Multiple sequence alignment - TraesCS7A01G339300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G339300 | chr7A | 100.000 | 4707 | 0 | 0 | 1 | 4707 | 496966686 | 496961980 | 0.000000e+00 | 8693.0 |
1 | TraesCS7A01G339300 | chr7A | 80.645 | 310 | 53 | 6 | 3257 | 3564 | 497277484 | 497277180 | 2.830000e-57 | 233.0 |
2 | TraesCS7A01G339300 | chr7B | 87.470 | 2067 | 176 | 40 | 2679 | 4707 | 462808544 | 462806523 | 0.000000e+00 | 2305.0 |
3 | TraesCS7A01G339300 | chr7B | 88.722 | 1534 | 128 | 23 | 1821 | 3338 | 462810047 | 462808543 | 0.000000e+00 | 1832.0 |
4 | TraesCS7A01G339300 | chr7B | 87.800 | 1418 | 112 | 30 | 180 | 1589 | 462812442 | 462811078 | 0.000000e+00 | 1604.0 |
5 | TraesCS7A01G339300 | chr7B | 91.935 | 186 | 12 | 1 | 1 | 183 | 711060281 | 711060096 | 1.680000e-64 | 257.0 |
6 | TraesCS7A01G339300 | chr7B | 81.410 | 312 | 48 | 9 | 3257 | 3564 | 463034823 | 463034518 | 3.640000e-61 | 246.0 |
7 | TraesCS7A01G339300 | chr7D | 87.173 | 2066 | 168 | 49 | 2679 | 4707 | 446307907 | 446305902 | 0.000000e+00 | 2257.0 |
8 | TraesCS7A01G339300 | chr7D | 89.154 | 1383 | 110 | 23 | 1821 | 3193 | 446309567 | 446308215 | 0.000000e+00 | 1687.0 |
9 | TraesCS7A01G339300 | chr7D | 87.438 | 1417 | 115 | 26 | 180 | 1589 | 446311944 | 446310584 | 0.000000e+00 | 1572.0 |
10 | TraesCS7A01G339300 | chr7D | 86.310 | 168 | 12 | 1 | 1651 | 1818 | 446309777 | 446309621 | 6.260000e-39 | 172.0 |
11 | TraesCS7A01G339300 | chr7D | 95.238 | 63 | 3 | 0 | 3276 | 3338 | 446307968 | 446307906 | 3.000000e-17 | 100.0 |
12 | TraesCS7A01G339300 | chr6B | 92.857 | 182 | 13 | 0 | 1 | 182 | 188830879 | 188831060 | 1.000000e-66 | 265.0 |
13 | TraesCS7A01G339300 | chr6B | 81.884 | 276 | 46 | 4 | 3259 | 3532 | 136450174 | 136449901 | 3.660000e-56 | 230.0 |
14 | TraesCS7A01G339300 | chr4B | 92.857 | 182 | 13 | 0 | 1 | 182 | 387492050 | 387491869 | 1.000000e-66 | 265.0 |
15 | TraesCS7A01G339300 | chr4B | 91.579 | 190 | 15 | 1 | 1 | 190 | 630085106 | 630084918 | 1.300000e-65 | 261.0 |
16 | TraesCS7A01G339300 | chr3A | 92.021 | 188 | 14 | 1 | 1 | 188 | 490624352 | 490624538 | 3.610000e-66 | 263.0 |
17 | TraesCS7A01G339300 | chr3B | 92.308 | 182 | 14 | 0 | 1 | 182 | 480377021 | 480377202 | 4.670000e-65 | 259.0 |
18 | TraesCS7A01G339300 | chr3B | 92.350 | 183 | 13 | 1 | 1 | 183 | 731036857 | 731036676 | 4.670000e-65 | 259.0 |
19 | TraesCS7A01G339300 | chr3B | 77.869 | 366 | 69 | 7 | 622 | 977 | 723654266 | 723654629 | 2.850000e-52 | 217.0 |
20 | TraesCS7A01G339300 | chr3B | 73.188 | 276 | 66 | 7 | 603 | 873 | 810259930 | 810260202 | 5.020000e-15 | 93.5 |
21 | TraesCS7A01G339300 | chr6D | 91.758 | 182 | 15 | 0 | 1 | 182 | 426154542 | 426154723 | 2.170000e-63 | 254.0 |
22 | TraesCS7A01G339300 | chr6D | 73.684 | 570 | 127 | 18 | 418 | 971 | 320111086 | 320111648 | 2.870000e-47 | 200.0 |
23 | TraesCS7A01G339300 | chr6D | 73.356 | 593 | 115 | 35 | 527 | 1097 | 336512048 | 336511477 | 3.740000e-41 | 180.0 |
24 | TraesCS7A01G339300 | chr3D | 91.758 | 182 | 15 | 0 | 1 | 182 | 369414242 | 369414423 | 2.170000e-63 | 254.0 |
25 | TraesCS7A01G339300 | chrUn | 76.800 | 375 | 77 | 6 | 614 | 980 | 375573964 | 375573592 | 7.990000e-48 | 202.0 |
26 | TraesCS7A01G339300 | chr5D | 70.926 | 540 | 130 | 22 | 567 | 1089 | 449346941 | 449347470 | 8.330000e-18 | 102.0 |
27 | TraesCS7A01G339300 | chr1D | 73.958 | 288 | 59 | 11 | 400 | 675 | 439759014 | 439759297 | 8.330000e-18 | 102.0 |
28 | TraesCS7A01G339300 | chr2B | 75.455 | 220 | 37 | 14 | 886 | 1097 | 749207232 | 749207442 | 1.800000e-14 | 91.6 |
29 | TraesCS7A01G339300 | chr5B | 89.655 | 58 | 6 | 0 | 626 | 683 | 16412253 | 16412196 | 1.820000e-09 | 75.0 |
30 | TraesCS7A01G339300 | chr5B | 89.655 | 58 | 6 | 0 | 626 | 683 | 527754951 | 527755008 | 1.820000e-09 | 75.0 |
31 | TraesCS7A01G339300 | chr1B | 89.655 | 58 | 6 | 0 | 626 | 683 | 231334277 | 231334334 | 1.820000e-09 | 75.0 |
32 | TraesCS7A01G339300 | chr4D | 83.333 | 78 | 11 | 2 | 418 | 494 | 57016659 | 57016583 | 2.350000e-08 | 71.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G339300 | chr7A | 496961980 | 496966686 | 4706 | True | 8693.000000 | 8693 | 100.000000 | 1 | 4707 | 1 | chr7A.!!$R1 | 4706 |
1 | TraesCS7A01G339300 | chr7B | 462806523 | 462812442 | 5919 | True | 1913.666667 | 2305 | 87.997333 | 180 | 4707 | 3 | chr7B.!!$R3 | 4527 |
2 | TraesCS7A01G339300 | chr7D | 446305902 | 446311944 | 6042 | True | 1157.600000 | 2257 | 89.062600 | 180 | 4707 | 5 | chr7D.!!$R1 | 4527 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
127 | 128 | 0.387565 | AAACCCGGTCAAACATGCAC | 59.612 | 50.0 | 0.00 | 0.00 | 0.00 | 4.57 | F |
1602 | 1610 | 0.390735 | AAATAGCGGACGGGTGACAC | 60.391 | 55.0 | 0.00 | 0.00 | 0.00 | 3.67 | F |
1705 | 2465 | 0.378962 | TTTCTGTTGAAACCGCACGG | 59.621 | 50.0 | 7.71 | 7.71 | 37.27 | 4.94 | F |
3037 | 3854 | 1.386533 | CGGGGTGTCGTCTAGTGTAT | 58.613 | 55.0 | 0.00 | 0.00 | 0.00 | 2.29 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1700 | 2460 | 0.241481 | TATTTTGAAACGGGCCGTGC | 59.759 | 50.0 | 34.87 | 26.85 | 39.99 | 5.34 | R |
2732 | 3546 | 0.376152 | CATTGTGGTGCGAGAGATGC | 59.624 | 55.0 | 0.00 | 0.00 | 0.00 | 3.91 | R |
3702 | 6025 | 0.910088 | GGCAGGACCCTTCACCTACT | 60.910 | 60.0 | 0.00 | 0.00 | 34.87 | 2.57 | R |
4025 | 6351 | 0.034574 | TGGTTGCTTGGTCAGTGTGT | 60.035 | 50.0 | 0.00 | 0.00 | 0.00 | 3.72 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
63 | 64 | 6.817765 | GAAACTACTTTTCATGATGGACCA | 57.182 | 37.500 | 0.00 | 0.00 | 42.95 | 4.02 |
64 | 65 | 7.214467 | GAAACTACTTTTCATGATGGACCAA | 57.786 | 36.000 | 0.00 | 0.00 | 42.95 | 3.67 |
65 | 66 | 7.595819 | AAACTACTTTTCATGATGGACCAAA | 57.404 | 32.000 | 0.00 | 0.00 | 0.00 | 3.28 |
66 | 67 | 7.781324 | AACTACTTTTCATGATGGACCAAAT | 57.219 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
67 | 68 | 8.877864 | AACTACTTTTCATGATGGACCAAATA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
68 | 69 | 8.877864 | ACTACTTTTCATGATGGACCAAATAA | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
69 | 70 | 9.479549 | ACTACTTTTCATGATGGACCAAATAAT | 57.520 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
116 | 117 | 7.948034 | TGATATATTTTTCTGAAAACCCGGT | 57.052 | 32.000 | 14.70 | 2.65 | 37.56 | 5.28 |
117 | 118 | 7.992008 | TGATATATTTTTCTGAAAACCCGGTC | 58.008 | 34.615 | 14.70 | 10.96 | 37.56 | 4.79 |
118 | 119 | 7.612244 | TGATATATTTTTCTGAAAACCCGGTCA | 59.388 | 33.333 | 14.70 | 12.98 | 37.56 | 4.02 |
119 | 120 | 6.658188 | ATATTTTTCTGAAAACCCGGTCAA | 57.342 | 33.333 | 14.70 | 0.00 | 37.56 | 3.18 |
120 | 121 | 4.803098 | TTTTTCTGAAAACCCGGTCAAA | 57.197 | 36.364 | 14.70 | 0.00 | 30.07 | 2.69 |
121 | 122 | 3.786516 | TTTCTGAAAACCCGGTCAAAC | 57.213 | 42.857 | 0.00 | 0.00 | 0.00 | 2.93 |
122 | 123 | 2.421751 | TCTGAAAACCCGGTCAAACA | 57.578 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
123 | 124 | 2.938838 | TCTGAAAACCCGGTCAAACAT | 58.061 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
124 | 125 | 2.621055 | TCTGAAAACCCGGTCAAACATG | 59.379 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
125 | 126 | 1.067821 | TGAAAACCCGGTCAAACATGC | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 4.06 |
126 | 127 | 1.067821 | GAAAACCCGGTCAAACATGCA | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
127 | 128 | 0.387565 | AAACCCGGTCAAACATGCAC | 59.612 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
128 | 129 | 0.467290 | AACCCGGTCAAACATGCACT | 60.467 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
129 | 130 | 0.889186 | ACCCGGTCAAACATGCACTC | 60.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
130 | 131 | 1.497278 | CCGGTCAAACATGCACTCG | 59.503 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
131 | 132 | 1.227999 | CCGGTCAAACATGCACTCGT | 61.228 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
132 | 133 | 0.586319 | CGGTCAAACATGCACTCGTT | 59.414 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
133 | 134 | 1.002900 | CGGTCAAACATGCACTCGTTT | 60.003 | 47.619 | 5.20 | 5.20 | 35.76 | 3.60 |
139 | 140 | 4.370364 | AAACATGCACTCGTTTGACTTT | 57.630 | 36.364 | 9.29 | 0.00 | 34.16 | 2.66 |
140 | 141 | 4.370364 | AACATGCACTCGTTTGACTTTT | 57.630 | 36.364 | 0.00 | 0.00 | 0.00 | 2.27 |
141 | 142 | 3.694734 | ACATGCACTCGTTTGACTTTTG | 58.305 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
142 | 143 | 3.376859 | ACATGCACTCGTTTGACTTTTGA | 59.623 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
143 | 144 | 3.398954 | TGCACTCGTTTGACTTTTGAC | 57.601 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
144 | 145 | 2.744741 | TGCACTCGTTTGACTTTTGACA | 59.255 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
145 | 146 | 3.189495 | TGCACTCGTTTGACTTTTGACAA | 59.811 | 39.130 | 0.00 | 0.00 | 32.75 | 3.18 |
146 | 147 | 4.162812 | GCACTCGTTTGACTTTTGACAAA | 58.837 | 39.130 | 0.00 | 0.00 | 40.55 | 2.83 |
147 | 148 | 4.619336 | GCACTCGTTTGACTTTTGACAAAA | 59.381 | 37.500 | 12.62 | 12.62 | 43.25 | 2.44 |
148 | 149 | 5.442779 | GCACTCGTTTGACTTTTGACAAAAC | 60.443 | 40.000 | 9.30 | 2.17 | 43.25 | 2.43 |
149 | 150 | 5.627367 | CACTCGTTTGACTTTTGACAAAACA | 59.373 | 36.000 | 9.30 | 4.74 | 43.25 | 2.83 |
150 | 151 | 6.143118 | CACTCGTTTGACTTTTGACAAAACAA | 59.857 | 34.615 | 9.30 | 10.23 | 43.25 | 2.83 |
151 | 152 | 6.697892 | ACTCGTTTGACTTTTGACAAAACAAA | 59.302 | 30.769 | 18.35 | 18.35 | 43.25 | 2.83 |
152 | 153 | 7.383843 | ACTCGTTTGACTTTTGACAAAACAAAT | 59.616 | 29.630 | 22.19 | 11.00 | 43.25 | 2.32 |
153 | 154 | 8.744008 | TCGTTTGACTTTTGACAAAACAAATA | 57.256 | 26.923 | 22.19 | 15.21 | 43.25 | 1.40 |
154 | 155 | 8.640291 | TCGTTTGACTTTTGACAAAACAAATAC | 58.360 | 29.630 | 22.19 | 14.92 | 43.25 | 1.89 |
155 | 156 | 8.428536 | CGTTTGACTTTTGACAAAACAAATACA | 58.571 | 29.630 | 22.19 | 10.36 | 43.25 | 2.29 |
156 | 157 | 9.523730 | GTTTGACTTTTGACAAAACAAATACAC | 57.476 | 29.630 | 22.19 | 12.74 | 43.25 | 2.90 |
157 | 158 | 7.820044 | TGACTTTTGACAAAACAAATACACC | 57.180 | 32.000 | 9.30 | 0.00 | 39.09 | 4.16 |
158 | 159 | 7.607250 | TGACTTTTGACAAAACAAATACACCT | 58.393 | 30.769 | 9.30 | 0.00 | 39.09 | 4.00 |
159 | 160 | 8.091449 | TGACTTTTGACAAAACAAATACACCTT | 58.909 | 29.630 | 9.30 | 0.00 | 39.09 | 3.50 |
160 | 161 | 9.575783 | GACTTTTGACAAAACAAATACACCTTA | 57.424 | 29.630 | 9.30 | 0.00 | 39.09 | 2.69 |
177 | 178 | 7.138054 | ACACCTTATATAAAGGAACAGAGGG | 57.862 | 40.000 | 10.67 | 4.11 | 39.81 | 4.30 |
178 | 179 | 6.906901 | ACACCTTATATAAAGGAACAGAGGGA | 59.093 | 38.462 | 10.67 | 0.00 | 39.81 | 4.20 |
191 | 192 | 7.523415 | AGGAACAGAGGGAGTATTTGTTTAAA | 58.477 | 34.615 | 0.00 | 0.00 | 32.58 | 1.52 |
227 | 228 | 7.516198 | AGATGATATTTACTTGAATGCCCAC | 57.484 | 36.000 | 0.00 | 0.00 | 0.00 | 4.61 |
228 | 229 | 7.062322 | AGATGATATTTACTTGAATGCCCACA | 58.938 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
277 | 278 | 4.612264 | AAATGCAACTTGCTCATTTCCT | 57.388 | 36.364 | 14.78 | 0.00 | 45.31 | 3.36 |
299 | 300 | 1.600023 | TTAAACCGAGGCACCTTGTG | 58.400 | 50.000 | 3.23 | 0.00 | 36.51 | 3.33 |
315 | 316 | 3.504906 | CCTTGTGCAATGATGTGAACTCT | 59.495 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
324 | 325 | 4.025040 | TGATGTGAACTCTCTTGCCATT | 57.975 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
461 | 462 | 8.964420 | AAAAATGATACAATGACACTAAACGG | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 4.44 |
462 | 463 | 6.677781 | AATGATACAATGACACTAAACGGG | 57.322 | 37.500 | 0.00 | 0.00 | 0.00 | 5.28 |
520 | 521 | 9.638239 | ATCAATGTGTTCAATATAACCACAAAC | 57.362 | 29.630 | 0.00 | 0.00 | 30.13 | 2.93 |
528 | 529 | 9.705290 | GTTCAATATAACCACAAACTTCCATTT | 57.295 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
537 | 538 | 7.162082 | ACCACAAACTTCCATTTTACAACAAA | 58.838 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
538 | 539 | 7.661847 | ACCACAAACTTCCATTTTACAACAAAA | 59.338 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
539 | 540 | 8.672815 | CCACAAACTTCCATTTTACAACAAAAT | 58.327 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
599 | 601 | 8.597167 | CCAAAGATTACCTCACCATCTATGATA | 58.403 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
603 | 605 | 9.253832 | AGATTACCTCACCATCTATGATAAGAG | 57.746 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
608 | 610 | 7.515514 | ACCTCACCATCTATGATAAGAGGAAAT | 59.484 | 37.037 | 19.48 | 4.72 | 43.07 | 2.17 |
623 | 625 | 3.817647 | GAGGAAATCATGCCTGGTCATAC | 59.182 | 47.826 | 0.00 | 0.00 | 33.84 | 2.39 |
644 | 646 | 1.831736 | GCTCTAACTGGGTAGAAGCCA | 59.168 | 52.381 | 0.00 | 0.00 | 44.64 | 4.75 |
649 | 651 | 5.464069 | TCTAACTGGGTAGAAGCCATCATA | 58.536 | 41.667 | 0.00 | 0.00 | 45.81 | 2.15 |
663 | 665 | 5.574188 | AGCCATCATAAAAAGGTCTCTGTT | 58.426 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
683 | 685 | 5.446860 | TGTTCTCCGTCCTCTACAAGATAT | 58.553 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
714 | 717 | 9.553064 | AAAGAGTCATAATGTACAGGAATGATC | 57.447 | 33.333 | 16.22 | 14.25 | 0.00 | 2.92 |
773 | 778 | 6.759497 | AAAAACACATCATCCCTAGTAAGC | 57.241 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
786 | 791 | 3.118038 | CCTAGTAAGCCATAGTGCCCAAA | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.28 |
849 | 854 | 6.691255 | TTTGTCAATACCCTACTACCAGTT | 57.309 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
862 | 867 | 6.475727 | CCTACTACCAGTTGTCGAACATATTG | 59.524 | 42.308 | 0.00 | 0.00 | 34.17 | 1.90 |
864 | 869 | 2.415168 | ACCAGTTGTCGAACATATTGCG | 59.585 | 45.455 | 0.00 | 0.00 | 34.17 | 4.85 |
909 | 914 | 5.183904 | GGTTTGAAGCCACTTGAACTATGAT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
978 | 984 | 3.129462 | TCGTCATGTTGGCAAGAAACAAA | 59.871 | 39.130 | 0.00 | 0.00 | 40.69 | 2.83 |
1005 | 1011 | 4.510571 | ACTACCTTACCAAAACTATGGCG | 58.489 | 43.478 | 0.00 | 0.00 | 44.75 | 5.69 |
1006 | 1012 | 3.428413 | ACCTTACCAAAACTATGGCGT | 57.572 | 42.857 | 0.00 | 0.00 | 44.75 | 5.68 |
1020 | 1026 | 1.890876 | TGGCGTGTCAAACTATGCTT | 58.109 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1039 | 1045 | 3.437049 | GCTTGTTAAGATCACACCTCCAC | 59.563 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1049 | 1055 | 6.542821 | AGATCACACCTCCACTAAAAATCAA | 58.457 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1273 | 1280 | 9.449719 | AAGAATAGTCATGGTTACTGGTTAAAG | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
1274 | 1281 | 8.047310 | AGAATAGTCATGGTTACTGGTTAAAGG | 58.953 | 37.037 | 0.00 | 0.00 | 0.00 | 3.11 |
1280 | 1287 | 8.674607 | GTCATGGTTACTGGTTAAAGGATTAAG | 58.325 | 37.037 | 0.00 | 0.00 | 31.81 | 1.85 |
1281 | 1288 | 7.338449 | TCATGGTTACTGGTTAAAGGATTAAGC | 59.662 | 37.037 | 0.00 | 4.12 | 45.42 | 3.09 |
1324 | 1331 | 9.996554 | TCATTGGTTCTATAGTATATGGTTGTG | 57.003 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
1325 | 1332 | 9.778741 | CATTGGTTCTATAGTATATGGTTGTGT | 57.221 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
1327 | 1334 | 9.826574 | TTGGTTCTATAGTATATGGTTGTGTTC | 57.173 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1328 | 1335 | 8.983789 | TGGTTCTATAGTATATGGTTGTGTTCA | 58.016 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1329 | 1336 | 9.257651 | GGTTCTATAGTATATGGTTGTGTTCAC | 57.742 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
1332 | 1339 | 8.857098 | TCTATAGTATATGGTTGTGTTCACTCC | 58.143 | 37.037 | 0.00 | 7.42 | 0.00 | 3.85 |
1333 | 1340 | 5.755409 | AGTATATGGTTGTGTTCACTCCA | 57.245 | 39.130 | 16.76 | 16.76 | 34.30 | 3.86 |
1334 | 1341 | 6.313519 | AGTATATGGTTGTGTTCACTCCAT | 57.686 | 37.500 | 23.48 | 23.48 | 39.72 | 3.41 |
1335 | 1342 | 7.432148 | AGTATATGGTTGTGTTCACTCCATA | 57.568 | 36.000 | 25.04 | 25.04 | 40.89 | 2.74 |
1336 | 1343 | 8.034313 | AGTATATGGTTGTGTTCACTCCATAT | 57.966 | 34.615 | 29.63 | 29.63 | 44.16 | 1.78 |
1337 | 1344 | 9.154632 | AGTATATGGTTGTGTTCACTCCATATA | 57.845 | 33.333 | 28.53 | 28.53 | 42.50 | 0.86 |
1338 | 1345 | 9.944376 | GTATATGGTTGTGTTCACTCCATATAT | 57.056 | 33.333 | 30.93 | 22.98 | 44.08 | 0.86 |
1339 | 1346 | 8.853077 | ATATGGTTGTGTTCACTCCATATATG | 57.147 | 34.615 | 28.07 | 5.68 | 42.50 | 1.78 |
1403 | 1411 | 4.519540 | TTAAGCATGGGAAGCAACTTTC | 57.480 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
1426 | 1434 | 6.973642 | TCTTCCCTCTTTCATACCATTCAAT | 58.026 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1480 | 1488 | 3.567478 | AGAAAGCCACAACAGAGACTT | 57.433 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
1494 | 1502 | 2.027377 | AGAGACTTGCCATGTGAGGAAG | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1509 | 1517 | 4.069304 | TGAGGAAGACATGGGTTTTAACG | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1510 | 1518 | 4.202377 | TGAGGAAGACATGGGTTTTAACGA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1556 | 1564 | 1.847999 | CTGCGAAAAGTGCAAACAGTG | 59.152 | 47.619 | 0.00 | 0.00 | 42.70 | 3.66 |
1565 | 1573 | 1.525077 | GCAAACAGTGGACGGGTGA | 60.525 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
1579 | 1587 | 1.553248 | CGGGTGACATTGGAGGACTTA | 59.447 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
1602 | 1610 | 0.390735 | AAATAGCGGACGGGTGACAC | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1603 | 1611 | 1.255667 | AATAGCGGACGGGTGACACT | 61.256 | 55.000 | 5.39 | 0.00 | 0.00 | 3.55 |
1604 | 1612 | 1.945354 | ATAGCGGACGGGTGACACTG | 61.945 | 60.000 | 5.39 | 1.22 | 0.00 | 3.66 |
1605 | 1613 | 4.295119 | GCGGACGGGTGACACTGT | 62.295 | 66.667 | 5.39 | 4.65 | 0.00 | 3.55 |
1606 | 1614 | 2.355837 | CGGACGGGTGACACTGTG | 60.356 | 66.667 | 6.19 | 6.19 | 0.00 | 3.66 |
1607 | 1615 | 2.030562 | GGACGGGTGACACTGTGG | 59.969 | 66.667 | 13.09 | 0.00 | 0.00 | 4.17 |
1626 | 2359 | 8.246180 | CACTGTGGCATTAAAAGTTCTAATGAT | 58.754 | 33.333 | 12.23 | 0.00 | 38.50 | 2.45 |
1705 | 2465 | 0.378962 | TTTCTGTTGAAACCGCACGG | 59.621 | 50.000 | 7.71 | 7.71 | 37.27 | 4.94 |
1756 | 2516 | 6.633234 | GCTTCCAAATTATTCTTAGCGCTTAC | 59.367 | 38.462 | 18.68 | 0.00 | 0.00 | 2.34 |
1781 | 2541 | 7.117812 | ACGATGTCGACTGAAATTAGTTTTCAT | 59.882 | 33.333 | 17.92 | 0.00 | 45.90 | 2.57 |
1863 | 2674 | 7.891183 | ATCTATACACAAAGATTGCGGTATC | 57.109 | 36.000 | 9.75 | 0.00 | 36.48 | 2.24 |
1865 | 2676 | 7.269316 | TCTATACACAAAGATTGCGGTATCAA | 58.731 | 34.615 | 9.75 | 0.00 | 36.48 | 2.57 |
1871 | 2682 | 7.066887 | ACACAAAGATTGCGGTATCAAATCATA | 59.933 | 33.333 | 2.25 | 0.00 | 0.00 | 2.15 |
1873 | 2684 | 8.077991 | ACAAAGATTGCGGTATCAAATCATATG | 58.922 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
1952 | 2763 | 5.011329 | TCAAAGAGTTCTTACCACCGTACAT | 59.989 | 40.000 | 0.00 | 0.00 | 34.61 | 2.29 |
2022 | 2833 | 2.905085 | CTCTGGAGGCAGTGGATATGAT | 59.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2043 | 2854 | 1.484356 | CCTTAACTTCGATACCCGCG | 58.516 | 55.000 | 0.00 | 0.00 | 38.37 | 6.46 |
2178 | 2990 | 4.785511 | TCAGACTGCTACTTCAAGTACC | 57.214 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
2232 | 3044 | 7.668492 | AGGATAAGCTAATAACTTTAGTCGGG | 58.332 | 38.462 | 0.00 | 0.00 | 0.00 | 5.14 |
2352 | 3164 | 5.243981 | CGCCATCAATATGATCTTCCTTCT | 58.756 | 41.667 | 0.00 | 0.00 | 34.28 | 2.85 |
2355 | 3167 | 7.551974 | CGCCATCAATATGATCTTCCTTCTTAT | 59.448 | 37.037 | 0.00 | 0.00 | 34.28 | 1.73 |
2382 | 3194 | 6.313905 | TGAAATTTCTTATCTCTTCCGCAGTC | 59.686 | 38.462 | 18.64 | 0.00 | 0.00 | 3.51 |
2405 | 3217 | 9.901172 | AGTCAATTTTACTATGGTAAGGGTTAG | 57.099 | 33.333 | 1.70 | 0.00 | 38.86 | 2.34 |
2407 | 3219 | 9.895138 | TCAATTTTACTATGGTAAGGGTTAGTC | 57.105 | 33.333 | 1.70 | 0.00 | 38.86 | 2.59 |
2418 | 3230 | 9.936329 | ATGGTAAGGGTTAGTCAATTTTATGAT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
2419 | 3231 | 9.184523 | TGGTAAGGGTTAGTCAATTTTATGATG | 57.815 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
2420 | 3232 | 8.630037 | GGTAAGGGTTAGTCAATTTTATGATGG | 58.370 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2421 | 3233 | 9.185680 | GTAAGGGTTAGTCAATTTTATGATGGT | 57.814 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2423 | 3235 | 9.762381 | AAGGGTTAGTCAATTTTATGATGGTAA | 57.238 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
2424 | 3236 | 9.408648 | AGGGTTAGTCAATTTTATGATGGTAAG | 57.591 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
2425 | 3237 | 8.630037 | GGGTTAGTCAATTTTATGATGGTAAGG | 58.370 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
2426 | 3238 | 8.630037 | GGTTAGTCAATTTTATGATGGTAAGGG | 58.370 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2427 | 3239 | 9.185680 | GTTAGTCAATTTTATGATGGTAAGGGT | 57.814 | 33.333 | 0.00 | 0.00 | 0.00 | 4.34 |
2428 | 3240 | 9.762381 | TTAGTCAATTTTATGATGGTAAGGGTT | 57.238 | 29.630 | 0.00 | 0.00 | 0.00 | 4.11 |
2430 | 3242 | 9.936329 | AGTCAATTTTATGATGGTAAGGGTTAT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
2467 | 3279 | 8.784043 | GGTTATAGTTGTTTCACAGAAACTCAT | 58.216 | 33.333 | 19.61 | 11.48 | 34.76 | 2.90 |
2489 | 3303 | 8.316497 | TCATTTGACTCTCTCTCTCCATAAAT | 57.684 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2490 | 3304 | 8.766476 | TCATTTGACTCTCTCTCTCCATAAATT | 58.234 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2499 | 3313 | 9.911788 | TCTCTCTCTCCATAAATTATTTTTGCT | 57.088 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2518 | 3332 | 8.840833 | TTTTGCTCTTGAAGGTTTTAAAGTTT | 57.159 | 26.923 | 0.00 | 0.00 | 0.00 | 2.66 |
2532 | 3346 | 9.051679 | GGTTTTAAAGTTTTGCATATTTCCACT | 57.948 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
2556 | 3370 | 8.697292 | ACTAGACTCCTATGAACCATTACTTTC | 58.303 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
2568 | 3382 | 9.161629 | TGAACCATTACTTTCATAGTACATGTG | 57.838 | 33.333 | 9.11 | 0.00 | 39.05 | 3.21 |
2589 | 3403 | 2.971901 | AGTTTCCCTTCGGTTCCATT | 57.028 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2669 | 3483 | 3.243301 | GCTATGGCACCTCATCACAATTG | 60.243 | 47.826 | 3.24 | 3.24 | 38.54 | 2.32 |
2676 | 3490 | 3.695556 | CACCTCATCACAATTGCCACATA | 59.304 | 43.478 | 5.05 | 0.00 | 0.00 | 2.29 |
2696 | 3510 | 9.841295 | CCACATAACCCTTATTAGCTTTAGTAA | 57.159 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2732 | 3546 | 1.683917 | CCTCCTCCAGTCCATACTTCG | 59.316 | 57.143 | 0.00 | 0.00 | 31.97 | 3.79 |
2739 | 3553 | 2.363680 | CCAGTCCATACTTCGCATCTCT | 59.636 | 50.000 | 0.00 | 0.00 | 31.97 | 3.10 |
2851 | 3667 | 4.202182 | TGTCGTAGTTGTTTGCTCTACCTT | 60.202 | 41.667 | 0.00 | 0.00 | 32.91 | 3.50 |
2956 | 3773 | 5.657474 | GTTGAAGGATTGAATGCATGTCAT | 58.343 | 37.500 | 0.00 | 0.00 | 36.87 | 3.06 |
2960 | 3777 | 6.377712 | TGAAGGATTGAATGCATGTCATACAA | 59.622 | 34.615 | 0.00 | 1.37 | 34.33 | 2.41 |
2963 | 3780 | 6.548251 | AGGATTGAATGCATGTCATACAATCA | 59.452 | 34.615 | 23.87 | 12.26 | 41.78 | 2.57 |
2984 | 3801 | 9.499585 | CAATCATTTACTTCATGTTGCTTAGAG | 57.500 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3018 | 3835 | 7.912056 | TCTAGAAATATCCTATGCAACATGC | 57.088 | 36.000 | 0.00 | 0.00 | 45.29 | 4.06 |
3027 | 3844 | 4.101790 | GCAACATGCGGGGTGTCG | 62.102 | 66.667 | 0.00 | 0.00 | 31.71 | 4.35 |
3034 | 3851 | 1.945354 | ATGCGGGGTGTCGTCTAGTG | 61.945 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3037 | 3854 | 1.386533 | CGGGGTGTCGTCTAGTGTAT | 58.613 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3044 | 3861 | 7.119699 | CGGGGTGTCGTCTAGTGTATATAATTA | 59.880 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
3168 | 5490 | 8.877864 | AAGGGTTCATAAATGATTACACTTGA | 57.122 | 30.769 | 10.19 | 0.00 | 38.90 | 3.02 |
3219 | 5541 | 8.791327 | ATTTTCCATTGATTTACATTCAACCC | 57.209 | 30.769 | 0.00 | 0.00 | 36.02 | 4.11 |
3226 | 5548 | 1.798283 | TTACATTCAACCCGGTCACG | 58.202 | 50.000 | 0.00 | 0.00 | 40.55 | 4.35 |
3232 | 5554 | 2.875087 | TCAACCCGGTCACGTATATG | 57.125 | 50.000 | 0.00 | 0.00 | 38.78 | 1.78 |
3269 | 5591 | 9.513906 | TCAGTCTGACATTCTCTTCTATATAGG | 57.486 | 37.037 | 10.88 | 0.00 | 0.00 | 2.57 |
3301 | 5623 | 2.380064 | TTGGTGCAAAGAGGATTGGT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3310 | 5632 | 4.072131 | CAAAGAGGATTGGTTTCTTCGGA | 58.928 | 43.478 | 0.00 | 0.00 | 31.16 | 4.55 |
3537 | 5859 | 9.378551 | TGATTTTTATGGTGAGTGTACACTATC | 57.621 | 33.333 | 27.98 | 20.82 | 42.66 | 2.08 |
3541 | 5863 | 1.761198 | GGTGAGTGTACACTATCCCCC | 59.239 | 57.143 | 27.98 | 17.96 | 42.66 | 5.40 |
3542 | 5864 | 1.407979 | GTGAGTGTACACTATCCCCCG | 59.592 | 57.143 | 27.98 | 0.00 | 42.66 | 5.73 |
3657 | 5980 | 3.904339 | ACTACAACAACACTGGATCCTCT | 59.096 | 43.478 | 14.23 | 0.00 | 0.00 | 3.69 |
3671 | 5994 | 4.474651 | TGGATCCTCTACATTCACATTGGT | 59.525 | 41.667 | 14.23 | 0.00 | 0.00 | 3.67 |
3692 | 6015 | 4.041723 | GTCGGGAAAACAACTTTCACATG | 58.958 | 43.478 | 0.00 | 0.00 | 46.30 | 3.21 |
3696 | 6019 | 4.340950 | GGGAAAACAACTTTCACATGGAGA | 59.659 | 41.667 | 0.00 | 0.00 | 45.43 | 3.71 |
3716 | 6039 | 3.579151 | AGAAAGTCAGTAGGTGAAGGGTC | 59.421 | 47.826 | 0.00 | 0.00 | 36.74 | 4.46 |
3738 | 6061 | 2.343758 | CGACCGGCCCATCCTATG | 59.656 | 66.667 | 0.00 | 0.00 | 0.00 | 2.23 |
3741 | 6064 | 2.348998 | CCGGCCCATCCTATGAGC | 59.651 | 66.667 | 0.00 | 0.00 | 32.69 | 4.26 |
3742 | 6065 | 2.519622 | CCGGCCCATCCTATGAGCA | 61.520 | 63.158 | 0.00 | 0.00 | 35.49 | 4.26 |
3748 | 6071 | 2.620585 | GCCCATCCTATGAGCAAAAGTC | 59.379 | 50.000 | 0.00 | 0.00 | 33.79 | 3.01 |
3749 | 6072 | 3.217626 | CCCATCCTATGAGCAAAAGTCC | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3751 | 6074 | 3.629398 | CCATCCTATGAGCAAAAGTCCAC | 59.371 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
3752 | 6075 | 3.350219 | TCCTATGAGCAAAAGTCCACC | 57.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
3775 | 6098 | 2.195741 | GAAAGGCCTTTCCTAACCGT | 57.804 | 50.000 | 38.01 | 13.35 | 46.94 | 4.83 |
3782 | 6105 | 2.095372 | GCCTTTCCTAACCGTCATTTCG | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3788 | 6111 | 5.895636 | TCCTAACCGTCATTTCGTTACTA | 57.104 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3798 | 6121 | 4.330620 | TCATTTCGTTACTAACCGGCAATC | 59.669 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
3814 | 6137 | 4.165779 | GGCAATCTTTCATTGGTGTAACG | 58.834 | 43.478 | 0.00 | 0.00 | 38.12 | 3.18 |
3822 | 6145 | 2.106857 | TCATTGGTGTAACGGGTTTCCT | 59.893 | 45.455 | 0.00 | 0.00 | 38.12 | 3.36 |
3848 | 6171 | 5.010617 | ACCAATATATTTTTGGCGATGGACC | 59.989 | 40.000 | 14.10 | 0.00 | 46.21 | 4.46 |
3858 | 6181 | 2.238646 | TGGCGATGGACCTTAGTTTCAT | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3867 | 6191 | 6.303054 | TGGACCTTAGTTTCATCATTTGTCA | 58.697 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3869 | 6193 | 7.084486 | GGACCTTAGTTTCATCATTTGTCAAC | 58.916 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
3874 | 6198 | 4.821805 | AGTTTCATCATTTGTCAACCGACT | 59.178 | 37.500 | 0.00 | 0.00 | 43.06 | 4.18 |
3875 | 6199 | 4.747540 | TTCATCATTTGTCAACCGACTG | 57.252 | 40.909 | 0.00 | 0.00 | 43.06 | 3.51 |
3888 | 6212 | 1.201647 | ACCGACTGTCCGACAACATAG | 59.798 | 52.381 | 2.19 | 0.00 | 0.00 | 2.23 |
3895 | 6219 | 0.981183 | TCCGACAACATAGCCTTGGT | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3896 | 6220 | 1.349688 | TCCGACAACATAGCCTTGGTT | 59.650 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
3897 | 6221 | 2.159382 | CCGACAACATAGCCTTGGTTT | 58.841 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
3933 | 6257 | 5.560722 | TGGTCTAGTTGTGAGATTTTCCA | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
3934 | 6258 | 5.935945 | TGGTCTAGTTGTGAGATTTTCCAA | 58.064 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
3937 | 6261 | 5.003804 | TCTAGTTGTGAGATTTTCCAAGGC | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3942 | 6266 | 3.007506 | TGTGAGATTTTCCAAGGCGACTA | 59.992 | 43.478 | 0.00 | 0.00 | 42.68 | 2.59 |
3975 | 6299 | 1.866601 | GTCTTTGCCAACCAACATTGC | 59.133 | 47.619 | 0.00 | 0.00 | 31.97 | 3.56 |
3981 | 6307 | 1.006337 | CAACCAACATTGCCCCACG | 60.006 | 57.895 | 0.00 | 0.00 | 0.00 | 4.94 |
4047 | 6373 | 0.599558 | CACTGACCAAGCAACCATGG | 59.400 | 55.000 | 11.19 | 11.19 | 42.60 | 3.66 |
4054 | 6380 | 4.141528 | TGACCAAGCAACCATGGAATTTTT | 60.142 | 37.500 | 21.47 | 0.00 | 39.12 | 1.94 |
4055 | 6381 | 5.070981 | TGACCAAGCAACCATGGAATTTTTA | 59.929 | 36.000 | 21.47 | 0.00 | 39.12 | 1.52 |
4056 | 6382 | 6.125589 | ACCAAGCAACCATGGAATTTTTAT | 57.874 | 33.333 | 21.47 | 0.00 | 39.12 | 1.40 |
4057 | 6383 | 7.038729 | TGACCAAGCAACCATGGAATTTTTATA | 60.039 | 33.333 | 21.47 | 0.00 | 39.12 | 0.98 |
4059 | 6385 | 6.538381 | CCAAGCAACCATGGAATTTTTATACC | 59.462 | 38.462 | 21.47 | 0.00 | 39.12 | 2.73 |
4060 | 6386 | 6.865834 | AGCAACCATGGAATTTTTATACCA | 57.134 | 33.333 | 21.47 | 0.00 | 36.83 | 3.25 |
4068 | 6395 | 9.369904 | CCATGGAATTTTTATACCAAAAGAGTG | 57.630 | 33.333 | 5.56 | 0.00 | 36.00 | 3.51 |
4120 | 6447 | 4.158764 | TCCAAAATATTAAGCCACAACCGG | 59.841 | 41.667 | 0.00 | 0.00 | 0.00 | 5.28 |
4178 | 6518 | 6.003326 | TGTTCATCTGTTCACCACATACATT | 58.997 | 36.000 | 0.00 | 0.00 | 33.76 | 2.71 |
4219 | 6559 | 3.640498 | TCAAAAGGTGCATGTCCAATGAA | 59.360 | 39.130 | 10.70 | 0.00 | 0.00 | 2.57 |
4288 | 6628 | 1.395826 | GGGTAGCTCCTCATGCTCGT | 61.396 | 60.000 | 0.00 | 0.00 | 41.46 | 4.18 |
4292 | 6632 | 1.028905 | AGCTCCTCATGCTCGTAGAC | 58.971 | 55.000 | 0.00 | 0.00 | 35.67 | 2.59 |
4303 | 6643 | 5.300792 | TCATGCTCGTAGACCATAATACACA | 59.699 | 40.000 | 0.00 | 0.00 | 30.01 | 3.72 |
4304 | 6644 | 4.928601 | TGCTCGTAGACCATAATACACAC | 58.071 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
4323 | 6663 | 3.253188 | ACACCACATTCAATCTTGTTCCG | 59.747 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4328 | 6668 | 4.917415 | CACATTCAATCTTGTTCCGGTTTC | 59.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
4334 | 6674 | 2.582052 | TCTTGTTCCGGTTTCTGCATT | 58.418 | 42.857 | 0.00 | 0.00 | 0.00 | 3.56 |
4349 | 6689 | 8.125448 | GGTTTCTGCATTATGAAGACACTATTC | 58.875 | 37.037 | 16.40 | 0.17 | 34.05 | 1.75 |
4431 | 6771 | 3.118482 | AGCACATATGTTGCACTAGAGCT | 60.118 | 43.478 | 23.27 | 15.65 | 34.99 | 4.09 |
4439 | 6779 | 2.857152 | GTTGCACTAGAGCTCTCAATCG | 59.143 | 50.000 | 22.17 | 6.84 | 34.99 | 3.34 |
4451 | 6791 | 4.023279 | AGCTCTCAATCGCATCTAGTACAG | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
4469 | 6809 | 1.066858 | CAGCGCTACAAAAGAGGGAGA | 60.067 | 52.381 | 10.99 | 0.00 | 0.00 | 3.71 |
4474 | 6814 | 3.369471 | CGCTACAAAAGAGGGAGAATGGA | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
4475 | 6815 | 4.589908 | GCTACAAAAGAGGGAGAATGGAA | 58.410 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
4476 | 6816 | 4.637977 | GCTACAAAAGAGGGAGAATGGAAG | 59.362 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
4477 | 6817 | 5.571658 | GCTACAAAAGAGGGAGAATGGAAGA | 60.572 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
4478 | 6818 | 5.527026 | ACAAAAGAGGGAGAATGGAAGAT | 57.473 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
4479 | 6819 | 5.259632 | ACAAAAGAGGGAGAATGGAAGATG | 58.740 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
4480 | 6820 | 5.014544 | ACAAAAGAGGGAGAATGGAAGATGA | 59.985 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
4481 | 6821 | 5.786121 | AAAGAGGGAGAATGGAAGATGAA | 57.214 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
4482 | 6822 | 4.769345 | AGAGGGAGAATGGAAGATGAAC | 57.231 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4483 | 6823 | 4.107072 | AGAGGGAGAATGGAAGATGAACA | 58.893 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
4484 | 6824 | 4.537688 | AGAGGGAGAATGGAAGATGAACAA | 59.462 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
4485 | 6825 | 5.014544 | AGAGGGAGAATGGAAGATGAACAAA | 59.985 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4486 | 6826 | 5.835582 | AGGGAGAATGGAAGATGAACAAAT | 58.164 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4487 | 6827 | 6.973642 | AGGGAGAATGGAAGATGAACAAATA | 58.026 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4488 | 6828 | 6.830838 | AGGGAGAATGGAAGATGAACAAATAC | 59.169 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
4489 | 6829 | 6.830838 | GGGAGAATGGAAGATGAACAAATACT | 59.169 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
4490 | 6830 | 7.012799 | GGGAGAATGGAAGATGAACAAATACTC | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
4491 | 6831 | 7.554118 | GGAGAATGGAAGATGAACAAATACTCA | 59.446 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
4492 | 6832 | 9.118300 | GAGAATGGAAGATGAACAAATACTCAT | 57.882 | 33.333 | 0.00 | 0.00 | 34.96 | 2.90 |
4493 | 6833 | 9.471702 | AGAATGGAAGATGAACAAATACTCATT | 57.528 | 29.630 | 0.00 | 0.00 | 32.40 | 2.57 |
4494 | 6834 | 9.512435 | GAATGGAAGATGAACAAATACTCATTG | 57.488 | 33.333 | 0.00 | 0.00 | 32.40 | 2.82 |
4495 | 6835 | 8.585471 | ATGGAAGATGAACAAATACTCATTGT | 57.415 | 30.769 | 0.00 | 0.00 | 42.56 | 2.71 |
4496 | 6836 | 8.044060 | TGGAAGATGAACAAATACTCATTGTC | 57.956 | 34.615 | 0.00 | 0.00 | 39.98 | 3.18 |
4497 | 6837 | 7.665145 | TGGAAGATGAACAAATACTCATTGTCA | 59.335 | 33.333 | 0.00 | 0.00 | 39.98 | 3.58 |
4498 | 6838 | 8.514594 | GGAAGATGAACAAATACTCATTGTCAA | 58.485 | 33.333 | 0.00 | 0.00 | 39.98 | 3.18 |
4499 | 6839 | 9.897744 | GAAGATGAACAAATACTCATTGTCAAA | 57.102 | 29.630 | 0.00 | 0.00 | 39.98 | 2.69 |
4501 | 6841 | 9.903682 | AGATGAACAAATACTCATTGTCAAAAG | 57.096 | 29.630 | 0.00 | 0.00 | 39.98 | 2.27 |
4502 | 6842 | 9.897744 | GATGAACAAATACTCATTGTCAAAAGA | 57.102 | 29.630 | 5.58 | 0.00 | 39.98 | 2.52 |
4554 | 6897 | 8.313292 | AGATCAAGAATGGTCTCTATTGCTATC | 58.687 | 37.037 | 0.00 | 0.00 | 43.75 | 2.08 |
4555 | 6898 | 7.365497 | TCAAGAATGGTCTCTATTGCTATCA | 57.635 | 36.000 | 0.00 | 0.00 | 30.70 | 2.15 |
4581 | 6924 | 4.013728 | ACACAAAGCAAGTCAAACACCTA | 58.986 | 39.130 | 0.00 | 0.00 | 0.00 | 3.08 |
4587 | 6934 | 7.094118 | ACAAAGCAAGTCAAACACCTAGTAAAA | 60.094 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 6.817765 | TGGTCCATCATGAAAAGTAGTTTC | 57.182 | 37.500 | 0.00 | 0.00 | 45.13 | 2.78 |
41 | 42 | 7.595819 | TTTGGTCCATCATGAAAAGTAGTTT | 57.404 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
42 | 43 | 7.781324 | ATTTGGTCCATCATGAAAAGTAGTT | 57.219 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
43 | 44 | 8.877864 | TTATTTGGTCCATCATGAAAAGTAGT | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.73 |
90 | 91 | 8.977412 | ACCGGGTTTTCAGAAAAATATATCAAT | 58.023 | 29.630 | 10.00 | 0.00 | 36.77 | 2.57 |
91 | 92 | 8.356000 | ACCGGGTTTTCAGAAAAATATATCAA | 57.644 | 30.769 | 10.00 | 0.00 | 36.77 | 2.57 |
92 | 93 | 7.612244 | TGACCGGGTTTTCAGAAAAATATATCA | 59.388 | 33.333 | 10.00 | 8.90 | 36.77 | 2.15 |
93 | 94 | 7.992008 | TGACCGGGTTTTCAGAAAAATATATC | 58.008 | 34.615 | 10.00 | 6.68 | 36.77 | 1.63 |
94 | 95 | 7.948034 | TGACCGGGTTTTCAGAAAAATATAT | 57.052 | 32.000 | 10.00 | 0.00 | 36.77 | 0.86 |
95 | 96 | 7.762588 | TTGACCGGGTTTTCAGAAAAATATA | 57.237 | 32.000 | 10.00 | 0.00 | 36.77 | 0.86 |
96 | 97 | 6.658188 | TTGACCGGGTTTTCAGAAAAATAT | 57.342 | 33.333 | 10.00 | 0.00 | 36.77 | 1.28 |
97 | 98 | 6.127423 | TGTTTGACCGGGTTTTCAGAAAAATA | 60.127 | 34.615 | 10.00 | 0.00 | 36.77 | 1.40 |
98 | 99 | 5.113383 | GTTTGACCGGGTTTTCAGAAAAAT | 58.887 | 37.500 | 10.00 | 0.00 | 36.77 | 1.82 |
99 | 100 | 4.021368 | TGTTTGACCGGGTTTTCAGAAAAA | 60.021 | 37.500 | 10.00 | 0.00 | 31.13 | 1.94 |
100 | 101 | 3.510360 | TGTTTGACCGGGTTTTCAGAAAA | 59.490 | 39.130 | 6.32 | 4.06 | 0.00 | 2.29 |
101 | 102 | 3.090037 | TGTTTGACCGGGTTTTCAGAAA | 58.910 | 40.909 | 6.32 | 0.00 | 0.00 | 2.52 |
102 | 103 | 2.724454 | TGTTTGACCGGGTTTTCAGAA | 58.276 | 42.857 | 6.32 | 0.00 | 0.00 | 3.02 |
103 | 104 | 2.421751 | TGTTTGACCGGGTTTTCAGA | 57.578 | 45.000 | 6.32 | 0.00 | 0.00 | 3.27 |
104 | 105 | 2.862140 | GCATGTTTGACCGGGTTTTCAG | 60.862 | 50.000 | 6.32 | 0.00 | 0.00 | 3.02 |
105 | 106 | 1.067821 | GCATGTTTGACCGGGTTTTCA | 59.932 | 47.619 | 6.32 | 0.00 | 0.00 | 2.69 |
106 | 107 | 1.067821 | TGCATGTTTGACCGGGTTTTC | 59.932 | 47.619 | 6.32 | 0.00 | 0.00 | 2.29 |
107 | 108 | 1.115467 | TGCATGTTTGACCGGGTTTT | 58.885 | 45.000 | 6.32 | 0.00 | 0.00 | 2.43 |
108 | 109 | 0.387565 | GTGCATGTTTGACCGGGTTT | 59.612 | 50.000 | 6.32 | 0.00 | 0.00 | 3.27 |
109 | 110 | 0.467290 | AGTGCATGTTTGACCGGGTT | 60.467 | 50.000 | 6.32 | 0.00 | 0.00 | 4.11 |
110 | 111 | 0.889186 | GAGTGCATGTTTGACCGGGT | 60.889 | 55.000 | 6.32 | 0.00 | 0.00 | 5.28 |
111 | 112 | 1.875963 | GAGTGCATGTTTGACCGGG | 59.124 | 57.895 | 6.32 | 0.00 | 0.00 | 5.73 |
112 | 113 | 1.227999 | ACGAGTGCATGTTTGACCGG | 61.228 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
113 | 114 | 0.586319 | AACGAGTGCATGTTTGACCG | 59.414 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
114 | 115 | 2.774439 | AAACGAGTGCATGTTTGACC | 57.226 | 45.000 | 12.15 | 0.00 | 36.96 | 4.02 |
118 | 119 | 4.370364 | AAAGTCAAACGAGTGCATGTTT | 57.630 | 36.364 | 8.36 | 8.36 | 38.76 | 2.83 |
119 | 120 | 4.104776 | CAAAAGTCAAACGAGTGCATGTT | 58.895 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
120 | 121 | 3.376859 | TCAAAAGTCAAACGAGTGCATGT | 59.623 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
121 | 122 | 3.725740 | GTCAAAAGTCAAACGAGTGCATG | 59.274 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
122 | 123 | 3.376859 | TGTCAAAAGTCAAACGAGTGCAT | 59.623 | 39.130 | 0.00 | 0.00 | 0.00 | 3.96 |
123 | 124 | 2.744741 | TGTCAAAAGTCAAACGAGTGCA | 59.255 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
124 | 125 | 3.398954 | TGTCAAAAGTCAAACGAGTGC | 57.601 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
125 | 126 | 5.627367 | TGTTTTGTCAAAAGTCAAACGAGTG | 59.373 | 36.000 | 11.03 | 0.00 | 34.05 | 3.51 |
126 | 127 | 5.764131 | TGTTTTGTCAAAAGTCAAACGAGT | 58.236 | 33.333 | 11.03 | 0.00 | 34.05 | 4.18 |
127 | 128 | 6.683090 | TTGTTTTGTCAAAAGTCAAACGAG | 57.317 | 33.333 | 11.03 | 0.00 | 34.05 | 4.18 |
128 | 129 | 7.644986 | ATTTGTTTTGTCAAAAGTCAAACGA | 57.355 | 28.000 | 20.44 | 5.56 | 40.05 | 3.85 |
129 | 130 | 8.428536 | TGTATTTGTTTTGTCAAAAGTCAAACG | 58.571 | 29.630 | 20.44 | 0.00 | 40.05 | 3.60 |
130 | 131 | 9.523730 | GTGTATTTGTTTTGTCAAAAGTCAAAC | 57.476 | 29.630 | 20.44 | 14.09 | 40.05 | 2.93 |
131 | 132 | 8.713271 | GGTGTATTTGTTTTGTCAAAAGTCAAA | 58.287 | 29.630 | 20.36 | 20.36 | 40.05 | 2.69 |
132 | 133 | 8.091449 | AGGTGTATTTGTTTTGTCAAAAGTCAA | 58.909 | 29.630 | 11.03 | 9.87 | 40.05 | 3.18 |
133 | 134 | 7.607250 | AGGTGTATTTGTTTTGTCAAAAGTCA | 58.393 | 30.769 | 11.03 | 4.33 | 40.05 | 3.41 |
134 | 135 | 8.474006 | AAGGTGTATTTGTTTTGTCAAAAGTC | 57.526 | 30.769 | 11.03 | 1.75 | 40.05 | 3.01 |
151 | 152 | 8.881262 | CCCTCTGTTCCTTTATATAAGGTGTAT | 58.119 | 37.037 | 4.13 | 0.00 | 38.55 | 2.29 |
152 | 153 | 8.069356 | TCCCTCTGTTCCTTTATATAAGGTGTA | 58.931 | 37.037 | 4.13 | 0.00 | 38.55 | 2.90 |
153 | 154 | 6.906901 | TCCCTCTGTTCCTTTATATAAGGTGT | 59.093 | 38.462 | 4.13 | 0.00 | 38.55 | 4.16 |
154 | 155 | 7.071321 | ACTCCCTCTGTTCCTTTATATAAGGTG | 59.929 | 40.741 | 4.13 | 0.00 | 38.55 | 4.00 |
155 | 156 | 7.140304 | ACTCCCTCTGTTCCTTTATATAAGGT | 58.860 | 38.462 | 4.13 | 0.00 | 38.55 | 3.50 |
156 | 157 | 7.619512 | ACTCCCTCTGTTCCTTTATATAAGG | 57.380 | 40.000 | 0.00 | 0.00 | 38.78 | 2.69 |
160 | 161 | 9.004231 | ACAAATACTCCCTCTGTTCCTTTATAT | 57.996 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
161 | 162 | 8.388656 | ACAAATACTCCCTCTGTTCCTTTATA | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
162 | 163 | 7.272144 | ACAAATACTCCCTCTGTTCCTTTAT | 57.728 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
163 | 164 | 6.697641 | ACAAATACTCCCTCTGTTCCTTTA | 57.302 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
164 | 165 | 5.584551 | ACAAATACTCCCTCTGTTCCTTT | 57.415 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
165 | 166 | 5.584551 | AACAAATACTCCCTCTGTTCCTT | 57.415 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
166 | 167 | 5.584551 | AAACAAATACTCCCTCTGTTCCT | 57.415 | 39.130 | 0.00 | 0.00 | 30.16 | 3.36 |
167 | 168 | 7.754851 | TTTAAACAAATACTCCCTCTGTTCC | 57.245 | 36.000 | 0.00 | 0.00 | 30.16 | 3.62 |
212 | 213 | 6.849085 | AATAATGTGTGGGCATTCAAGTAA | 57.151 | 33.333 | 0.00 | 0.00 | 39.50 | 2.24 |
213 | 214 | 7.014134 | CCATAATAATGTGTGGGCATTCAAGTA | 59.986 | 37.037 | 0.00 | 0.00 | 39.50 | 2.24 |
277 | 278 | 3.754323 | CACAAGGTGCCTCGGTTTAATTA | 59.246 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
299 | 300 | 3.427233 | GGCAAGAGAGTTCACATCATTGC | 60.427 | 47.826 | 0.00 | 0.00 | 39.23 | 3.56 |
436 | 437 | 8.026607 | CCCGTTTAGTGTCATTGTATCATTTTT | 58.973 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
449 | 450 | 4.783667 | GGCACCCGTTTAGTGTCA | 57.216 | 55.556 | 0.00 | 0.00 | 39.66 | 3.58 |
462 | 463 | 0.532196 | GTTATGTAGAGGCCGGGCAC | 60.532 | 60.000 | 31.59 | 24.79 | 0.00 | 5.01 |
475 | 476 | 5.900865 | TGATTGTGTGCATCATGTTATGT | 57.099 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
508 | 509 | 9.968870 | GTTGTAAAATGGAAGTTTGTGGTTATA | 57.031 | 29.630 | 0.00 | 0.00 | 33.75 | 0.98 |
599 | 601 | 2.309755 | TGACCAGGCATGATTTCCTCTT | 59.690 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
603 | 605 | 2.549754 | CGTATGACCAGGCATGATTTCC | 59.450 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
608 | 610 | 0.104855 | GAGCGTATGACCAGGCATGA | 59.895 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
623 | 625 | 1.202428 | GGCTTCTACCCAGTTAGAGCG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 5.03 |
644 | 646 | 6.109359 | CGGAGAACAGAGACCTTTTTATGAT | 58.891 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
649 | 651 | 3.494573 | GGACGGAGAACAGAGACCTTTTT | 60.495 | 47.826 | 0.00 | 0.00 | 0.00 | 1.94 |
663 | 665 | 6.839454 | ACTTATATCTTGTAGAGGACGGAGA | 58.161 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
698 | 700 | 7.437713 | TCTAGGTTGATCATTCCTGTACATT | 57.562 | 36.000 | 22.42 | 4.96 | 33.34 | 2.71 |
759 | 764 | 3.578716 | GCACTATGGCTTACTAGGGATGA | 59.421 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
773 | 778 | 5.291971 | GCAATCTTATTTTGGGCACTATGG | 58.708 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
786 | 791 | 3.737559 | TGTGAGGGTGGCAATCTTATT | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
825 | 830 | 6.691255 | ACTGGTAGTAGGGTATTGACAAAA | 57.309 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
830 | 835 | 4.400251 | CGACAACTGGTAGTAGGGTATTGA | 59.600 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
845 | 850 | 2.430956 | GCGCAATATGTTCGACAACTG | 58.569 | 47.619 | 0.30 | 0.00 | 33.17 | 3.16 |
849 | 854 | 1.346879 | GCGCGCAATATGTTCGACA | 59.653 | 52.632 | 29.10 | 0.00 | 0.00 | 4.35 |
909 | 914 | 0.181114 | AGTTTGCTCTGCAGTGTGGA | 59.819 | 50.000 | 14.67 | 3.96 | 40.61 | 4.02 |
951 | 957 | 1.462283 | CTTGCCAACATGACGAGACTG | 59.538 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
978 | 984 | 8.963725 | GCCATAGTTTTGGTAAGGTAGTAAAAT | 58.036 | 33.333 | 0.00 | 0.00 | 39.11 | 1.82 |
996 | 1002 | 3.374058 | GCATAGTTTGACACGCCATAGTT | 59.626 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
997 | 1003 | 2.936498 | GCATAGTTTGACACGCCATAGT | 59.064 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
998 | 1004 | 3.198068 | AGCATAGTTTGACACGCCATAG | 58.802 | 45.455 | 0.00 | 0.00 | 0.00 | 2.23 |
1000 | 1006 | 2.113860 | AGCATAGTTTGACACGCCAT | 57.886 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1001 | 1007 | 1.535028 | CAAGCATAGTTTGACACGCCA | 59.465 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
1002 | 1008 | 1.535462 | ACAAGCATAGTTTGACACGCC | 59.465 | 47.619 | 0.61 | 0.00 | 0.00 | 5.68 |
1005 | 1011 | 7.746475 | GTGATCTTAACAAGCATAGTTTGACAC | 59.254 | 37.037 | 0.61 | 0.00 | 0.00 | 3.67 |
1006 | 1012 | 7.443879 | TGTGATCTTAACAAGCATAGTTTGACA | 59.556 | 33.333 | 0.61 | 0.00 | 0.00 | 3.58 |
1020 | 1026 | 6.428083 | TTTAGTGGAGGTGTGATCTTAACA | 57.572 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
1065 | 1071 | 5.130477 | AGTGGAAACTCAAACTACCTCTTCA | 59.870 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1097 | 1104 | 3.296322 | TTTTTGCAAGTATTCCTGCCG | 57.704 | 42.857 | 0.00 | 0.00 | 0.00 | 5.69 |
1127 | 1134 | 9.853177 | AGTTCAAGAATATATTTTTCCCGATCT | 57.147 | 29.630 | 0.00 | 0.00 | 0.00 | 2.75 |
1259 | 1266 | 6.657966 | ACAGCTTAATCCTTTAACCAGTAACC | 59.342 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
1273 | 1280 | 8.986477 | ATGAAATGTTTTGTACAGCTTAATCC | 57.014 | 30.769 | 0.00 | 0.00 | 40.83 | 3.01 |
1274 | 1281 | 9.624697 | TGATGAAATGTTTTGTACAGCTTAATC | 57.375 | 29.630 | 0.00 | 0.00 | 40.83 | 1.75 |
1280 | 1287 | 6.646240 | ACCAATGATGAAATGTTTTGTACAGC | 59.354 | 34.615 | 0.00 | 0.00 | 40.83 | 4.40 |
1281 | 1288 | 8.592105 | AACCAATGATGAAATGTTTTGTACAG | 57.408 | 30.769 | 0.00 | 0.00 | 40.83 | 2.74 |
1310 | 1317 | 6.860790 | TGGAGTGAACACAACCATATACTA | 57.139 | 37.500 | 15.34 | 0.00 | 36.00 | 1.82 |
1332 | 1339 | 8.442632 | AATCAGAGTGAACACAACCATATATG | 57.557 | 34.615 | 5.68 | 5.68 | 0.00 | 1.78 |
1333 | 1340 | 8.896744 | CAAATCAGAGTGAACACAACCATATAT | 58.103 | 33.333 | 7.68 | 0.00 | 0.00 | 0.86 |
1334 | 1341 | 7.882791 | ACAAATCAGAGTGAACACAACCATATA | 59.117 | 33.333 | 7.68 | 0.00 | 0.00 | 0.86 |
1335 | 1342 | 6.716628 | ACAAATCAGAGTGAACACAACCATAT | 59.283 | 34.615 | 7.68 | 0.00 | 0.00 | 1.78 |
1336 | 1343 | 6.061441 | ACAAATCAGAGTGAACACAACCATA | 58.939 | 36.000 | 7.68 | 0.00 | 0.00 | 2.74 |
1337 | 1344 | 4.889409 | ACAAATCAGAGTGAACACAACCAT | 59.111 | 37.500 | 7.68 | 0.00 | 0.00 | 3.55 |
1338 | 1345 | 4.269183 | ACAAATCAGAGTGAACACAACCA | 58.731 | 39.130 | 7.68 | 0.00 | 0.00 | 3.67 |
1339 | 1346 | 4.900635 | ACAAATCAGAGTGAACACAACC | 57.099 | 40.909 | 7.68 | 0.00 | 0.00 | 3.77 |
1403 | 1411 | 7.651027 | AATTGAATGGTATGAAAGAGGGAAG | 57.349 | 36.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1456 | 1464 | 3.743396 | GTCTCTGTTGTGGCTTTCTACTG | 59.257 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
1459 | 1467 | 4.380531 | CAAGTCTCTGTTGTGGCTTTCTA | 58.619 | 43.478 | 0.00 | 0.00 | 30.38 | 2.10 |
1468 | 1476 | 2.158769 | TCACATGGCAAGTCTCTGTTGT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
1480 | 1488 | 2.118313 | CATGTCTTCCTCACATGGCA | 57.882 | 50.000 | 0.00 | 0.00 | 45.06 | 4.92 |
1494 | 1502 | 3.985279 | GGCTTTTCGTTAAAACCCATGTC | 59.015 | 43.478 | 0.00 | 0.00 | 32.61 | 3.06 |
1500 | 1508 | 3.720949 | AGGTGGCTTTTCGTTAAAACC | 57.279 | 42.857 | 0.00 | 0.00 | 31.37 | 3.27 |
1536 | 1544 | 1.847999 | CACTGTTTGCACTTTTCGCAG | 59.152 | 47.619 | 0.00 | 0.00 | 41.18 | 5.18 |
1540 | 1548 | 2.450160 | CGTCCACTGTTTGCACTTTTC | 58.550 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
1556 | 1564 | 1.078426 | CCTCCAATGTCACCCGTCC | 60.078 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1559 | 1567 | 0.324943 | AAGTCCTCCAATGTCACCCG | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1586 | 1594 | 2.282674 | AGTGTCACCCGTCCGCTA | 60.283 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
1587 | 1595 | 3.991051 | CAGTGTCACCCGTCCGCT | 61.991 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
1588 | 1596 | 4.295119 | ACAGTGTCACCCGTCCGC | 62.295 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1589 | 1597 | 2.355837 | CACAGTGTCACCCGTCCG | 60.356 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1590 | 1598 | 2.030562 | CCACAGTGTCACCCGTCC | 59.969 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1591 | 1599 | 2.665185 | GCCACAGTGTCACCCGTC | 60.665 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
1592 | 1600 | 2.337879 | AATGCCACAGTGTCACCCGT | 62.338 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1593 | 1601 | 0.321210 | TAATGCCACAGTGTCACCCG | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1594 | 1602 | 1.904287 | TTAATGCCACAGTGTCACCC | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1595 | 1603 | 3.317993 | ACTTTTAATGCCACAGTGTCACC | 59.682 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1596 | 1604 | 4.568152 | ACTTTTAATGCCACAGTGTCAC | 57.432 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
1598 | 1606 | 5.438761 | AGAACTTTTAATGCCACAGTGTC | 57.561 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
1679 | 2439 | 4.142271 | TGCGGTTTCAACAGAAACTTCAAT | 60.142 | 37.500 | 17.45 | 0.00 | 46.47 | 2.57 |
1700 | 2460 | 0.241481 | TATTTTGAAACGGGCCGTGC | 59.759 | 50.000 | 34.87 | 26.85 | 39.99 | 5.34 |
1731 | 2491 | 5.175090 | AGCGCTAAGAATAATTTGGAAGC | 57.825 | 39.130 | 8.99 | 0.00 | 0.00 | 3.86 |
1749 | 2509 | 0.522705 | TCAGTCGACATCGTAAGCGC | 60.523 | 55.000 | 19.50 | 0.00 | 40.80 | 5.92 |
1750 | 2510 | 1.891178 | TTCAGTCGACATCGTAAGCG | 58.109 | 50.000 | 19.50 | 0.00 | 40.80 | 4.68 |
1856 | 2667 | 8.075574 | TGATGTTTTCATATGATTTGATACCGC | 58.924 | 33.333 | 6.17 | 0.00 | 41.05 | 5.68 |
1900 | 2711 | 8.267894 | TCCTAACTTAGAAGCTGCTTAATCAAT | 58.732 | 33.333 | 15.95 | 3.85 | 0.00 | 2.57 |
1909 | 2720 | 4.457834 | TGACTCCTAACTTAGAAGCTGC | 57.542 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
1920 | 2731 | 6.645827 | GTGGTAAGAACTCTTTGACTCCTAAC | 59.354 | 42.308 | 0.00 | 0.00 | 37.40 | 2.34 |
1952 | 2763 | 7.099764 | GTCACTTAGTTCAAGATCATCTCCAA | 58.900 | 38.462 | 0.00 | 0.00 | 37.71 | 3.53 |
2022 | 2833 | 1.410153 | GCGGGTATCGAAGTTAAGGGA | 59.590 | 52.381 | 0.00 | 0.00 | 42.43 | 4.20 |
2178 | 2990 | 5.708948 | TCAAGAAATAATTCAAGTTGCCCG | 58.291 | 37.500 | 0.00 | 0.00 | 38.06 | 6.13 |
2211 | 3023 | 6.041296 | CCTCCCCGACTAAAGTTATTAGCTTA | 59.959 | 42.308 | 0.00 | 0.00 | 0.00 | 3.09 |
2232 | 3044 | 2.182030 | CGTGTCGCTTCCTCCTCC | 59.818 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2321 | 3133 | 2.153645 | CATATTGATGGCGCCTTAGCA | 58.846 | 47.619 | 29.70 | 15.13 | 39.83 | 3.49 |
2325 | 3137 | 3.430042 | AGATCATATTGATGGCGCCTT | 57.570 | 42.857 | 29.70 | 22.95 | 37.20 | 4.35 |
2352 | 3164 | 8.612619 | GCGGAAGAGATAAGAAATTTCACATAA | 58.387 | 33.333 | 19.99 | 1.29 | 0.00 | 1.90 |
2355 | 3167 | 5.937540 | TGCGGAAGAGATAAGAAATTTCACA | 59.062 | 36.000 | 19.99 | 7.50 | 0.00 | 3.58 |
2361 | 3173 | 5.344743 | TGACTGCGGAAGAGATAAGAAAT | 57.655 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2382 | 3194 | 9.675464 | TGACTAACCCTTACCATAGTAAAATTG | 57.325 | 33.333 | 0.00 | 0.00 | 37.99 | 2.32 |
2455 | 3267 | 6.222389 | AGAGAGAGTCAAATGAGTTTCTGTG | 58.778 | 40.000 | 14.09 | 0.00 | 38.56 | 3.66 |
2459 | 3271 | 6.099341 | GGAGAGAGAGAGTCAAATGAGTTTC | 58.901 | 44.000 | 0.00 | 1.56 | 0.00 | 2.78 |
2492 | 3306 | 8.840833 | AACTTTAAAACCTTCAAGAGCAAAAA | 57.159 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
2494 | 3308 | 8.716909 | CAAAACTTTAAAACCTTCAAGAGCAAA | 58.283 | 29.630 | 0.00 | 0.00 | 0.00 | 3.68 |
2497 | 3311 | 6.312672 | TGCAAAACTTTAAAACCTTCAAGAGC | 59.687 | 34.615 | 0.00 | 0.00 | 0.00 | 4.09 |
2498 | 3312 | 7.826260 | TGCAAAACTTTAAAACCTTCAAGAG | 57.174 | 32.000 | 0.00 | 0.00 | 0.00 | 2.85 |
2518 | 3332 | 5.957771 | AGGAGTCTAGTGGAAATATGCAA | 57.042 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
2532 | 3346 | 8.603898 | TGAAAGTAATGGTTCATAGGAGTCTA | 57.396 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2616 | 3430 | 4.519350 | GCTCAAAAACAAGTTAGCTAGGGT | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2621 | 3435 | 4.981806 | TGTGCTCAAAAACAAGTTAGCT | 57.018 | 36.364 | 0.00 | 0.00 | 0.00 | 3.32 |
2669 | 3483 | 6.771267 | ACTAAAGCTAATAAGGGTTATGTGGC | 59.229 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
2732 | 3546 | 0.376152 | CATTGTGGTGCGAGAGATGC | 59.624 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2739 | 3553 | 3.724508 | AAAAATCACATTGTGGTGCGA | 57.275 | 38.095 | 16.46 | 0.00 | 38.66 | 5.10 |
2780 | 3596 | 3.115390 | ACCATATGTGCCCTCACTTACT | 58.885 | 45.455 | 1.24 | 0.00 | 43.49 | 2.24 |
2832 | 3648 | 6.613755 | TTTCAAGGTAGAGCAAACAACTAC | 57.386 | 37.500 | 0.00 | 0.00 | 36.69 | 2.73 |
2833 | 3649 | 8.911918 | TTATTTCAAGGTAGAGCAAACAACTA | 57.088 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
2935 | 3752 | 5.887035 | TGTATGACATGCATTCAATCCTTCA | 59.113 | 36.000 | 13.21 | 1.29 | 38.44 | 3.02 |
2960 | 3777 | 9.624373 | ATCTCTAAGCAACATGAAGTAAATGAT | 57.376 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
2998 | 3815 | 4.379813 | CCCGCATGTTGCATAGGATATTTC | 60.380 | 45.833 | 0.00 | 0.00 | 45.36 | 2.17 |
3007 | 3824 | 1.001517 | ACACCCCGCATGTTGCATA | 60.002 | 52.632 | 0.00 | 0.00 | 45.36 | 3.14 |
3010 | 3827 | 4.101790 | CGACACCCCGCATGTTGC | 62.102 | 66.667 | 0.00 | 0.00 | 40.69 | 4.17 |
3018 | 3835 | 1.386533 | ATACACTAGACGACACCCCG | 58.613 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
3019 | 3836 | 6.830873 | ATTATATACACTAGACGACACCCC | 57.169 | 41.667 | 0.00 | 0.00 | 0.00 | 4.95 |
3150 | 5470 | 9.708222 | GCAAGTAGTCAAGTGTAATCATTTATG | 57.292 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
3151 | 5471 | 9.448438 | TGCAAGTAGTCAAGTGTAATCATTTAT | 57.552 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3152 | 5472 | 8.840833 | TGCAAGTAGTCAAGTGTAATCATTTA | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3153 | 5473 | 7.744087 | TGCAAGTAGTCAAGTGTAATCATTT | 57.256 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3156 | 5476 | 7.744087 | AAATGCAAGTAGTCAAGTGTAATCA | 57.256 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3157 | 5477 | 8.289618 | TGAAAATGCAAGTAGTCAAGTGTAATC | 58.710 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3158 | 5478 | 8.165239 | TGAAAATGCAAGTAGTCAAGTGTAAT | 57.835 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
3165 | 5487 | 9.023962 | AGGAATAATGAAAATGCAAGTAGTCAA | 57.976 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
3210 | 5532 | 2.018542 | ATACGTGACCGGGTTGAATG | 57.981 | 50.000 | 6.32 | 0.00 | 38.78 | 2.67 |
3215 | 5537 | 3.953612 | TCTTACATATACGTGACCGGGTT | 59.046 | 43.478 | 6.32 | 0.00 | 38.78 | 4.11 |
3219 | 5541 | 5.428496 | TTCCTCTTACATATACGTGACCG | 57.572 | 43.478 | 0.00 | 0.00 | 40.83 | 4.79 |
3226 | 5548 | 9.685828 | GTCAGACTGATTTCCTCTTACATATAC | 57.314 | 37.037 | 8.73 | 0.00 | 0.00 | 1.47 |
3232 | 5554 | 7.327214 | AGAATGTCAGACTGATTTCCTCTTAC | 58.673 | 38.462 | 19.58 | 3.16 | 0.00 | 2.34 |
3269 | 5591 | 9.252962 | CCTCTTTGCACCAATATCATTTAATTC | 57.747 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
3310 | 5632 | 2.566724 | ACAACATCCAATTGGCGGAATT | 59.433 | 40.909 | 20.33 | 6.54 | 35.77 | 2.17 |
3338 | 5660 | 8.302438 | ACATTCTCTTGATCCATGTTTTCTTTC | 58.698 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
3490 | 5812 | 5.946298 | TCATGTTGTTGAATGAGATCAAGC | 58.054 | 37.500 | 0.00 | 0.00 | 39.84 | 4.01 |
3537 | 5859 | 5.101648 | TCTAAAATAGTAACAACCGGGGG | 57.898 | 43.478 | 6.32 | 0.00 | 0.00 | 5.40 |
3592 | 5915 | 2.823959 | AGAGGTTAATGTGTCCCGGTA | 58.176 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
3595 | 5918 | 6.753107 | AATTTAAGAGGTTAATGTGTCCCG | 57.247 | 37.500 | 0.00 | 0.00 | 0.00 | 5.14 |
3640 | 5963 | 5.013079 | TGAATGTAGAGGATCCAGTGTTGTT | 59.987 | 40.000 | 15.82 | 0.12 | 33.66 | 2.83 |
3657 | 5980 | 3.704800 | TTCCCGACCAATGTGAATGTA | 57.295 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
3671 | 5994 | 3.067461 | CCATGTGAAAGTTGTTTTCCCGA | 59.933 | 43.478 | 0.00 | 0.00 | 43.72 | 5.14 |
3692 | 6015 | 3.055747 | CCCTTCACCTACTGACTTTCTCC | 60.056 | 52.174 | 0.00 | 0.00 | 0.00 | 3.71 |
3696 | 6019 | 2.638363 | GGACCCTTCACCTACTGACTTT | 59.362 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3702 | 6025 | 0.910088 | GGCAGGACCCTTCACCTACT | 60.910 | 60.000 | 0.00 | 0.00 | 34.87 | 2.57 |
3733 | 6056 | 2.369394 | GGGTGGACTTTTGCTCATAGG | 58.631 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
3736 | 6059 | 0.609131 | CCGGGTGGACTTTTGCTCAT | 60.609 | 55.000 | 0.00 | 0.00 | 37.49 | 2.90 |
3738 | 6061 | 1.971695 | CCCGGGTGGACTTTTGCTC | 60.972 | 63.158 | 14.18 | 0.00 | 37.49 | 4.26 |
3741 | 6064 | 0.958822 | CTTTCCCGGGTGGACTTTTG | 59.041 | 55.000 | 22.86 | 0.00 | 45.11 | 2.44 |
3742 | 6065 | 0.178973 | CCTTTCCCGGGTGGACTTTT | 60.179 | 55.000 | 22.86 | 0.00 | 45.11 | 2.27 |
3748 | 6071 | 3.523374 | AAAGGCCTTTCCCGGGTGG | 62.523 | 63.158 | 25.47 | 21.31 | 34.51 | 4.61 |
3749 | 6072 | 1.977009 | GAAAGGCCTTTCCCGGGTG | 60.977 | 63.158 | 38.01 | 12.04 | 42.20 | 4.61 |
3762 | 6085 | 3.332034 | ACGAAATGACGGTTAGGAAAGG | 58.668 | 45.455 | 0.00 | 0.00 | 37.61 | 3.11 |
3769 | 6092 | 4.856487 | CGGTTAGTAACGAAATGACGGTTA | 59.144 | 41.667 | 6.94 | 0.00 | 37.61 | 2.85 |
3775 | 6098 | 3.316071 | TGCCGGTTAGTAACGAAATGA | 57.684 | 42.857 | 1.90 | 0.00 | 0.00 | 2.57 |
3782 | 6105 | 5.813080 | ATGAAAGATTGCCGGTTAGTAAC | 57.187 | 39.130 | 1.90 | 4.32 | 0.00 | 2.50 |
3788 | 6111 | 2.029110 | CACCAATGAAAGATTGCCGGTT | 60.029 | 45.455 | 1.90 | 0.00 | 0.00 | 4.44 |
3798 | 6121 | 4.542735 | GAAACCCGTTACACCAATGAAAG | 58.457 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
3814 | 6137 | 7.272244 | CCAAAAATATATTGGTCAGGAAACCC | 58.728 | 38.462 | 10.64 | 0.00 | 41.95 | 4.11 |
3848 | 6171 | 6.797033 | GTCGGTTGACAAATGATGAAACTAAG | 59.203 | 38.462 | 0.00 | 0.00 | 44.82 | 2.18 |
3867 | 6191 | 0.391597 | ATGTTGTCGGACAGTCGGTT | 59.608 | 50.000 | 11.14 | 0.00 | 32.19 | 4.44 |
3869 | 6193 | 1.909376 | CTATGTTGTCGGACAGTCGG | 58.091 | 55.000 | 11.14 | 1.59 | 32.19 | 4.79 |
3874 | 6198 | 1.338674 | CCAAGGCTATGTTGTCGGACA | 60.339 | 52.381 | 6.76 | 6.76 | 0.00 | 4.02 |
3875 | 6199 | 1.338769 | ACCAAGGCTATGTTGTCGGAC | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
3909 | 6233 | 5.997746 | TGGAAAATCTCACAACTAGACCAAG | 59.002 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3933 | 6257 | 0.458543 | CGCTGTCACATAGTCGCCTT | 60.459 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3934 | 6258 | 1.139734 | CGCTGTCACATAGTCGCCT | 59.860 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
3937 | 6261 | 2.194800 | ACATCGCTGTCACATAGTCG | 57.805 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4025 | 6351 | 0.034574 | TGGTTGCTTGGTCAGTGTGT | 60.035 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
4054 | 6380 | 8.698973 | TTTTGAATCCACACTCTTTTGGTATA | 57.301 | 30.769 | 0.00 | 0.00 | 34.19 | 1.47 |
4055 | 6381 | 7.595819 | TTTTGAATCCACACTCTTTTGGTAT | 57.404 | 32.000 | 0.00 | 0.00 | 34.19 | 2.73 |
4056 | 6382 | 7.595819 | ATTTTGAATCCACACTCTTTTGGTA | 57.404 | 32.000 | 0.00 | 0.00 | 34.19 | 3.25 |
4057 | 6383 | 5.930837 | TTTTGAATCCACACTCTTTTGGT | 57.069 | 34.783 | 0.00 | 0.00 | 34.19 | 3.67 |
4059 | 6385 | 9.695526 | TTGATATTTTGAATCCACACTCTTTTG | 57.304 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
4110 | 6437 | 1.608590 | CCATTATCATCCGGTTGTGGC | 59.391 | 52.381 | 12.19 | 0.00 | 0.00 | 5.01 |
4288 | 6628 | 7.189079 | TGAATGTGGTGTGTATTATGGTCTA | 57.811 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4292 | 6632 | 7.572523 | AGATTGAATGTGGTGTGTATTATGG | 57.427 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4303 | 6643 | 2.819608 | CCGGAACAAGATTGAATGTGGT | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
4304 | 6644 | 2.819608 | ACCGGAACAAGATTGAATGTGG | 59.180 | 45.455 | 9.46 | 0.00 | 0.00 | 4.17 |
4323 | 6663 | 5.886960 | AGTGTCTTCATAATGCAGAAACC | 57.113 | 39.130 | 0.00 | 0.00 | 29.67 | 3.27 |
4361 | 6701 | 9.498176 | GGAACTGTAACTCCTAAAATGAAACTA | 57.502 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4404 | 6744 | 4.428294 | AGTGCAACATATGTGCTCCTAT | 57.572 | 40.909 | 22.31 | 8.31 | 41.43 | 2.57 |
4431 | 6771 | 4.230314 | GCTGTACTAGATGCGATTGAGA | 57.770 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
4439 | 6779 | 2.776312 | TGTAGCGCTGTACTAGATGC | 57.224 | 50.000 | 22.90 | 0.00 | 0.00 | 3.91 |
4451 | 6791 | 2.094762 | TTCTCCCTCTTTTGTAGCGC | 57.905 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
4454 | 6794 | 6.054860 | TCTTCCATTCTCCCTCTTTTGTAG | 57.945 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
4469 | 6809 | 9.028284 | ACAATGAGTATTTGTTCATCTTCCATT | 57.972 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
4475 | 6815 | 9.903682 | CTTTTGACAATGAGTATTTGTTCATCT | 57.096 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
4476 | 6816 | 9.897744 | TCTTTTGACAATGAGTATTTGTTCATC | 57.102 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
4487 | 6827 | 9.305925 | GTTCATCTTTTTCTTTTGACAATGAGT | 57.694 | 29.630 | 0.00 | 0.00 | 29.76 | 3.41 |
4488 | 6828 | 9.304731 | TGTTCATCTTTTTCTTTTGACAATGAG | 57.695 | 29.630 | 0.00 | 0.00 | 29.76 | 2.90 |
4489 | 6829 | 9.650539 | TTGTTCATCTTTTTCTTTTGACAATGA | 57.349 | 25.926 | 0.00 | 0.00 | 30.46 | 2.57 |
4554 | 6897 | 4.447054 | TGTTTGACTTGCTTTGTGTTGTTG | 59.553 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
4555 | 6898 | 4.447389 | GTGTTTGACTTGCTTTGTGTTGTT | 59.553 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.