Multiple sequence alignment - TraesCS7A01G341600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G341600 chr7A 100.000 2890 0 0 1 2890 501590084 501587195 0.000000e+00 5337.0
1 TraesCS7A01G341600 chr7B 88.763 1148 76 24 859 1971 448735224 448736353 0.000000e+00 1356.0
2 TraesCS7A01G341600 chr7B 87.361 807 60 22 2090 2890 448736370 448737140 0.000000e+00 887.0
3 TraesCS7A01G341600 chr7B 88.235 51 6 0 1422 1472 58788382 58788332 8.650000e-06 62.1
4 TraesCS7A01G341600 chr7D 88.462 806 56 21 2090 2890 431337744 431338517 0.000000e+00 939.0
5 TraesCS7A01G341600 chr7D 91.228 570 29 11 856 1423 431336660 431337210 0.000000e+00 756.0
6 TraesCS7A01G341600 chr7D 93.668 458 21 2 1515 1971 431337276 431337726 0.000000e+00 678.0
7 TraesCS7A01G341600 chr7D 83.364 535 72 16 147 671 431335591 431336118 2.010000e-131 479.0
8 TraesCS7A01G341600 chr7D 89.683 126 7 6 1970 2092 431337595 431337717 3.860000e-34 156.0
9 TraesCS7A01G341600 chr7D 87.879 132 13 3 710 841 431336107 431336235 4.990000e-33 152.0
10 TraesCS7A01G341600 chr2B 99.320 147 1 0 1 147 178453801 178453655 1.710000e-67 267.0
11 TraesCS7A01G341600 chr2B 98.649 148 2 0 1 148 622659859 622660006 2.210000e-66 263.0
12 TraesCS7A01G341600 chr2B 94.611 167 8 1 1 167 11278967 11279132 1.030000e-64 257.0
13 TraesCS7A01G341600 chr3A 98.658 149 2 0 1 149 100874900 100874752 6.140000e-67 265.0
14 TraesCS7A01G341600 chr4B 98.649 148 2 0 1 148 508524043 508524190 2.210000e-66 263.0
15 TraesCS7A01G341600 chr4B 82.569 109 14 4 571 674 60326769 60326661 1.100000e-14 91.6
16 TraesCS7A01G341600 chr4B 81.188 101 17 2 598 696 23662948 23662848 2.390000e-11 80.5
17 TraesCS7A01G341600 chr4B 85.714 77 7 2 575 647 489296454 489296378 8.590000e-11 78.7
18 TraesCS7A01G341600 chr4B 93.023 43 3 0 1415 1457 463582519 463582561 2.400000e-06 63.9
19 TraesCS7A01G341600 chr4A 98.649 148 2 0 1 148 721825865 721826012 2.210000e-66 263.0
20 TraesCS7A01G341600 chr4A 83.696 92 13 1 576 665 54407597 54407506 5.130000e-13 86.1
21 TraesCS7A01G341600 chr5B 98.639 147 2 0 1 147 116660813 116660959 7.940000e-66 261.0
22 TraesCS7A01G341600 chr5B 81.522 92 14 2 570 658 441645722 441645813 3.990000e-09 73.1
23 TraesCS7A01G341600 chr3B 98.013 151 2 1 1 150 690453837 690453687 7.940000e-66 261.0
24 TraesCS7A01G341600 chr3B 85.106 94 11 2 566 656 647906938 647907031 3.070000e-15 93.5
25 TraesCS7A01G341600 chr2A 98.000 150 3 0 1 150 519548891 519549040 7.940000e-66 261.0
26 TraesCS7A01G341600 chr6D 82.569 109 12 5 571 674 429370509 429370403 3.970000e-14 89.8
27 TraesCS7A01G341600 chr6D 100.000 36 0 0 1422 1457 332955993 332956028 1.860000e-07 67.6
28 TraesCS7A01G341600 chr5A 81.000 100 15 4 569 665 283309057 283309155 3.090000e-10 76.8
29 TraesCS7A01G341600 chr5A 95.000 40 2 0 1421 1460 360079170 360079131 2.400000e-06 63.9
30 TraesCS7A01G341600 chr3D 79.646 113 18 4 565 674 38408432 38408322 3.090000e-10 76.8
31 TraesCS7A01G341600 chr4D 97.436 39 1 0 1419 1457 453044639 453044677 1.860000e-07 67.6
32 TraesCS7A01G341600 chr4D 93.023 43 3 0 1415 1457 377828334 377828376 2.400000e-06 63.9
33 TraesCS7A01G341600 chr1B 97.436 39 1 0 1422 1460 57002548 57002510 1.860000e-07 67.6
34 TraesCS7A01G341600 chr1A 97.436 39 1 0 1422 1460 36568608 36568570 1.860000e-07 67.6
35 TraesCS7A01G341600 chr1A 86.792 53 5 2 1408 1460 58710056 58710006 1.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G341600 chr7A 501587195 501590084 2889 True 5337.000000 5337 100.000000 1 2890 1 chr7A.!!$R1 2889
1 TraesCS7A01G341600 chr7B 448735224 448737140 1916 False 1121.500000 1356 88.062000 859 2890 2 chr7B.!!$F1 2031
2 TraesCS7A01G341600 chr7D 431335591 431338517 2926 False 526.666667 939 89.047333 147 2890 6 chr7D.!!$F1 2743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 484 0.032615 TTTTGTGGTGCAGAGGGGTT 60.033 50.0 0.0 0.0 0.0 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 2837 0.036765 AATCGTGCCCTTTAGCGTGA 60.037 50.0 0.0 0.0 34.65 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 9.807386 GTATAATGTGTTAATCCAAATAGACGC 57.193 33.333 0.00 0.00 0.00 5.19
85 86 4.850859 TGTGTTAATCCAAATAGACGCG 57.149 40.909 3.53 3.53 0.00 6.01
86 87 4.247258 TGTGTTAATCCAAATAGACGCGT 58.753 39.130 13.85 13.85 0.00 6.01
87 88 4.092237 TGTGTTAATCCAAATAGACGCGTG 59.908 41.667 20.70 0.00 0.00 5.34
88 89 4.092383 GTGTTAATCCAAATAGACGCGTGT 59.908 41.667 20.70 17.60 0.00 4.49
89 90 4.691685 TGTTAATCCAAATAGACGCGTGTT 59.308 37.500 20.70 7.39 0.00 3.32
90 91 3.740044 AATCCAAATAGACGCGTGTTG 57.260 42.857 20.70 15.05 0.00 3.33
91 92 0.793861 TCCAAATAGACGCGTGTTGC 59.206 50.000 20.70 0.63 41.47 4.17
92 93 0.515127 CCAAATAGACGCGTGTTGCA 59.485 50.000 20.70 0.00 46.97 4.08
93 94 1.591248 CAAATAGACGCGTGTTGCAC 58.409 50.000 20.70 0.00 46.97 4.57
110 111 3.369835 GCACGTGCACACTTATTAGTC 57.630 47.619 34.52 0.00 41.59 2.59
111 112 2.093783 GCACGTGCACACTTATTAGTCC 59.906 50.000 34.52 0.00 41.59 3.85
112 113 3.322369 CACGTGCACACTTATTAGTCCA 58.678 45.455 18.64 0.00 30.26 4.02
113 114 3.743911 CACGTGCACACTTATTAGTCCAA 59.256 43.478 18.64 0.00 30.26 3.53
114 115 4.212425 CACGTGCACACTTATTAGTCCAAA 59.788 41.667 18.64 0.00 30.26 3.28
115 116 5.001232 ACGTGCACACTTATTAGTCCAAAT 58.999 37.500 18.64 0.00 30.26 2.32
116 117 6.091577 CACGTGCACACTTATTAGTCCAAATA 59.908 38.462 18.64 0.00 30.26 1.40
117 118 6.312918 ACGTGCACACTTATTAGTCCAAATAG 59.687 38.462 18.64 0.00 30.26 1.73
118 119 6.533723 CGTGCACACTTATTAGTCCAAATAGA 59.466 38.462 18.64 0.00 30.26 1.98
119 120 7.464178 CGTGCACACTTATTAGTCCAAATAGAC 60.464 40.741 18.64 0.00 37.01 2.59
120 121 6.533723 TGCACACTTATTAGTCCAAATAGACG 59.466 38.462 0.00 0.00 41.83 4.18
121 122 6.534079 GCACACTTATTAGTCCAAATAGACGT 59.466 38.462 0.00 0.00 41.83 4.34
122 123 7.464178 GCACACTTATTAGTCCAAATAGACGTG 60.464 40.741 0.00 0.00 41.83 4.49
123 124 7.544566 CACACTTATTAGTCCAAATAGACGTGT 59.455 37.037 0.00 0.00 41.83 4.49
124 125 7.544566 ACACTTATTAGTCCAAATAGACGTGTG 59.455 37.037 0.00 0.00 41.83 3.82
125 126 7.544566 CACTTATTAGTCCAAATAGACGTGTGT 59.455 37.037 0.00 0.00 41.83 3.72
126 127 8.092687 ACTTATTAGTCCAAATAGACGTGTGTT 58.907 33.333 0.00 0.00 41.83 3.32
127 128 6.721571 ATTAGTCCAAATAGACGTGTGTTG 57.278 37.500 0.00 0.00 41.83 3.33
128 129 2.806244 AGTCCAAATAGACGTGTGTTGC 59.194 45.455 0.00 0.00 41.83 4.17
129 130 2.546368 GTCCAAATAGACGTGTGTTGCA 59.454 45.455 0.00 0.00 0.00 4.08
130 131 2.546368 TCCAAATAGACGTGTGTTGCAC 59.454 45.455 0.00 0.00 44.36 4.57
159 160 9.298113 GCATATTTACTAGTTATGTTTAACGCG 57.702 33.333 3.53 3.53 42.14 6.01
198 199 0.931468 TGATTAGTCCGGGAGAGGGA 59.069 55.000 0.00 0.00 0.00 4.20
209 210 1.353091 GGAGAGGGACTTTGAGTGGT 58.647 55.000 0.00 0.00 41.55 4.16
210 211 1.276705 GGAGAGGGACTTTGAGTGGTC 59.723 57.143 0.00 0.00 41.55 4.02
233 235 2.204461 TTGTCGGAGTCCTTGGCGA 61.204 57.895 7.77 0.00 0.00 5.54
246 248 0.832135 TTGGCGAAGGTCTGGACTCT 60.832 55.000 0.67 0.00 0.00 3.24
250 252 0.612174 CGAAGGTCTGGACTCTCCCA 60.612 60.000 0.67 0.00 35.03 4.37
264 266 3.330998 ACTCTCCCAAAACCTTTCCCTAG 59.669 47.826 0.00 0.00 0.00 3.02
289 291 2.966309 GCCGGTTTGCAGGAACTCG 61.966 63.158 1.90 3.91 34.60 4.18
292 294 1.228154 GGTTTGCAGGAACTCGGGT 60.228 57.895 1.52 0.00 34.60 5.28
296 298 2.045926 GCAGGAACTCGGGTGCAT 60.046 61.111 0.00 0.00 34.60 3.96
297 299 2.401766 GCAGGAACTCGGGTGCATG 61.402 63.158 2.92 2.92 34.60 4.06
307 309 1.278985 TCGGGTGCATGAAACTCATCT 59.721 47.619 0.00 0.00 34.28 2.90
316 324 4.788840 GCATGAAACTCATCTGTATGCAGC 60.789 45.833 5.85 0.00 42.29 5.25
317 325 2.931969 TGAAACTCATCTGTATGCAGCG 59.068 45.455 5.85 0.00 42.29 5.18
318 326 2.680312 AACTCATCTGTATGCAGCGT 57.320 45.000 5.85 0.00 42.29 5.07
319 327 2.215907 ACTCATCTGTATGCAGCGTC 57.784 50.000 5.85 0.00 42.29 5.19
321 329 0.871592 TCATCTGTATGCAGCGTCGC 60.872 55.000 9.80 9.80 42.29 5.19
329 337 2.039974 TGCAGCGTCGCATTGGATT 61.040 52.632 21.09 0.00 36.86 3.01
386 394 6.952935 TTTGCAAACGTTTTATGACACTTT 57.047 29.167 11.66 0.00 0.00 2.66
387 395 5.940603 TGCAAACGTTTTATGACACTTTG 57.059 34.783 11.66 0.00 0.00 2.77
388 396 4.800993 TGCAAACGTTTTATGACACTTTGG 59.199 37.500 11.66 0.00 0.00 3.28
420 428 6.789959 AGATAGTGAGATGCCCTAACCTATTT 59.210 38.462 0.00 0.00 0.00 1.40
431 439 5.105877 GCCCTAACCTATTTGTTTCAACCTC 60.106 44.000 0.00 0.00 0.00 3.85
449 457 2.370445 CGGGCCATCAAGACCTCCT 61.370 63.158 4.39 0.00 0.00 3.69
476 484 0.032615 TTTTGTGGTGCAGAGGGGTT 60.033 50.000 0.00 0.00 0.00 4.11
482 490 1.498176 GGTGCAGAGGGGTTAAGGGT 61.498 60.000 0.00 0.00 0.00 4.34
483 491 0.404426 GTGCAGAGGGGTTAAGGGTT 59.596 55.000 0.00 0.00 0.00 4.11
485 493 0.696501 GCAGAGGGGTTAAGGGTTGA 59.303 55.000 0.00 0.00 0.00 3.18
517 525 0.179045 CTTTAGTGCCCCCGATCAGG 60.179 60.000 0.00 0.00 40.63 3.86
535 543 1.527380 GGCGACCACACTGGGAAAA 60.527 57.895 0.00 0.00 43.37 2.29
543 551 4.512484 ACCACACTGGGAAAACAATTTTG 58.488 39.130 0.00 0.00 43.37 2.44
544 552 4.019771 ACCACACTGGGAAAACAATTTTGT 60.020 37.500 0.00 0.00 43.37 2.83
545 553 4.570369 CCACACTGGGAAAACAATTTTGTC 59.430 41.667 0.00 0.00 35.39 3.18
546 554 5.174395 CACACTGGGAAAACAATTTTGTCA 58.826 37.500 0.00 0.00 41.31 3.58
547 555 5.816777 CACACTGGGAAAACAATTTTGTCAT 59.183 36.000 0.00 0.00 41.31 3.06
548 556 6.018832 CACACTGGGAAAACAATTTTGTCATC 60.019 38.462 0.00 0.00 41.31 2.92
550 558 6.538021 CACTGGGAAAACAATTTTGTCATCAA 59.462 34.615 0.00 0.00 41.31 2.57
551 559 6.538381 ACTGGGAAAACAATTTTGTCATCAAC 59.462 34.615 0.00 0.00 41.31 3.18
559 567 5.467399 ACAATTTTGTCATCAACATTGCCTG 59.533 36.000 15.18 0.10 46.72 4.85
567 575 8.065473 TGTCATCAACATTGCCTGTTATTTAT 57.935 30.769 1.84 0.00 46.43 1.40
573 581 7.180051 TCAACATTGCCTGTTATTTATTCCCTT 59.820 33.333 1.84 0.00 46.43 3.95
575 583 5.828299 TTGCCTGTTATTTATTCCCTTCG 57.172 39.130 0.00 0.00 0.00 3.79
591 599 7.605410 TTCCCTTCGTTCACAAATATAAGAC 57.395 36.000 0.00 0.00 0.00 3.01
592 600 6.942976 TCCCTTCGTTCACAAATATAAGACT 58.057 36.000 0.00 0.00 0.00 3.24
593 601 7.039882 TCCCTTCGTTCACAAATATAAGACTC 58.960 38.462 0.00 0.00 0.00 3.36
594 602 7.042335 CCCTTCGTTCACAAATATAAGACTCT 58.958 38.462 0.00 0.00 0.00 3.24
596 604 9.021863 CCTTCGTTCACAAATATAAGACTCTAC 57.978 37.037 0.00 0.00 0.00 2.59
597 605 9.790389 CTTCGTTCACAAATATAAGACTCTACT 57.210 33.333 0.00 0.00 0.00 2.57
658 667 8.403236 GTGTGTTTGTTCACTTATTTTAGTCCT 58.597 33.333 0.00 0.00 38.90 3.85
659 668 8.962679 TGTGTTTGTTCACTTATTTTAGTCCTT 58.037 29.630 0.00 0.00 38.90 3.36
777 786 6.110707 ACGGAAGAGTACTTTGTCTCAAAAA 58.889 36.000 0.00 0.00 36.39 1.94
798 807 9.158233 CAAAAATATCAAAAATGAGCACTCCAT 57.842 29.630 0.00 0.00 0.00 3.41
806 815 8.991026 TCAAAAATGAGCACTCCATAAATTTTG 58.009 29.630 0.00 0.00 34.18 2.44
808 817 9.558396 AAAAATGAGCACTCCATAAATTTTGAA 57.442 25.926 0.00 0.00 0.00 2.69
809 818 8.538409 AAATGAGCACTCCATAAATTTTGAAC 57.462 30.769 0.00 0.00 0.00 3.18
810 819 6.899393 TGAGCACTCCATAAATTTTGAACT 57.101 33.333 0.00 0.00 0.00 3.01
811 820 6.680810 TGAGCACTCCATAAATTTTGAACTG 58.319 36.000 0.00 0.00 0.00 3.16
814 823 7.373493 AGCACTCCATAAATTTTGAACTGAAG 58.627 34.615 0.00 0.00 0.00 3.02
815 824 6.089954 GCACTCCATAAATTTTGAACTGAAGC 59.910 38.462 0.00 0.00 0.00 3.86
816 825 7.373493 CACTCCATAAATTTTGAACTGAAGCT 58.627 34.615 0.00 0.00 0.00 3.74
818 827 8.515414 ACTCCATAAATTTTGAACTGAAGCTAC 58.485 33.333 0.00 0.00 0.00 3.58
847 868 1.341383 TGGAACGGAGGGGAGTACTAC 60.341 57.143 0.00 0.00 0.00 2.73
854 875 3.631227 CGGAGGGGAGTACTACTTTGTAG 59.369 52.174 4.77 3.49 0.00 2.74
862 1281 7.093596 GGGGAGTACTACTTTGTAGTAACACAT 60.094 40.741 16.20 4.31 36.46 3.21
939 1358 1.777878 TCTCTCCTCTATCTCCGCCTT 59.222 52.381 0.00 0.00 0.00 4.35
1038 1457 3.345808 GTGCCGCTTCTTCGTGCA 61.346 61.111 0.00 0.00 34.84 4.57
1080 1499 4.096003 CAGATCAACCCCCGCCGT 62.096 66.667 0.00 0.00 0.00 5.68
1270 1698 4.748892 TGCTTATCTTCAGACACAGTAGC 58.251 43.478 0.00 0.00 0.00 3.58
1323 1754 8.567948 CCTGTCTTTGTAAATGAATTGTACTGT 58.432 33.333 0.00 0.00 31.35 3.55
1335 1766 3.746045 TTGTACTGTCCAGTGAGTTCC 57.254 47.619 10.15 0.00 42.52 3.62
1354 1785 1.202065 CCAAACCATGATTCGCGAGTG 60.202 52.381 9.53 7.35 0.00 3.51
1423 1854 6.074782 CGCGAGGAGTTCTCAAATTTATCTAC 60.075 42.308 0.00 0.00 42.55 2.59
1425 1856 7.168469 GCGAGGAGTTCTCAAATTTATCTACTC 59.832 40.741 0.00 11.37 42.55 2.59
1428 1859 7.797062 GGAGTTCTCAAATTTATCTACTCCCT 58.203 38.462 20.43 0.51 42.81 4.20
1429 1860 7.929245 GGAGTTCTCAAATTTATCTACTCCCTC 59.071 40.741 20.43 7.25 42.81 4.30
1430 1861 7.797062 AGTTCTCAAATTTATCTACTCCCTCC 58.203 38.462 0.00 0.00 0.00 4.30
1431 1862 6.406692 TCTCAAATTTATCTACTCCCTCCG 57.593 41.667 0.00 0.00 0.00 4.63
1432 1863 6.134055 TCTCAAATTTATCTACTCCCTCCGA 58.866 40.000 0.00 0.00 0.00 4.55
1434 1865 6.994221 TCAAATTTATCTACTCCCTCCGATC 58.006 40.000 0.00 0.00 0.00 3.69
1435 1866 6.014499 TCAAATTTATCTACTCCCTCCGATCC 60.014 42.308 0.00 0.00 0.00 3.36
1436 1867 4.464652 TTTATCTACTCCCTCCGATCCA 57.535 45.455 0.00 0.00 0.00 3.41
1437 1868 4.676799 TTATCTACTCCCTCCGATCCAT 57.323 45.455 0.00 0.00 0.00 3.41
1438 1869 5.791303 TTATCTACTCCCTCCGATCCATA 57.209 43.478 0.00 0.00 0.00 2.74
1439 1870 4.890499 ATCTACTCCCTCCGATCCATAT 57.110 45.455 0.00 0.00 0.00 1.78
1440 1871 4.676799 TCTACTCCCTCCGATCCATATT 57.323 45.455 0.00 0.00 0.00 1.28
1442 1873 5.507637 TCTACTCCCTCCGATCCATATTAC 58.492 45.833 0.00 0.00 0.00 1.89
1443 1874 4.405756 ACTCCCTCCGATCCATATTACT 57.594 45.455 0.00 0.00 0.00 2.24
1444 1875 4.753186 ACTCCCTCCGATCCATATTACTT 58.247 43.478 0.00 0.00 0.00 2.24
1445 1876 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
1446 1877 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
1447 1878 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
1448 1879 4.486090 CCTCCGATCCATATTACTTGTCG 58.514 47.826 0.00 0.00 0.00 4.35
1449 1880 3.909430 TCCGATCCATATTACTTGTCGC 58.091 45.455 0.00 0.00 0.00 5.19
1450 1881 3.319689 TCCGATCCATATTACTTGTCGCA 59.680 43.478 0.00 0.00 0.00 5.10
1451 1882 3.675225 CCGATCCATATTACTTGTCGCAG 59.325 47.826 0.00 0.00 0.00 5.18
1452 1883 3.121944 CGATCCATATTACTTGTCGCAGC 59.878 47.826 0.00 0.00 0.00 5.25
1453 1884 3.819564 TCCATATTACTTGTCGCAGCT 57.180 42.857 0.00 0.00 0.00 4.24
1454 1885 4.137116 TCCATATTACTTGTCGCAGCTT 57.863 40.909 0.00 0.00 0.00 3.74
1455 1886 4.513442 TCCATATTACTTGTCGCAGCTTT 58.487 39.130 0.00 0.00 0.00 3.51
1456 1887 5.666462 TCCATATTACTTGTCGCAGCTTTA 58.334 37.500 0.00 0.00 0.00 1.85
1457 1888 6.110033 TCCATATTACTTGTCGCAGCTTTAA 58.890 36.000 0.00 0.00 0.00 1.52
1460 1891 8.223769 CCATATTACTTGTCGCAGCTTTAATAG 58.776 37.037 0.00 0.00 0.00 1.73
1461 1892 8.765219 CATATTACTTGTCGCAGCTTTAATAGT 58.235 33.333 0.00 0.00 0.00 2.12
1462 1893 9.976511 ATATTACTTGTCGCAGCTTTAATAGTA 57.023 29.630 0.00 0.00 0.00 1.82
1463 1894 7.515957 TTACTTGTCGCAGCTTTAATAGTAC 57.484 36.000 0.00 0.00 0.00 2.73
1464 1895 5.721232 ACTTGTCGCAGCTTTAATAGTACT 58.279 37.500 0.00 0.00 0.00 2.73
1465 1896 6.860080 ACTTGTCGCAGCTTTAATAGTACTA 58.140 36.000 4.77 4.77 0.00 1.82
1466 1897 6.750963 ACTTGTCGCAGCTTTAATAGTACTAC 59.249 38.462 4.31 0.00 0.00 2.73
1468 1899 6.623486 TGTCGCAGCTTTAATAGTACTACAA 58.377 36.000 4.31 0.00 0.00 2.41
1469 1900 6.529125 TGTCGCAGCTTTAATAGTACTACAAC 59.471 38.462 4.31 0.00 0.00 3.32
1470 1901 6.750963 GTCGCAGCTTTAATAGTACTACAACT 59.249 38.462 4.31 0.00 0.00 3.16
1471 1902 7.275123 GTCGCAGCTTTAATAGTACTACAACTT 59.725 37.037 4.31 0.00 0.00 2.66
1473 1904 9.079833 CGCAGCTTTAATAGTACTACAACTTTA 57.920 33.333 4.31 0.00 0.00 1.85
1509 1940 4.301072 ACTGCTTGCATAAGGGTTAAGA 57.699 40.909 0.00 0.00 34.40 2.10
1514 1945 4.792068 CTTGCATAAGGGTTAAGATGGGA 58.208 43.478 0.00 0.00 0.00 4.37
1515 1946 5.388654 CTTGCATAAGGGTTAAGATGGGAT 58.611 41.667 0.00 0.00 0.00 3.85
1516 1947 4.728772 TGCATAAGGGTTAAGATGGGATG 58.271 43.478 0.00 0.00 0.00 3.51
1616 2063 5.964958 ACTTTATGACTTGTGGATTGTGG 57.035 39.130 0.00 0.00 0.00 4.17
1623 2070 3.343617 ACTTGTGGATTGTGGTTATCGG 58.656 45.455 0.00 0.00 0.00 4.18
1640 2087 2.569134 GCGAAGTCGTCAGGAGCT 59.431 61.111 2.25 0.00 42.22 4.09
1642 2089 1.226156 CGAAGTCGTCAGGAGCTCG 60.226 63.158 7.83 0.00 34.11 5.03
1657 2104 1.737793 AGCTCGCTTTTACCATTTCGG 59.262 47.619 0.00 0.00 42.50 4.30
1787 2234 2.217106 TGGTGGGACCATGGATACG 58.783 57.895 21.47 0.00 44.79 3.06
1829 2276 2.503331 CAGTACTGGCATTGTTGTGGA 58.497 47.619 15.49 0.00 0.00 4.02
1909 2356 9.078990 TGACTAAATATCTGGATCGTTATCTGT 57.921 33.333 0.00 0.00 32.29 3.41
1910 2357 9.562583 GACTAAATATCTGGATCGTTATCTGTC 57.437 37.037 0.00 0.00 32.29 3.51
1911 2358 8.524487 ACTAAATATCTGGATCGTTATCTGTCC 58.476 37.037 0.00 0.00 32.29 4.02
1912 2359 6.918067 AATATCTGGATCGTTATCTGTCCA 57.082 37.500 0.00 0.00 38.37 4.02
1913 2360 7.487822 AATATCTGGATCGTTATCTGTCCAT 57.512 36.000 0.00 0.00 39.81 3.41
1914 2361 5.815233 ATCTGGATCGTTATCTGTCCATT 57.185 39.130 0.00 0.00 39.81 3.16
1915 2362 5.201713 TCTGGATCGTTATCTGTCCATTC 57.798 43.478 0.00 0.00 39.81 2.67
1916 2363 4.895889 TCTGGATCGTTATCTGTCCATTCT 59.104 41.667 0.00 0.00 39.81 2.40
1917 2364 5.010112 TCTGGATCGTTATCTGTCCATTCTC 59.990 44.000 0.00 0.00 39.81 2.87
1918 2365 4.039245 TGGATCGTTATCTGTCCATTCTCC 59.961 45.833 0.00 0.00 35.91 3.71
1919 2366 3.710326 TCGTTATCTGTCCATTCTCCG 57.290 47.619 0.00 0.00 0.00 4.63
1920 2367 3.021695 TCGTTATCTGTCCATTCTCCGT 58.978 45.455 0.00 0.00 0.00 4.69
1921 2368 3.446161 TCGTTATCTGTCCATTCTCCGTT 59.554 43.478 0.00 0.00 0.00 4.44
1922 2369 3.551890 CGTTATCTGTCCATTCTCCGTTG 59.448 47.826 0.00 0.00 0.00 4.10
1923 2370 4.504858 GTTATCTGTCCATTCTCCGTTGT 58.495 43.478 0.00 0.00 0.00 3.32
1924 2371 2.455674 TCTGTCCATTCTCCGTTGTG 57.544 50.000 0.00 0.00 0.00 3.33
1925 2372 0.798776 CTGTCCATTCTCCGTTGTGC 59.201 55.000 0.00 0.00 0.00 4.57
1926 2373 0.396435 TGTCCATTCTCCGTTGTGCT 59.604 50.000 0.00 0.00 0.00 4.40
1927 2374 1.079503 GTCCATTCTCCGTTGTGCTC 58.920 55.000 0.00 0.00 0.00 4.26
1928 2375 0.976641 TCCATTCTCCGTTGTGCTCT 59.023 50.000 0.00 0.00 0.00 4.09
1929 2376 1.347707 TCCATTCTCCGTTGTGCTCTT 59.652 47.619 0.00 0.00 0.00 2.85
1930 2377 1.466167 CCATTCTCCGTTGTGCTCTTG 59.534 52.381 0.00 0.00 0.00 3.02
1931 2378 2.146342 CATTCTCCGTTGTGCTCTTGT 58.854 47.619 0.00 0.00 0.00 3.16
1932 2379 1.581934 TTCTCCGTTGTGCTCTTGTG 58.418 50.000 0.00 0.00 0.00 3.33
1933 2380 0.249868 TCTCCGTTGTGCTCTTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
1934 2381 0.532862 CTCCGTTGTGCTCTTGTGGT 60.533 55.000 0.00 0.00 0.00 4.16
1935 2382 0.107410 TCCGTTGTGCTCTTGTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
1936 2383 0.307760 CCGTTGTGCTCTTGTGGTTC 59.692 55.000 0.00 0.00 0.00 3.62
1937 2384 1.299541 CGTTGTGCTCTTGTGGTTCT 58.700 50.000 0.00 0.00 0.00 3.01
1938 2385 2.479837 CGTTGTGCTCTTGTGGTTCTA 58.520 47.619 0.00 0.00 0.00 2.10
1939 2386 2.221055 CGTTGTGCTCTTGTGGTTCTAC 59.779 50.000 0.00 0.00 0.00 2.59
1940 2387 3.467803 GTTGTGCTCTTGTGGTTCTACT 58.532 45.455 0.00 0.00 0.00 2.57
1941 2388 3.838244 TGTGCTCTTGTGGTTCTACTT 57.162 42.857 0.00 0.00 0.00 2.24
1942 2389 4.150897 TGTGCTCTTGTGGTTCTACTTT 57.849 40.909 0.00 0.00 0.00 2.66
1943 2390 4.523083 TGTGCTCTTGTGGTTCTACTTTT 58.477 39.130 0.00 0.00 0.00 2.27
1944 2391 4.947388 TGTGCTCTTGTGGTTCTACTTTTT 59.053 37.500 0.00 0.00 0.00 1.94
1967 2414 2.024918 CACATGAATAGTGGCCCGC 58.975 57.895 0.00 0.00 33.43 6.13
1968 2415 0.464373 CACATGAATAGTGGCCCGCT 60.464 55.000 0.78 0.78 33.43 5.52
1969 2416 0.464373 ACATGAATAGTGGCCCGCTG 60.464 55.000 7.17 0.00 0.00 5.18
1970 2417 0.179048 CATGAATAGTGGCCCGCTGA 60.179 55.000 7.17 0.00 0.00 4.26
1971 2418 0.107456 ATGAATAGTGGCCCGCTGAG 59.893 55.000 7.17 0.00 0.00 3.35
1972 2419 1.227674 GAATAGTGGCCCGCTGAGG 60.228 63.158 7.17 0.00 40.63 3.86
1973 2420 1.686325 GAATAGTGGCCCGCTGAGGA 61.686 60.000 7.17 0.00 45.00 3.71
1974 2421 1.056700 AATAGTGGCCCGCTGAGGAT 61.057 55.000 7.17 0.00 45.00 3.24
1975 2422 1.476007 ATAGTGGCCCGCTGAGGATC 61.476 60.000 7.17 0.00 45.00 3.36
1976 2423 4.554036 GTGGCCCGCTGAGGATCC 62.554 72.222 2.48 2.48 45.00 3.36
1978 2425 3.564218 GGCCCGCTGAGGATCCAT 61.564 66.667 15.82 0.00 45.00 3.41
1979 2426 2.512896 GCCCGCTGAGGATCCATT 59.487 61.111 15.82 0.00 45.00 3.16
1980 2427 1.152881 GCCCGCTGAGGATCCATTT 60.153 57.895 15.82 0.00 45.00 2.32
1981 2428 1.450531 GCCCGCTGAGGATCCATTTG 61.451 60.000 15.82 2.08 45.00 2.32
1982 2429 0.181114 CCCGCTGAGGATCCATTTGA 59.819 55.000 15.82 0.00 45.00 2.69
1983 2430 1.202855 CCCGCTGAGGATCCATTTGAT 60.203 52.381 15.82 0.00 45.00 2.57
1984 2431 1.878088 CCGCTGAGGATCCATTTGATG 59.122 52.381 15.82 0.00 45.00 3.07
1985 2432 2.569059 CGCTGAGGATCCATTTGATGT 58.431 47.619 15.82 0.00 32.41 3.06
1986 2433 2.947652 CGCTGAGGATCCATTTGATGTT 59.052 45.455 15.82 0.00 32.41 2.71
1987 2434 3.242969 CGCTGAGGATCCATTTGATGTTG 60.243 47.826 15.82 0.00 32.41 3.33
1988 2435 3.067742 GCTGAGGATCCATTTGATGTTGG 59.932 47.826 15.82 0.00 32.41 3.77
1989 2436 4.275810 CTGAGGATCCATTTGATGTTGGT 58.724 43.478 15.82 0.00 32.41 3.67
1990 2437 4.676109 TGAGGATCCATTTGATGTTGGTT 58.324 39.130 15.82 0.00 32.41 3.67
1991 2438 4.463539 TGAGGATCCATTTGATGTTGGTTG 59.536 41.667 15.82 0.00 32.41 3.77
1992 2439 4.419282 AGGATCCATTTGATGTTGGTTGT 58.581 39.130 15.82 0.00 32.41 3.32
1993 2440 5.579047 AGGATCCATTTGATGTTGGTTGTA 58.421 37.500 15.82 0.00 32.41 2.41
1994 2441 5.418840 AGGATCCATTTGATGTTGGTTGTAC 59.581 40.000 15.82 0.00 32.41 2.90
1995 2442 5.394115 GGATCCATTTGATGTTGGTTGTACC 60.394 44.000 6.95 0.00 34.20 3.34
1996 2443 3.504134 TCCATTTGATGTTGGTTGTACCG 59.496 43.478 0.00 0.00 42.58 4.02
1997 2444 3.241701 CATTTGATGTTGGTTGTACCGC 58.758 45.455 0.00 0.00 42.58 5.68
1998 2445 2.264005 TTGATGTTGGTTGTACCGCT 57.736 45.000 0.00 0.00 42.58 5.52
1999 2446 1.518325 TGATGTTGGTTGTACCGCTG 58.482 50.000 0.00 0.00 42.58 5.18
2000 2447 0.168128 GATGTTGGTTGTACCGCTGC 59.832 55.000 0.00 0.00 42.58 5.25
2001 2448 0.250727 ATGTTGGTTGTACCGCTGCT 60.251 50.000 0.00 0.00 42.58 4.24
2002 2449 0.882927 TGTTGGTTGTACCGCTGCTC 60.883 55.000 0.00 0.00 42.58 4.26
2003 2450 1.302192 TTGGTTGTACCGCTGCTCC 60.302 57.895 0.00 0.00 42.58 4.70
2004 2451 2.436115 GGTTGTACCGCTGCTCCC 60.436 66.667 0.00 0.00 0.00 4.30
2005 2452 2.663196 GTTGTACCGCTGCTCCCT 59.337 61.111 0.00 0.00 0.00 4.20
2006 2453 1.448013 GTTGTACCGCTGCTCCCTC 60.448 63.158 0.00 0.00 0.00 4.30
2007 2454 1.911269 TTGTACCGCTGCTCCCTCA 60.911 57.895 0.00 0.00 0.00 3.86
2008 2455 2.167398 TTGTACCGCTGCTCCCTCAC 62.167 60.000 0.00 0.00 0.00 3.51
2009 2456 2.037367 TACCGCTGCTCCCTCACT 59.963 61.111 0.00 0.00 0.00 3.41
2010 2457 2.052690 TACCGCTGCTCCCTCACTC 61.053 63.158 0.00 0.00 0.00 3.51
2011 2458 2.500815 TACCGCTGCTCCCTCACTCT 62.501 60.000 0.00 0.00 0.00 3.24
2012 2459 2.654079 CCGCTGCTCCCTCACTCTT 61.654 63.158 0.00 0.00 0.00 2.85
2013 2460 1.153667 CGCTGCTCCCTCACTCTTC 60.154 63.158 0.00 0.00 0.00 2.87
2014 2461 1.881903 CGCTGCTCCCTCACTCTTCA 61.882 60.000 0.00 0.00 0.00 3.02
2015 2462 0.540923 GCTGCTCCCTCACTCTTCAT 59.459 55.000 0.00 0.00 0.00 2.57
2016 2463 1.759445 GCTGCTCCCTCACTCTTCATA 59.241 52.381 0.00 0.00 0.00 2.15
2017 2464 2.482839 GCTGCTCCCTCACTCTTCATAC 60.483 54.545 0.00 0.00 0.00 2.39
2018 2465 1.751351 TGCTCCCTCACTCTTCATACG 59.249 52.381 0.00 0.00 0.00 3.06
2019 2466 2.025155 GCTCCCTCACTCTTCATACGA 58.975 52.381 0.00 0.00 0.00 3.43
2020 2467 2.625790 GCTCCCTCACTCTTCATACGAT 59.374 50.000 0.00 0.00 0.00 3.73
2021 2468 3.551863 GCTCCCTCACTCTTCATACGATG 60.552 52.174 0.00 0.00 0.00 3.84
2022 2469 3.885901 CTCCCTCACTCTTCATACGATGA 59.114 47.826 0.00 0.00 37.55 2.92
2023 2470 3.632604 TCCCTCACTCTTCATACGATGAC 59.367 47.826 0.00 0.00 39.39 3.06
2024 2471 3.634448 CCCTCACTCTTCATACGATGACT 59.366 47.826 0.00 0.00 39.39 3.41
2025 2472 4.822350 CCCTCACTCTTCATACGATGACTA 59.178 45.833 0.00 0.00 39.39 2.59
2026 2473 5.299531 CCCTCACTCTTCATACGATGACTAA 59.700 44.000 0.00 0.00 39.39 2.24
2027 2474 6.183360 CCCTCACTCTTCATACGATGACTAAA 60.183 42.308 0.00 0.00 39.39 1.85
2028 2475 7.429633 CCTCACTCTTCATACGATGACTAAAT 58.570 38.462 0.00 0.00 39.39 1.40
2029 2476 8.568794 CCTCACTCTTCATACGATGACTAAATA 58.431 37.037 0.00 0.00 39.39 1.40
2030 2477 9.388346 CTCACTCTTCATACGATGACTAAATAC 57.612 37.037 0.00 0.00 39.39 1.89
2031 2478 8.068380 TCACTCTTCATACGATGACTAAATACG 58.932 37.037 0.00 0.00 39.39 3.06
2032 2479 7.856398 CACTCTTCATACGATGACTAAATACGT 59.144 37.037 0.00 0.00 39.39 3.57
2033 2480 8.404000 ACTCTTCATACGATGACTAAATACGTT 58.596 33.333 0.00 0.00 39.39 3.99
2034 2481 9.874215 CTCTTCATACGATGACTAAATACGTTA 57.126 33.333 0.00 0.00 39.39 3.18
2038 2485 9.821662 TCATACGATGACTAAATACGTTATCTG 57.178 33.333 0.00 0.00 38.18 2.90
2039 2486 9.608617 CATACGATGACTAAATACGTTATCTGT 57.391 33.333 0.00 0.00 38.18 3.41
2040 2487 9.823098 ATACGATGACTAAATACGTTATCTGTC 57.177 33.333 0.00 0.00 38.18 3.51
2041 2488 7.137426 ACGATGACTAAATACGTTATCTGTCC 58.863 38.462 0.00 0.00 33.48 4.02
2042 2489 7.136772 CGATGACTAAATACGTTATCTGTCCA 58.863 38.462 0.00 0.00 0.00 4.02
2043 2490 7.808381 CGATGACTAAATACGTTATCTGTCCAT 59.192 37.037 0.00 0.00 0.00 3.41
2044 2491 9.477484 GATGACTAAATACGTTATCTGTCCATT 57.523 33.333 0.00 0.00 0.00 3.16
2045 2492 8.867112 TGACTAAATACGTTATCTGTCCATTC 57.133 34.615 0.00 0.00 0.00 2.67
2283 2764 2.940994 TGCGCTAGGGGCATTAATTA 57.059 45.000 9.73 0.00 46.09 1.40
2306 2787 0.322456 ATTTTGCCACTGCCTAGCGA 60.322 50.000 0.00 0.00 36.33 4.93
2332 2813 3.327757 CCTACCATGATTTAGGCTAGGCA 59.672 47.826 19.70 1.52 0.00 4.75
2339 2820 6.444633 CATGATTTAGGCTAGGCATTCTTTG 58.555 40.000 19.70 4.09 0.00 2.77
2345 2826 1.737838 CTAGGCATTCTTTGGTCGCA 58.262 50.000 0.00 0.00 0.00 5.10
2355 2836 3.259064 TCTTTGGTCGCATAGTGCTTAC 58.741 45.455 0.10 0.00 42.25 2.34
2356 2837 3.056107 TCTTTGGTCGCATAGTGCTTACT 60.056 43.478 0.10 0.00 42.25 2.24
2368 2849 2.000447 GTGCTTACTCACGCTAAAGGG 59.000 52.381 0.00 0.00 0.00 3.95
2376 2857 1.205179 TCACGCTAAAGGGCACGATTA 59.795 47.619 0.00 0.00 0.00 1.75
2394 2875 5.703592 ACGATTATGGCACTAAAGTTTGTCA 59.296 36.000 0.00 0.00 0.00 3.58
2396 2877 7.551262 ACGATTATGGCACTAAAGTTTGTCATA 59.449 33.333 0.00 0.00 38.90 2.15
2450 2931 6.573664 TGTTTTCAGCTACATATTTGCACT 57.426 33.333 0.00 0.00 0.00 4.40
2513 2994 3.567478 AGGTTGGATGATAACAGGAGC 57.433 47.619 0.00 0.00 0.00 4.70
2514 2995 2.846206 AGGTTGGATGATAACAGGAGCA 59.154 45.455 0.00 0.00 0.00 4.26
2515 2996 3.461085 AGGTTGGATGATAACAGGAGCAT 59.539 43.478 0.00 0.00 0.00 3.79
2516 2997 3.567164 GGTTGGATGATAACAGGAGCATG 59.433 47.826 0.00 0.00 0.00 4.06
2517 2998 3.497103 TGGATGATAACAGGAGCATGG 57.503 47.619 0.00 0.00 0.00 3.66
2518 2999 2.107031 TGGATGATAACAGGAGCATGGG 59.893 50.000 0.00 0.00 0.00 4.00
2519 3000 2.373169 GGATGATAACAGGAGCATGGGA 59.627 50.000 0.00 0.00 0.00 4.37
2520 3001 3.009916 GGATGATAACAGGAGCATGGGAT 59.990 47.826 0.00 0.00 0.00 3.85
2521 3002 4.508047 GGATGATAACAGGAGCATGGGATT 60.508 45.833 0.00 0.00 0.00 3.01
2522 3003 4.090761 TGATAACAGGAGCATGGGATTC 57.909 45.455 0.00 0.00 0.00 2.52
2523 3004 3.459227 TGATAACAGGAGCATGGGATTCA 59.541 43.478 0.00 0.00 0.00 2.57
2524 3005 2.431954 AACAGGAGCATGGGATTCAG 57.568 50.000 0.00 0.00 0.00 3.02
2525 3006 1.293062 ACAGGAGCATGGGATTCAGT 58.707 50.000 0.00 0.00 0.00 3.41
2526 3007 1.211457 ACAGGAGCATGGGATTCAGTC 59.789 52.381 0.00 0.00 0.00 3.51
2527 3008 1.211212 CAGGAGCATGGGATTCAGTCA 59.789 52.381 0.00 0.00 0.00 3.41
2528 3009 1.918262 AGGAGCATGGGATTCAGTCAA 59.082 47.619 0.00 0.00 0.00 3.18
2529 3010 2.309755 AGGAGCATGGGATTCAGTCAAA 59.690 45.455 0.00 0.00 0.00 2.69
2530 3011 3.091545 GGAGCATGGGATTCAGTCAAAA 58.908 45.455 0.00 0.00 0.00 2.44
2531 3012 3.511146 GGAGCATGGGATTCAGTCAAAAA 59.489 43.478 0.00 0.00 0.00 1.94
2551 3032 1.274703 AACGGGAGCATGGGAGTCAT 61.275 55.000 0.00 0.00 36.31 3.06
2591 3085 1.070577 CAGAACACTTTCCGCTTGTCG 60.071 52.381 0.00 0.00 38.08 4.35
2604 3098 1.066002 GCTTGTCGCATGCCAATATGT 59.934 47.619 13.15 0.00 38.92 2.29
2693 3187 5.028549 ACTGTCTGTCAAGATCAGTTTGT 57.971 39.130 0.00 0.00 39.59 2.83
2708 3202 9.753674 AGATCAGTTTGTTTGGAATAAGGAATA 57.246 29.630 0.00 0.00 0.00 1.75
2728 3222 3.508845 AGTGCCAAGTTATTCTGTGGT 57.491 42.857 0.00 0.00 33.43 4.16
2808 3304 5.656480 TCATGTGAATTCATGGAGCAATTG 58.344 37.500 12.12 0.00 43.52 2.32
2829 3325 4.903054 TGCAGAGGATATTCATGATGACC 58.097 43.478 0.00 0.00 0.00 4.02
2832 3328 3.517100 AGAGGATATTCATGATGACCGGG 59.483 47.826 6.32 0.00 0.00 5.73
2833 3329 3.515502 GAGGATATTCATGATGACCGGGA 59.484 47.826 6.32 0.00 0.00 5.14
2834 3330 4.107072 AGGATATTCATGATGACCGGGAT 58.893 43.478 6.32 0.00 0.00 3.85
2835 3331 4.163078 AGGATATTCATGATGACCGGGATC 59.837 45.833 6.32 7.65 0.00 3.36
2836 3332 2.462456 ATTCATGATGACCGGGATCG 57.538 50.000 6.32 0.00 0.00 3.69
2837 3333 0.249868 TTCATGATGACCGGGATCGC 60.250 55.000 6.32 0.00 34.56 4.58
2838 3334 1.115326 TCATGATGACCGGGATCGCT 61.115 55.000 6.32 0.00 34.56 4.93
2839 3335 0.250038 CATGATGACCGGGATCGCTT 60.250 55.000 6.32 0.00 34.56 4.68
2852 3348 2.546162 GGATCGCTTGACTTACTAGCCC 60.546 54.545 0.00 0.00 42.58 5.19
2853 3349 1.848652 TCGCTTGACTTACTAGCCCT 58.151 50.000 0.00 0.00 42.58 5.19
2854 3350 2.176889 TCGCTTGACTTACTAGCCCTT 58.823 47.619 0.00 0.00 42.58 3.95
2855 3351 3.359033 TCGCTTGACTTACTAGCCCTTA 58.641 45.455 0.00 0.00 42.58 2.69
2857 3353 4.037684 TCGCTTGACTTACTAGCCCTTATC 59.962 45.833 0.00 0.00 42.58 1.75
2875 3371 7.119699 GCCCTTATCGATCATGTTCATTCAATA 59.880 37.037 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.807386 GCGTCTATTTGGATTAACACATTATAC 57.193 33.333 0.00 0.00 0.00 1.47
59 60 8.705134 CGCGTCTATTTGGATTAACACATTATA 58.295 33.333 0.00 0.00 0.00 0.98
60 61 7.225931 ACGCGTCTATTTGGATTAACACATTAT 59.774 33.333 5.58 0.00 0.00 1.28
61 62 6.535865 ACGCGTCTATTTGGATTAACACATTA 59.464 34.615 5.58 0.00 0.00 1.90
62 63 5.353123 ACGCGTCTATTTGGATTAACACATT 59.647 36.000 5.58 0.00 0.00 2.71
63 64 4.873827 ACGCGTCTATTTGGATTAACACAT 59.126 37.500 5.58 0.00 0.00 3.21
64 65 4.092237 CACGCGTCTATTTGGATTAACACA 59.908 41.667 9.86 0.00 0.00 3.72
65 66 4.092383 ACACGCGTCTATTTGGATTAACAC 59.908 41.667 9.86 0.00 0.00 3.32
66 67 4.247258 ACACGCGTCTATTTGGATTAACA 58.753 39.130 9.86 0.00 0.00 2.41
67 68 4.852609 ACACGCGTCTATTTGGATTAAC 57.147 40.909 9.86 0.00 0.00 2.01
68 69 4.436317 GCAACACGCGTCTATTTGGATTAA 60.436 41.667 9.86 0.00 0.00 1.40
69 70 3.062909 GCAACACGCGTCTATTTGGATTA 59.937 43.478 9.86 0.00 0.00 1.75
70 71 2.159572 GCAACACGCGTCTATTTGGATT 60.160 45.455 9.86 0.00 0.00 3.01
71 72 1.396996 GCAACACGCGTCTATTTGGAT 59.603 47.619 9.86 0.00 0.00 3.41
72 73 0.793861 GCAACACGCGTCTATTTGGA 59.206 50.000 9.86 0.00 0.00 3.53
73 74 0.515127 TGCAACACGCGTCTATTTGG 59.485 50.000 9.86 0.00 46.97 3.28
74 75 1.591248 GTGCAACACGCGTCTATTTG 58.409 50.000 9.86 11.77 46.97 2.32
86 87 7.250030 GACTAATAAGTGTGCACGTGCAACA 62.250 44.000 42.04 34.57 44.44 3.33
87 88 4.897455 GACTAATAAGTGTGCACGTGCAAC 60.897 45.833 42.04 35.35 44.44 4.17
88 89 3.185594 GACTAATAAGTGTGCACGTGCAA 59.814 43.478 42.04 27.84 44.44 4.08
89 90 2.734606 GACTAATAAGTGTGCACGTGCA 59.265 45.455 37.86 37.86 42.12 4.57
90 91 2.093783 GGACTAATAAGTGTGCACGTGC 59.906 50.000 33.11 33.11 35.56 5.34
91 92 3.322369 TGGACTAATAAGTGTGCACGTG 58.678 45.455 12.28 12.28 35.56 4.49
92 93 3.671008 TGGACTAATAAGTGTGCACGT 57.329 42.857 13.13 0.35 35.56 4.49
93 94 5.545658 ATTTGGACTAATAAGTGTGCACG 57.454 39.130 13.13 0.00 35.56 5.34
94 95 7.464178 CGTCTATTTGGACTAATAAGTGTGCAC 60.464 40.741 10.75 10.75 35.56 4.57
95 96 6.533723 CGTCTATTTGGACTAATAAGTGTGCA 59.466 38.462 0.00 0.00 35.56 4.57
96 97 6.534079 ACGTCTATTTGGACTAATAAGTGTGC 59.466 38.462 0.00 0.00 35.56 4.57
97 98 7.544566 ACACGTCTATTTGGACTAATAAGTGTG 59.455 37.037 14.40 11.53 35.56 3.82
98 99 7.544566 CACACGTCTATTTGGACTAATAAGTGT 59.455 37.037 11.81 11.81 35.56 3.55
99 100 7.544566 ACACACGTCTATTTGGACTAATAAGTG 59.455 37.037 0.00 0.00 35.56 3.16
100 101 7.609056 ACACACGTCTATTTGGACTAATAAGT 58.391 34.615 0.00 0.00 39.21 2.24
101 102 8.380644 CAACACACGTCTATTTGGACTAATAAG 58.619 37.037 0.00 0.00 34.38 1.73
102 103 7.148540 GCAACACACGTCTATTTGGACTAATAA 60.149 37.037 0.00 0.00 34.38 1.40
103 104 6.311935 GCAACACACGTCTATTTGGACTAATA 59.688 38.462 0.00 0.00 34.38 0.98
104 105 5.121768 GCAACACACGTCTATTTGGACTAAT 59.878 40.000 0.00 0.00 34.38 1.73
105 106 4.449743 GCAACACACGTCTATTTGGACTAA 59.550 41.667 0.00 0.00 34.38 2.24
106 107 3.991773 GCAACACACGTCTATTTGGACTA 59.008 43.478 0.00 0.00 34.38 2.59
107 108 2.806244 GCAACACACGTCTATTTGGACT 59.194 45.455 0.00 0.00 34.38 3.85
108 109 2.546368 TGCAACACACGTCTATTTGGAC 59.454 45.455 0.00 0.00 0.00 4.02
109 110 2.546368 GTGCAACACACGTCTATTTGGA 59.454 45.455 0.00 0.00 40.07 3.53
110 111 2.916111 GTGCAACACACGTCTATTTGG 58.084 47.619 0.00 0.00 40.07 3.28
127 128 7.173863 ACATAACTAGTAAATATGCACGTGC 57.826 36.000 33.11 33.11 42.50 5.34
133 134 9.298113 CGCGTTAAACATAACTAGTAAATATGC 57.702 33.333 11.39 3.69 31.66 3.14
165 166 4.461081 GGACTAATCATCCACGCTAGATCT 59.539 45.833 0.00 0.00 36.15 2.75
198 199 0.179029 CAACCCGGACCACTCAAAGT 60.179 55.000 0.73 0.00 0.00 2.66
199 200 0.179029 ACAACCCGGACCACTCAAAG 60.179 55.000 0.73 0.00 0.00 2.77
211 212 1.374252 CAAGGACTCCGACAACCCG 60.374 63.158 0.00 0.00 0.00 5.28
212 213 1.003718 CCAAGGACTCCGACAACCC 60.004 63.158 0.00 0.00 0.00 4.11
233 235 2.106684 GTTTTGGGAGAGTCCAGACCTT 59.893 50.000 0.00 0.00 38.64 3.50
246 248 4.219919 CAAACTAGGGAAAGGTTTTGGGA 58.780 43.478 0.00 0.00 31.87 4.37
250 252 3.386726 GCCACAAACTAGGGAAAGGTTTT 59.613 43.478 0.00 0.00 31.87 2.43
264 266 1.591327 CTGCAAACCGGCCACAAAC 60.591 57.895 0.00 0.00 0.00 2.93
289 291 2.440409 ACAGATGAGTTTCATGCACCC 58.560 47.619 0.00 0.00 37.20 4.61
292 294 4.263435 TGCATACAGATGAGTTTCATGCA 58.737 39.130 2.43 2.43 43.48 3.96
353 361 9.335891 CATAAAACGTTTGCAAATGTCTGTATA 57.664 29.630 31.51 20.64 37.16 1.47
354 362 8.079203 TCATAAAACGTTTGCAAATGTCTGTAT 58.921 29.630 31.51 24.25 37.16 2.29
357 365 6.198029 TGTCATAAAACGTTTGCAAATGTCTG 59.802 34.615 31.51 24.57 37.16 3.51
359 367 6.198216 AGTGTCATAAAACGTTTGCAAATGTC 59.802 34.615 31.51 19.64 37.16 3.06
366 374 4.801516 ACCAAAGTGTCATAAAACGTTTGC 59.198 37.500 15.46 3.86 30.22 3.68
368 376 7.536855 TGTTACCAAAGTGTCATAAAACGTTT 58.463 30.769 7.96 7.96 0.00 3.60
369 377 7.086230 TGTTACCAAAGTGTCATAAAACGTT 57.914 32.000 0.00 0.00 0.00 3.99
386 394 5.428253 GGCATCTCACTATCTTTGTTACCA 58.572 41.667 0.00 0.00 0.00 3.25
387 395 4.816925 GGGCATCTCACTATCTTTGTTACC 59.183 45.833 0.00 0.00 0.00 2.85
388 396 5.675538 AGGGCATCTCACTATCTTTGTTAC 58.324 41.667 0.00 0.00 0.00 2.50
397 405 6.330250 ACAAATAGGTTAGGGCATCTCACTAT 59.670 38.462 0.00 0.00 0.00 2.12
408 416 5.123344 CGAGGTTGAAACAAATAGGTTAGGG 59.877 44.000 0.00 0.00 0.00 3.53
420 428 0.608035 GATGGCCCGAGGTTGAAACA 60.608 55.000 0.00 0.00 0.00 2.83
431 439 2.190578 GGAGGTCTTGATGGCCCG 59.809 66.667 0.00 0.00 42.71 6.13
449 457 3.295093 TCTGCACCACAAAATGAAAGGA 58.705 40.909 0.00 0.00 0.00 3.36
476 484 3.133183 GCCAACCTTGTTTTCAACCCTTA 59.867 43.478 0.00 0.00 35.77 2.69
482 490 5.415221 CACTAAAGCCAACCTTGTTTTCAA 58.585 37.500 0.00 0.00 38.21 2.69
483 491 4.679372 GCACTAAAGCCAACCTTGTTTTCA 60.679 41.667 0.00 0.00 33.01 2.69
485 493 3.792401 GCACTAAAGCCAACCTTGTTTT 58.208 40.909 0.00 0.00 33.01 2.43
498 506 0.179045 CCTGATCGGGGGCACTAAAG 60.179 60.000 13.34 0.00 0.00 1.85
509 517 3.770040 TGTGGTCGCCCTGATCGG 61.770 66.667 0.00 0.00 0.00 4.18
510 518 2.509336 GTGTGGTCGCCCTGATCG 60.509 66.667 0.00 0.00 0.00 3.69
517 525 1.527380 TTTTCCCAGTGTGGTCGCC 60.527 57.895 0.00 0.00 35.17 5.54
520 528 4.400529 AAATTGTTTTCCCAGTGTGGTC 57.599 40.909 0.00 0.00 35.17 4.02
522 530 4.512484 ACAAAATTGTTTTCCCAGTGTGG 58.488 39.130 0.00 0.00 38.47 4.17
526 534 6.232581 TGATGACAAAATTGTTTTCCCAGT 57.767 33.333 0.00 0.00 42.43 4.00
528 536 6.409704 TGTTGATGACAAAATTGTTTTCCCA 58.590 32.000 0.00 0.00 42.43 4.37
550 558 6.183360 CGAAGGGAATAAATAACAGGCAATGT 60.183 38.462 0.00 0.00 46.97 2.71
551 559 6.183360 ACGAAGGGAATAAATAACAGGCAATG 60.183 38.462 0.00 0.00 0.00 2.82
567 575 7.391620 AGTCTTATATTTGTGAACGAAGGGAA 58.608 34.615 0.00 0.00 0.00 3.97
616 624 9.840427 AACAAACACACTAAAATATGTCTATGC 57.160 29.630 0.00 0.00 0.00 3.14
742 751 9.146984 CAAAGTACTCTTCCGTTCATAAATACA 57.853 33.333 0.00 0.00 32.90 2.29
743 752 9.148104 ACAAAGTACTCTTCCGTTCATAAATAC 57.852 33.333 0.00 0.00 32.90 1.89
781 790 8.991026 TCAAAATTTATGGAGTGCTCATTTTTG 58.009 29.630 1.41 0.00 34.50 2.44
804 813 7.500892 TCCAAAATACTTGTAGCTTCAGTTCAA 59.499 33.333 0.00 0.00 0.00 2.69
806 815 7.435068 TCCAAAATACTTGTAGCTTCAGTTC 57.565 36.000 0.00 0.00 0.00 3.01
808 817 6.073222 CGTTCCAAAATACTTGTAGCTTCAGT 60.073 38.462 0.00 0.00 0.00 3.41
809 818 6.307155 CGTTCCAAAATACTTGTAGCTTCAG 58.693 40.000 0.00 0.00 0.00 3.02
810 819 5.180492 CCGTTCCAAAATACTTGTAGCTTCA 59.820 40.000 0.00 0.00 0.00 3.02
811 820 5.410439 TCCGTTCCAAAATACTTGTAGCTTC 59.590 40.000 0.00 0.00 0.00 3.86
814 823 4.094442 CCTCCGTTCCAAAATACTTGTAGC 59.906 45.833 0.00 0.00 0.00 3.58
815 824 4.634443 CCCTCCGTTCCAAAATACTTGTAG 59.366 45.833 0.00 0.00 0.00 2.74
816 825 4.566070 CCCCTCCGTTCCAAAATACTTGTA 60.566 45.833 0.00 0.00 0.00 2.41
818 827 2.752903 CCCCTCCGTTCCAAAATACTTG 59.247 50.000 0.00 0.00 0.00 3.16
1029 1448 4.680237 CGGCTGGGTGCACGAAGA 62.680 66.667 18.63 0.00 45.15 2.87
1057 1476 2.597903 GGGGTTGATCTGGGAGGC 59.402 66.667 0.00 0.00 0.00 4.70
1064 1483 3.782443 GACGGCGGGGGTTGATCT 61.782 66.667 13.24 0.00 0.00 2.75
1188 1607 2.452813 CGTGTGGTAGCGGCATGAC 61.453 63.158 1.45 0.00 0.00 3.06
1270 1698 4.760530 TTGGTAGATGAATCCTCACCAG 57.239 45.455 8.29 0.00 36.01 4.00
1323 1754 2.441375 TCATGGTTTGGAACTCACTGGA 59.559 45.455 0.00 0.00 0.00 3.86
1335 1766 1.731709 TCACTCGCGAATCATGGTTTG 59.268 47.619 11.33 1.11 0.00 2.93
1354 1785 4.440802 GGATCATATGGACGGCTACTGATC 60.441 50.000 16.42 16.42 37.73 2.92
1409 1840 6.406692 TCGGAGGGAGTAGATAAATTTGAG 57.593 41.667 0.00 0.00 0.00 3.02
1423 1854 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
1425 1856 4.618460 CGACAAGTAATATGGATCGGAGGG 60.618 50.000 0.00 0.00 0.00 4.30
1427 1858 3.921021 GCGACAAGTAATATGGATCGGAG 59.079 47.826 0.00 0.00 0.00 4.63
1428 1859 3.319689 TGCGACAAGTAATATGGATCGGA 59.680 43.478 0.00 0.00 0.00 4.55
1429 1860 3.649073 TGCGACAAGTAATATGGATCGG 58.351 45.455 0.00 0.00 0.00 4.18
1430 1861 3.121944 GCTGCGACAAGTAATATGGATCG 59.878 47.826 0.00 0.00 0.00 3.69
1431 1862 4.310769 AGCTGCGACAAGTAATATGGATC 58.689 43.478 0.00 0.00 0.00 3.36
1432 1863 4.342862 AGCTGCGACAAGTAATATGGAT 57.657 40.909 0.00 0.00 0.00 3.41
1434 1865 4.882671 AAAGCTGCGACAAGTAATATGG 57.117 40.909 0.00 0.00 0.00 2.74
1435 1866 8.765219 ACTATTAAAGCTGCGACAAGTAATATG 58.235 33.333 0.00 0.00 0.00 1.78
1436 1867 8.888579 ACTATTAAAGCTGCGACAAGTAATAT 57.111 30.769 0.00 0.00 0.00 1.28
1437 1868 9.241317 GTACTATTAAAGCTGCGACAAGTAATA 57.759 33.333 0.00 0.00 0.00 0.98
1438 1869 7.980099 AGTACTATTAAAGCTGCGACAAGTAAT 59.020 33.333 0.00 0.00 0.00 1.89
1439 1870 7.318141 AGTACTATTAAAGCTGCGACAAGTAA 58.682 34.615 0.00 0.00 0.00 2.24
1440 1871 6.860080 AGTACTATTAAAGCTGCGACAAGTA 58.140 36.000 0.00 0.00 0.00 2.24
1442 1873 6.750501 TGTAGTACTATTAAAGCTGCGACAAG 59.249 38.462 5.75 0.00 0.00 3.16
1443 1874 6.623486 TGTAGTACTATTAAAGCTGCGACAA 58.377 36.000 5.75 0.00 0.00 3.18
1444 1875 6.198650 TGTAGTACTATTAAAGCTGCGACA 57.801 37.500 5.75 0.00 0.00 4.35
1445 1876 6.750963 AGTTGTAGTACTATTAAAGCTGCGAC 59.249 38.462 5.75 0.32 0.00 5.19
1446 1877 6.860080 AGTTGTAGTACTATTAAAGCTGCGA 58.140 36.000 5.75 0.00 0.00 5.10
1447 1878 7.521509 AAGTTGTAGTACTATTAAAGCTGCG 57.478 36.000 5.75 0.00 0.00 5.18
1466 1897 9.010366 GCAGTTCTAACAAAAACTCTAAAGTTG 57.990 33.333 0.00 0.00 45.07 3.16
1468 1899 8.507524 AGCAGTTCTAACAAAAACTCTAAAGT 57.492 30.769 0.00 0.00 33.53 2.66
1469 1900 9.226345 CAAGCAGTTCTAACAAAAACTCTAAAG 57.774 33.333 0.00 0.00 33.53 1.85
1470 1901 7.700656 GCAAGCAGTTCTAACAAAAACTCTAAA 59.299 33.333 0.00 0.00 33.53 1.85
1471 1902 7.148154 TGCAAGCAGTTCTAACAAAAACTCTAA 60.148 33.333 0.00 0.00 33.53 2.10
1473 1904 5.125417 TGCAAGCAGTTCTAACAAAAACTCT 59.875 36.000 0.00 0.00 33.53 3.24
1475 1906 5.323371 TGCAAGCAGTTCTAACAAAAACT 57.677 34.783 0.00 0.00 36.16 2.66
1476 1907 7.096065 CCTTATGCAAGCAGTTCTAACAAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
1477 1908 6.922957 CCTTATGCAAGCAGTTCTAACAAAAA 59.077 34.615 0.00 0.00 0.00 1.94
1509 1940 2.428171 CAAAACAAGATCGGCATCCCAT 59.572 45.455 0.00 0.00 0.00 4.00
1514 1945 2.811431 TCGAACAAAACAAGATCGGCAT 59.189 40.909 0.00 0.00 32.96 4.40
1515 1946 2.214347 TCGAACAAAACAAGATCGGCA 58.786 42.857 0.00 0.00 32.96 5.69
1516 1947 2.961522 TCGAACAAAACAAGATCGGC 57.038 45.000 0.00 0.00 32.96 5.54
1563 2010 6.054035 GCAAAATGCTAGTATCTCAAGACC 57.946 41.667 0.00 0.00 40.96 3.85
1616 2063 1.189403 CTGACGACTTCGCCGATAAC 58.811 55.000 0.00 0.00 44.43 1.89
1623 2070 1.515304 GAGCTCCTGACGACTTCGC 60.515 63.158 0.87 0.00 44.43 4.70
1635 2082 2.223044 CGAAATGGTAAAAGCGAGCTCC 60.223 50.000 8.47 0.68 0.00 4.70
1657 2104 3.609853 TCAATCAGTATGCCTGTCCAAC 58.390 45.455 0.00 0.00 42.19 3.77
1663 2110 6.869913 ACAAAACAATTCAATCAGTATGCCTG 59.130 34.615 0.00 0.00 42.97 4.85
1673 2120 6.080406 GTCTCGAGGACAAAACAATTCAATC 58.920 40.000 13.56 0.00 43.94 2.67
1679 2126 3.771577 AGGTCTCGAGGACAAAACAAT 57.228 42.857 13.56 0.00 46.16 2.71
1829 2276 5.138276 CCAACATCAAATGGATCCTCTGAT 58.862 41.667 14.23 14.38 39.12 2.90
1893 2340 4.895889 AGAATGGACAGATAACGATCCAGA 59.104 41.667 0.00 0.00 44.28 3.86
1909 2356 0.976641 AGAGCACAACGGAGAATGGA 59.023 50.000 0.00 0.00 0.00 3.41
1910 2357 1.466167 CAAGAGCACAACGGAGAATGG 59.534 52.381 0.00 0.00 0.00 3.16
1911 2358 2.096069 CACAAGAGCACAACGGAGAATG 60.096 50.000 0.00 0.00 0.00 2.67
1912 2359 2.146342 CACAAGAGCACAACGGAGAAT 58.854 47.619 0.00 0.00 0.00 2.40
1913 2360 1.581934 CACAAGAGCACAACGGAGAA 58.418 50.000 0.00 0.00 0.00 2.87
1914 2361 0.249868 CCACAAGAGCACAACGGAGA 60.250 55.000 0.00 0.00 0.00 3.71
1915 2362 0.532862 ACCACAAGAGCACAACGGAG 60.533 55.000 0.00 0.00 0.00 4.63
1916 2363 0.107410 AACCACAAGAGCACAACGGA 60.107 50.000 0.00 0.00 0.00 4.69
1917 2364 0.307760 GAACCACAAGAGCACAACGG 59.692 55.000 0.00 0.00 0.00 4.44
1918 2365 1.299541 AGAACCACAAGAGCACAACG 58.700 50.000 0.00 0.00 0.00 4.10
1919 2366 3.467803 AGTAGAACCACAAGAGCACAAC 58.532 45.455 0.00 0.00 0.00 3.32
1920 2367 3.838244 AGTAGAACCACAAGAGCACAA 57.162 42.857 0.00 0.00 0.00 3.33
1921 2368 3.838244 AAGTAGAACCACAAGAGCACA 57.162 42.857 0.00 0.00 0.00 4.57
1922 2369 5.500645 AAAAAGTAGAACCACAAGAGCAC 57.499 39.130 0.00 0.00 0.00 4.40
1949 2396 0.464373 AGCGGGCCACTATTCATGTG 60.464 55.000 4.39 0.00 35.39 3.21
1950 2397 0.464373 CAGCGGGCCACTATTCATGT 60.464 55.000 4.39 0.00 0.00 3.21
1951 2398 0.179048 TCAGCGGGCCACTATTCATG 60.179 55.000 4.39 0.00 0.00 3.07
1952 2399 0.107456 CTCAGCGGGCCACTATTCAT 59.893 55.000 4.39 0.00 0.00 2.57
1953 2400 1.522092 CTCAGCGGGCCACTATTCA 59.478 57.895 4.39 0.00 0.00 2.57
1954 2401 1.227674 CCTCAGCGGGCCACTATTC 60.228 63.158 4.39 0.00 0.00 1.75
1955 2402 1.056700 ATCCTCAGCGGGCCACTATT 61.057 55.000 4.39 0.00 0.00 1.73
1956 2403 1.460305 ATCCTCAGCGGGCCACTAT 60.460 57.895 4.39 0.00 0.00 2.12
1957 2404 2.041922 ATCCTCAGCGGGCCACTA 60.042 61.111 4.39 0.00 0.00 2.74
1958 2405 3.474570 GATCCTCAGCGGGCCACT 61.475 66.667 4.39 0.00 0.00 4.00
1959 2406 4.554036 GGATCCTCAGCGGGCCAC 62.554 72.222 4.39 0.00 0.00 5.01
1961 2408 2.631012 AAATGGATCCTCAGCGGGCC 62.631 60.000 14.23 0.00 0.00 5.80
1962 2409 1.152881 AAATGGATCCTCAGCGGGC 60.153 57.895 14.23 0.00 0.00 6.13
1963 2410 0.181114 TCAAATGGATCCTCAGCGGG 59.819 55.000 14.23 0.00 0.00 6.13
1964 2411 1.878088 CATCAAATGGATCCTCAGCGG 59.122 52.381 14.23 0.00 32.57 5.52
1965 2412 2.569059 ACATCAAATGGATCCTCAGCG 58.431 47.619 14.23 0.00 32.57 5.18
1966 2413 3.067742 CCAACATCAAATGGATCCTCAGC 59.932 47.826 14.23 0.00 39.12 4.26
1967 2414 4.275810 ACCAACATCAAATGGATCCTCAG 58.724 43.478 14.23 0.45 39.12 3.35
1968 2415 4.320546 ACCAACATCAAATGGATCCTCA 57.679 40.909 14.23 0.00 39.12 3.86
1969 2416 4.463891 ACAACCAACATCAAATGGATCCTC 59.536 41.667 14.23 0.00 39.12 3.71
1970 2417 4.419282 ACAACCAACATCAAATGGATCCT 58.581 39.130 14.23 0.00 39.12 3.24
1971 2418 4.806640 ACAACCAACATCAAATGGATCC 57.193 40.909 4.20 4.20 39.12 3.36
1972 2419 5.650543 GGTACAACCAACATCAAATGGATC 58.349 41.667 0.00 0.00 39.12 3.36
1973 2420 4.157656 CGGTACAACCAACATCAAATGGAT 59.842 41.667 0.00 0.00 38.47 3.41
1974 2421 3.504134 CGGTACAACCAACATCAAATGGA 59.496 43.478 0.00 0.00 38.47 3.41
1975 2422 3.832276 CGGTACAACCAACATCAAATGG 58.168 45.455 0.00 0.00 38.47 3.16
1976 2423 3.057596 AGCGGTACAACCAACATCAAATG 60.058 43.478 0.00 0.00 38.47 2.32
1977 2424 3.057596 CAGCGGTACAACCAACATCAAAT 60.058 43.478 0.00 0.00 38.47 2.32
1978 2425 2.292016 CAGCGGTACAACCAACATCAAA 59.708 45.455 0.00 0.00 38.47 2.69
1979 2426 1.876799 CAGCGGTACAACCAACATCAA 59.123 47.619 0.00 0.00 38.47 2.57
1980 2427 1.518325 CAGCGGTACAACCAACATCA 58.482 50.000 0.00 0.00 38.47 3.07
1981 2428 0.168128 GCAGCGGTACAACCAACATC 59.832 55.000 0.00 0.00 38.47 3.06
1982 2429 0.250727 AGCAGCGGTACAACCAACAT 60.251 50.000 0.00 0.00 38.47 2.71
1983 2430 0.882927 GAGCAGCGGTACAACCAACA 60.883 55.000 0.00 0.00 38.47 3.33
1984 2431 1.574702 GGAGCAGCGGTACAACCAAC 61.575 60.000 0.00 0.00 38.47 3.77
1985 2432 1.302192 GGAGCAGCGGTACAACCAA 60.302 57.895 0.00 0.00 38.47 3.67
1986 2433 2.345991 GGAGCAGCGGTACAACCA 59.654 61.111 0.00 0.00 38.47 3.67
1987 2434 2.436115 GGGAGCAGCGGTACAACC 60.436 66.667 0.00 0.00 34.05 3.77
1988 2435 1.448013 GAGGGAGCAGCGGTACAAC 60.448 63.158 0.00 0.00 0.00 3.32
1989 2436 1.911269 TGAGGGAGCAGCGGTACAA 60.911 57.895 0.00 0.00 0.00 2.41
1990 2437 2.283604 TGAGGGAGCAGCGGTACA 60.284 61.111 0.00 0.00 0.00 2.90
1991 2438 2.184579 GTGAGGGAGCAGCGGTAC 59.815 66.667 0.00 0.00 0.00 3.34
1992 2439 2.037367 AGTGAGGGAGCAGCGGTA 59.963 61.111 0.00 0.00 0.00 4.02
1993 2440 3.386237 GAGTGAGGGAGCAGCGGT 61.386 66.667 0.00 0.00 0.00 5.68
1994 2441 2.570582 GAAGAGTGAGGGAGCAGCGG 62.571 65.000 0.00 0.00 0.00 5.52
1995 2442 1.153667 GAAGAGTGAGGGAGCAGCG 60.154 63.158 0.00 0.00 0.00 5.18
1996 2443 0.540923 ATGAAGAGTGAGGGAGCAGC 59.459 55.000 0.00 0.00 0.00 5.25
1997 2444 2.223688 CGTATGAAGAGTGAGGGAGCAG 60.224 54.545 0.00 0.00 0.00 4.24
1998 2445 1.751351 CGTATGAAGAGTGAGGGAGCA 59.249 52.381 0.00 0.00 0.00 4.26
1999 2446 2.025155 TCGTATGAAGAGTGAGGGAGC 58.975 52.381 0.00 0.00 0.00 4.70
2000 2447 3.885901 TCATCGTATGAAGAGTGAGGGAG 59.114 47.826 0.00 0.00 36.11 4.30
2001 2448 3.632604 GTCATCGTATGAAGAGTGAGGGA 59.367 47.826 0.00 0.00 41.69 4.20
2002 2449 3.634448 AGTCATCGTATGAAGAGTGAGGG 59.366 47.826 0.00 0.00 41.69 4.30
2003 2450 4.909696 AGTCATCGTATGAAGAGTGAGG 57.090 45.455 0.00 0.00 41.69 3.86
2004 2451 9.388346 GTATTTAGTCATCGTATGAAGAGTGAG 57.612 37.037 7.61 0.00 41.69 3.51
2005 2452 8.068380 CGTATTTAGTCATCGTATGAAGAGTGA 58.932 37.037 7.61 0.00 41.69 3.41
2006 2453 7.856398 ACGTATTTAGTCATCGTATGAAGAGTG 59.144 37.037 7.61 0.00 41.69 3.51
2007 2454 7.928103 ACGTATTTAGTCATCGTATGAAGAGT 58.072 34.615 3.22 3.22 41.69 3.24
2008 2455 8.783999 AACGTATTTAGTCATCGTATGAAGAG 57.216 34.615 0.00 0.00 41.69 2.85
2012 2459 9.821662 CAGATAACGTATTTAGTCATCGTATGA 57.178 33.333 0.00 0.00 36.84 2.15
2013 2460 9.608617 ACAGATAACGTATTTAGTCATCGTATG 57.391 33.333 0.00 0.00 34.38 2.39
2014 2461 9.823098 GACAGATAACGTATTTAGTCATCGTAT 57.177 33.333 0.00 0.00 34.38 3.06
2015 2462 8.285394 GGACAGATAACGTATTTAGTCATCGTA 58.715 37.037 10.97 0.00 34.38 3.43
2016 2463 7.137426 GGACAGATAACGTATTTAGTCATCGT 58.863 38.462 10.97 0.00 36.31 3.73
2017 2464 7.136772 TGGACAGATAACGTATTTAGTCATCG 58.863 38.462 10.97 0.00 0.00 3.84
2018 2465 9.477484 AATGGACAGATAACGTATTTAGTCATC 57.523 33.333 10.97 0.00 0.00 2.92
2019 2466 9.477484 GAATGGACAGATAACGTATTTAGTCAT 57.523 33.333 10.97 0.00 0.00 3.06
2020 2467 8.692710 AGAATGGACAGATAACGTATTTAGTCA 58.307 33.333 10.97 0.00 0.00 3.41
2021 2468 9.182933 GAGAATGGACAGATAACGTATTTAGTC 57.817 37.037 0.00 0.00 0.00 2.59
2022 2469 8.142551 GGAGAATGGACAGATAACGTATTTAGT 58.857 37.037 0.00 0.00 0.00 2.24
2023 2470 8.141909 TGGAGAATGGACAGATAACGTATTTAG 58.858 37.037 0.00 0.00 0.00 1.85
2024 2471 8.014070 TGGAGAATGGACAGATAACGTATTTA 57.986 34.615 0.00 0.00 0.00 1.40
2025 2472 6.884832 TGGAGAATGGACAGATAACGTATTT 58.115 36.000 0.00 0.00 0.00 1.40
2026 2473 6.479972 TGGAGAATGGACAGATAACGTATT 57.520 37.500 0.00 0.00 0.00 1.89
2027 2474 6.672266 ATGGAGAATGGACAGATAACGTAT 57.328 37.500 0.00 0.00 0.00 3.06
2028 2475 6.127168 ACAATGGAGAATGGACAGATAACGTA 60.127 38.462 0.00 0.00 0.00 3.57
2029 2476 5.118990 CAATGGAGAATGGACAGATAACGT 58.881 41.667 0.00 0.00 0.00 3.99
2030 2477 5.007039 CACAATGGAGAATGGACAGATAACG 59.993 44.000 0.00 0.00 0.00 3.18
2031 2478 5.220931 GCACAATGGAGAATGGACAGATAAC 60.221 44.000 0.00 0.00 0.00 1.89
2032 2479 4.883585 GCACAATGGAGAATGGACAGATAA 59.116 41.667 0.00 0.00 0.00 1.75
2033 2480 4.164796 AGCACAATGGAGAATGGACAGATA 59.835 41.667 0.00 0.00 0.00 1.98
2034 2481 3.053842 AGCACAATGGAGAATGGACAGAT 60.054 43.478 0.00 0.00 0.00 2.90
2035 2482 2.306805 AGCACAATGGAGAATGGACAGA 59.693 45.455 0.00 0.00 0.00 3.41
2036 2483 2.681848 GAGCACAATGGAGAATGGACAG 59.318 50.000 0.00 0.00 0.00 3.51
2037 2484 2.306805 AGAGCACAATGGAGAATGGACA 59.693 45.455 0.00 0.00 0.00 4.02
2038 2485 2.996631 AGAGCACAATGGAGAATGGAC 58.003 47.619 0.00 0.00 0.00 4.02
2039 2486 3.245016 ACAAGAGCACAATGGAGAATGGA 60.245 43.478 0.00 0.00 0.00 3.41
2040 2487 3.087031 ACAAGAGCACAATGGAGAATGG 58.913 45.455 0.00 0.00 0.00 3.16
2041 2488 3.754850 TCACAAGAGCACAATGGAGAATG 59.245 43.478 0.00 0.00 0.00 2.67
2042 2489 4.025040 TCACAAGAGCACAATGGAGAAT 57.975 40.909 0.00 0.00 0.00 2.40
2043 2490 3.490439 TCACAAGAGCACAATGGAGAA 57.510 42.857 0.00 0.00 0.00 2.87
2044 2491 3.708403 ATCACAAGAGCACAATGGAGA 57.292 42.857 0.00 0.00 0.00 3.71
2045 2492 4.008330 AGAATCACAAGAGCACAATGGAG 58.992 43.478 0.00 0.00 0.00 3.86
2345 2826 4.441634 CCCTTTAGCGTGAGTAAGCACTAT 60.442 45.833 0.00 0.00 36.65 2.12
2355 2836 0.460284 ATCGTGCCCTTTAGCGTGAG 60.460 55.000 0.00 0.00 34.65 3.51
2356 2837 0.036765 AATCGTGCCCTTTAGCGTGA 60.037 50.000 0.00 0.00 34.65 4.35
2368 2849 4.616181 AACTTTAGTGCCATAATCGTGC 57.384 40.909 0.00 0.00 0.00 5.34
2376 2857 7.524717 ACTTTATGACAAACTTTAGTGCCAT 57.475 32.000 0.00 0.00 0.00 4.40
2394 2875 2.633481 GACAGCCCGGGAGATACTTTAT 59.367 50.000 29.31 0.00 0.00 1.40
2396 2877 0.831307 GACAGCCCGGGAGATACTTT 59.169 55.000 29.31 3.55 0.00 2.66
2436 2917 8.830580 AGTTAATACTGCAGTGCAAATATGTAG 58.169 33.333 29.57 7.22 38.41 2.74
2472 2953 4.403432 CCTATCATGCAAACTGGGATTGTT 59.597 41.667 0.00 0.00 0.00 2.83
2529 3010 0.112412 ACTCCCATGCTCCCGTTTTT 59.888 50.000 0.00 0.00 0.00 1.94
2530 3011 0.322546 GACTCCCATGCTCCCGTTTT 60.323 55.000 0.00 0.00 0.00 2.43
2531 3012 1.299976 GACTCCCATGCTCCCGTTT 59.700 57.895 0.00 0.00 0.00 3.60
2532 3013 1.274703 ATGACTCCCATGCTCCCGTT 61.275 55.000 0.00 0.00 33.39 4.44
2533 3014 1.690219 GATGACTCCCATGCTCCCGT 61.690 60.000 0.00 0.00 35.17 5.28
2534 3015 1.070445 GATGACTCCCATGCTCCCG 59.930 63.158 0.00 0.00 35.17 5.14
2535 3016 1.070445 CGATGACTCCCATGCTCCC 59.930 63.158 0.00 0.00 35.17 4.30
2536 3017 1.070445 CCGATGACTCCCATGCTCC 59.930 63.158 0.00 0.00 35.17 4.70
2537 3018 0.531532 CACCGATGACTCCCATGCTC 60.532 60.000 0.00 0.00 35.17 4.26
2538 3019 1.524002 CACCGATGACTCCCATGCT 59.476 57.895 0.00 0.00 35.17 3.79
2539 3020 1.524621 CCACCGATGACTCCCATGC 60.525 63.158 0.00 0.00 35.17 4.06
2604 3098 1.832366 CCATTTGTCCCAATGGCATGA 59.168 47.619 0.00 0.00 39.43 3.07
2627 3121 1.874872 GCCTCTAGTACTACTGCTCGG 59.125 57.143 0.00 0.00 0.00 4.63
2693 3187 6.252995 ACTTGGCACTATTCCTTATTCCAAA 58.747 36.000 0.00 0.00 32.70 3.28
2708 3202 3.508845 ACCACAGAATAACTTGGCACT 57.491 42.857 0.00 0.00 33.36 4.40
2808 3304 3.931468 CGGTCATCATGAATATCCTCTGC 59.069 47.826 0.00 0.00 0.00 4.26
2829 3325 2.859032 GCTAGTAAGTCAAGCGATCCCG 60.859 54.545 0.00 0.00 39.16 5.14
2832 3328 2.362717 AGGGCTAGTAAGTCAAGCGATC 59.637 50.000 0.00 0.00 37.11 3.69
2833 3329 2.389715 AGGGCTAGTAAGTCAAGCGAT 58.610 47.619 0.00 0.00 37.11 4.58
2834 3330 1.848652 AGGGCTAGTAAGTCAAGCGA 58.151 50.000 0.00 0.00 37.11 4.93
2835 3331 2.674796 AAGGGCTAGTAAGTCAAGCG 57.325 50.000 0.00 0.00 37.11 4.68
2836 3332 4.037684 TCGATAAGGGCTAGTAAGTCAAGC 59.962 45.833 0.00 0.00 35.47 4.01
2837 3333 5.769484 TCGATAAGGGCTAGTAAGTCAAG 57.231 43.478 0.00 0.00 0.00 3.02
2838 3334 5.831525 TGATCGATAAGGGCTAGTAAGTCAA 59.168 40.000 0.00 0.00 0.00 3.18
2839 3335 5.382616 TGATCGATAAGGGCTAGTAAGTCA 58.617 41.667 0.00 0.00 0.00 3.41
2854 3350 9.301153 CGGTATATTGAATGAACATGATCGATA 57.699 33.333 0.00 0.40 0.00 2.92
2855 3351 7.278646 CCGGTATATTGAATGAACATGATCGAT 59.721 37.037 0.00 0.00 0.00 3.59
2857 3353 6.368791 ACCGGTATATTGAATGAACATGATCG 59.631 38.462 4.49 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.