.667 0.00 0.00 0.00 3.69
1949 2883 1.201429 TCTCCTTGGTGAGCCCCTTC 61.201 60.000 0.00 0.00 32.22 3.46
2042 2976 3.253432 CGACTAGAGCATACAGTATGGCA 59.747 47.826 20.16 0.00 43.62 4.92
2231 3165 1.066215 CATGTCATGAACGGGGACTCA 60.066 52.381 7.04 0.00 32.84 3.41
2237 3171 1.031571 CACCCCATGTCATGAACGGG 61.032 60.000 19.01 19.01 35.93 5.28
2396 3330 4.654793 TGTGAAACATATGTGTTCGCGCT 61.655 43.478 23.68 0.00 45.67 5.92
2427 3361 1.565390 CCTCTCACAGGGGATGGCAA 61.565 60.000 0.00 0.00 38.91 4.52
2435 3369 1.611851 ACTGCCTCCTCTCACAGGG 60.612 63.158 0.00 0.00 43.67 4.45
2507 3441 0.309302 TGGTTCGTGTGGATTTTGCG 59.691 50.000 0.00 0.00 0.00 4.85
2707 3641 5.755375 CCCGATACAATACATGGATAGCATC 59.245 44.000 0.00 0.00 30.51 3.91
2757 3691 2.948315 GCAAGCCCTCTAAGATTTCCAG 59.052 50.000 0.00 0.00 0.00 3.86
2816 3750 6.367374 TCACAATCACAATACAGTAAGGGA 57.633 37.500 0.00 0.00 0.00 4.20
2821 3755 8.673711 GCCTTAAATCACAATCACAATACAGTA 58.326 33.333 0.00 0.00 0.00 2.74
2822 3756 7.394359 AGCCTTAAATCACAATCACAATACAGT 59.606 33.333 0.00 0.00 0.00 3.55
2823 3757 7.765307 AGCCTTAAATCACAATCACAATACAG 58.235 34.615 0.00 0.00 0.00 2.74
2824 3758 7.148086 GGAGCCTTAAATCACAATCACAATACA 60.148 37.037 0.00 0.00 0.00 2.29
2825 3759 7.196331 GGAGCCTTAAATCACAATCACAATAC 58.804 38.462 0.00 0.00 0.00 1.89
2826 3760 6.321181 GGGAGCCTTAAATCACAATCACAATA 59.679 38.462 0.00 0.00 0.00 1.90
2827 3761 5.127682 GGGAGCCTTAAATCACAATCACAAT 59.872 40.000 0.00 0.00 0.00 2.71
2828 3762 4.462483 GGGAGCCTTAAATCACAATCACAA 59.538 41.667 0.00 0.00 0.00 3.33
2829 3763 4.016444 GGGAGCCTTAAATCACAATCACA 58.984 43.478 0.00 0.00 0.00 3.58
2830 3764 4.273318 AGGGAGCCTTAAATCACAATCAC 58.727 43.478 0.00 0.00 0.00 3.06
2831 3765 4.591321 AGGGAGCCTTAAATCACAATCA 57.409 40.909 0.00 0.00 0.00 2.57
2832 3766 6.038714 CACTAAGGGAGCCTTAAATCACAATC 59.961 42.308 0.00 0.00 44.32 2.67
2833 3767 5.888161 CACTAAGGGAGCCTTAAATCACAAT 59.112 40.000 0.00 0.00 44.32 2.71
2834 3768 5.222048 ACACTAAGGGAGCCTTAAATCACAA 60.222 40.000 0.00 0.00 44.32 3.33
2835 3769 4.288626 ACACTAAGGGAGCCTTAAATCACA 59.711 41.667 0.00 0.00 44.32 3.58
2836 3770 4.844884 ACACTAAGGGAGCCTTAAATCAC 58.155 43.478 0.00 0.00 44.32 3.06
2837 3771 6.824958 ATACACTAAGGGAGCCTTAAATCA 57.175 37.500 0.00 0.00 44.32 2.57
2838 3772 7.012421 CACAATACACTAAGGGAGCCTTAAATC 59.988 40.741 0.00 0.00 44.32 2.17
2839 3773 6.828785 CACAATACACTAAGGGAGCCTTAAAT 59.171 38.462 0.00 0.00 44.32 1.40
2840 3774 6.013206 TCACAATACACTAAGGGAGCCTTAAA 60.013 38.462 0.00 0.00 44.32 1.52
2841 3775 5.486063 TCACAATACACTAAGGGAGCCTTAA 59.514 40.000 0.00 0.00 44.32 1.85
2842 3776 5.027460 TCACAATACACTAAGGGAGCCTTA 58.973 41.667 0.00 0.00 42.74 2.69
2843 3777 3.844211 TCACAATACACTAAGGGAGCCTT 59.156 43.478 0.00 0.00 46.63 4.35
2844 3778 3.450904 TCACAATACACTAAGGGAGCCT 58.549 45.455 0.00 0.00 33.87 4.58
2845 3779 3.906720 TCACAATACACTAAGGGAGCC 57.093 47.619 0.00 0.00 0.00 4.70
2846 3780 7.011482 CAGTAAATCACAATACACTAAGGGAGC 59.989 40.741 0.00 0.00 0.00 4.70
2847 3781 8.258007 TCAGTAAATCACAATACACTAAGGGAG 58.742 37.037 0.00 0.00 0.00 4.30
2848 3782 8.141298 TCAGTAAATCACAATACACTAAGGGA 57.859 34.615 0.00 0.00 0.00 4.20
2849 3783 8.964476 ATCAGTAAATCACAATACACTAAGGG 57.036 34.615 0.00 0.00 0.00 3.95
2976 3910 9.838339 TTTCTAATATTCAGTTCAGGGAGATTC 57.162 33.333 0.00 0.00 0.00 2.52
2980 3914 7.338710 TGGTTTCTAATATTCAGTTCAGGGAG 58.661 38.462 0.00 0.00 0.00 4.30
2988 3922 8.579850 TGCATTTCTGGTTTCTAATATTCAGT 57.420 30.769 0.00 0.00 0.00 3.41
3242 4179 4.989279 ATGTGCTACATGAATCCAAACC 57.011 40.909 0.00 0.00 37.45 3.27
3354 4291 0.811281 CCCCTGCGTTTTCAGAATCC 59.189 55.000 0.00 0.00 36.19 3.01
3359 4296 1.160137 CTTCTCCCCTGCGTTTTCAG 58.840 55.000 0.00 0.00 0.00 3.02
3361 4298 2.074576 GTACTTCTCCCCTGCGTTTTC 58.925 52.381 0.00 0.00 0.00 2.29
3364 4301 1.349067 AAGTACTTCTCCCCTGCGTT 58.651 50.000 1.12 0.00 0.00 4.84
3438 4375 7.921214 CCGCAGATATATCATAACCTCGTTATT 59.079 37.037 15.08 0.00 36.70 1.40
3518 4460 3.261390 CCTGATCAAATGGGGCTCAAAAA 59.739 43.478 0.00 0.00 0.00 1.94
3556 4498 5.163488 GGCCAAACACTACCAGTTTTACTTT 60.163 40.000 0.00 0.00 37.10 2.66
3572 4514 3.433306 ACACATAGCTTAGGCCAAACA 57.567 42.857 5.01 0.00 39.73 2.83
3573 4515 3.756434 TCAACACATAGCTTAGGCCAAAC 59.244 43.478 5.01 0.00 39.73 2.93
3574 4516 4.027674 TCAACACATAGCTTAGGCCAAA 57.972 40.909 5.01 0.00 39.73 3.28
3575 4517 3.712016 TCAACACATAGCTTAGGCCAA 57.288 42.857 5.01 0.00 39.73 4.52
3614 4556 4.249638 TCATACCCAAATAAGCAGCCTT 57.750 40.909 0.00 0.00 35.05 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.