Multiple sequence alignment - TraesCS7A01G339300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G339300 chr7A 100.000 4707 0 0 1 4707 496966686 496961980 0.000000e+00 8693.0
1 TraesCS7A01G339300 chr7A 80.645 310 53 6 3257 3564 497277484 497277180 2.830000e-57 233.0
2 TraesCS7A01G339300 chr7B 87.470 2067 176 40 2679 4707 462808544 462806523 0.000000e+00 2305.0
3 TraesCS7A01G339300 chr7B 88.722 1534 128 23 1821 3338 462810047 462808543 0.000000e+00 1832.0
4 TraesCS7A01G339300 chr7B 87.800 1418 112 30 180 1589 462812442 462811078 0.000000e+00 1604.0
5 TraesCS7A01G339300 chr7B 91.935 186 12 1 1 183 711060281 711060096 1.680000e-64 257.0
6 TraesCS7A01G339300 chr7B 81.410 312 48 9 3257 3564 463034823 463034518 3.640000e-61 246.0
7 TraesCS7A01G339300 chr7D 87.173 2066 168 49 2679 4707 446307907 446305902 0.000000e+00 2257.0
8 TraesCS7A01G339300 chr7D 89.154 1383 110 23 1821 3193 446309567 446308215 0.000000e+00 1687.0
9 TraesCS7A01G339300 chr7D 87.438 1417 115 26 180 1589 446311944 446310584 0.000000e+00 1572.0
10 TraesCS7A01G339300 chr7D 86.310 168 12 1 1651 1818 446309777 446309621 6.260000e-39 172.0
11 TraesCS7A01G339300 chr7D 95.238 63 3 0 3276 3338 446307968 446307906 3.000000e-17 100.0
12 TraesCS7A01G339300 chr6B 92.857 182 13 0 1 182 188830879 188831060 1.000000e-66 265.0
13 TraesCS7A01G339300 chr6B 81.884 276 46 4 3259 3532 136450174 136449901 3.660000e-56 230.0
14 TraesCS7A01G339300 chr4B 92.857 182 13 0 1 182 387492050 387491869 1.000000e-66 265.0
15 TraesCS7A01G339300 chr4B 91.579 190 15 1 1 190 630085106 630084918 1.300000e-65 261.0
16 TraesCS7A01G339300 chr3A 92.021 188 14 1 1 188 490624352 490624538 3.610000e-66 263.0
17 TraesCS7A01G339300 chr3B 92.308 182 14 0 1 182 480377021 480377202 4.670000e-65 259.0
18 TraesCS7A01G339300 chr3B 92.350 183 13 1 1 183 731036857 731036676 4.670000e-65 259.0
19 TraesCS7A01G339300 chr3B 77.869 366 69 7 622 977 723654266 723654629 2.850000e-52 217.0
20 TraesCS7A01G339300 chr3B 73.188 276 66 7 603 873 810259930 810260202 5.020000e-15 93.5
21 TraesCS7A01G339300 chr6D 91.758 182 15 0 1 182 426154542 426154723 2.170000e-63 254.0
22 TraesCS7A01G339300 chr6D 73.684 570 127 18 418 971 320111086 320111648 2.870000e-47 200.0
23 TraesCS7A01G339300 chr6D 73.356 593 115 35 527 1097 336512048 336511477 3.740000e-41 180.0
24 TraesCS7A01G339300 chr3D 91.758 182 15 0 1 182 369414242 369414423 2.170000e-63 254.0
25 TraesCS7A01G339300 chrUn 76.800 375 77 6 614 980 375573964 375573592 7.990000e-48 202.0
26 TraesCS7A01G339300 chr5D 70.926 540 130 22 567 1089 449346941 449347470 8.330000e-18 102.0
27 TraesCS7A01G339300 chr1D 73.958 288 59 11 400 675 439759014 439759297 8.330000e-18 102.0
28 TraesCS7A01G339300 chr2B 75.455 220 37 14 886 1097 749207232 749207442 1.800000e-14 91.6
29 TraesCS7A01G339300 chr5B 89.655 58 6 0 626 683 16412253 16412196 1.820000e-09 75.0
30 TraesCS7A01G339300 chr5B 89.655 58 6 0 626 683 527754951 527755008 1.820000e-09 75.0
31 TraesCS7A01G339300 chr1B 89.655 58 6 0 626 683 231334277 231334334 1.820000e-09 75.0
32 TraesCS7A01G339300 chr4D 83.333 78 11 2 418 494 57016659 57016583 2.350000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G339300 chr7A 496961980 496966686 4706 True 8693.000000 8693 100.000000 1 4707 1 chr7A.!!$R1 4706
1 TraesCS7A01G339300 chr7B 462806523 462812442 5919 True 1913.666667 2305 87.997333 180 4707 3 chr7B.!!$R3 4527
2 TraesCS7A01G339300 chr7D 446305902 446311944 6042 True 1157.600000 2257 89.062600 180 4707 5 chr7D.!!$R1 4527


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.387565 AAACCCGGTCAAACATGCAC 59.612 50.0 0.00 0.00 0.00 4.57 F
1602 1610 0.390735 AAATAGCGGACGGGTGACAC 60.391 55.0 0.00 0.00 0.00 3.67 F
1705 2465 0.378962 TTTCTGTTGAAACCGCACGG 59.621 50.0 7.71 7.71 37.27 4.94 F
3037 3854 1.386533 CGGGGTGTCGTCTAGTGTAT 58.613 55.0 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 2460 0.241481 TATTTTGAAACGGGCCGTGC 59.759 50.0 34.87 26.85 39.99 5.34 R
2732 3546 0.376152 CATTGTGGTGCGAGAGATGC 59.624 55.0 0.00 0.00 0.00 3.91 R
3702 6025 0.910088 GGCAGGACCCTTCACCTACT 60.910 60.0 0.00 0.00 34.87 2.57 R
4025 6351 0.034574 TGGTTGCTTGGTCAGTGTGT 60.035 50.0 0.00 0.00 0.00 3.72 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 6.817765 GAAACTACTTTTCATGATGGACCA 57.182 37.500 0.00 0.00 42.95 4.02
64 65 7.214467 GAAACTACTTTTCATGATGGACCAA 57.786 36.000 0.00 0.00 42.95 3.67
65 66 7.595819 AAACTACTTTTCATGATGGACCAAA 57.404 32.000 0.00 0.00 0.00 3.28
66 67 7.781324 AACTACTTTTCATGATGGACCAAAT 57.219 32.000 0.00 0.00 0.00 2.32
67 68 8.877864 AACTACTTTTCATGATGGACCAAATA 57.122 30.769 0.00 0.00 0.00 1.40
68 69 8.877864 ACTACTTTTCATGATGGACCAAATAA 57.122 30.769 0.00 0.00 0.00 1.40
69 70 9.479549 ACTACTTTTCATGATGGACCAAATAAT 57.520 29.630 0.00 0.00 0.00 1.28
116 117 7.948034 TGATATATTTTTCTGAAAACCCGGT 57.052 32.000 14.70 2.65 37.56 5.28
117 118 7.992008 TGATATATTTTTCTGAAAACCCGGTC 58.008 34.615 14.70 10.96 37.56 4.79
118 119 7.612244 TGATATATTTTTCTGAAAACCCGGTCA 59.388 33.333 14.70 12.98 37.56 4.02
119 120 6.658188 ATATTTTTCTGAAAACCCGGTCAA 57.342 33.333 14.70 0.00 37.56 3.18
120 121 4.803098 TTTTTCTGAAAACCCGGTCAAA 57.197 36.364 14.70 0.00 30.07 2.69
121 122 3.786516 TTTCTGAAAACCCGGTCAAAC 57.213 42.857 0.00 0.00 0.00 2.93
122 123 2.421751 TCTGAAAACCCGGTCAAACA 57.578 45.000 0.00 0.00 0.00 2.83
123 124 2.938838 TCTGAAAACCCGGTCAAACAT 58.061 42.857 0.00 0.00 0.00 2.71
124 125 2.621055 TCTGAAAACCCGGTCAAACATG 59.379 45.455 0.00 0.00 0.00 3.21
125 126 1.067821 TGAAAACCCGGTCAAACATGC 59.932 47.619 0.00 0.00 0.00 4.06
126 127 1.067821 GAAAACCCGGTCAAACATGCA 59.932 47.619 0.00 0.00 0.00 3.96
127 128 0.387565 AAACCCGGTCAAACATGCAC 59.612 50.000 0.00 0.00 0.00 4.57
128 129 0.467290 AACCCGGTCAAACATGCACT 60.467 50.000 0.00 0.00 0.00 4.40
129 130 0.889186 ACCCGGTCAAACATGCACTC 60.889 55.000 0.00 0.00 0.00 3.51
130 131 1.497278 CCGGTCAAACATGCACTCG 59.503 57.895 0.00 0.00 0.00 4.18
131 132 1.227999 CCGGTCAAACATGCACTCGT 61.228 55.000 0.00 0.00 0.00 4.18
132 133 0.586319 CGGTCAAACATGCACTCGTT 59.414 50.000 0.00 0.00 0.00 3.85
133 134 1.002900 CGGTCAAACATGCACTCGTTT 60.003 47.619 5.20 5.20 35.76 3.60
139 140 4.370364 AAACATGCACTCGTTTGACTTT 57.630 36.364 9.29 0.00 34.16 2.66
140 141 4.370364 AACATGCACTCGTTTGACTTTT 57.630 36.364 0.00 0.00 0.00 2.27
141 142 3.694734 ACATGCACTCGTTTGACTTTTG 58.305 40.909 0.00 0.00 0.00 2.44
142 143 3.376859 ACATGCACTCGTTTGACTTTTGA 59.623 39.130 0.00 0.00 0.00 2.69
143 144 3.398954 TGCACTCGTTTGACTTTTGAC 57.601 42.857 0.00 0.00 0.00 3.18
144 145 2.744741 TGCACTCGTTTGACTTTTGACA 59.255 40.909 0.00 0.00 0.00 3.58
145 146 3.189495 TGCACTCGTTTGACTTTTGACAA 59.811 39.130 0.00 0.00 32.75 3.18
146 147 4.162812 GCACTCGTTTGACTTTTGACAAA 58.837 39.130 0.00 0.00 40.55 2.83
147 148 4.619336 GCACTCGTTTGACTTTTGACAAAA 59.381 37.500 12.62 12.62 43.25 2.44
148 149 5.442779 GCACTCGTTTGACTTTTGACAAAAC 60.443 40.000 9.30 2.17 43.25 2.43
149 150 5.627367 CACTCGTTTGACTTTTGACAAAACA 59.373 36.000 9.30 4.74 43.25 2.83
150 151 6.143118 CACTCGTTTGACTTTTGACAAAACAA 59.857 34.615 9.30 10.23 43.25 2.83
151 152 6.697892 ACTCGTTTGACTTTTGACAAAACAAA 59.302 30.769 18.35 18.35 43.25 2.83
152 153 7.383843 ACTCGTTTGACTTTTGACAAAACAAAT 59.616 29.630 22.19 11.00 43.25 2.32
153 154 8.744008 TCGTTTGACTTTTGACAAAACAAATA 57.256 26.923 22.19 15.21 43.25 1.40
154 155 8.640291 TCGTTTGACTTTTGACAAAACAAATAC 58.360 29.630 22.19 14.92 43.25 1.89
155 156 8.428536 CGTTTGACTTTTGACAAAACAAATACA 58.571 29.630 22.19 10.36 43.25 2.29
156 157 9.523730 GTTTGACTTTTGACAAAACAAATACAC 57.476 29.630 22.19 12.74 43.25 2.90
157 158 7.820044 TGACTTTTGACAAAACAAATACACC 57.180 32.000 9.30 0.00 39.09 4.16
158 159 7.607250 TGACTTTTGACAAAACAAATACACCT 58.393 30.769 9.30 0.00 39.09 4.00
159 160 8.091449 TGACTTTTGACAAAACAAATACACCTT 58.909 29.630 9.30 0.00 39.09 3.50
160 161 9.575783 GACTTTTGACAAAACAAATACACCTTA 57.424 29.630 9.30 0.00 39.09 2.69
177 178 7.138054 ACACCTTATATAAAGGAACAGAGGG 57.862 40.000 10.67 4.11 39.81 4.30
178 179 6.906901 ACACCTTATATAAAGGAACAGAGGGA 59.093 38.462 10.67 0.00 39.81 4.20
191 192 7.523415 AGGAACAGAGGGAGTATTTGTTTAAA 58.477 34.615 0.00 0.00 32.58 1.52
227 228 7.516198 AGATGATATTTACTTGAATGCCCAC 57.484 36.000 0.00 0.00 0.00 4.61
228 229 7.062322 AGATGATATTTACTTGAATGCCCACA 58.938 34.615 0.00 0.00 0.00 4.17
277 278 4.612264 AAATGCAACTTGCTCATTTCCT 57.388 36.364 14.78 0.00 45.31 3.36
299 300 1.600023 TTAAACCGAGGCACCTTGTG 58.400 50.000 3.23 0.00 36.51 3.33
315 316 3.504906 CCTTGTGCAATGATGTGAACTCT 59.495 43.478 0.00 0.00 0.00 3.24
324 325 4.025040 TGATGTGAACTCTCTTGCCATT 57.975 40.909 0.00 0.00 0.00 3.16
461 462 8.964420 AAAAATGATACAATGACACTAAACGG 57.036 30.769 0.00 0.00 0.00 4.44
462 463 6.677781 AATGATACAATGACACTAAACGGG 57.322 37.500 0.00 0.00 0.00 5.28
520 521 9.638239 ATCAATGTGTTCAATATAACCACAAAC 57.362 29.630 0.00 0.00 30.13 2.93
528 529 9.705290 GTTCAATATAACCACAAACTTCCATTT 57.295 29.630 0.00 0.00 0.00 2.32
537 538 7.162082 ACCACAAACTTCCATTTTACAACAAA 58.838 30.769 0.00 0.00 0.00 2.83
538 539 7.661847 ACCACAAACTTCCATTTTACAACAAAA 59.338 29.630 0.00 0.00 0.00 2.44
539 540 8.672815 CCACAAACTTCCATTTTACAACAAAAT 58.327 29.630 0.00 0.00 0.00 1.82
599 601 8.597167 CCAAAGATTACCTCACCATCTATGATA 58.403 37.037 0.00 0.00 0.00 2.15
603 605 9.253832 AGATTACCTCACCATCTATGATAAGAG 57.746 37.037 0.00 0.00 0.00 2.85
608 610 7.515514 ACCTCACCATCTATGATAAGAGGAAAT 59.484 37.037 19.48 4.72 43.07 2.17
623 625 3.817647 GAGGAAATCATGCCTGGTCATAC 59.182 47.826 0.00 0.00 33.84 2.39
644 646 1.831736 GCTCTAACTGGGTAGAAGCCA 59.168 52.381 0.00 0.00 44.64 4.75
649 651 5.464069 TCTAACTGGGTAGAAGCCATCATA 58.536 41.667 0.00 0.00 45.81 2.15
663 665 5.574188 AGCCATCATAAAAAGGTCTCTGTT 58.426 37.500 0.00 0.00 0.00 3.16
683 685 5.446860 TGTTCTCCGTCCTCTACAAGATAT 58.553 41.667 0.00 0.00 0.00 1.63
714 717 9.553064 AAAGAGTCATAATGTACAGGAATGATC 57.447 33.333 16.22 14.25 0.00 2.92
773 778 6.759497 AAAAACACATCATCCCTAGTAAGC 57.241 37.500 0.00 0.00 0.00 3.09
786 791 3.118038 CCTAGTAAGCCATAGTGCCCAAA 60.118 47.826 0.00 0.00 0.00 3.28
849 854 6.691255 TTTGTCAATACCCTACTACCAGTT 57.309 37.500 0.00 0.00 0.00 3.16
862 867 6.475727 CCTACTACCAGTTGTCGAACATATTG 59.524 42.308 0.00 0.00 34.17 1.90
864 869 2.415168 ACCAGTTGTCGAACATATTGCG 59.585 45.455 0.00 0.00 34.17 4.85
909 914 5.183904 GGTTTGAAGCCACTTGAACTATGAT 59.816 40.000 0.00 0.00 0.00 2.45
978 984 3.129462 TCGTCATGTTGGCAAGAAACAAA 59.871 39.130 0.00 0.00 40.69 2.83
1005 1011 4.510571 ACTACCTTACCAAAACTATGGCG 58.489 43.478 0.00 0.00 44.75 5.69
1006 1012 3.428413 ACCTTACCAAAACTATGGCGT 57.572 42.857 0.00 0.00 44.75 5.68
1020 1026 1.890876 TGGCGTGTCAAACTATGCTT 58.109 45.000 0.00 0.00 0.00 3.91
1039 1045 3.437049 GCTTGTTAAGATCACACCTCCAC 59.563 47.826 0.00 0.00 0.00 4.02
1049 1055 6.542821 AGATCACACCTCCACTAAAAATCAA 58.457 36.000 0.00 0.00 0.00 2.57
1273 1280 9.449719 AAGAATAGTCATGGTTACTGGTTAAAG 57.550 33.333 0.00 0.00 0.00 1.85
1274 1281 8.047310 AGAATAGTCATGGTTACTGGTTAAAGG 58.953 37.037 0.00 0.00 0.00 3.11
1280 1287 8.674607 GTCATGGTTACTGGTTAAAGGATTAAG 58.325 37.037 0.00 0.00 31.81 1.85
1281 1288 7.338449 TCATGGTTACTGGTTAAAGGATTAAGC 59.662 37.037 0.00 4.12 45.42 3.09
1324 1331 9.996554 TCATTGGTTCTATAGTATATGGTTGTG 57.003 33.333 0.00 0.00 0.00 3.33
1325 1332 9.778741 CATTGGTTCTATAGTATATGGTTGTGT 57.221 33.333 0.00 0.00 0.00 3.72
1327 1334 9.826574 TTGGTTCTATAGTATATGGTTGTGTTC 57.173 33.333 0.00 0.00 0.00 3.18
1328 1335 8.983789 TGGTTCTATAGTATATGGTTGTGTTCA 58.016 33.333 0.00 0.00 0.00 3.18
1329 1336 9.257651 GGTTCTATAGTATATGGTTGTGTTCAC 57.742 37.037 0.00 0.00 0.00 3.18
1332 1339 8.857098 TCTATAGTATATGGTTGTGTTCACTCC 58.143 37.037 0.00 7.42 0.00 3.85
1333 1340 5.755409 AGTATATGGTTGTGTTCACTCCA 57.245 39.130 16.76 16.76 34.30 3.86
1334 1341 6.313519 AGTATATGGTTGTGTTCACTCCAT 57.686 37.500 23.48 23.48 39.72 3.41
1335 1342 7.432148 AGTATATGGTTGTGTTCACTCCATA 57.568 36.000 25.04 25.04 40.89 2.74
1336 1343 8.034313 AGTATATGGTTGTGTTCACTCCATAT 57.966 34.615 29.63 29.63 44.16 1.78
1337 1344 9.154632 AGTATATGGTTGTGTTCACTCCATATA 57.845 33.333 28.53 28.53 42.50 0.86
1338 1345 9.944376 GTATATGGTTGTGTTCACTCCATATAT 57.056 33.333 30.93 22.98 44.08 0.86
1339 1346 8.853077 ATATGGTTGTGTTCACTCCATATATG 57.147 34.615 28.07 5.68 42.50 1.78
1403 1411 4.519540 TTAAGCATGGGAAGCAACTTTC 57.480 40.909 0.00 0.00 0.00 2.62
1426 1434 6.973642 TCTTCCCTCTTTCATACCATTCAAT 58.026 36.000 0.00 0.00 0.00 2.57
1480 1488 3.567478 AGAAAGCCACAACAGAGACTT 57.433 42.857 0.00 0.00 0.00 3.01
1494 1502 2.027377 AGAGACTTGCCATGTGAGGAAG 60.027 50.000 0.00 0.00 0.00 3.46
1509 1517 4.069304 TGAGGAAGACATGGGTTTTAACG 58.931 43.478 0.00 0.00 0.00 3.18
1510 1518 4.202377 TGAGGAAGACATGGGTTTTAACGA 60.202 41.667 0.00 0.00 0.00 3.85
1556 1564 1.847999 CTGCGAAAAGTGCAAACAGTG 59.152 47.619 0.00 0.00 42.70 3.66
1565 1573 1.525077 GCAAACAGTGGACGGGTGA 60.525 57.895 0.00 0.00 0.00 4.02
1579 1587 1.553248 CGGGTGACATTGGAGGACTTA 59.447 52.381 0.00 0.00 0.00 2.24
1602 1610 0.390735 AAATAGCGGACGGGTGACAC 60.391 55.000 0.00 0.00 0.00 3.67
1603 1611 1.255667 AATAGCGGACGGGTGACACT 61.256 55.000 5.39 0.00 0.00 3.55
1604 1612 1.945354 ATAGCGGACGGGTGACACTG 61.945 60.000 5.39 1.22 0.00 3.66
1605 1613 4.295119 GCGGACGGGTGACACTGT 62.295 66.667 5.39 4.65 0.00 3.55
1606 1614 2.355837 CGGACGGGTGACACTGTG 60.356 66.667 6.19 6.19 0.00 3.66
1607 1615 2.030562 GGACGGGTGACACTGTGG 59.969 66.667 13.09 0.00 0.00 4.17
1626 2359 8.246180 CACTGTGGCATTAAAAGTTCTAATGAT 58.754 33.333 12.23 0.00 38.50 2.45
1705 2465 0.378962 TTTCTGTTGAAACCGCACGG 59.621 50.000 7.71 7.71 37.27 4.94
1756 2516 6.633234 GCTTCCAAATTATTCTTAGCGCTTAC 59.367 38.462 18.68 0.00 0.00 2.34
1781 2541 7.117812 ACGATGTCGACTGAAATTAGTTTTCAT 59.882 33.333 17.92 0.00 45.90 2.57
1863 2674 7.891183 ATCTATACACAAAGATTGCGGTATC 57.109 36.000 9.75 0.00 36.48 2.24
1865 2676 7.269316 TCTATACACAAAGATTGCGGTATCAA 58.731 34.615 9.75 0.00 36.48 2.57
1871 2682 7.066887 ACACAAAGATTGCGGTATCAAATCATA 59.933 33.333 2.25 0.00 0.00 2.15
1873 2684 8.077991 ACAAAGATTGCGGTATCAAATCATATG 58.922 33.333 0.00 0.00 0.00 1.78
1952 2763 5.011329 TCAAAGAGTTCTTACCACCGTACAT 59.989 40.000 0.00 0.00 34.61 2.29
2022 2833 2.905085 CTCTGGAGGCAGTGGATATGAT 59.095 50.000 0.00 0.00 0.00 2.45
2043 2854 1.484356 CCTTAACTTCGATACCCGCG 58.516 55.000 0.00 0.00 38.37 6.46
2178 2990 4.785511 TCAGACTGCTACTTCAAGTACC 57.214 45.455 0.00 0.00 0.00 3.34
2232 3044 7.668492 AGGATAAGCTAATAACTTTAGTCGGG 58.332 38.462 0.00 0.00 0.00 5.14
2352 3164 5.243981 CGCCATCAATATGATCTTCCTTCT 58.756 41.667 0.00 0.00 34.28 2.85
2355 3167 7.551974 CGCCATCAATATGATCTTCCTTCTTAT 59.448 37.037 0.00 0.00 34.28 1.73
2382 3194 6.313905 TGAAATTTCTTATCTCTTCCGCAGTC 59.686 38.462 18.64 0.00 0.00 3.51
2405 3217 9.901172 AGTCAATTTTACTATGGTAAGGGTTAG 57.099 33.333 1.70 0.00 38.86 2.34
2407 3219 9.895138 TCAATTTTACTATGGTAAGGGTTAGTC 57.105 33.333 1.70 0.00 38.86 2.59
2418 3230 9.936329 ATGGTAAGGGTTAGTCAATTTTATGAT 57.064 29.630 0.00 0.00 0.00 2.45
2419 3231 9.184523 TGGTAAGGGTTAGTCAATTTTATGATG 57.815 33.333 0.00 0.00 0.00 3.07
2420 3232 8.630037 GGTAAGGGTTAGTCAATTTTATGATGG 58.370 37.037 0.00 0.00 0.00 3.51
2421 3233 9.185680 GTAAGGGTTAGTCAATTTTATGATGGT 57.814 33.333 0.00 0.00 0.00 3.55
2423 3235 9.762381 AAGGGTTAGTCAATTTTATGATGGTAA 57.238 29.630 0.00 0.00 0.00 2.85
2424 3236 9.408648 AGGGTTAGTCAATTTTATGATGGTAAG 57.591 33.333 0.00 0.00 0.00 2.34
2425 3237 8.630037 GGGTTAGTCAATTTTATGATGGTAAGG 58.370 37.037 0.00 0.00 0.00 2.69
2426 3238 8.630037 GGTTAGTCAATTTTATGATGGTAAGGG 58.370 37.037 0.00 0.00 0.00 3.95
2427 3239 9.185680 GTTAGTCAATTTTATGATGGTAAGGGT 57.814 33.333 0.00 0.00 0.00 4.34
2428 3240 9.762381 TTAGTCAATTTTATGATGGTAAGGGTT 57.238 29.630 0.00 0.00 0.00 4.11
2430 3242 9.936329 AGTCAATTTTATGATGGTAAGGGTTAT 57.064 29.630 0.00 0.00 0.00 1.89
2467 3279 8.784043 GGTTATAGTTGTTTCACAGAAACTCAT 58.216 33.333 19.61 11.48 34.76 2.90
2489 3303 8.316497 TCATTTGACTCTCTCTCTCCATAAAT 57.684 34.615 0.00 0.00 0.00 1.40
2490 3304 8.766476 TCATTTGACTCTCTCTCTCCATAAATT 58.234 33.333 0.00 0.00 0.00 1.82
2499 3313 9.911788 TCTCTCTCTCCATAAATTATTTTTGCT 57.088 29.630 0.00 0.00 0.00 3.91
2518 3332 8.840833 TTTTGCTCTTGAAGGTTTTAAAGTTT 57.159 26.923 0.00 0.00 0.00 2.66
2532 3346 9.051679 GGTTTTAAAGTTTTGCATATTTCCACT 57.948 29.630 0.00 0.00 0.00 4.00
2556 3370 8.697292 ACTAGACTCCTATGAACCATTACTTTC 58.303 37.037 0.00 0.00 0.00 2.62
2568 3382 9.161629 TGAACCATTACTTTCATAGTACATGTG 57.838 33.333 9.11 0.00 39.05 3.21
2589 3403 2.971901 AGTTTCCCTTCGGTTCCATT 57.028 45.000 0.00 0.00 0.00 3.16
2669 3483 3.243301 GCTATGGCACCTCATCACAATTG 60.243 47.826 3.24 3.24 38.54 2.32
2676 3490 3.695556 CACCTCATCACAATTGCCACATA 59.304 43.478 5.05 0.00 0.00 2.29
2696 3510 9.841295 CCACATAACCCTTATTAGCTTTAGTAA 57.159 33.333 0.00 0.00 0.00 2.24
2732 3546 1.683917 CCTCCTCCAGTCCATACTTCG 59.316 57.143 0.00 0.00 31.97 3.79
2739 3553 2.363680 CCAGTCCATACTTCGCATCTCT 59.636 50.000 0.00 0.00 31.97 3.10
2851 3667 4.202182 TGTCGTAGTTGTTTGCTCTACCTT 60.202 41.667 0.00 0.00 32.91 3.50
2956 3773 5.657474 GTTGAAGGATTGAATGCATGTCAT 58.343 37.500 0.00 0.00 36.87 3.06
2960 3777 6.377712 TGAAGGATTGAATGCATGTCATACAA 59.622 34.615 0.00 1.37 34.33 2.41
2963 3780 6.548251 AGGATTGAATGCATGTCATACAATCA 59.452 34.615 23.87 12.26 41.78 2.57
2984 3801 9.499585 CAATCATTTACTTCATGTTGCTTAGAG 57.500 33.333 0.00 0.00 0.00 2.43
3018 3835 7.912056 TCTAGAAATATCCTATGCAACATGC 57.088 36.000 0.00 0.00 45.29 4.06
3027 3844 4.101790 GCAACATGCGGGGTGTCG 62.102 66.667 0.00 0.00 31.71 4.35
3034 3851 1.945354 ATGCGGGGTGTCGTCTAGTG 61.945 60.000 0.00 0.00 0.00 2.74
3037 3854 1.386533 CGGGGTGTCGTCTAGTGTAT 58.613 55.000 0.00 0.00 0.00 2.29
3044 3861 7.119699 CGGGGTGTCGTCTAGTGTATATAATTA 59.880 40.741 0.00 0.00 0.00 1.40
3168 5490 8.877864 AAGGGTTCATAAATGATTACACTTGA 57.122 30.769 10.19 0.00 38.90 3.02
3219 5541 8.791327 ATTTTCCATTGATTTACATTCAACCC 57.209 30.769 0.00 0.00 36.02 4.11
3226 5548 1.798283 TTACATTCAACCCGGTCACG 58.202 50.000 0.00 0.00 40.55 4.35
3232 5554 2.875087 TCAACCCGGTCACGTATATG 57.125 50.000 0.00 0.00 38.78 1.78
3269 5591 9.513906 TCAGTCTGACATTCTCTTCTATATAGG 57.486 37.037 10.88 0.00 0.00 2.57
3301 5623 2.380064 TTGGTGCAAAGAGGATTGGT 57.620 45.000 0.00 0.00 0.00 3.67
3310 5632 4.072131 CAAAGAGGATTGGTTTCTTCGGA 58.928 43.478 0.00 0.00 31.16 4.55
3537 5859 9.378551 TGATTTTTATGGTGAGTGTACACTATC 57.621 33.333 27.98 20.82 42.66 2.08
3541 5863 1.761198 GGTGAGTGTACACTATCCCCC 59.239 57.143 27.98 17.96 42.66 5.40
3542 5864 1.407979 GTGAGTGTACACTATCCCCCG 59.592 57.143 27.98 0.00 42.66 5.73
3657 5980 3.904339 ACTACAACAACACTGGATCCTCT 59.096 43.478 14.23 0.00 0.00 3.69
3671 5994 4.474651 TGGATCCTCTACATTCACATTGGT 59.525 41.667 14.23 0.00 0.00 3.67
3692 6015 4.041723 GTCGGGAAAACAACTTTCACATG 58.958 43.478 0.00 0.00 46.30 3.21
3696 6019 4.340950 GGGAAAACAACTTTCACATGGAGA 59.659 41.667 0.00 0.00 45.43 3.71
3716 6039 3.579151 AGAAAGTCAGTAGGTGAAGGGTC 59.421 47.826 0.00 0.00 36.74 4.46
3738 6061 2.343758 CGACCGGCCCATCCTATG 59.656 66.667 0.00 0.00 0.00 2.23
3741 6064 2.348998 CCGGCCCATCCTATGAGC 59.651 66.667 0.00 0.00 32.69 4.26
3742 6065 2.519622 CCGGCCCATCCTATGAGCA 61.520 63.158 0.00 0.00 35.49 4.26
3748 6071 2.620585 GCCCATCCTATGAGCAAAAGTC 59.379 50.000 0.00 0.00 33.79 3.01
3749 6072 3.217626 CCCATCCTATGAGCAAAAGTCC 58.782 50.000 0.00 0.00 0.00 3.85
3751 6074 3.629398 CCATCCTATGAGCAAAAGTCCAC 59.371 47.826 0.00 0.00 0.00 4.02
3752 6075 3.350219 TCCTATGAGCAAAAGTCCACC 57.650 47.619 0.00 0.00 0.00 4.61
3775 6098 2.195741 GAAAGGCCTTTCCTAACCGT 57.804 50.000 38.01 13.35 46.94 4.83
3782 6105 2.095372 GCCTTTCCTAACCGTCATTTCG 59.905 50.000 0.00 0.00 0.00 3.46
3788 6111 5.895636 TCCTAACCGTCATTTCGTTACTA 57.104 39.130 0.00 0.00 0.00 1.82
3798 6121 4.330620 TCATTTCGTTACTAACCGGCAATC 59.669 41.667 0.00 0.00 0.00 2.67
3814 6137 4.165779 GGCAATCTTTCATTGGTGTAACG 58.834 43.478 0.00 0.00 38.12 3.18
3822 6145 2.106857 TCATTGGTGTAACGGGTTTCCT 59.893 45.455 0.00 0.00 38.12 3.36
3848 6171 5.010617 ACCAATATATTTTTGGCGATGGACC 59.989 40.000 14.10 0.00 46.21 4.46
3858 6181 2.238646 TGGCGATGGACCTTAGTTTCAT 59.761 45.455 0.00 0.00 0.00 2.57
3867 6191 6.303054 TGGACCTTAGTTTCATCATTTGTCA 58.697 36.000 0.00 0.00 0.00 3.58
3869 6193 7.084486 GGACCTTAGTTTCATCATTTGTCAAC 58.916 38.462 0.00 0.00 0.00 3.18
3874 6198 4.821805 AGTTTCATCATTTGTCAACCGACT 59.178 37.500 0.00 0.00 43.06 4.18
3875 6199 4.747540 TTCATCATTTGTCAACCGACTG 57.252 40.909 0.00 0.00 43.06 3.51
3888 6212 1.201647 ACCGACTGTCCGACAACATAG 59.798 52.381 2.19 0.00 0.00 2.23
3895 6219 0.981183 TCCGACAACATAGCCTTGGT 59.019 50.000 0.00 0.00 0.00 3.67
3896 6220 1.349688 TCCGACAACATAGCCTTGGTT 59.650 47.619 0.00 0.00 0.00 3.67
3897 6221 2.159382 CCGACAACATAGCCTTGGTTT 58.841 47.619 0.00 0.00 0.00 3.27
3933 6257 5.560722 TGGTCTAGTTGTGAGATTTTCCA 57.439 39.130 0.00 0.00 0.00 3.53
3934 6258 5.935945 TGGTCTAGTTGTGAGATTTTCCAA 58.064 37.500 0.00 0.00 0.00 3.53
3937 6261 5.003804 TCTAGTTGTGAGATTTTCCAAGGC 58.996 41.667 0.00 0.00 0.00 4.35
3942 6266 3.007506 TGTGAGATTTTCCAAGGCGACTA 59.992 43.478 0.00 0.00 42.68 2.59
3975 6299 1.866601 GTCTTTGCCAACCAACATTGC 59.133 47.619 0.00 0.00 31.97 3.56
3981 6307 1.006337 CAACCAACATTGCCCCACG 60.006 57.895 0.00 0.00 0.00 4.94
4047 6373 0.599558 CACTGACCAAGCAACCATGG 59.400 55.000 11.19 11.19 42.60 3.66
4054 6380 4.141528 TGACCAAGCAACCATGGAATTTTT 60.142 37.500 21.47 0.00 39.12 1.94
4055 6381 5.070981 TGACCAAGCAACCATGGAATTTTTA 59.929 36.000 21.47 0.00 39.12 1.52
4056 6382 6.125589 ACCAAGCAACCATGGAATTTTTAT 57.874 33.333 21.47 0.00 39.12 1.40
4057 6383 7.038729 TGACCAAGCAACCATGGAATTTTTATA 60.039 33.333 21.47 0.00 39.12 0.98
4059 6385 6.538381 CCAAGCAACCATGGAATTTTTATACC 59.462 38.462 21.47 0.00 39.12 2.73
4060 6386 6.865834 AGCAACCATGGAATTTTTATACCA 57.134 33.333 21.47 0.00 36.83 3.25
4068 6395 9.369904 CCATGGAATTTTTATACCAAAAGAGTG 57.630 33.333 5.56 0.00 36.00 3.51
4120 6447 4.158764 TCCAAAATATTAAGCCACAACCGG 59.841 41.667 0.00 0.00 0.00 5.28
4178 6518 6.003326 TGTTCATCTGTTCACCACATACATT 58.997 36.000 0.00 0.00 33.76 2.71
4219 6559 3.640498 TCAAAAGGTGCATGTCCAATGAA 59.360 39.130 10.70 0.00 0.00 2.57
4288 6628 1.395826 GGGTAGCTCCTCATGCTCGT 61.396 60.000 0.00 0.00 41.46 4.18
4292 6632 1.028905 AGCTCCTCATGCTCGTAGAC 58.971 55.000 0.00 0.00 35.67 2.59
4303 6643 5.300792 TCATGCTCGTAGACCATAATACACA 59.699 40.000 0.00 0.00 30.01 3.72
4304 6644 4.928601 TGCTCGTAGACCATAATACACAC 58.071 43.478 0.00 0.00 0.00 3.82
4323 6663 3.253188 ACACCACATTCAATCTTGTTCCG 59.747 43.478 0.00 0.00 0.00 4.30
4328 6668 4.917415 CACATTCAATCTTGTTCCGGTTTC 59.083 41.667 0.00 0.00 0.00 2.78
4334 6674 2.582052 TCTTGTTCCGGTTTCTGCATT 58.418 42.857 0.00 0.00 0.00 3.56
4349 6689 8.125448 GGTTTCTGCATTATGAAGACACTATTC 58.875 37.037 16.40 0.17 34.05 1.75
4431 6771 3.118482 AGCACATATGTTGCACTAGAGCT 60.118 43.478 23.27 15.65 34.99 4.09
4439 6779 2.857152 GTTGCACTAGAGCTCTCAATCG 59.143 50.000 22.17 6.84 34.99 3.34
4451 6791 4.023279 AGCTCTCAATCGCATCTAGTACAG 60.023 45.833 0.00 0.00 0.00 2.74
4469 6809 1.066858 CAGCGCTACAAAAGAGGGAGA 60.067 52.381 10.99 0.00 0.00 3.71
4474 6814 3.369471 CGCTACAAAAGAGGGAGAATGGA 60.369 47.826 0.00 0.00 0.00 3.41
4475 6815 4.589908 GCTACAAAAGAGGGAGAATGGAA 58.410 43.478 0.00 0.00 0.00 3.53
4476 6816 4.637977 GCTACAAAAGAGGGAGAATGGAAG 59.362 45.833 0.00 0.00 0.00 3.46
4477 6817 5.571658 GCTACAAAAGAGGGAGAATGGAAGA 60.572 44.000 0.00 0.00 0.00 2.87
4478 6818 5.527026 ACAAAAGAGGGAGAATGGAAGAT 57.473 39.130 0.00 0.00 0.00 2.40
4479 6819 5.259632 ACAAAAGAGGGAGAATGGAAGATG 58.740 41.667 0.00 0.00 0.00 2.90
4480 6820 5.014544 ACAAAAGAGGGAGAATGGAAGATGA 59.985 40.000 0.00 0.00 0.00 2.92
4481 6821 5.786121 AAAGAGGGAGAATGGAAGATGAA 57.214 39.130 0.00 0.00 0.00 2.57
4482 6822 4.769345 AGAGGGAGAATGGAAGATGAAC 57.231 45.455 0.00 0.00 0.00 3.18
4483 6823 4.107072 AGAGGGAGAATGGAAGATGAACA 58.893 43.478 0.00 0.00 0.00 3.18
4484 6824 4.537688 AGAGGGAGAATGGAAGATGAACAA 59.462 41.667 0.00 0.00 0.00 2.83
4485 6825 5.014544 AGAGGGAGAATGGAAGATGAACAAA 59.985 40.000 0.00 0.00 0.00 2.83
4486 6826 5.835582 AGGGAGAATGGAAGATGAACAAAT 58.164 37.500 0.00 0.00 0.00 2.32
4487 6827 6.973642 AGGGAGAATGGAAGATGAACAAATA 58.026 36.000 0.00 0.00 0.00 1.40
4488 6828 6.830838 AGGGAGAATGGAAGATGAACAAATAC 59.169 38.462 0.00 0.00 0.00 1.89
4489 6829 6.830838 GGGAGAATGGAAGATGAACAAATACT 59.169 38.462 0.00 0.00 0.00 2.12
4490 6830 7.012799 GGGAGAATGGAAGATGAACAAATACTC 59.987 40.741 0.00 0.00 0.00 2.59
4491 6831 7.554118 GGAGAATGGAAGATGAACAAATACTCA 59.446 37.037 0.00 0.00 0.00 3.41
4492 6832 9.118300 GAGAATGGAAGATGAACAAATACTCAT 57.882 33.333 0.00 0.00 34.96 2.90
4493 6833 9.471702 AGAATGGAAGATGAACAAATACTCATT 57.528 29.630 0.00 0.00 32.40 2.57
4494 6834 9.512435 GAATGGAAGATGAACAAATACTCATTG 57.488 33.333 0.00 0.00 32.40 2.82
4495 6835 8.585471 ATGGAAGATGAACAAATACTCATTGT 57.415 30.769 0.00 0.00 42.56 2.71
4496 6836 8.044060 TGGAAGATGAACAAATACTCATTGTC 57.956 34.615 0.00 0.00 39.98 3.18
4497 6837 7.665145 TGGAAGATGAACAAATACTCATTGTCA 59.335 33.333 0.00 0.00 39.98 3.58
4498 6838 8.514594 GGAAGATGAACAAATACTCATTGTCAA 58.485 33.333 0.00 0.00 39.98 3.18
4499 6839 9.897744 GAAGATGAACAAATACTCATTGTCAAA 57.102 29.630 0.00 0.00 39.98 2.69
4501 6841 9.903682 AGATGAACAAATACTCATTGTCAAAAG 57.096 29.630 0.00 0.00 39.98 2.27
4502 6842 9.897744 GATGAACAAATACTCATTGTCAAAAGA 57.102 29.630 5.58 0.00 39.98 2.52
4554 6897 8.313292 AGATCAAGAATGGTCTCTATTGCTATC 58.687 37.037 0.00 0.00 43.75 2.08
4555 6898 7.365497 TCAAGAATGGTCTCTATTGCTATCA 57.635 36.000 0.00 0.00 30.70 2.15
4581 6924 4.013728 ACACAAAGCAAGTCAAACACCTA 58.986 39.130 0.00 0.00 0.00 3.08
4587 6934 7.094118 ACAAAGCAAGTCAAACACCTAGTAAAA 60.094 33.333 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.817765 TGGTCCATCATGAAAAGTAGTTTC 57.182 37.500 0.00 0.00 45.13 2.78
41 42 7.595819 TTTGGTCCATCATGAAAAGTAGTTT 57.404 32.000 0.00 0.00 0.00 2.66
42 43 7.781324 ATTTGGTCCATCATGAAAAGTAGTT 57.219 32.000 0.00 0.00 0.00 2.24
43 44 8.877864 TTATTTGGTCCATCATGAAAAGTAGT 57.122 30.769 0.00 0.00 0.00 2.73
90 91 8.977412 ACCGGGTTTTCAGAAAAATATATCAAT 58.023 29.630 10.00 0.00 36.77 2.57
91 92 8.356000 ACCGGGTTTTCAGAAAAATATATCAA 57.644 30.769 10.00 0.00 36.77 2.57
92 93 7.612244 TGACCGGGTTTTCAGAAAAATATATCA 59.388 33.333 10.00 8.90 36.77 2.15
93 94 7.992008 TGACCGGGTTTTCAGAAAAATATATC 58.008 34.615 10.00 6.68 36.77 1.63
94 95 7.948034 TGACCGGGTTTTCAGAAAAATATAT 57.052 32.000 10.00 0.00 36.77 0.86
95 96 7.762588 TTGACCGGGTTTTCAGAAAAATATA 57.237 32.000 10.00 0.00 36.77 0.86
96 97 6.658188 TTGACCGGGTTTTCAGAAAAATAT 57.342 33.333 10.00 0.00 36.77 1.28
97 98 6.127423 TGTTTGACCGGGTTTTCAGAAAAATA 60.127 34.615 10.00 0.00 36.77 1.40
98 99 5.113383 GTTTGACCGGGTTTTCAGAAAAAT 58.887 37.500 10.00 0.00 36.77 1.82
99 100 4.021368 TGTTTGACCGGGTTTTCAGAAAAA 60.021 37.500 10.00 0.00 31.13 1.94
100 101 3.510360 TGTTTGACCGGGTTTTCAGAAAA 59.490 39.130 6.32 4.06 0.00 2.29
101 102 3.090037 TGTTTGACCGGGTTTTCAGAAA 58.910 40.909 6.32 0.00 0.00 2.52
102 103 2.724454 TGTTTGACCGGGTTTTCAGAA 58.276 42.857 6.32 0.00 0.00 3.02
103 104 2.421751 TGTTTGACCGGGTTTTCAGA 57.578 45.000 6.32 0.00 0.00 3.27
104 105 2.862140 GCATGTTTGACCGGGTTTTCAG 60.862 50.000 6.32 0.00 0.00 3.02
105 106 1.067821 GCATGTTTGACCGGGTTTTCA 59.932 47.619 6.32 0.00 0.00 2.69
106 107 1.067821 TGCATGTTTGACCGGGTTTTC 59.932 47.619 6.32 0.00 0.00 2.29
107 108 1.115467 TGCATGTTTGACCGGGTTTT 58.885 45.000 6.32 0.00 0.00 2.43
108 109 0.387565 GTGCATGTTTGACCGGGTTT 59.612 50.000 6.32 0.00 0.00 3.27
109 110 0.467290 AGTGCATGTTTGACCGGGTT 60.467 50.000 6.32 0.00 0.00 4.11
110 111 0.889186 GAGTGCATGTTTGACCGGGT 60.889 55.000 6.32 0.00 0.00 5.28
111 112 1.875963 GAGTGCATGTTTGACCGGG 59.124 57.895 6.32 0.00 0.00 5.73
112 113 1.227999 ACGAGTGCATGTTTGACCGG 61.228 55.000 0.00 0.00 0.00 5.28
113 114 0.586319 AACGAGTGCATGTTTGACCG 59.414 50.000 0.00 0.00 0.00 4.79
114 115 2.774439 AAACGAGTGCATGTTTGACC 57.226 45.000 12.15 0.00 36.96 4.02
118 119 4.370364 AAAGTCAAACGAGTGCATGTTT 57.630 36.364 8.36 8.36 38.76 2.83
119 120 4.104776 CAAAAGTCAAACGAGTGCATGTT 58.895 39.130 0.00 0.00 0.00 2.71
120 121 3.376859 TCAAAAGTCAAACGAGTGCATGT 59.623 39.130 0.00 0.00 0.00 3.21
121 122 3.725740 GTCAAAAGTCAAACGAGTGCATG 59.274 43.478 0.00 0.00 0.00 4.06
122 123 3.376859 TGTCAAAAGTCAAACGAGTGCAT 59.623 39.130 0.00 0.00 0.00 3.96
123 124 2.744741 TGTCAAAAGTCAAACGAGTGCA 59.255 40.909 0.00 0.00 0.00 4.57
124 125 3.398954 TGTCAAAAGTCAAACGAGTGC 57.601 42.857 0.00 0.00 0.00 4.40
125 126 5.627367 TGTTTTGTCAAAAGTCAAACGAGTG 59.373 36.000 11.03 0.00 34.05 3.51
126 127 5.764131 TGTTTTGTCAAAAGTCAAACGAGT 58.236 33.333 11.03 0.00 34.05 4.18
127 128 6.683090 TTGTTTTGTCAAAAGTCAAACGAG 57.317 33.333 11.03 0.00 34.05 4.18
128 129 7.644986 ATTTGTTTTGTCAAAAGTCAAACGA 57.355 28.000 20.44 5.56 40.05 3.85
129 130 8.428536 TGTATTTGTTTTGTCAAAAGTCAAACG 58.571 29.630 20.44 0.00 40.05 3.60
130 131 9.523730 GTGTATTTGTTTTGTCAAAAGTCAAAC 57.476 29.630 20.44 14.09 40.05 2.93
131 132 8.713271 GGTGTATTTGTTTTGTCAAAAGTCAAA 58.287 29.630 20.36 20.36 40.05 2.69
132 133 8.091449 AGGTGTATTTGTTTTGTCAAAAGTCAA 58.909 29.630 11.03 9.87 40.05 3.18
133 134 7.607250 AGGTGTATTTGTTTTGTCAAAAGTCA 58.393 30.769 11.03 4.33 40.05 3.41
134 135 8.474006 AAGGTGTATTTGTTTTGTCAAAAGTC 57.526 30.769 11.03 1.75 40.05 3.01
151 152 8.881262 CCCTCTGTTCCTTTATATAAGGTGTAT 58.119 37.037 4.13 0.00 38.55 2.29
152 153 8.069356 TCCCTCTGTTCCTTTATATAAGGTGTA 58.931 37.037 4.13 0.00 38.55 2.90
153 154 6.906901 TCCCTCTGTTCCTTTATATAAGGTGT 59.093 38.462 4.13 0.00 38.55 4.16
154 155 7.071321 ACTCCCTCTGTTCCTTTATATAAGGTG 59.929 40.741 4.13 0.00 38.55 4.00
155 156 7.140304 ACTCCCTCTGTTCCTTTATATAAGGT 58.860 38.462 4.13 0.00 38.55 3.50
156 157 7.619512 ACTCCCTCTGTTCCTTTATATAAGG 57.380 40.000 0.00 0.00 38.78 2.69
160 161 9.004231 ACAAATACTCCCTCTGTTCCTTTATAT 57.996 33.333 0.00 0.00 0.00 0.86
161 162 8.388656 ACAAATACTCCCTCTGTTCCTTTATA 57.611 34.615 0.00 0.00 0.00 0.98
162 163 7.272144 ACAAATACTCCCTCTGTTCCTTTAT 57.728 36.000 0.00 0.00 0.00 1.40
163 164 6.697641 ACAAATACTCCCTCTGTTCCTTTA 57.302 37.500 0.00 0.00 0.00 1.85
164 165 5.584551 ACAAATACTCCCTCTGTTCCTTT 57.415 39.130 0.00 0.00 0.00 3.11
165 166 5.584551 AACAAATACTCCCTCTGTTCCTT 57.415 39.130 0.00 0.00 0.00 3.36
166 167 5.584551 AAACAAATACTCCCTCTGTTCCT 57.415 39.130 0.00 0.00 30.16 3.36
167 168 7.754851 TTTAAACAAATACTCCCTCTGTTCC 57.245 36.000 0.00 0.00 30.16 3.62
212 213 6.849085 AATAATGTGTGGGCATTCAAGTAA 57.151 33.333 0.00 0.00 39.50 2.24
213 214 7.014134 CCATAATAATGTGTGGGCATTCAAGTA 59.986 37.037 0.00 0.00 39.50 2.24
277 278 3.754323 CACAAGGTGCCTCGGTTTAATTA 59.246 43.478 0.00 0.00 0.00 1.40
299 300 3.427233 GGCAAGAGAGTTCACATCATTGC 60.427 47.826 0.00 0.00 39.23 3.56
436 437 8.026607 CCCGTTTAGTGTCATTGTATCATTTTT 58.973 33.333 0.00 0.00 0.00 1.94
449 450 4.783667 GGCACCCGTTTAGTGTCA 57.216 55.556 0.00 0.00 39.66 3.58
462 463 0.532196 GTTATGTAGAGGCCGGGCAC 60.532 60.000 31.59 24.79 0.00 5.01
475 476 5.900865 TGATTGTGTGCATCATGTTATGT 57.099 34.783 0.00 0.00 0.00 2.29
508 509 9.968870 GTTGTAAAATGGAAGTTTGTGGTTATA 57.031 29.630 0.00 0.00 33.75 0.98
599 601 2.309755 TGACCAGGCATGATTTCCTCTT 59.690 45.455 0.00 0.00 0.00 2.85
603 605 2.549754 CGTATGACCAGGCATGATTTCC 59.450 50.000 0.00 0.00 0.00 3.13
608 610 0.104855 GAGCGTATGACCAGGCATGA 59.895 55.000 0.00 0.00 0.00 3.07
623 625 1.202428 GGCTTCTACCCAGTTAGAGCG 60.202 57.143 0.00 0.00 0.00 5.03
644 646 6.109359 CGGAGAACAGAGACCTTTTTATGAT 58.891 40.000 0.00 0.00 0.00 2.45
649 651 3.494573 GGACGGAGAACAGAGACCTTTTT 60.495 47.826 0.00 0.00 0.00 1.94
663 665 6.839454 ACTTATATCTTGTAGAGGACGGAGA 58.161 40.000 0.00 0.00 0.00 3.71
698 700 7.437713 TCTAGGTTGATCATTCCTGTACATT 57.562 36.000 22.42 4.96 33.34 2.71
759 764 3.578716 GCACTATGGCTTACTAGGGATGA 59.421 47.826 0.00 0.00 0.00 2.92
773 778 5.291971 GCAATCTTATTTTGGGCACTATGG 58.708 41.667 0.00 0.00 0.00 2.74
786 791 3.737559 TGTGAGGGTGGCAATCTTATT 57.262 42.857 0.00 0.00 0.00 1.40
825 830 6.691255 ACTGGTAGTAGGGTATTGACAAAA 57.309 37.500 0.00 0.00 0.00 2.44
830 835 4.400251 CGACAACTGGTAGTAGGGTATTGA 59.600 45.833 0.00 0.00 0.00 2.57
845 850 2.430956 GCGCAATATGTTCGACAACTG 58.569 47.619 0.30 0.00 33.17 3.16
849 854 1.346879 GCGCGCAATATGTTCGACA 59.653 52.632 29.10 0.00 0.00 4.35
909 914 0.181114 AGTTTGCTCTGCAGTGTGGA 59.819 50.000 14.67 3.96 40.61 4.02
951 957 1.462283 CTTGCCAACATGACGAGACTG 59.538 52.381 0.00 0.00 0.00 3.51
978 984 8.963725 GCCATAGTTTTGGTAAGGTAGTAAAAT 58.036 33.333 0.00 0.00 39.11 1.82
996 1002 3.374058 GCATAGTTTGACACGCCATAGTT 59.626 43.478 0.00 0.00 0.00 2.24
997 1003 2.936498 GCATAGTTTGACACGCCATAGT 59.064 45.455 0.00 0.00 0.00 2.12
998 1004 3.198068 AGCATAGTTTGACACGCCATAG 58.802 45.455 0.00 0.00 0.00 2.23
1000 1006 2.113860 AGCATAGTTTGACACGCCAT 57.886 45.000 0.00 0.00 0.00 4.40
1001 1007 1.535028 CAAGCATAGTTTGACACGCCA 59.465 47.619 0.00 0.00 0.00 5.69
1002 1008 1.535462 ACAAGCATAGTTTGACACGCC 59.465 47.619 0.61 0.00 0.00 5.68
1005 1011 7.746475 GTGATCTTAACAAGCATAGTTTGACAC 59.254 37.037 0.61 0.00 0.00 3.67
1006 1012 7.443879 TGTGATCTTAACAAGCATAGTTTGACA 59.556 33.333 0.61 0.00 0.00 3.58
1020 1026 6.428083 TTTAGTGGAGGTGTGATCTTAACA 57.572 37.500 0.00 0.00 0.00 2.41
1065 1071 5.130477 AGTGGAAACTCAAACTACCTCTTCA 59.870 40.000 0.00 0.00 0.00 3.02
1097 1104 3.296322 TTTTTGCAAGTATTCCTGCCG 57.704 42.857 0.00 0.00 0.00 5.69
1127 1134 9.853177 AGTTCAAGAATATATTTTTCCCGATCT 57.147 29.630 0.00 0.00 0.00 2.75
1259 1266 6.657966 ACAGCTTAATCCTTTAACCAGTAACC 59.342 38.462 0.00 0.00 0.00 2.85
1273 1280 8.986477 ATGAAATGTTTTGTACAGCTTAATCC 57.014 30.769 0.00 0.00 40.83 3.01
1274 1281 9.624697 TGATGAAATGTTTTGTACAGCTTAATC 57.375 29.630 0.00 0.00 40.83 1.75
1280 1287 6.646240 ACCAATGATGAAATGTTTTGTACAGC 59.354 34.615 0.00 0.00 40.83 4.40
1281 1288 8.592105 AACCAATGATGAAATGTTTTGTACAG 57.408 30.769 0.00 0.00 40.83 2.74
1310 1317 6.860790 TGGAGTGAACACAACCATATACTA 57.139 37.500 15.34 0.00 36.00 1.82
1332 1339 8.442632 AATCAGAGTGAACACAACCATATATG 57.557 34.615 5.68 5.68 0.00 1.78
1333 1340 8.896744 CAAATCAGAGTGAACACAACCATATAT 58.103 33.333 7.68 0.00 0.00 0.86
1334 1341 7.882791 ACAAATCAGAGTGAACACAACCATATA 59.117 33.333 7.68 0.00 0.00 0.86
1335 1342 6.716628 ACAAATCAGAGTGAACACAACCATAT 59.283 34.615 7.68 0.00 0.00 1.78
1336 1343 6.061441 ACAAATCAGAGTGAACACAACCATA 58.939 36.000 7.68 0.00 0.00 2.74
1337 1344 4.889409 ACAAATCAGAGTGAACACAACCAT 59.111 37.500 7.68 0.00 0.00 3.55
1338 1345 4.269183 ACAAATCAGAGTGAACACAACCA 58.731 39.130 7.68 0.00 0.00 3.67
1339 1346 4.900635 ACAAATCAGAGTGAACACAACC 57.099 40.909 7.68 0.00 0.00 3.77
1403 1411 7.651027 AATTGAATGGTATGAAAGAGGGAAG 57.349 36.000 0.00 0.00 0.00 3.46
1456 1464 3.743396 GTCTCTGTTGTGGCTTTCTACTG 59.257 47.826 0.00 0.00 0.00 2.74
1459 1467 4.380531 CAAGTCTCTGTTGTGGCTTTCTA 58.619 43.478 0.00 0.00 30.38 2.10
1468 1476 2.158769 TCACATGGCAAGTCTCTGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
1480 1488 2.118313 CATGTCTTCCTCACATGGCA 57.882 50.000 0.00 0.00 45.06 4.92
1494 1502 3.985279 GGCTTTTCGTTAAAACCCATGTC 59.015 43.478 0.00 0.00 32.61 3.06
1500 1508 3.720949 AGGTGGCTTTTCGTTAAAACC 57.279 42.857 0.00 0.00 31.37 3.27
1536 1544 1.847999 CACTGTTTGCACTTTTCGCAG 59.152 47.619 0.00 0.00 41.18 5.18
1540 1548 2.450160 CGTCCACTGTTTGCACTTTTC 58.550 47.619 0.00 0.00 0.00 2.29
1556 1564 1.078426 CCTCCAATGTCACCCGTCC 60.078 63.158 0.00 0.00 0.00 4.79
1559 1567 0.324943 AAGTCCTCCAATGTCACCCG 59.675 55.000 0.00 0.00 0.00 5.28
1586 1594 2.282674 AGTGTCACCCGTCCGCTA 60.283 61.111 0.00 0.00 0.00 4.26
1587 1595 3.991051 CAGTGTCACCCGTCCGCT 61.991 66.667 0.00 0.00 0.00 5.52
1588 1596 4.295119 ACAGTGTCACCCGTCCGC 62.295 66.667 0.00 0.00 0.00 5.54
1589 1597 2.355837 CACAGTGTCACCCGTCCG 60.356 66.667 0.00 0.00 0.00 4.79
1590 1598 2.030562 CCACAGTGTCACCCGTCC 59.969 66.667 0.00 0.00 0.00 4.79
1591 1599 2.665185 GCCACAGTGTCACCCGTC 60.665 66.667 0.00 0.00 0.00 4.79
1592 1600 2.337879 AATGCCACAGTGTCACCCGT 62.338 55.000 0.00 0.00 0.00 5.28
1593 1601 0.321210 TAATGCCACAGTGTCACCCG 60.321 55.000 0.00 0.00 0.00 5.28
1594 1602 1.904287 TTAATGCCACAGTGTCACCC 58.096 50.000 0.00 0.00 0.00 4.61
1595 1603 3.317993 ACTTTTAATGCCACAGTGTCACC 59.682 43.478 0.00 0.00 0.00 4.02
1596 1604 4.568152 ACTTTTAATGCCACAGTGTCAC 57.432 40.909 0.00 0.00 0.00 3.67
1598 1606 5.438761 AGAACTTTTAATGCCACAGTGTC 57.561 39.130 0.00 0.00 0.00 3.67
1679 2439 4.142271 TGCGGTTTCAACAGAAACTTCAAT 60.142 37.500 17.45 0.00 46.47 2.57
1700 2460 0.241481 TATTTTGAAACGGGCCGTGC 59.759 50.000 34.87 26.85 39.99 5.34
1731 2491 5.175090 AGCGCTAAGAATAATTTGGAAGC 57.825 39.130 8.99 0.00 0.00 3.86
1749 2509 0.522705 TCAGTCGACATCGTAAGCGC 60.523 55.000 19.50 0.00 40.80 5.92
1750 2510 1.891178 TTCAGTCGACATCGTAAGCG 58.109 50.000 19.50 0.00 40.80 4.68
1856 2667 8.075574 TGATGTTTTCATATGATTTGATACCGC 58.924 33.333 6.17 0.00 41.05 5.68
1900 2711 8.267894 TCCTAACTTAGAAGCTGCTTAATCAAT 58.732 33.333 15.95 3.85 0.00 2.57
1909 2720 4.457834 TGACTCCTAACTTAGAAGCTGC 57.542 45.455 0.00 0.00 0.00 5.25
1920 2731 6.645827 GTGGTAAGAACTCTTTGACTCCTAAC 59.354 42.308 0.00 0.00 37.40 2.34
1952 2763 7.099764 GTCACTTAGTTCAAGATCATCTCCAA 58.900 38.462 0.00 0.00 37.71 3.53
2022 2833 1.410153 GCGGGTATCGAAGTTAAGGGA 59.590 52.381 0.00 0.00 42.43 4.20
2178 2990 5.708948 TCAAGAAATAATTCAAGTTGCCCG 58.291 37.500 0.00 0.00 38.06 6.13
2211 3023 6.041296 CCTCCCCGACTAAAGTTATTAGCTTA 59.959 42.308 0.00 0.00 0.00 3.09
2232 3044 2.182030 CGTGTCGCTTCCTCCTCC 59.818 66.667 0.00 0.00 0.00 4.30
2321 3133 2.153645 CATATTGATGGCGCCTTAGCA 58.846 47.619 29.70 15.13 39.83 3.49
2325 3137 3.430042 AGATCATATTGATGGCGCCTT 57.570 42.857 29.70 22.95 37.20 4.35
2352 3164 8.612619 GCGGAAGAGATAAGAAATTTCACATAA 58.387 33.333 19.99 1.29 0.00 1.90
2355 3167 5.937540 TGCGGAAGAGATAAGAAATTTCACA 59.062 36.000 19.99 7.50 0.00 3.58
2361 3173 5.344743 TGACTGCGGAAGAGATAAGAAAT 57.655 39.130 0.00 0.00 0.00 2.17
2382 3194 9.675464 TGACTAACCCTTACCATAGTAAAATTG 57.325 33.333 0.00 0.00 37.99 2.32
2455 3267 6.222389 AGAGAGAGTCAAATGAGTTTCTGTG 58.778 40.000 14.09 0.00 38.56 3.66
2459 3271 6.099341 GGAGAGAGAGAGTCAAATGAGTTTC 58.901 44.000 0.00 1.56 0.00 2.78
2492 3306 8.840833 AACTTTAAAACCTTCAAGAGCAAAAA 57.159 26.923 0.00 0.00 0.00 1.94
2494 3308 8.716909 CAAAACTTTAAAACCTTCAAGAGCAAA 58.283 29.630 0.00 0.00 0.00 3.68
2497 3311 6.312672 TGCAAAACTTTAAAACCTTCAAGAGC 59.687 34.615 0.00 0.00 0.00 4.09
2498 3312 7.826260 TGCAAAACTTTAAAACCTTCAAGAG 57.174 32.000 0.00 0.00 0.00 2.85
2518 3332 5.957771 AGGAGTCTAGTGGAAATATGCAA 57.042 39.130 0.00 0.00 0.00 4.08
2532 3346 8.603898 TGAAAGTAATGGTTCATAGGAGTCTA 57.396 34.615 0.00 0.00 0.00 2.59
2616 3430 4.519350 GCTCAAAAACAAGTTAGCTAGGGT 59.481 41.667 0.00 0.00 0.00 4.34
2621 3435 4.981806 TGTGCTCAAAAACAAGTTAGCT 57.018 36.364 0.00 0.00 0.00 3.32
2669 3483 6.771267 ACTAAAGCTAATAAGGGTTATGTGGC 59.229 38.462 0.00 0.00 0.00 5.01
2732 3546 0.376152 CATTGTGGTGCGAGAGATGC 59.624 55.000 0.00 0.00 0.00 3.91
2739 3553 3.724508 AAAAATCACATTGTGGTGCGA 57.275 38.095 16.46 0.00 38.66 5.10
2780 3596 3.115390 ACCATATGTGCCCTCACTTACT 58.885 45.455 1.24 0.00 43.49 2.24
2832 3648 6.613755 TTTCAAGGTAGAGCAAACAACTAC 57.386 37.500 0.00 0.00 36.69 2.73
2833 3649 8.911918 TTATTTCAAGGTAGAGCAAACAACTA 57.088 30.769 0.00 0.00 0.00 2.24
2935 3752 5.887035 TGTATGACATGCATTCAATCCTTCA 59.113 36.000 13.21 1.29 38.44 3.02
2960 3777 9.624373 ATCTCTAAGCAACATGAAGTAAATGAT 57.376 29.630 0.00 0.00 0.00 2.45
2998 3815 4.379813 CCCGCATGTTGCATAGGATATTTC 60.380 45.833 0.00 0.00 45.36 2.17
3007 3824 1.001517 ACACCCCGCATGTTGCATA 60.002 52.632 0.00 0.00 45.36 3.14
3010 3827 4.101790 CGACACCCCGCATGTTGC 62.102 66.667 0.00 0.00 40.69 4.17
3018 3835 1.386533 ATACACTAGACGACACCCCG 58.613 55.000 0.00 0.00 0.00 5.73
3019 3836 6.830873 ATTATATACACTAGACGACACCCC 57.169 41.667 0.00 0.00 0.00 4.95
3150 5470 9.708222 GCAAGTAGTCAAGTGTAATCATTTATG 57.292 33.333 0.00 0.00 0.00 1.90
3151 5471 9.448438 TGCAAGTAGTCAAGTGTAATCATTTAT 57.552 29.630 0.00 0.00 0.00 1.40
3152 5472 8.840833 TGCAAGTAGTCAAGTGTAATCATTTA 57.159 30.769 0.00 0.00 0.00 1.40
3153 5473 7.744087 TGCAAGTAGTCAAGTGTAATCATTT 57.256 32.000 0.00 0.00 0.00 2.32
3156 5476 7.744087 AAATGCAAGTAGTCAAGTGTAATCA 57.256 32.000 0.00 0.00 0.00 2.57
3157 5477 8.289618 TGAAAATGCAAGTAGTCAAGTGTAATC 58.710 33.333 0.00 0.00 0.00 1.75
3158 5478 8.165239 TGAAAATGCAAGTAGTCAAGTGTAAT 57.835 30.769 0.00 0.00 0.00 1.89
3165 5487 9.023962 AGGAATAATGAAAATGCAAGTAGTCAA 57.976 29.630 0.00 0.00 0.00 3.18
3210 5532 2.018542 ATACGTGACCGGGTTGAATG 57.981 50.000 6.32 0.00 38.78 2.67
3215 5537 3.953612 TCTTACATATACGTGACCGGGTT 59.046 43.478 6.32 0.00 38.78 4.11
3219 5541 5.428496 TTCCTCTTACATATACGTGACCG 57.572 43.478 0.00 0.00 40.83 4.79
3226 5548 9.685828 GTCAGACTGATTTCCTCTTACATATAC 57.314 37.037 8.73 0.00 0.00 1.47
3232 5554 7.327214 AGAATGTCAGACTGATTTCCTCTTAC 58.673 38.462 19.58 3.16 0.00 2.34
3269 5591 9.252962 CCTCTTTGCACCAATATCATTTAATTC 57.747 33.333 0.00 0.00 0.00 2.17
3310 5632 2.566724 ACAACATCCAATTGGCGGAATT 59.433 40.909 20.33 6.54 35.77 2.17
3338 5660 8.302438 ACATTCTCTTGATCCATGTTTTCTTTC 58.698 33.333 0.00 0.00 0.00 2.62
3490 5812 5.946298 TCATGTTGTTGAATGAGATCAAGC 58.054 37.500 0.00 0.00 39.84 4.01
3537 5859 5.101648 TCTAAAATAGTAACAACCGGGGG 57.898 43.478 6.32 0.00 0.00 5.40
3592 5915 2.823959 AGAGGTTAATGTGTCCCGGTA 58.176 47.619 0.00 0.00 0.00 4.02
3595 5918 6.753107 AATTTAAGAGGTTAATGTGTCCCG 57.247 37.500 0.00 0.00 0.00 5.14
3640 5963 5.013079 TGAATGTAGAGGATCCAGTGTTGTT 59.987 40.000 15.82 0.12 33.66 2.83
3657 5980 3.704800 TTCCCGACCAATGTGAATGTA 57.295 42.857 0.00 0.00 0.00 2.29
3671 5994 3.067461 CCATGTGAAAGTTGTTTTCCCGA 59.933 43.478 0.00 0.00 43.72 5.14
3692 6015 3.055747 CCCTTCACCTACTGACTTTCTCC 60.056 52.174 0.00 0.00 0.00 3.71
3696 6019 2.638363 GGACCCTTCACCTACTGACTTT 59.362 50.000 0.00 0.00 0.00 2.66
3702 6025 0.910088 GGCAGGACCCTTCACCTACT 60.910 60.000 0.00 0.00 34.87 2.57
3733 6056 2.369394 GGGTGGACTTTTGCTCATAGG 58.631 52.381 0.00 0.00 0.00 2.57
3736 6059 0.609131 CCGGGTGGACTTTTGCTCAT 60.609 55.000 0.00 0.00 37.49 2.90
3738 6061 1.971695 CCCGGGTGGACTTTTGCTC 60.972 63.158 14.18 0.00 37.49 4.26
3741 6064 0.958822 CTTTCCCGGGTGGACTTTTG 59.041 55.000 22.86 0.00 45.11 2.44
3742 6065 0.178973 CCTTTCCCGGGTGGACTTTT 60.179 55.000 22.86 0.00 45.11 2.27
3748 6071 3.523374 AAAGGCCTTTCCCGGGTGG 62.523 63.158 25.47 21.31 34.51 4.61
3749 6072 1.977009 GAAAGGCCTTTCCCGGGTG 60.977 63.158 38.01 12.04 42.20 4.61
3762 6085 3.332034 ACGAAATGACGGTTAGGAAAGG 58.668 45.455 0.00 0.00 37.61 3.11
3769 6092 4.856487 CGGTTAGTAACGAAATGACGGTTA 59.144 41.667 6.94 0.00 37.61 2.85
3775 6098 3.316071 TGCCGGTTAGTAACGAAATGA 57.684 42.857 1.90 0.00 0.00 2.57
3782 6105 5.813080 ATGAAAGATTGCCGGTTAGTAAC 57.187 39.130 1.90 4.32 0.00 2.50
3788 6111 2.029110 CACCAATGAAAGATTGCCGGTT 60.029 45.455 1.90 0.00 0.00 4.44
3798 6121 4.542735 GAAACCCGTTACACCAATGAAAG 58.457 43.478 0.00 0.00 0.00 2.62
3814 6137 7.272244 CCAAAAATATATTGGTCAGGAAACCC 58.728 38.462 10.64 0.00 41.95 4.11
3848 6171 6.797033 GTCGGTTGACAAATGATGAAACTAAG 59.203 38.462 0.00 0.00 44.82 2.18
3867 6191 0.391597 ATGTTGTCGGACAGTCGGTT 59.608 50.000 11.14 0.00 32.19 4.44
3869 6193 1.909376 CTATGTTGTCGGACAGTCGG 58.091 55.000 11.14 1.59 32.19 4.79
3874 6198 1.338674 CCAAGGCTATGTTGTCGGACA 60.339 52.381 6.76 6.76 0.00 4.02
3875 6199 1.338769 ACCAAGGCTATGTTGTCGGAC 60.339 52.381 0.00 0.00 0.00 4.79
3909 6233 5.997746 TGGAAAATCTCACAACTAGACCAAG 59.002 40.000 0.00 0.00 0.00 3.61
3933 6257 0.458543 CGCTGTCACATAGTCGCCTT 60.459 55.000 0.00 0.00 0.00 4.35
3934 6258 1.139734 CGCTGTCACATAGTCGCCT 59.860 57.895 0.00 0.00 0.00 5.52
3937 6261 2.194800 ACATCGCTGTCACATAGTCG 57.805 50.000 0.00 0.00 0.00 4.18
4025 6351 0.034574 TGGTTGCTTGGTCAGTGTGT 60.035 50.000 0.00 0.00 0.00 3.72
4054 6380 8.698973 TTTTGAATCCACACTCTTTTGGTATA 57.301 30.769 0.00 0.00 34.19 1.47
4055 6381 7.595819 TTTTGAATCCACACTCTTTTGGTAT 57.404 32.000 0.00 0.00 34.19 2.73
4056 6382 7.595819 ATTTTGAATCCACACTCTTTTGGTA 57.404 32.000 0.00 0.00 34.19 3.25
4057 6383 5.930837 TTTTGAATCCACACTCTTTTGGT 57.069 34.783 0.00 0.00 34.19 3.67
4059 6385 9.695526 TTGATATTTTGAATCCACACTCTTTTG 57.304 29.630 0.00 0.00 0.00 2.44
4110 6437 1.608590 CCATTATCATCCGGTTGTGGC 59.391 52.381 12.19 0.00 0.00 5.01
4288 6628 7.189079 TGAATGTGGTGTGTATTATGGTCTA 57.811 36.000 0.00 0.00 0.00 2.59
4292 6632 7.572523 AGATTGAATGTGGTGTGTATTATGG 57.427 36.000 0.00 0.00 0.00 2.74
4303 6643 2.819608 CCGGAACAAGATTGAATGTGGT 59.180 45.455 0.00 0.00 0.00 4.16
4304 6644 2.819608 ACCGGAACAAGATTGAATGTGG 59.180 45.455 9.46 0.00 0.00 4.17
4323 6663 5.886960 AGTGTCTTCATAATGCAGAAACC 57.113 39.130 0.00 0.00 29.67 3.27
4361 6701 9.498176 GGAACTGTAACTCCTAAAATGAAACTA 57.502 33.333 0.00 0.00 0.00 2.24
4404 6744 4.428294 AGTGCAACATATGTGCTCCTAT 57.572 40.909 22.31 8.31 41.43 2.57
4431 6771 4.230314 GCTGTACTAGATGCGATTGAGA 57.770 45.455 0.00 0.00 0.00 3.27
4439 6779 2.776312 TGTAGCGCTGTACTAGATGC 57.224 50.000 22.90 0.00 0.00 3.91
4451 6791 2.094762 TTCTCCCTCTTTTGTAGCGC 57.905 50.000 0.00 0.00 0.00 5.92
4454 6794 6.054860 TCTTCCATTCTCCCTCTTTTGTAG 57.945 41.667 0.00 0.00 0.00 2.74
4469 6809 9.028284 ACAATGAGTATTTGTTCATCTTCCATT 57.972 29.630 0.00 0.00 0.00 3.16
4475 6815 9.903682 CTTTTGACAATGAGTATTTGTTCATCT 57.096 29.630 0.00 0.00 0.00 2.90
4476 6816 9.897744 TCTTTTGACAATGAGTATTTGTTCATC 57.102 29.630 0.00 0.00 0.00 2.92
4487 6827 9.305925 GTTCATCTTTTTCTTTTGACAATGAGT 57.694 29.630 0.00 0.00 29.76 3.41
4488 6828 9.304731 TGTTCATCTTTTTCTTTTGACAATGAG 57.695 29.630 0.00 0.00 29.76 2.90
4489 6829 9.650539 TTGTTCATCTTTTTCTTTTGACAATGA 57.349 25.926 0.00 0.00 30.46 2.57
4554 6897 4.447054 TGTTTGACTTGCTTTGTGTTGTTG 59.553 37.500 0.00 0.00 0.00 3.33
4555 6898 4.447389 GTGTTTGACTTGCTTTGTGTTGTT 59.553 37.500 0.00 0.00 0.00 2.83



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.