Multiple sequence alignment - TraesCS7A01G341100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G341100 chr7A 100.000 7413 0 0 1 7413 501055917 501063329 0.000000e+00 13690
1 TraesCS7A01G341100 chr7A 99.091 110 1 0 2967 3076 513215586 513215695 1.630000e-46 198
2 TraesCS7A01G341100 chr7A 88.489 139 13 1 4635 4773 686805271 686805136 1.650000e-36 165
3 TraesCS7A01G341100 chr7D 97.635 3002 49 12 3072 6062 431933891 431930901 0.000000e+00 5131
4 TraesCS7A01G341100 chr7D 94.658 2752 96 23 119 2832 431936954 431934216 0.000000e+00 4220
5 TraesCS7A01G341100 chr7D 88.158 912 65 17 6056 6932 431930647 431929744 0.000000e+00 1046
6 TraesCS7A01G341100 chr7D 84.416 462 48 11 6928 7379 431929693 431929246 4.110000e-117 433
7 TraesCS7A01G341100 chr7D 98.198 111 2 0 2967 3077 241737057 241737167 2.110000e-45 195
8 TraesCS7A01G341100 chr7D 98.182 110 2 0 2967 3076 227507121 227507230 7.590000e-45 193
9 TraesCS7A01G341100 chr7D 96.386 83 2 1 2829 2910 431934140 431934058 1.300000e-27 135
10 TraesCS7A01G341100 chr7B 96.406 3005 73 17 3072 6062 450566082 450569065 0.000000e+00 4918
11 TraesCS7A01G341100 chr7B 93.054 2030 89 29 94 2094 450562932 450564938 0.000000e+00 2920
12 TraesCS7A01G341100 chr7B 96.757 740 24 0 2093 2832 450565018 450565757 0.000000e+00 1234
13 TraesCS7A01G341100 chr7B 90.256 780 45 12 6181 6932 450569409 450570185 0.000000e+00 990
14 TraesCS7A01G341100 chr7B 97.368 114 3 0 2960 3073 22070293 22070406 2.110000e-45 195
15 TraesCS7A01G341100 chr7B 94.355 124 4 3 2951 3073 525454796 525454675 3.530000e-43 187
16 TraesCS7A01G341100 chr7B 98.936 94 1 0 6056 6149 450569319 450569412 1.280000e-37 169
17 TraesCS7A01G341100 chr7B 96.591 88 2 1 7327 7413 450570654 450570741 2.160000e-30 145
18 TraesCS7A01G341100 chr7B 91.566 83 6 1 2829 2910 450565832 450565914 6.080000e-21 113
19 TraesCS7A01G341100 chr1D 90.898 802 50 10 3973 4773 468887210 468887989 0.000000e+00 1055
20 TraesCS7A01G341100 chr1D 90.174 804 53 11 3973 4773 49519566 49520346 0.000000e+00 1024
21 TraesCS7A01G341100 chr4D 90.637 801 49 11 3976 4773 500521924 500521147 0.000000e+00 1040
22 TraesCS7A01G341100 chr1B 88.780 508 32 12 4276 4773 46149830 46150322 3.830000e-167 599
23 TraesCS7A01G341100 chr1B 92.469 239 13 1 3973 4211 46139480 46139713 3.310000e-88 337
24 TraesCS7A01G341100 chr5D 90.407 344 22 5 4108 4449 445653645 445653979 6.830000e-120 442
25 TraesCS7A01G341100 chr5D 90.116 344 23 5 4108 4449 445651784 445652118 3.180000e-118 436
26 TraesCS7A01G341100 chr6B 96.032 126 3 2 2950 3075 195807178 195807055 3.510000e-48 204
27 TraesCS7A01G341100 chr5B 96.581 117 4 0 2957 3073 559999741 559999857 2.110000e-45 195
28 TraesCS7A01G341100 chr5B 95.798 119 4 1 2955 3073 697185052 697184935 2.730000e-44 191
29 TraesCS7A01G341100 chr3B 90.977 133 10 2 2967 3098 680308208 680308077 2.130000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G341100 chr7A 501055917 501063329 7412 False 13690.000000 13690 100.000000 1 7413 1 chr7A.!!$F1 7412
1 TraesCS7A01G341100 chr7D 431929246 431936954 7708 True 2193.000000 5131 92.250600 119 7379 5 chr7D.!!$R1 7260
2 TraesCS7A01G341100 chr7B 450562932 450570741 7809 False 1498.428571 4918 94.795143 94 7413 7 chr7B.!!$F2 7319
3 TraesCS7A01G341100 chr1D 468887210 468887989 779 False 1055.000000 1055 90.898000 3973 4773 1 chr1D.!!$F2 800
4 TraesCS7A01G341100 chr1D 49519566 49520346 780 False 1024.000000 1024 90.174000 3973 4773 1 chr1D.!!$F1 800
5 TraesCS7A01G341100 chr4D 500521147 500521924 777 True 1040.000000 1040 90.637000 3976 4773 1 chr4D.!!$R1 797
6 TraesCS7A01G341100 chr5D 445651784 445653979 2195 False 439.000000 442 90.261500 4108 4449 2 chr5D.!!$F1 341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 679 0.984961 CCATCAGCTCTTCCTCCCCA 60.985 60.0 0.00 0.00 0.00 4.96 F
1533 1594 0.320073 TGCCATGCTTTGCTTGCTTC 60.320 50.0 0.00 0.00 33.27 3.86 F
2982 3324 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.0 13.34 13.34 0.00 4.55 F
3776 4124 0.108804 TCAGTTCCGCTTCATCGACC 60.109 55.0 0.00 0.00 0.00 4.79 F
4896 5256 5.310451 TGAAGTTATTCTTTTACTGCCCGT 58.690 37.5 0.00 0.00 36.40 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 1632 1.627329 AGCAGACTCTTTCCATCAGCA 59.373 47.619 0.00 0.00 0.00 4.41 R
3055 3397 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R
4752 5111 3.636300 TGGATCAGTTTTGTTCCAAGGTG 59.364 43.478 5.16 0.00 45.67 4.00 R
5239 5600 2.069273 GATGTTCTGTTCCTGGACACG 58.931 52.381 0.00 0.00 0.00 4.49 R
6558 7194 0.103208 GGGACTGACCGATGCTACAG 59.897 60.000 0.00 0.00 40.11 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.767524 ACAATATTATTGAAAAGACGGCCA 57.232 33.333 20.54 0.00 0.00 5.36
25 26 7.346751 ACAATATTATTGAAAAGACGGCCAT 57.653 32.000 20.54 0.00 0.00 4.40
26 27 8.458573 ACAATATTATTGAAAAGACGGCCATA 57.541 30.769 20.54 0.00 0.00 2.74
29 30 6.619801 ATTATTGAAAAGACGGCCATAGAC 57.380 37.500 2.24 0.00 0.00 2.59
30 31 3.410631 TTGAAAAGACGGCCATAGACA 57.589 42.857 2.24 0.00 0.00 3.41
31 32 3.410631 TGAAAAGACGGCCATAGACAA 57.589 42.857 2.24 0.00 0.00 3.18
32 33 3.745799 TGAAAAGACGGCCATAGACAAA 58.254 40.909 2.24 0.00 0.00 2.83
33 34 4.138290 TGAAAAGACGGCCATAGACAAAA 58.862 39.130 2.24 0.00 0.00 2.44
34 35 4.023536 TGAAAAGACGGCCATAGACAAAAC 60.024 41.667 2.24 0.00 0.00 2.43
35 36 2.851263 AGACGGCCATAGACAAAACA 57.149 45.000 2.24 0.00 0.00 2.83
36 37 3.134574 AGACGGCCATAGACAAAACAA 57.865 42.857 2.24 0.00 0.00 2.83
37 38 3.686016 AGACGGCCATAGACAAAACAAT 58.314 40.909 2.24 0.00 0.00 2.71
38 39 4.839121 AGACGGCCATAGACAAAACAATA 58.161 39.130 2.24 0.00 0.00 1.90
39 40 5.437060 AGACGGCCATAGACAAAACAATAT 58.563 37.500 2.24 0.00 0.00 1.28
40 41 5.885912 AGACGGCCATAGACAAAACAATATT 59.114 36.000 2.24 0.00 0.00 1.28
41 42 6.377146 AGACGGCCATAGACAAAACAATATTT 59.623 34.615 2.24 0.00 0.00 1.40
42 43 6.560711 ACGGCCATAGACAAAACAATATTTC 58.439 36.000 2.24 0.00 0.00 2.17
44 45 6.692681 CGGCCATAGACAAAACAATATTTCAG 59.307 38.462 2.24 0.00 0.00 3.02
45 46 6.980397 GGCCATAGACAAAACAATATTTCAGG 59.020 38.462 0.00 0.00 0.00 3.86
46 47 6.980397 GCCATAGACAAAACAATATTTCAGGG 59.020 38.462 0.00 0.00 0.00 4.45
47 48 6.980397 CCATAGACAAAACAATATTTCAGGGC 59.020 38.462 0.00 0.00 0.00 5.19
48 49 5.059404 AGACAAAACAATATTTCAGGGCG 57.941 39.130 0.00 0.00 0.00 6.13
51 52 6.207810 AGACAAAACAATATTTCAGGGCGTTA 59.792 34.615 0.00 0.00 0.00 3.18
54 55 8.524487 ACAAAACAATATTTCAGGGCGTTATTA 58.476 29.630 0.00 0.00 0.00 0.98
55 56 9.019764 CAAAACAATATTTCAGGGCGTTATTAG 57.980 33.333 0.00 0.00 0.00 1.73
57 58 7.875327 ACAATATTTCAGGGCGTTATTAGTT 57.125 32.000 0.00 0.00 0.00 2.24
58 59 8.288689 ACAATATTTCAGGGCGTTATTAGTTT 57.711 30.769 0.00 0.00 0.00 2.66
59 60 8.745590 ACAATATTTCAGGGCGTTATTAGTTTT 58.254 29.630 0.00 0.00 0.00 2.43
60 61 9.581099 CAATATTTCAGGGCGTTATTAGTTTTT 57.419 29.630 0.00 0.00 0.00 1.94
84 85 5.089970 ACCCTCGGTAAAGTACATTAACC 57.910 43.478 0.53 0.00 32.11 2.85
85 86 4.080919 ACCCTCGGTAAAGTACATTAACCC 60.081 45.833 0.53 0.00 32.11 4.11
87 88 4.872124 CCTCGGTAAAGTACATTAACCCAC 59.128 45.833 0.53 0.00 0.00 4.61
89 90 3.618150 CGGTAAAGTACATTAACCCACCG 59.382 47.826 7.49 7.49 40.21 4.94
90 91 4.831107 GGTAAAGTACATTAACCCACCGA 58.169 43.478 0.00 0.00 0.00 4.69
91 92 5.244755 GGTAAAGTACATTAACCCACCGAA 58.755 41.667 0.00 0.00 0.00 4.30
92 93 5.882000 GGTAAAGTACATTAACCCACCGAAT 59.118 40.000 0.00 0.00 0.00 3.34
106 107 2.498481 CACCGAATTAGGTAGGTGTGGA 59.502 50.000 10.16 0.00 46.52 4.02
107 108 2.764572 ACCGAATTAGGTAGGTGTGGAG 59.235 50.000 8.68 0.00 43.89 3.86
112 113 5.581085 CGAATTAGGTAGGTGTGGAGAAAAG 59.419 44.000 0.00 0.00 0.00 2.27
131 132 3.698029 AGGCGAACAATGATGCATAAC 57.302 42.857 0.00 0.00 0.00 1.89
167 168 3.789224 GCGTGAAATTTGTTGTTCGTCTT 59.211 39.130 0.00 0.00 0.00 3.01
171 172 5.802956 GTGAAATTTGTTGTTCGTCTTTGGA 59.197 36.000 0.00 0.00 0.00 3.53
173 174 6.529829 TGAAATTTGTTGTTCGTCTTTGGAAG 59.470 34.615 0.00 0.00 0.00 3.46
190 191 6.419484 TTGGAAGACATAGTGAAGTTGAGA 57.581 37.500 0.00 0.00 0.00 3.27
194 195 6.756074 GGAAGACATAGTGAAGTTGAGATCTG 59.244 42.308 0.00 0.00 0.00 2.90
290 291 4.102210 AGCATCTATCCGATTATCCATGGG 59.898 45.833 13.02 0.00 31.83 4.00
291 292 4.101585 GCATCTATCCGATTATCCATGGGA 59.898 45.833 13.02 0.00 43.52 4.37
292 293 5.605534 CATCTATCCGATTATCCATGGGAC 58.394 45.833 13.02 0.00 42.26 4.46
295 296 6.811322 ATCTATCCGATTATCCATGGGACAGA 60.811 42.308 13.02 3.57 44.81 3.41
321 324 5.848286 TCAATGGCCAAGATCCATACTAT 57.152 39.130 10.96 0.00 43.13 2.12
383 386 8.936864 GCAATATCAAAACTAAGCGTATATCCT 58.063 33.333 0.00 0.00 0.00 3.24
440 447 9.474920 CAAATGCATAAGTAAGTTGAAAAAGGA 57.525 29.630 0.00 0.00 0.00 3.36
442 449 9.696917 AATGCATAAGTAAGTTGAAAAAGGAAG 57.303 29.630 0.00 0.00 0.00 3.46
517 533 1.179152 AAGGCCGAAATAAAACCCGG 58.821 50.000 0.00 0.00 44.34 5.73
663 679 0.984961 CCATCAGCTCTTCCTCCCCA 60.985 60.000 0.00 0.00 0.00 4.96
675 699 4.995058 TCCCCACACCACCCTCCC 62.995 72.222 0.00 0.00 0.00 4.30
793 817 1.137404 CTTGGCGCCCTTCATTTCG 59.863 57.895 26.77 0.00 0.00 3.46
939 963 4.794648 TTGGGCGCCTCAATCGGG 62.795 66.667 28.56 0.00 0.00 5.14
1247 1280 9.194271 GGCGTTTTGAATTTTATTTTACCAGTA 57.806 29.630 0.00 0.00 0.00 2.74
1533 1594 0.320073 TGCCATGCTTTGCTTGCTTC 60.320 50.000 0.00 0.00 33.27 3.86
1536 1597 2.334838 CCATGCTTTGCTTGCTTCTTC 58.665 47.619 0.00 0.00 33.27 2.87
1538 1599 3.554337 CCATGCTTTGCTTGCTTCTTCTT 60.554 43.478 0.00 0.00 33.27 2.52
1615 1676 9.587772 GCTGAAAATCTCACTGTTATAGTAGAA 57.412 33.333 0.00 0.00 37.60 2.10
1631 1693 0.317479 AGAACCAACTCCGTTCTCCG 59.683 55.000 0.00 0.00 45.28 4.63
2013 2080 7.112122 TCTATTGTCATGCATGGAAAGTTAGT 58.888 34.615 25.97 8.30 0.00 2.24
2145 2296 5.086621 ACATAGTTTCCTCCATTTGCCTTT 58.913 37.500 0.00 0.00 0.00 3.11
2167 2318 8.534496 CCTTTTCCTCATTAATGGAGAATTTGT 58.466 33.333 15.36 0.00 34.24 2.83
2330 2481 3.953712 TCGTAGGTTCAGCTTTCATGA 57.046 42.857 0.00 0.00 0.00 3.07
2366 2517 1.480545 GGGGGTCAATGGTAATGTTGC 59.519 52.381 0.00 0.00 0.00 4.17
2413 2564 6.879400 ACCACTTTGGCAGTTTTATTGTTTA 58.121 32.000 0.00 0.00 42.67 2.01
2538 2689 7.882791 TCTTTTGAATAGAAGGTGCAATCACTA 59.117 33.333 0.00 0.00 42.72 2.74
2749 2900 6.289064 AGTGTTCGAAAGGTACATTCTTTCT 58.711 36.000 16.24 0.00 44.57 2.52
2895 3126 6.546428 AAGTTCGAAGGAATCCTAGAATCA 57.454 37.500 18.51 0.13 34.63 2.57
2910 3141 3.771216 AGAATCAATGCCAAGGACAGTT 58.229 40.909 0.00 0.00 0.00 3.16
2911 3142 4.922206 AGAATCAATGCCAAGGACAGTTA 58.078 39.130 0.00 0.00 0.00 2.24
2912 3143 4.946157 AGAATCAATGCCAAGGACAGTTAG 59.054 41.667 0.00 0.00 0.00 2.34
2914 3145 4.098914 TCAATGCCAAGGACAGTTAGTT 57.901 40.909 0.00 0.00 0.00 2.24
2915 3146 4.469657 TCAATGCCAAGGACAGTTAGTTT 58.530 39.130 0.00 0.00 0.00 2.66
2916 3147 4.278170 TCAATGCCAAGGACAGTTAGTTTG 59.722 41.667 0.00 0.00 0.00 2.93
2917 3148 3.569194 TGCCAAGGACAGTTAGTTTGA 57.431 42.857 0.00 0.00 0.00 2.69
2918 3149 3.892284 TGCCAAGGACAGTTAGTTTGAA 58.108 40.909 0.00 0.00 0.00 2.69
2919 3150 3.882888 TGCCAAGGACAGTTAGTTTGAAG 59.117 43.478 0.00 0.00 0.00 3.02
2920 3151 3.253432 GCCAAGGACAGTTAGTTTGAAGG 59.747 47.826 0.00 0.00 0.00 3.46
2921 3152 3.253432 CCAAGGACAGTTAGTTTGAAGGC 59.747 47.826 0.00 0.00 0.00 4.35
2922 3153 4.137543 CAAGGACAGTTAGTTTGAAGGCT 58.862 43.478 0.00 0.00 0.00 4.58
2923 3154 3.744660 AGGACAGTTAGTTTGAAGGCTG 58.255 45.455 0.00 0.00 0.00 4.85
2927 3158 5.179555 GGACAGTTAGTTTGAAGGCTGTAAG 59.820 44.000 0.00 0.00 37.32 2.34
2956 3298 6.564873 GCATGACTATTTGAAGACTATTCGGC 60.565 42.308 0.00 0.00 0.00 5.54
2966 3308 6.170506 TGAAGACTATTCGGCATTAACAGTT 58.829 36.000 0.00 0.00 0.00 3.16
2967 3309 7.324935 TGAAGACTATTCGGCATTAACAGTTA 58.675 34.615 0.00 0.00 0.00 2.24
2968 3310 7.277098 TGAAGACTATTCGGCATTAACAGTTAC 59.723 37.037 0.00 0.00 0.00 2.50
2969 3311 6.875076 AGACTATTCGGCATTAACAGTTACT 58.125 36.000 0.00 0.00 0.00 2.24
2970 3312 6.979238 AGACTATTCGGCATTAACAGTTACTC 59.021 38.462 0.00 0.00 0.00 2.59
2971 3313 6.047231 ACTATTCGGCATTAACAGTTACTCC 58.953 40.000 0.00 0.00 0.00 3.85
2972 3314 3.255969 TCGGCATTAACAGTTACTCCC 57.744 47.619 0.00 0.00 0.00 4.30
2973 3315 2.835764 TCGGCATTAACAGTTACTCCCT 59.164 45.455 0.00 0.00 0.00 4.20
2974 3316 3.118884 TCGGCATTAACAGTTACTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
2975 3317 3.542648 GGCATTAACAGTTACTCCCTCC 58.457 50.000 0.00 0.00 0.00 4.30
2976 3318 3.195661 GCATTAACAGTTACTCCCTCCG 58.804 50.000 0.00 0.00 0.00 4.63
2977 3319 3.369157 GCATTAACAGTTACTCCCTCCGT 60.369 47.826 0.00 0.00 0.00 4.69
2978 3320 4.828829 CATTAACAGTTACTCCCTCCGTT 58.171 43.478 0.00 0.00 0.00 4.44
2979 3321 4.525912 TTAACAGTTACTCCCTCCGTTC 57.474 45.455 0.00 0.00 0.00 3.95
2980 3322 0.886563 ACAGTTACTCCCTCCGTTCG 59.113 55.000 0.00 0.00 0.00 3.95
2981 3323 0.172803 CAGTTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
2982 3324 0.038744 AGTTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2983 3325 0.890683 GTTACTCCCTCCGTTCGGAA 59.109 55.000 14.79 0.04 33.41 4.30
2984 3326 1.479730 GTTACTCCCTCCGTTCGGAAT 59.520 52.381 14.79 2.09 33.41 3.01
2985 3327 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2986 3328 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2987 3329 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2988 3330 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2989 3331 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2990 3332 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2991 3333 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2992 3334 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2993 3335 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2994 3336 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2995 3337 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2996 3338 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2997 3339 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2998 3340 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
2999 3341 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
3000 3342 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
3001 3343 5.484715 TCGGAATTACTTGTCTCGGAAATT 58.515 37.500 0.00 0.00 0.00 1.82
3002 3344 5.350365 TCGGAATTACTTGTCTCGGAAATTG 59.650 40.000 0.00 0.00 0.00 2.32
3003 3345 5.350365 CGGAATTACTTGTCTCGGAAATTGA 59.650 40.000 0.00 0.00 0.00 2.57
3004 3346 6.037172 CGGAATTACTTGTCTCGGAAATTGAT 59.963 38.462 0.00 0.00 0.00 2.57
3005 3347 7.189512 GGAATTACTTGTCTCGGAAATTGATG 58.810 38.462 0.00 0.00 0.00 3.07
3006 3348 7.148239 GGAATTACTTGTCTCGGAAATTGATGT 60.148 37.037 0.00 0.00 0.00 3.06
3007 3349 8.786826 AATTACTTGTCTCGGAAATTGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
3008 3350 8.964476 ATTACTTGTCTCGGAAATTGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
3009 3351 6.910536 ACTTGTCTCGGAAATTGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
3010 3352 6.644347 ACTTGTCTCGGAAATTGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
3011 3353 7.782049 ACTTGTCTCGGAAATTGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
3012 3354 7.923344 ACTTGTCTCGGAAATTGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
3013 3355 7.582667 TGTCTCGGAAATTGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
3014 3356 8.007405 TGTCTCGGAAATTGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
3015 3357 7.921214 TGTCTCGGAAATTGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
3016 3358 8.138712 GTCTCGGAAATTGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
3017 3359 9.350951 TCTCGGAAATTGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
3018 3360 9.967346 CTCGGAAATTGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
3045 3387 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
3046 3388 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
3047 3389 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
3048 3390 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3049 3391 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
3050 3392 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3051 3393 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3052 3394 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3053 3395 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
3054 3396 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3055 3397 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3056 3398 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3057 3399 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
3058 3400 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
3059 3401 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
3060 3402 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
3061 3403 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
3062 3404 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
3063 3405 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
3064 3406 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3065 3407 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3066 3408 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3067 3409 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3068 3410 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3069 3411 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3070 3412 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3351 3693 9.801873 GAGGCTGCAGAACAAAATTTATTTATA 57.198 29.630 20.43 0.00 0.00 0.98
3352 3694 9.807649 AGGCTGCAGAACAAAATTTATTTATAG 57.192 29.630 20.43 0.00 0.00 1.31
3353 3695 9.801873 GGCTGCAGAACAAAATTTATTTATAGA 57.198 29.630 20.43 0.00 0.00 1.98
3418 3765 8.305046 TCTTGGGTTATAATTCAAATCCAAGG 57.695 34.615 28.00 17.61 45.79 3.61
3530 3877 5.105228 CCAGACGGTTTATTCCTAGTACCAA 60.105 44.000 0.00 0.00 0.00 3.67
3710 4057 0.715987 ACCTTGGGTATTGGGGCATT 59.284 50.000 0.00 0.00 32.11 3.56
3711 4058 1.933765 ACCTTGGGTATTGGGGCATTA 59.066 47.619 0.00 0.00 32.11 1.90
3712 4059 2.522273 ACCTTGGGTATTGGGGCATTAT 59.478 45.455 0.00 0.00 32.11 1.28
3713 4060 3.730059 ACCTTGGGTATTGGGGCATTATA 59.270 43.478 0.00 0.00 32.11 0.98
3714 4061 4.086457 CCTTGGGTATTGGGGCATTATAC 58.914 47.826 0.00 0.00 0.00 1.47
3715 4062 4.448493 CCTTGGGTATTGGGGCATTATACA 60.448 45.833 0.00 0.00 0.00 2.29
3716 4063 5.332743 CTTGGGTATTGGGGCATTATACAT 58.667 41.667 0.00 0.00 0.00 2.29
3717 4064 5.346782 TGGGTATTGGGGCATTATACATT 57.653 39.130 0.00 0.00 0.00 2.71
3776 4124 0.108804 TCAGTTCCGCTTCATCGACC 60.109 55.000 0.00 0.00 0.00 4.79
4780 5139 6.633500 TGGAACAAAACTGATCCAACTAAG 57.367 37.500 1.97 0.00 37.73 2.18
4787 5146 5.346181 AACTGATCCAACTAAGCTCCTAC 57.654 43.478 0.00 0.00 0.00 3.18
4855 5214 8.402798 TGTTTTCATTAGACCAAGCAAGATAA 57.597 30.769 0.00 0.00 0.00 1.75
4896 5256 5.310451 TGAAGTTATTCTTTTACTGCCCGT 58.690 37.500 0.00 0.00 36.40 5.28
5239 5600 9.063615 TCTTGGTGAAAAGATAAAACTACCTTC 57.936 33.333 0.00 0.00 31.19 3.46
5336 5698 9.005777 TCCTAAACTAACATGTTAATTGGACAC 57.994 33.333 18.55 0.00 0.00 3.67
5440 5802 3.306917 TCATTTGCATCAGTTTGGCTG 57.693 42.857 0.00 0.00 46.34 4.85
5812 6177 3.320541 CACCTTGCAATAACACCCAAGAA 59.679 43.478 0.00 0.00 37.46 2.52
5815 6180 4.321230 CCTTGCAATAACACCCAAGAAGAC 60.321 45.833 0.00 0.00 37.46 3.01
5971 6336 0.106149 AGACGGTGTTGACAGGGTTC 59.894 55.000 0.00 0.00 0.00 3.62
5974 6339 1.147600 GGTGTTGACAGGGTTCCGT 59.852 57.895 0.00 0.00 0.00 4.69
6027 6392 8.507249 CGGGAAGATAAATGGTGAGAATAATTC 58.493 37.037 0.00 0.00 0.00 2.17
6145 6771 4.142609 TGTTTCAGCCCAGATCAGATAC 57.857 45.455 0.00 0.00 0.00 2.24
6146 6772 3.519107 TGTTTCAGCCCAGATCAGATACA 59.481 43.478 0.00 0.00 0.00 2.29
6147 6773 3.827008 TTCAGCCCAGATCAGATACAC 57.173 47.619 0.00 0.00 0.00 2.90
6148 6774 3.037851 TCAGCCCAGATCAGATACACT 57.962 47.619 0.00 0.00 0.00 3.55
6149 6775 4.184649 TCAGCCCAGATCAGATACACTA 57.815 45.455 0.00 0.00 0.00 2.74
6150 6776 4.546674 TCAGCCCAGATCAGATACACTAA 58.453 43.478 0.00 0.00 0.00 2.24
6151 6777 4.586421 TCAGCCCAGATCAGATACACTAAG 59.414 45.833 0.00 0.00 0.00 2.18
6152 6778 4.586421 CAGCCCAGATCAGATACACTAAGA 59.414 45.833 0.00 0.00 0.00 2.10
6153 6779 5.069648 CAGCCCAGATCAGATACACTAAGAA 59.930 44.000 0.00 0.00 0.00 2.52
6157 6783 6.933521 CCCAGATCAGATACACTAAGAAATGG 59.066 42.308 0.00 0.00 0.00 3.16
6165 6791 6.599638 AGATACACTAAGAAATGGTGCTTTCC 59.400 38.462 0.00 0.00 43.84 3.13
6171 6797 3.700538 AGAAATGGTGCTTTCCATGCTA 58.299 40.909 8.82 0.00 46.14 3.49
6176 6802 2.961741 TGGTGCTTTCCATGCTAACAAA 59.038 40.909 0.00 0.00 31.96 2.83
6188 6814 6.714810 TCCATGCTAACAAACTTCACTGTAAT 59.285 34.615 0.00 0.00 0.00 1.89
6260 6896 1.361668 CGGGATGACAGAAGCCAACG 61.362 60.000 0.00 0.00 0.00 4.10
6304 6940 1.264288 CTGGACGCTCAAAGAAACCAC 59.736 52.381 0.00 0.00 0.00 4.16
6341 6977 1.566018 CGGTGCGAGTTCCTTTCCAC 61.566 60.000 0.00 0.00 0.00 4.02
6392 7028 1.787057 CGACCCCGAGAATCCGAGAG 61.787 65.000 0.00 0.00 38.22 3.20
6395 7031 1.361993 CCCGAGAATCCGAGAGCAG 59.638 63.158 0.00 0.00 0.00 4.24
6397 7033 1.299773 CGAGAATCCGAGAGCAGGC 60.300 63.158 0.00 0.00 0.00 4.85
6414 7050 3.533720 CGACCCCTCCGCATAGAA 58.466 61.111 0.00 0.00 0.00 2.10
6415 7051 1.067582 CGACCCCTCCGCATAGAAC 59.932 63.158 0.00 0.00 0.00 3.01
6475 7111 3.329929 AGTAGGTTCACCCACGAAATC 57.670 47.619 0.00 0.00 36.42 2.17
6695 7335 1.193874 CTCGTAACGTTTGGAGTTGGC 59.806 52.381 5.91 0.00 33.42 4.52
6713 7353 3.071206 GGTGAGCTCGCTCCTCCA 61.071 66.667 25.54 0.00 42.09 3.86
6719 7359 0.033991 AGCTCGCTCCTCCACTCTTA 60.034 55.000 0.00 0.00 0.00 2.10
6770 7410 3.181501 TGCCTTCGACAAGTTTGTTCTTG 60.182 43.478 0.00 5.12 46.89 3.02
6803 7443 8.484214 TTCTCTGCTAGTGATATTGGAGTTAT 57.516 34.615 0.00 0.00 0.00 1.89
6804 7444 8.116651 TCTCTGCTAGTGATATTGGAGTTATC 57.883 38.462 0.00 0.00 0.00 1.75
6805 7445 7.177568 TCTCTGCTAGTGATATTGGAGTTATCC 59.822 40.741 0.00 0.00 46.87 2.59
6868 7532 9.610705 AGTTATCTACACTAGAATACTGAACGA 57.389 33.333 0.00 0.00 38.50 3.85
6902 7566 4.973396 TGCAATAAGCTTCTGTTCGATTG 58.027 39.130 0.00 6.87 45.94 2.67
6932 7597 2.210524 GACATGTCGGCGTGAACGTG 62.211 60.000 17.69 15.31 42.22 4.49
6933 7598 2.028484 ATGTCGGCGTGAACGTGT 59.972 55.556 6.85 0.00 42.22 4.49
6934 7599 1.004785 CATGTCGGCGTGAACGTGTA 61.005 55.000 2.15 0.00 42.22 2.90
6935 7600 0.108992 ATGTCGGCGTGAACGTGTAT 60.109 50.000 6.85 0.00 42.22 2.29
6936 7601 0.730155 TGTCGGCGTGAACGTGTATC 60.730 55.000 6.85 0.00 42.22 2.24
6950 7671 2.627945 GTGTATCCGGCAACATGAGAA 58.372 47.619 11.25 0.00 0.00 2.87
6970 7691 3.560636 ACCTGAATTACGCTGGCTTAT 57.439 42.857 0.00 0.00 0.00 1.73
6971 7692 4.682778 ACCTGAATTACGCTGGCTTATA 57.317 40.909 0.00 0.00 0.00 0.98
6975 7696 4.641396 TGAATTACGCTGGCTTATAGCAT 58.359 39.130 0.67 0.00 44.75 3.79
6995 7716 6.945218 AGCATAAAAATTGCCTATTTCCACA 58.055 32.000 0.00 0.00 41.06 4.17
6996 7717 7.393216 AGCATAAAAATTGCCTATTTCCACAA 58.607 30.769 0.00 0.00 41.06 3.33
6997 7718 7.882271 AGCATAAAAATTGCCTATTTCCACAAA 59.118 29.630 0.00 0.00 41.06 2.83
6998 7719 8.177013 GCATAAAAATTGCCTATTTCCACAAAG 58.823 33.333 0.00 0.00 35.39 2.77
6999 7720 8.667463 CATAAAAATTGCCTATTTCCACAAAGG 58.333 33.333 0.00 0.00 35.39 3.11
7000 7721 4.824479 AATTGCCTATTTCCACAAAGGG 57.176 40.909 0.00 0.00 38.24 3.95
7001 7722 2.990740 TGCCTATTTCCACAAAGGGT 57.009 45.000 0.00 0.00 38.24 4.34
7002 7723 2.802719 TGCCTATTTCCACAAAGGGTC 58.197 47.619 0.00 0.00 38.24 4.46
7003 7724 2.100197 GCCTATTTCCACAAAGGGTCC 58.900 52.381 0.00 0.00 38.24 4.46
7004 7725 2.556559 GCCTATTTCCACAAAGGGTCCA 60.557 50.000 0.00 0.00 38.24 4.02
7005 7726 3.089284 CCTATTTCCACAAAGGGTCCAC 58.911 50.000 0.00 0.00 38.24 4.02
7009 7730 2.260869 CCACAAAGGGTCCACTGCG 61.261 63.158 0.00 0.00 0.00 5.18
7017 7738 1.220749 GGTCCACTGCGCATCCTAA 59.779 57.895 12.24 0.00 0.00 2.69
7139 7862 5.006941 GGTGCAAAAATACGACCATATACGT 59.993 40.000 0.00 0.00 44.72 3.57
7160 7883 0.383949 TCCTGCACGAAAAACCAAGC 59.616 50.000 0.00 0.00 0.00 4.01
7166 7889 3.067461 TGCACGAAAAACCAAGCTGTTAT 59.933 39.130 0.00 0.00 0.00 1.89
7181 7904 3.866910 GCTGTTATGGTTTGAATGGCATG 59.133 43.478 0.00 0.00 0.00 4.06
7206 7929 4.588899 AGTACTTATTTCATGCTGCACCA 58.411 39.130 3.57 0.00 0.00 4.17
7207 7930 4.637534 AGTACTTATTTCATGCTGCACCAG 59.362 41.667 3.57 0.00 34.12 4.00
7221 7944 3.157087 TGCACCAGATTTTCTTCCCTTC 58.843 45.455 0.00 0.00 0.00 3.46
7230 7953 7.363431 CAGATTTTCTTCCCTTCTTTGTACAC 58.637 38.462 0.00 0.00 0.00 2.90
7277 8000 7.117523 TGCACCAAATTTTGTATGAATACTTGC 59.882 33.333 8.26 0.00 34.41 4.01
7314 8037 5.938279 TGTTAGACATCTCGAGTATAGGGT 58.062 41.667 13.13 2.95 0.00 4.34
7316 8039 4.440826 AGACATCTCGAGTATAGGGTGT 57.559 45.455 13.13 0.00 0.00 4.16
7323 8046 1.067212 CGAGTATAGGGTGTGAGTGGC 59.933 57.143 0.00 0.00 0.00 5.01
7324 8047 2.389715 GAGTATAGGGTGTGAGTGGCT 58.610 52.381 0.00 0.00 0.00 4.75
7326 8049 2.501723 AGTATAGGGTGTGAGTGGCTTG 59.498 50.000 0.00 0.00 0.00 4.01
7327 8050 1.362224 ATAGGGTGTGAGTGGCTTGT 58.638 50.000 0.00 0.00 0.00 3.16
7329 8052 1.152963 GGGTGTGAGTGGCTTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
7330 8053 1.447317 GGGTGTGAGTGGCTTGTGTG 61.447 60.000 0.00 0.00 0.00 3.82
7331 8054 1.356624 GTGTGAGTGGCTTGTGTGC 59.643 57.895 0.00 0.00 0.00 4.57
7332 8055 1.097547 GTGTGAGTGGCTTGTGTGCT 61.098 55.000 0.00 0.00 0.00 4.40
7334 8057 0.868406 GTGAGTGGCTTGTGTGCTAC 59.132 55.000 0.00 0.00 43.38 3.58
7403 8157 1.875514 TCTGAACATGAGCTTGTGTGC 59.124 47.619 0.00 4.85 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.783093 TCTATGGCCGTCTTTTCAATAATATTG 58.217 33.333 0.00 6.65 0.00 1.90
3 4 8.784043 GTCTATGGCCGTCTTTTCAATAATATT 58.216 33.333 0.00 0.00 0.00 1.28
4 5 7.936847 TGTCTATGGCCGTCTTTTCAATAATAT 59.063 33.333 0.00 0.00 0.00 1.28
5 6 7.276658 TGTCTATGGCCGTCTTTTCAATAATA 58.723 34.615 0.00 0.00 0.00 0.98
6 7 6.119536 TGTCTATGGCCGTCTTTTCAATAAT 58.880 36.000 0.00 0.00 0.00 1.28
7 8 5.492895 TGTCTATGGCCGTCTTTTCAATAA 58.507 37.500 0.00 0.00 0.00 1.40
8 9 5.092554 TGTCTATGGCCGTCTTTTCAATA 57.907 39.130 0.00 0.00 0.00 1.90
9 10 3.950397 TGTCTATGGCCGTCTTTTCAAT 58.050 40.909 0.00 0.00 0.00 2.57
10 11 3.410631 TGTCTATGGCCGTCTTTTCAA 57.589 42.857 0.00 0.00 0.00 2.69
12 13 4.023536 TGTTTTGTCTATGGCCGTCTTTTC 60.024 41.667 0.00 0.00 0.00 2.29
13 14 3.886505 TGTTTTGTCTATGGCCGTCTTTT 59.113 39.130 0.00 0.00 0.00 2.27
14 15 3.482436 TGTTTTGTCTATGGCCGTCTTT 58.518 40.909 0.00 0.00 0.00 2.52
19 20 6.559810 TGAAATATTGTTTTGTCTATGGCCG 58.440 36.000 0.00 0.00 0.00 6.13
21 22 6.980397 CCCTGAAATATTGTTTTGTCTATGGC 59.020 38.462 0.00 0.00 0.00 4.40
22 23 6.980397 GCCCTGAAATATTGTTTTGTCTATGG 59.020 38.462 0.00 0.00 0.00 2.74
24 25 6.377146 ACGCCCTGAAATATTGTTTTGTCTAT 59.623 34.615 0.00 0.00 0.00 1.98
25 26 5.708230 ACGCCCTGAAATATTGTTTTGTCTA 59.292 36.000 0.00 0.00 0.00 2.59
26 27 4.522789 ACGCCCTGAAATATTGTTTTGTCT 59.477 37.500 0.00 0.00 0.00 3.41
29 30 7.826260 AATAACGCCCTGAAATATTGTTTTG 57.174 32.000 0.00 0.00 0.00 2.44
30 31 8.745590 ACTAATAACGCCCTGAAATATTGTTTT 58.254 29.630 0.00 0.00 0.00 2.43
31 32 8.288689 ACTAATAACGCCCTGAAATATTGTTT 57.711 30.769 0.00 0.00 0.00 2.83
32 33 7.875327 ACTAATAACGCCCTGAAATATTGTT 57.125 32.000 0.00 0.00 0.00 2.83
33 34 7.875327 AACTAATAACGCCCTGAAATATTGT 57.125 32.000 0.00 0.00 0.00 2.71
34 35 9.581099 AAAAACTAATAACGCCCTGAAATATTG 57.419 29.630 0.00 0.00 0.00 1.90
60 61 6.351796 GGGTTAATGTACTTTACCGAGGGTAA 60.352 42.308 3.19 3.19 45.16 2.85
61 62 5.128663 GGGTTAATGTACTTTACCGAGGGTA 59.871 44.000 0.90 0.00 37.40 3.69
63 64 4.080975 TGGGTTAATGTACTTTACCGAGGG 60.081 45.833 0.90 0.00 37.40 4.30
64 65 4.872124 GTGGGTTAATGTACTTTACCGAGG 59.128 45.833 0.90 0.00 37.40 4.63
65 66 4.872124 GGTGGGTTAATGTACTTTACCGAG 59.128 45.833 0.90 0.00 37.40 4.63
66 67 4.831107 GGTGGGTTAATGTACTTTACCGA 58.169 43.478 0.90 2.14 37.40 4.69
67 68 3.618150 CGGTGGGTTAATGTACTTTACCG 59.382 47.826 14.59 14.59 37.40 4.02
68 69 4.831107 TCGGTGGGTTAATGTACTTTACC 58.169 43.478 0.90 6.27 36.09 2.85
69 70 6.990341 ATTCGGTGGGTTAATGTACTTTAC 57.010 37.500 0.90 0.00 0.00 2.01
70 71 7.769970 CCTAATTCGGTGGGTTAATGTACTTTA 59.230 37.037 0.00 0.00 0.00 1.85
71 72 6.600427 CCTAATTCGGTGGGTTAATGTACTTT 59.400 38.462 0.00 0.00 0.00 2.66
72 73 6.117488 CCTAATTCGGTGGGTTAATGTACTT 58.883 40.000 0.00 0.00 0.00 2.24
73 74 5.190330 ACCTAATTCGGTGGGTTAATGTACT 59.810 40.000 0.00 0.00 35.52 2.73
74 75 5.430886 ACCTAATTCGGTGGGTTAATGTAC 58.569 41.667 0.00 0.00 35.52 2.90
76 77 4.579647 ACCTAATTCGGTGGGTTAATGT 57.420 40.909 0.00 0.00 35.52 2.71
87 88 3.028850 TCTCCACACCTACCTAATTCGG 58.971 50.000 0.00 0.00 0.00 4.30
89 90 5.880887 CCTTTTCTCCACACCTACCTAATTC 59.119 44.000 0.00 0.00 0.00 2.17
90 91 5.806734 GCCTTTTCTCCACACCTACCTAATT 60.807 44.000 0.00 0.00 0.00 1.40
91 92 4.324331 GCCTTTTCTCCACACCTACCTAAT 60.324 45.833 0.00 0.00 0.00 1.73
92 93 3.008704 GCCTTTTCTCCACACCTACCTAA 59.991 47.826 0.00 0.00 0.00 2.69
103 104 2.857483 TCATTGTTCGCCTTTTCTCCA 58.143 42.857 0.00 0.00 0.00 3.86
106 107 2.557924 TGCATCATTGTTCGCCTTTTCT 59.442 40.909 0.00 0.00 0.00 2.52
107 108 2.945278 TGCATCATTGTTCGCCTTTTC 58.055 42.857 0.00 0.00 0.00 2.29
112 113 2.375110 CGTTATGCATCATTGTTCGCC 58.625 47.619 0.19 0.00 0.00 5.54
147 148 5.802956 TCCAAAGACGAACAACAAATTTCAC 59.197 36.000 0.00 0.00 0.00 3.18
167 168 6.419484 TCTCAACTTCACTATGTCTTCCAA 57.581 37.500 0.00 0.00 0.00 3.53
171 172 7.238486 ACAGATCTCAACTTCACTATGTCTT 57.762 36.000 0.00 0.00 0.00 3.01
173 174 6.252441 CGAACAGATCTCAACTTCACTATGTC 59.748 42.308 0.00 0.00 0.00 3.06
175 176 6.252441 GTCGAACAGATCTCAACTTCACTATG 59.748 42.308 0.00 0.00 0.00 2.23
259 260 8.035394 GGATAATCGGATAGATGCTACTCAAAA 58.965 37.037 0.00 0.00 40.02 2.44
260 261 7.178451 TGGATAATCGGATAGATGCTACTCAAA 59.822 37.037 0.00 0.00 40.02 2.69
269 270 5.129320 TGTCCCATGGATAATCGGATAGATG 59.871 44.000 15.22 0.00 35.09 2.90
290 291 4.789012 TCTTGGCCATTGATTTTCTGTC 57.211 40.909 6.09 0.00 0.00 3.51
291 292 4.161001 GGATCTTGGCCATTGATTTTCTGT 59.839 41.667 18.89 0.88 0.00 3.41
292 293 4.160814 TGGATCTTGGCCATTGATTTTCTG 59.839 41.667 18.89 0.00 0.00 3.02
295 296 5.901276 AGTATGGATCTTGGCCATTGATTTT 59.099 36.000 18.89 11.44 43.42 1.82
321 324 5.683743 CCGCTGAAACTTTCAAATTTCGTTA 59.316 36.000 5.72 0.00 39.58 3.18
438 445 9.691362 TGTCAGCTGTAAATTTATTTTTCTTCC 57.309 29.630 14.67 0.00 0.00 3.46
606 622 1.056660 GGTCTGTTTGGTCTCTCCCA 58.943 55.000 0.00 0.00 34.77 4.37
663 679 4.677151 GGAGGGGGAGGGTGGTGT 62.677 72.222 0.00 0.00 0.00 4.16
808 832 1.444553 GACTCCGGACTCAACAGCG 60.445 63.158 0.00 0.00 0.00 5.18
1241 1274 8.776470 CAATTTTTGCTTGAAAATCATACTGGT 58.224 29.630 6.51 0.00 38.04 4.00
1544 1605 2.651455 GGTACAAGACCCATTAAGGCC 58.349 52.381 0.00 0.00 43.25 5.19
1571 1632 1.627329 AGCAGACTCTTTCCATCAGCA 59.373 47.619 0.00 0.00 0.00 4.41
1812 1876 6.647895 GGAGTAACACTCTTAATTTCGACCAA 59.352 38.462 6.30 0.00 44.46 3.67
2002 2069 6.408035 TCACTAACACAACACTAACTTTCCA 58.592 36.000 0.00 0.00 0.00 3.53
2013 2080 9.386010 ACAGTTTAGTTAATCACTAACACAACA 57.614 29.630 0.00 0.00 45.97 3.33
2145 2296 8.336235 ACCTACAAATTCTCCATTAATGAGGAA 58.664 33.333 17.23 17.91 32.57 3.36
2200 2351 3.194861 GGACCAAAAGGAAACACAAAGC 58.805 45.455 0.00 0.00 0.00 3.51
2749 2900 7.395772 TGATGCATTTAAACCATTCTACAAGGA 59.604 33.333 0.00 0.00 0.00 3.36
2820 2971 5.817296 TGACACAAGCATATCTTATGTGTCC 59.183 40.000 25.60 13.72 46.92 4.02
2843 3073 5.278169 CCTTACAGCATGCTTAATAGGCTTG 60.278 44.000 19.98 6.06 42.53 4.01
2844 3074 4.823989 CCTTACAGCATGCTTAATAGGCTT 59.176 41.667 19.98 0.00 42.53 4.35
2895 3126 4.469657 TCAAACTAACTGTCCTTGGCATT 58.530 39.130 0.00 0.00 0.00 3.56
2910 3141 3.440173 GCATGCTTACAGCCTTCAAACTA 59.560 43.478 11.37 0.00 41.51 2.24
2911 3142 2.229784 GCATGCTTACAGCCTTCAAACT 59.770 45.455 11.37 0.00 41.51 2.66
2912 3143 2.030007 TGCATGCTTACAGCCTTCAAAC 60.030 45.455 20.33 0.00 41.51 2.93
2914 3145 1.908344 TGCATGCTTACAGCCTTCAA 58.092 45.000 20.33 0.00 41.51 2.69
2915 3146 1.746787 CATGCATGCTTACAGCCTTCA 59.253 47.619 20.33 0.00 41.51 3.02
2916 3147 2.019249 TCATGCATGCTTACAGCCTTC 58.981 47.619 22.25 0.00 41.51 3.46
2917 3148 1.747355 GTCATGCATGCTTACAGCCTT 59.253 47.619 22.25 0.00 41.51 4.35
2918 3149 1.064906 AGTCATGCATGCTTACAGCCT 60.065 47.619 22.25 2.79 41.51 4.58
2919 3150 1.386533 AGTCATGCATGCTTACAGCC 58.613 50.000 22.25 0.38 41.51 4.85
2920 3151 4.825546 AATAGTCATGCATGCTTACAGC 57.174 40.909 22.25 4.47 42.82 4.40
2921 3152 6.367686 TCAAATAGTCATGCATGCTTACAG 57.632 37.500 22.25 12.32 0.00 2.74
2922 3153 6.598850 TCTTCAAATAGTCATGCATGCTTACA 59.401 34.615 22.25 7.96 0.00 2.41
2923 3154 6.909357 GTCTTCAAATAGTCATGCATGCTTAC 59.091 38.462 22.25 14.78 0.00 2.34
2927 3158 5.496133 AGTCTTCAAATAGTCATGCATGC 57.504 39.130 22.25 11.82 0.00 4.06
2928 3159 8.008279 CGAATAGTCTTCAAATAGTCATGCATG 58.992 37.037 21.07 21.07 0.00 4.06
2956 3298 4.467198 ACGGAGGGAGTAACTGTTAATG 57.533 45.455 5.12 0.00 0.00 1.90
2966 3308 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2967 3309 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2968 3310 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2969 3311 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2970 3312 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2971 3313 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2972 3314 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2973 3315 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2974 3316 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2975 3317 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2976 3318 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2977 3319 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2978 3320 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2979 3321 5.350365 TCAATTTCCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
2980 3322 6.737254 TCAATTTCCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2981 3323 7.752695 ACATCAATTTCCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2982 3324 7.687941 ACATCAATTTCCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2983 3325 8.964476 ATACATCAATTTCCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
2984 3326 8.258007 AGATACATCAATTTCCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2985 3327 7.782049 AGATACATCAATTTCCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
2986 3328 6.644347 AGATACATCAATTTCCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
2987 3329 8.138074 TCTAGATACATCAATTTCCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
2988 3330 8.007405 TCTAGATACATCAATTTCCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
2989 3331 7.582667 TCTAGATACATCAATTTCCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
2990 3332 8.138712 AGTTCTAGATACATCAATTTCCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
2991 3333 8.239038 AGTTCTAGATACATCAATTTCCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
2992 3334 9.967346 TTAGTTCTAGATACATCAATTTCCGAG 57.033 33.333 0.00 0.00 0.00 4.63
3019 3361 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
3020 3362 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
3021 3363 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
3022 3364 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
3023 3365 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
3024 3366 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
3025 3367 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3026 3368 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
3027 3369 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
3028 3370 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
3029 3371 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3030 3372 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3031 3373 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3032 3374 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3033 3375 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3034 3376 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
3035 3377 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
3036 3378 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
3037 3379 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3038 3380 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3039 3381 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3040 3382 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3041 3383 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
3042 3384 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
3043 3385 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
3044 3386 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3045 3387 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3046 3388 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3047 3389 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3048 3390 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3049 3391 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3050 3392 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3051 3393 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3052 3394 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3053 3395 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3054 3396 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
3055 3397 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
3056 3398 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
3057 3399 0.893447 AAACTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
3058 3400 1.271656 ACAAACTACTCCCTCCGTTCG 59.728 52.381 0.00 0.00 0.00 3.95
3059 3401 4.159135 TCATACAAACTACTCCCTCCGTTC 59.841 45.833 0.00 0.00 0.00 3.95
3060 3402 4.091549 TCATACAAACTACTCCCTCCGTT 58.908 43.478 0.00 0.00 0.00 4.44
3061 3403 3.705051 TCATACAAACTACTCCCTCCGT 58.295 45.455 0.00 0.00 0.00 4.69
3062 3404 4.730949 TTCATACAAACTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
3063 3405 6.316390 CACATTTCATACAAACTACTCCCTCC 59.684 42.308 0.00 0.00 0.00 4.30
3064 3406 6.879458 ACACATTTCATACAAACTACTCCCTC 59.121 38.462 0.00 0.00 0.00 4.30
3065 3407 6.779860 ACACATTTCATACAAACTACTCCCT 58.220 36.000 0.00 0.00 0.00 4.20
3066 3408 6.653320 TGACACATTTCATACAAACTACTCCC 59.347 38.462 0.00 0.00 0.00 4.30
3067 3409 7.172532 TGTGACACATTTCATACAAACTACTCC 59.827 37.037 3.56 0.00 0.00 3.85
3068 3410 8.083462 TGTGACACATTTCATACAAACTACTC 57.917 34.615 3.56 0.00 0.00 2.59
3069 3411 7.715249 ACTGTGACACATTTCATACAAACTACT 59.285 33.333 9.11 0.00 0.00 2.57
3070 3412 7.861630 ACTGTGACACATTTCATACAAACTAC 58.138 34.615 9.11 0.00 0.00 2.73
3351 3693 4.340617 CCTCCAGTCTCTGTACTTTCTCT 58.659 47.826 0.00 0.00 0.00 3.10
3352 3694 3.119280 GCCTCCAGTCTCTGTACTTTCTC 60.119 52.174 0.00 0.00 0.00 2.87
3353 3695 2.829120 GCCTCCAGTCTCTGTACTTTCT 59.171 50.000 0.00 0.00 0.00 2.52
3354 3696 2.093921 GGCCTCCAGTCTCTGTACTTTC 60.094 54.545 0.00 0.00 0.00 2.62
3530 3877 2.254546 TCATCAAACAGACCGTTGCT 57.745 45.000 0.00 0.00 38.07 3.91
3776 4124 1.202336 GGAAGCAATCATGAAAGCGGG 60.202 52.381 14.65 0.00 0.00 6.13
4693 5052 6.884295 CCAGTATTCAAATTAACCAGTCCAGA 59.116 38.462 0.00 0.00 0.00 3.86
4752 5111 3.636300 TGGATCAGTTTTGTTCCAAGGTG 59.364 43.478 5.16 0.00 45.67 4.00
4758 5117 5.241728 AGCTTAGTTGGATCAGTTTTGTTCC 59.758 40.000 0.00 0.00 41.60 3.62
4780 5139 7.817418 TGTTGATATTAATTTGGGTAGGAGC 57.183 36.000 0.00 0.00 0.00 4.70
5239 5600 2.069273 GATGTTCTGTTCCTGGACACG 58.931 52.381 0.00 0.00 0.00 4.49
5336 5698 8.543862 TGCAAGCATCTGAAATACTATATCTG 57.456 34.615 0.00 0.00 0.00 2.90
5440 5802 4.590850 AATGAGAAACCAGAAAACAGGC 57.409 40.909 0.00 0.00 0.00 4.85
5522 5884 8.890718 TCTTTCAAATTTGCAACAAAATGATCA 58.109 25.926 13.54 0.00 30.21 2.92
5582 5947 4.819761 TGGATCGACAGCGCTGCC 62.820 66.667 36.28 27.44 37.46 4.85
5587 5952 5.006649 TCAAAATAAATCTGGATCGACAGCG 59.993 40.000 0.00 0.00 38.36 5.18
5812 6177 2.786445 TGGAGAGGCAGGTCTATAGTCT 59.214 50.000 0.00 0.00 0.00 3.24
5815 6180 2.109128 TCCTGGAGAGGCAGGTCTATAG 59.891 54.545 0.00 0.00 39.57 1.31
5870 6235 8.258007 TGAAGTTCTATAATCTGATCCAAACGT 58.742 33.333 4.17 0.00 0.00 3.99
6027 6392 5.129485 TGGAAGGGTAGAAAGATCTTAGCAG 59.871 44.000 8.75 0.00 37.10 4.24
6145 6771 5.404946 CATGGAAAGCACCATTTCTTAGTG 58.595 41.667 7.24 0.00 47.00 2.74
6146 6772 4.082026 GCATGGAAAGCACCATTTCTTAGT 60.082 41.667 7.24 0.00 47.00 2.24
6147 6773 4.159135 AGCATGGAAAGCACCATTTCTTAG 59.841 41.667 7.24 0.00 47.00 2.18
6148 6774 4.088634 AGCATGGAAAGCACCATTTCTTA 58.911 39.130 7.24 0.00 47.00 2.10
6149 6775 2.901839 AGCATGGAAAGCACCATTTCTT 59.098 40.909 7.24 0.00 47.00 2.52
6150 6776 2.532843 AGCATGGAAAGCACCATTTCT 58.467 42.857 7.24 5.69 47.00 2.52
6151 6777 4.176271 GTTAGCATGGAAAGCACCATTTC 58.824 43.478 7.24 0.00 47.00 2.17
6152 6778 3.577848 TGTTAGCATGGAAAGCACCATTT 59.422 39.130 7.24 3.20 47.00 2.32
6153 6779 3.164268 TGTTAGCATGGAAAGCACCATT 58.836 40.909 7.24 0.00 47.00 3.16
6157 6783 4.243007 AGTTTGTTAGCATGGAAAGCAC 57.757 40.909 0.00 0.00 0.00 4.40
6165 6791 7.023575 GGATTACAGTGAAGTTTGTTAGCATG 58.976 38.462 0.00 0.00 0.00 4.06
6171 6797 6.204108 CGTTAGGGATTACAGTGAAGTTTGTT 59.796 38.462 0.00 0.00 0.00 2.83
6176 6802 5.479124 AACGTTAGGGATTACAGTGAAGT 57.521 39.130 0.00 0.00 0.00 3.01
6188 6814 3.562557 GCAACAGAAGAAAACGTTAGGGA 59.437 43.478 0.00 0.00 0.00 4.20
6294 6930 1.029681 GGTTGCTCCGTGGTTTCTTT 58.970 50.000 0.00 0.00 0.00 2.52
6319 6955 2.444700 GAAAGGAACTCGCACCGGGA 62.445 60.000 6.32 0.00 38.49 5.14
6327 6963 2.417719 CTTCTGGTGGAAAGGAACTCG 58.582 52.381 0.00 0.00 38.49 4.18
6341 6977 1.246737 GGCCTTTCCACAGCTTCTGG 61.247 60.000 0.00 1.11 35.51 3.86
6370 7006 3.467226 GGATTCTCGGGGTCGCCA 61.467 66.667 6.75 0.00 36.13 5.69
6397 7033 1.067582 GTTCTATGCGGAGGGGTCG 59.932 63.158 0.00 0.00 0.00 4.79
6414 7050 3.584848 ACTCTGGCCTTCTAATCAACAGT 59.415 43.478 3.32 0.00 0.00 3.55
6415 7051 4.187694 GACTCTGGCCTTCTAATCAACAG 58.812 47.826 3.32 0.00 0.00 3.16
6475 7111 6.601613 TGAATAGGGTGGCTTTGTTATTACAG 59.398 38.462 0.00 0.00 35.28 2.74
6557 7193 0.528684 GGACTGACCGATGCTACAGC 60.529 60.000 0.00 0.00 42.50 4.40
6558 7194 0.103208 GGGACTGACCGATGCTACAG 59.897 60.000 0.00 0.00 40.11 2.74
6666 7302 8.538409 ACTCCAAACGTTACGAGTAAAATAAT 57.462 30.769 22.11 2.63 33.87 1.28
6677 7317 0.111001 CGCCAACTCCAAACGTTACG 60.111 55.000 0.00 2.19 0.00 3.18
6695 7335 4.200283 GGAGGAGCGAGCTCACCG 62.200 72.222 24.21 1.05 44.40 4.94
6713 7353 7.399191 TCACTGGTTCCACATATTAGTAAGAGT 59.601 37.037 0.00 0.00 0.00 3.24
6719 7359 7.092623 TGGTAATCACTGGTTCCACATATTAGT 60.093 37.037 0.00 0.00 0.00 2.24
6770 7410 4.785511 TCACTAGCAGAGAAACAGGTAC 57.214 45.455 0.00 0.00 0.00 3.34
6803 7443 6.552725 AGCTTCATCATCTACTGTTATCTGGA 59.447 38.462 0.00 0.00 0.00 3.86
6804 7444 6.645827 CAGCTTCATCATCTACTGTTATCTGG 59.354 42.308 0.00 0.00 0.00 3.86
6805 7445 7.208777 ACAGCTTCATCATCTACTGTTATCTG 58.791 38.462 0.00 0.00 34.89 2.90
6806 7446 7.358770 ACAGCTTCATCATCTACTGTTATCT 57.641 36.000 0.00 0.00 34.89 1.98
6807 7447 8.430801 AAACAGCTTCATCATCTACTGTTATC 57.569 34.615 6.62 0.00 45.00 1.75
6808 7448 7.223582 CGAAACAGCTTCATCATCTACTGTTAT 59.776 37.037 6.62 0.00 45.00 1.89
6811 7451 4.867047 CGAAACAGCTTCATCATCTACTGT 59.133 41.667 0.00 0.00 39.92 3.55
6875 7539 1.341383 ACAGAAGCTTATTGCAGGGGG 60.341 52.381 0.00 0.00 45.94 5.40
6876 7540 2.134789 ACAGAAGCTTATTGCAGGGG 57.865 50.000 0.00 0.00 45.94 4.79
6877 7541 2.096496 CGAACAGAAGCTTATTGCAGGG 59.904 50.000 0.00 0.00 45.94 4.45
6902 7566 1.609932 CGACATGTCAATGCAACAGC 58.390 50.000 24.93 0.00 37.29 4.40
6932 7597 1.940613 GGTTCTCATGTTGCCGGATAC 59.059 52.381 5.05 1.75 0.00 2.24
6933 7598 1.837439 AGGTTCTCATGTTGCCGGATA 59.163 47.619 5.05 0.00 0.00 2.59
6934 7599 0.620556 AGGTTCTCATGTTGCCGGAT 59.379 50.000 5.05 0.00 0.00 4.18
6935 7600 0.321564 CAGGTTCTCATGTTGCCGGA 60.322 55.000 5.05 0.00 0.00 5.14
6936 7601 0.321564 TCAGGTTCTCATGTTGCCGG 60.322 55.000 0.00 0.00 0.00 6.13
6950 7671 3.560636 ATAAGCCAGCGTAATTCAGGT 57.439 42.857 0.00 0.00 0.00 4.00
6970 7691 8.072321 TGTGGAAATAGGCAATTTTTATGCTA 57.928 30.769 0.00 0.00 43.34 3.49
6971 7692 6.945218 TGTGGAAATAGGCAATTTTTATGCT 58.055 32.000 0.00 0.00 43.34 3.79
6975 7696 7.164803 CCCTTTGTGGAAATAGGCAATTTTTA 58.835 34.615 0.00 0.00 37.93 1.52
6995 7716 1.675641 GATGCGCAGTGGACCCTTT 60.676 57.895 18.32 0.00 0.00 3.11
6996 7717 2.045926 GATGCGCAGTGGACCCTT 60.046 61.111 18.32 0.00 0.00 3.95
6997 7718 4.101448 GGATGCGCAGTGGACCCT 62.101 66.667 18.32 0.00 0.00 4.34
6998 7719 2.252072 TTAGGATGCGCAGTGGACCC 62.252 60.000 18.32 9.73 0.00 4.46
6999 7720 0.392461 TTTAGGATGCGCAGTGGACC 60.392 55.000 18.32 13.59 0.00 4.46
7000 7721 0.727398 GTTTAGGATGCGCAGTGGAC 59.273 55.000 18.32 5.95 0.00 4.02
7001 7722 0.613260 AGTTTAGGATGCGCAGTGGA 59.387 50.000 18.32 0.00 0.00 4.02
7002 7723 1.009829 GAGTTTAGGATGCGCAGTGG 58.990 55.000 18.32 0.00 0.00 4.00
7003 7724 0.647410 CGAGTTTAGGATGCGCAGTG 59.353 55.000 18.32 0.00 0.00 3.66
7004 7725 0.530744 TCGAGTTTAGGATGCGCAGT 59.469 50.000 18.32 5.49 0.00 4.40
7005 7726 1.202302 TCTCGAGTTTAGGATGCGCAG 60.202 52.381 18.32 0.00 0.00 5.18
7009 7730 7.144569 AAAACGCATCTCGAGTTTAGGATGC 62.145 44.000 19.60 19.60 45.52 3.91
7017 7738 2.338500 GGAGAAAACGCATCTCGAGTT 58.662 47.619 13.13 0.15 43.43 3.01
7063 7786 4.461431 TGATGTTCATGCATGCTTCTTCTT 59.539 37.500 22.25 5.22 0.00 2.52
7065 7788 4.365899 TGATGTTCATGCATGCTTCTTC 57.634 40.909 22.25 18.49 0.00 2.87
7111 7834 4.386867 TGGTCGTATTTTTGCACCAAAA 57.613 36.364 0.00 0.00 40.85 2.44
7127 7850 1.066454 TGCAGGACACGTATATGGTCG 59.934 52.381 0.00 0.00 32.39 4.79
7139 7862 1.403679 CTTGGTTTTTCGTGCAGGACA 59.596 47.619 8.96 0.00 0.00 4.02
7160 7883 3.866910 GCATGCCATTCAAACCATAACAG 59.133 43.478 6.36 0.00 0.00 3.16
7166 7889 2.806434 ACTAGCATGCCATTCAAACCA 58.194 42.857 15.66 0.00 0.00 3.67
7181 7904 5.277538 GGTGCAGCATGAAATAAGTACTAGC 60.278 44.000 11.86 0.00 39.69 3.42
7206 7929 7.060421 TGTGTACAAAGAAGGGAAGAAAATCT 58.940 34.615 0.00 0.00 0.00 2.40
7207 7930 7.272037 TGTGTACAAAGAAGGGAAGAAAATC 57.728 36.000 0.00 0.00 0.00 2.17
7277 8000 4.383173 TGTCTAACATCATGCTGCTATGG 58.617 43.478 0.00 0.00 0.00 2.74
7314 8037 0.467804 TAGCACACAAGCCACTCACA 59.532 50.000 0.00 0.00 34.23 3.58
7316 8039 0.467804 TGTAGCACACAAGCCACTCA 59.532 50.000 0.00 0.00 32.95 3.41
7324 8047 2.752354 AGCAACAGTTTGTAGCACACAA 59.248 40.909 0.15 0.15 45.49 3.33
7326 8049 3.108144 CAAGCAACAGTTTGTAGCACAC 58.892 45.455 0.00 0.00 34.90 3.82
7327 8050 2.752354 ACAAGCAACAGTTTGTAGCACA 59.248 40.909 0.00 0.00 35.36 4.57
7329 8052 2.357637 GGACAAGCAACAGTTTGTAGCA 59.642 45.455 0.00 0.00 36.92 3.49
7330 8053 2.287608 GGGACAAGCAACAGTTTGTAGC 60.288 50.000 0.00 0.00 36.92 3.58
7331 8054 2.293399 GGGGACAAGCAACAGTTTGTAG 59.707 50.000 0.00 0.00 36.92 2.74
7332 8055 2.092103 AGGGGACAAGCAACAGTTTGTA 60.092 45.455 0.00 0.00 36.92 2.41
7334 8057 1.067516 CAGGGGACAAGCAACAGTTTG 59.932 52.381 0.00 0.00 35.62 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.