Multiple sequence alignment - TraesCS7A01G338800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G338800 chr7A 100.000 3198 0 0 1 3198 495583442 495580245 0.000000e+00 5906.0
1 TraesCS7A01G338800 chr7A 81.461 178 27 6 33 206 511945820 511945645 1.200000e-29 141.0
2 TraesCS7A01G338800 chr7D 92.810 1502 82 16 895 2387 444379222 444377738 0.000000e+00 2152.0
3 TraesCS7A01G338800 chr7D 91.506 624 44 6 2584 3198 615470458 615471081 0.000000e+00 850.0
4 TraesCS7A01G338800 chr7D 91.506 624 41 5 2585 3198 536431621 536432242 0.000000e+00 848.0
5 TraesCS7A01G338800 chr7D 93.333 45 3 0 2479 2523 78185655 78185699 2.060000e-07 67.6
6 TraesCS7A01G338800 chr7B 90.339 1532 93 23 895 2387 461247590 461246075 0.000000e+00 1958.0
7 TraesCS7A01G338800 chr7B 92.500 40 2 1 2451 2489 70553280 70553241 4.460000e-04 56.5
8 TraesCS7A01G338800 chr2D 93.237 621 33 3 2584 3196 111146340 111145721 0.000000e+00 905.0
9 TraesCS7A01G338800 chr2D 75.641 468 94 16 306 762 11273860 11274318 6.950000e-52 215.0
10 TraesCS7A01G338800 chr2D 93.478 46 3 0 2478 2523 71757686 71757641 5.720000e-08 69.4
11 TraesCS7A01G338800 chr1D 92.949 624 33 8 2585 3198 393529353 393529975 0.000000e+00 898.0
12 TraesCS7A01G338800 chr1D 75.741 742 137 30 22 745 3996489 3997205 1.840000e-87 333.0
13 TraesCS7A01G338800 chr6D 92.581 620 40 3 2585 3198 455132756 455132137 0.000000e+00 885.0
14 TraesCS7A01G338800 chr5D 92.557 618 38 4 2582 3198 347478053 347477443 0.000000e+00 880.0
15 TraesCS7A01G338800 chr5D 92.345 614 39 4 2585 3196 465679634 465680241 0.000000e+00 867.0
16 TraesCS7A01G338800 chr5D 76.913 771 140 27 33 783 543815484 543816236 1.380000e-108 403.0
17 TraesCS7A01G338800 chr5D 92.857 42 2 1 2448 2488 482654454 482654495 3.450000e-05 60.2
18 TraesCS7A01G338800 chr4D 92.020 614 41 5 2586 3198 442394110 442393504 0.000000e+00 856.0
19 TraesCS7A01G338800 chr4D 91.653 623 39 5 2583 3196 442252090 442252708 0.000000e+00 850.0
20 TraesCS7A01G338800 chr4D 78.431 204 37 4 154 351 467731710 467731912 3.350000e-25 126.0
21 TraesCS7A01G338800 chr5A 77.086 755 139 22 47 784 589019202 589018465 3.840000e-109 405.0
22 TraesCS7A01G338800 chr5A 100.000 30 0 0 2494 2523 45703396 45703367 4.460000e-04 56.5
23 TraesCS7A01G338800 chr5B 79.878 492 82 14 303 784 685693082 685692598 8.490000e-91 344.0
24 TraesCS7A01G338800 chr5B 84.615 130 19 1 78 206 271102895 271103024 9.310000e-26 128.0
25 TraesCS7A01G338800 chr5B 93.182 44 3 0 2447 2490 560038412 560038455 7.400000e-07 65.8
26 TraesCS7A01G338800 chr3D 75.499 751 139 21 59 769 48792754 48793499 3.080000e-85 326.0
27 TraesCS7A01G338800 chr3D 73.753 381 90 10 33 406 33954805 33955182 1.200000e-29 141.0
28 TraesCS7A01G338800 chr3D 93.182 44 2 1 2447 2490 536429919 536429877 2.660000e-06 63.9
29 TraesCS7A01G338800 chr2A 77.468 466 82 15 323 779 603768798 603769249 1.140000e-64 257.0
30 TraesCS7A01G338800 chr2A 88.158 76 7 2 2449 2523 61385991 61385917 4.390000e-14 89.8
31 TraesCS7A01G338800 chr1B 74.566 519 109 14 3 512 7413500 7412996 4.180000e-49 206.0
32 TraesCS7A01G338800 chr1B 95.556 45 2 0 2446 2490 654502895 654502939 4.430000e-09 73.1
33 TraesCS7A01G338800 chrUn 72.005 743 155 34 80 784 38172373 38171646 1.530000e-38 171.0
34 TraesCS7A01G338800 chrUn 74.084 382 88 11 33 406 161604089 161604467 2.570000e-31 147.0
35 TraesCS7A01G338800 chrUn 73.491 381 91 10 33 406 161607035 161607412 5.560000e-28 135.0
36 TraesCS7A01G338800 chrUn 100.000 29 0 0 2495 2523 322491465 322491493 2.000000e-03 54.7
37 TraesCS7A01G338800 chr1A 93.333 45 3 0 2479 2523 447120696 447120740 2.060000e-07 67.6
38 TraesCS7A01G338800 chr6B 80.851 94 4 6 2442 2523 466985298 466985389 9.580000e-06 62.1
39 TraesCS7A01G338800 chr4B 96.875 32 1 0 2495 2526 470038585 470038554 2.000000e-03 54.7
40 TraesCS7A01G338800 chr3B 86.538 52 4 3 2483 2532 811761262 811761312 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G338800 chr7A 495580245 495583442 3197 True 5906 5906 100.000 1 3198 1 chr7A.!!$R1 3197
1 TraesCS7A01G338800 chr7D 444377738 444379222 1484 True 2152 2152 92.810 895 2387 1 chr7D.!!$R1 1492
2 TraesCS7A01G338800 chr7D 615470458 615471081 623 False 850 850 91.506 2584 3198 1 chr7D.!!$F3 614
3 TraesCS7A01G338800 chr7D 536431621 536432242 621 False 848 848 91.506 2585 3198 1 chr7D.!!$F2 613
4 TraesCS7A01G338800 chr7B 461246075 461247590 1515 True 1958 1958 90.339 895 2387 1 chr7B.!!$R2 1492
5 TraesCS7A01G338800 chr2D 111145721 111146340 619 True 905 905 93.237 2584 3196 1 chr2D.!!$R2 612
6 TraesCS7A01G338800 chr1D 393529353 393529975 622 False 898 898 92.949 2585 3198 1 chr1D.!!$F2 613
7 TraesCS7A01G338800 chr1D 3996489 3997205 716 False 333 333 75.741 22 745 1 chr1D.!!$F1 723
8 TraesCS7A01G338800 chr6D 455132137 455132756 619 True 885 885 92.581 2585 3198 1 chr6D.!!$R1 613
9 TraesCS7A01G338800 chr5D 347477443 347478053 610 True 880 880 92.557 2582 3198 1 chr5D.!!$R1 616
10 TraesCS7A01G338800 chr5D 465679634 465680241 607 False 867 867 92.345 2585 3196 1 chr5D.!!$F1 611
11 TraesCS7A01G338800 chr5D 543815484 543816236 752 False 403 403 76.913 33 783 1 chr5D.!!$F3 750
12 TraesCS7A01G338800 chr4D 442393504 442394110 606 True 856 856 92.020 2586 3198 1 chr4D.!!$R1 612
13 TraesCS7A01G338800 chr4D 442252090 442252708 618 False 850 850 91.653 2583 3196 1 chr4D.!!$F1 613
14 TraesCS7A01G338800 chr5A 589018465 589019202 737 True 405 405 77.086 47 784 1 chr5A.!!$R2 737
15 TraesCS7A01G338800 chr3D 48792754 48793499 745 False 326 326 75.499 59 769 1 chr3D.!!$F2 710
16 TraesCS7A01G338800 chr1B 7412996 7413500 504 True 206 206 74.566 3 512 1 chr1B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 421 0.032017 AGGATAAGAGTGCCCGAGGT 60.032 55.0 0.00 0.00 0.00 3.85 F
496 559 0.098025 CAACAAAGGAACACACGCGT 59.902 50.0 5.58 5.58 0.00 6.01 F
564 633 0.107945 CTCCAAAGAAGAGGAGGGCG 60.108 60.0 0.00 0.00 46.11 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1428 0.163788 GTCTCACGGCACAACAATCG 59.836 55.0 0.0 0.0 0.00 3.34 R
1350 1429 0.163788 CGTCTCACGGCACAACAATC 59.836 55.0 0.0 0.0 38.08 2.67 R
2508 2626 0.042731 ATCTTCTCCCTCCGTCCCAA 59.957 55.0 0.0 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.440946 CATCCCCATACGCTCTCCA 58.559 57.895 0.00 0.00 0.00 3.86
27 28 1.629043 TACGCTCTCCAGACCAAACT 58.371 50.000 0.00 0.00 0.00 2.66
40 41 2.237392 GACCAAACTCTAGCCACTCCAT 59.763 50.000 0.00 0.00 0.00 3.41
43 44 3.054802 CCAAACTCTAGCCACTCCATTCT 60.055 47.826 0.00 0.00 0.00 2.40
114 120 1.880340 GCAGCGAATCTGACTCCGG 60.880 63.158 0.00 0.00 45.72 5.14
135 141 1.475280 CCAGTCCAAATCCGTCGACTA 59.525 52.381 14.70 1.58 33.87 2.59
210 216 2.681778 CTCCTGGGAGGACTGCGT 60.682 66.667 8.68 0.00 40.06 5.24
211 221 2.203788 TCCTGGGAGGACTGCGTT 60.204 61.111 0.00 0.00 40.06 4.84
216 226 2.637383 GGGAGGACTGCGTTCGACT 61.637 63.158 0.00 0.00 0.00 4.18
217 227 1.444553 GGAGGACTGCGTTCGACTG 60.445 63.158 0.00 0.00 0.00 3.51
218 228 1.286260 GAGGACTGCGTTCGACTGT 59.714 57.895 0.00 0.00 0.00 3.55
219 229 0.318784 GAGGACTGCGTTCGACTGTT 60.319 55.000 0.00 0.00 0.00 3.16
233 243 0.253160 ACTGTTGGGGGATCTGCCTA 60.253 55.000 0.00 0.00 36.66 3.93
236 246 1.004758 TTGGGGGATCTGCCTAGCT 59.995 57.895 0.00 0.00 36.66 3.32
242 252 1.346068 GGGATCTGCCTAGCTCGAATT 59.654 52.381 0.00 0.00 36.66 2.17
251 261 2.033407 CCTAGCTCGAATTCATTGCGTG 60.033 50.000 6.22 4.92 0.00 5.34
274 284 1.296392 CAACGGGCACTCAGATCCA 59.704 57.895 0.00 0.00 0.00 3.41
275 285 0.107508 CAACGGGCACTCAGATCCAT 60.108 55.000 0.00 0.00 0.00 3.41
296 306 0.706433 AGGGCTGGATCATTGTGGTT 59.294 50.000 0.00 0.00 0.00 3.67
374 410 3.031736 CCGTGGGAAAGAGAGGATAAGA 58.968 50.000 0.00 0.00 0.00 2.10
378 414 3.452627 TGGGAAAGAGAGGATAAGAGTGC 59.547 47.826 0.00 0.00 0.00 4.40
385 421 0.032017 AGGATAAGAGTGCCCGAGGT 60.032 55.000 0.00 0.00 0.00 3.85
410 446 2.358615 GCTGTCGACATGGTGGCA 60.359 61.111 20.40 0.00 0.00 4.92
412 448 1.293179 CTGTCGACATGGTGGCAGA 59.707 57.895 20.40 0.00 0.00 4.26
413 449 0.107993 CTGTCGACATGGTGGCAGAT 60.108 55.000 20.40 0.00 0.00 2.90
416 461 0.176449 TCGACATGGTGGCAGATGAG 59.824 55.000 12.26 6.81 0.00 2.90
448 511 1.134965 CGCTGTTGTAGAGGAGGAAGG 60.135 57.143 0.00 0.00 0.00 3.46
467 530 2.592574 ATCCGTGCCCGCATCATG 60.593 61.111 0.00 0.00 0.00 3.07
482 545 3.613193 GCATCATGAAGAAGCAGCAACAA 60.613 43.478 0.00 0.00 40.56 2.83
496 559 0.098025 CAACAAAGGAACACACGCGT 59.902 50.000 5.58 5.58 0.00 6.01
503 566 1.590525 GAACACACGCGTCCTCACA 60.591 57.895 9.86 0.00 0.00 3.58
546 610 3.402681 CCATGGACGGACTGCCCT 61.403 66.667 5.56 0.00 0.00 5.19
554 620 1.374947 CGGACTGCCCTCCAAAGAA 59.625 57.895 0.00 0.00 0.00 2.52
564 633 0.107945 CTCCAAAGAAGAGGAGGGCG 60.108 60.000 0.00 0.00 46.11 6.13
566 635 1.679898 CAAAGAAGAGGAGGGCGGT 59.320 57.895 0.00 0.00 0.00 5.68
568 637 1.842381 AAAGAAGAGGAGGGCGGTGG 61.842 60.000 0.00 0.00 0.00 4.61
584 653 3.692406 GGCGGGTCGGACAACTCT 61.692 66.667 10.76 0.00 0.00 3.24
585 654 2.345760 GGCGGGTCGGACAACTCTA 61.346 63.158 10.76 0.00 0.00 2.43
593 662 0.167470 CGGACAACTCTAGCGACGAA 59.833 55.000 0.00 0.00 0.00 3.85
597 666 0.985549 CAACTCTAGCGACGAACAGC 59.014 55.000 0.00 0.00 0.00 4.40
639 709 2.800544 GTTTTCGAGTGCTACTTCTGCA 59.199 45.455 0.00 0.00 38.19 4.41
664 734 3.788766 CGGCAAGGGCGTCGAAAG 61.789 66.667 3.87 0.00 46.33 2.62
667 737 2.345991 CAAGGGCGTCGAAAGGGA 59.654 61.111 0.00 0.00 0.00 4.20
688 758 0.620556 AAGGGCAGTCGTGGATGATT 59.379 50.000 0.00 0.00 0.00 2.57
706 776 8.316946 TGGATGATTTTCTCCATAGCTAGTATG 58.683 37.037 0.00 0.00 36.63 2.39
748 818 6.801539 TTTTGTTAGTCTGATGACATGTCC 57.198 37.500 22.85 9.16 45.20 4.02
751 821 4.772100 TGTTAGTCTGATGACATGTCCTGA 59.228 41.667 22.85 14.07 45.20 3.86
759 829 6.264067 TCTGATGACATGTCCTGATGTAGTAG 59.736 42.308 22.85 5.47 36.67 2.57
761 831 3.384789 TGACATGTCCTGATGTAGTAGCC 59.615 47.826 22.85 0.00 36.67 3.93
763 833 2.430248 TGTCCTGATGTAGTAGCCGA 57.570 50.000 0.00 0.00 0.00 5.54
765 835 2.426024 TGTCCTGATGTAGTAGCCGAAC 59.574 50.000 0.00 0.00 0.00 3.95
769 839 3.243434 CCTGATGTAGTAGCCGAACGATT 60.243 47.826 0.00 0.00 0.00 3.34
770 840 4.023450 CCTGATGTAGTAGCCGAACGATTA 60.023 45.833 0.00 0.00 0.00 1.75
771 841 5.104562 TGATGTAGTAGCCGAACGATTAG 57.895 43.478 0.00 0.00 0.00 1.73
780 850 2.787723 GCCGAACGATTAGTGTTGCATG 60.788 50.000 0.00 0.00 0.00 4.06
781 851 2.415168 CCGAACGATTAGTGTTGCATGT 59.585 45.455 0.00 0.00 0.00 3.21
784 854 4.909305 CGAACGATTAGTGTTGCATGTTTT 59.091 37.500 0.00 0.00 0.00 2.43
785 855 5.398122 CGAACGATTAGTGTTGCATGTTTTT 59.602 36.000 0.00 0.00 0.00 1.94
786 856 6.575572 CGAACGATTAGTGTTGCATGTTTTTA 59.424 34.615 0.00 0.00 0.00 1.52
787 857 7.270365 CGAACGATTAGTGTTGCATGTTTTTAT 59.730 33.333 0.00 0.00 0.00 1.40
788 858 9.549509 GAACGATTAGTGTTGCATGTTTTTATA 57.450 29.630 0.00 0.00 0.00 0.98
818 888 8.579850 TTTGAGGTTTGCTATAATTGAGATGT 57.420 30.769 0.00 0.00 0.00 3.06
819 889 7.558161 TGAGGTTTGCTATAATTGAGATGTG 57.442 36.000 0.00 0.00 0.00 3.21
820 890 7.112122 TGAGGTTTGCTATAATTGAGATGTGT 58.888 34.615 0.00 0.00 0.00 3.72
821 891 7.066163 TGAGGTTTGCTATAATTGAGATGTGTG 59.934 37.037 0.00 0.00 0.00 3.82
822 892 6.319658 AGGTTTGCTATAATTGAGATGTGTGG 59.680 38.462 0.00 0.00 0.00 4.17
823 893 6.460123 GGTTTGCTATAATTGAGATGTGTGGG 60.460 42.308 0.00 0.00 0.00 4.61
824 894 5.628797 TGCTATAATTGAGATGTGTGGGA 57.371 39.130 0.00 0.00 0.00 4.37
825 895 6.191657 TGCTATAATTGAGATGTGTGGGAT 57.808 37.500 0.00 0.00 0.00 3.85
826 896 5.999600 TGCTATAATTGAGATGTGTGGGATG 59.000 40.000 0.00 0.00 0.00 3.51
827 897 6.183361 TGCTATAATTGAGATGTGTGGGATGA 60.183 38.462 0.00 0.00 0.00 2.92
828 898 6.712095 GCTATAATTGAGATGTGTGGGATGAA 59.288 38.462 0.00 0.00 0.00 2.57
829 899 7.229306 GCTATAATTGAGATGTGTGGGATGAAA 59.771 37.037 0.00 0.00 0.00 2.69
830 900 7.959658 ATAATTGAGATGTGTGGGATGAAAA 57.040 32.000 0.00 0.00 0.00 2.29
831 901 6.862469 AATTGAGATGTGTGGGATGAAAAT 57.138 33.333 0.00 0.00 0.00 1.82
832 902 6.862469 ATTGAGATGTGTGGGATGAAAATT 57.138 33.333 0.00 0.00 0.00 1.82
833 903 6.669125 TTGAGATGTGTGGGATGAAAATTT 57.331 33.333 0.00 0.00 0.00 1.82
834 904 6.028146 TGAGATGTGTGGGATGAAAATTTG 57.972 37.500 0.00 0.00 0.00 2.32
835 905 5.774184 TGAGATGTGTGGGATGAAAATTTGA 59.226 36.000 0.00 0.00 0.00 2.69
836 906 6.267242 TGAGATGTGTGGGATGAAAATTTGAA 59.733 34.615 0.00 0.00 0.00 2.69
837 907 6.694447 AGATGTGTGGGATGAAAATTTGAAG 58.306 36.000 0.00 0.00 0.00 3.02
838 908 5.867903 TGTGTGGGATGAAAATTTGAAGT 57.132 34.783 0.00 0.00 0.00 3.01
839 909 5.599732 TGTGTGGGATGAAAATTTGAAGTG 58.400 37.500 0.00 0.00 0.00 3.16
840 910 5.128499 TGTGTGGGATGAAAATTTGAAGTGT 59.872 36.000 0.00 0.00 0.00 3.55
841 911 6.322456 TGTGTGGGATGAAAATTTGAAGTGTA 59.678 34.615 0.00 0.00 0.00 2.90
842 912 6.863126 GTGTGGGATGAAAATTTGAAGTGTAG 59.137 38.462 0.00 0.00 0.00 2.74
843 913 5.863935 GTGGGATGAAAATTTGAAGTGTAGC 59.136 40.000 0.00 0.00 0.00 3.58
844 914 5.047377 TGGGATGAAAATTTGAAGTGTAGCC 60.047 40.000 0.00 0.00 0.00 3.93
845 915 5.095490 GGATGAAAATTTGAAGTGTAGCCG 58.905 41.667 0.00 0.00 0.00 5.52
846 916 5.106317 GGATGAAAATTTGAAGTGTAGCCGA 60.106 40.000 0.00 0.00 0.00 5.54
847 917 5.957842 TGAAAATTTGAAGTGTAGCCGAT 57.042 34.783 0.00 0.00 0.00 4.18
848 918 5.938322 TGAAAATTTGAAGTGTAGCCGATC 58.062 37.500 0.00 0.00 0.00 3.69
849 919 5.471797 TGAAAATTTGAAGTGTAGCCGATCA 59.528 36.000 0.00 0.00 0.00 2.92
850 920 5.551760 AAATTTGAAGTGTAGCCGATCAG 57.448 39.130 0.00 0.00 0.00 2.90
851 921 2.010145 TTGAAGTGTAGCCGATCAGC 57.990 50.000 0.00 0.00 0.00 4.26
852 922 0.179137 TGAAGTGTAGCCGATCAGCG 60.179 55.000 0.00 0.00 38.01 5.18
853 923 0.179134 GAAGTGTAGCCGATCAGCGT 60.179 55.000 0.00 0.00 38.67 5.07
854 924 0.246635 AAGTGTAGCCGATCAGCGTT 59.753 50.000 0.00 0.00 38.67 4.84
855 925 0.246635 AGTGTAGCCGATCAGCGTTT 59.753 50.000 0.00 0.00 38.67 3.60
856 926 1.076332 GTGTAGCCGATCAGCGTTTT 58.924 50.000 0.00 0.00 38.67 2.43
857 927 2.094390 AGTGTAGCCGATCAGCGTTTTA 60.094 45.455 0.00 0.00 38.67 1.52
858 928 2.281762 GTGTAGCCGATCAGCGTTTTAG 59.718 50.000 0.00 0.00 38.67 1.85
859 929 1.859080 GTAGCCGATCAGCGTTTTAGG 59.141 52.381 0.00 0.00 38.67 2.69
860 930 0.462047 AGCCGATCAGCGTTTTAGGG 60.462 55.000 0.00 0.00 38.67 3.53
861 931 2.014594 CCGATCAGCGTTTTAGGGC 58.985 57.895 0.00 0.00 38.67 5.19
862 932 0.742990 CCGATCAGCGTTTTAGGGCA 60.743 55.000 0.00 0.00 38.67 5.36
863 933 0.652592 CGATCAGCGTTTTAGGGCAG 59.347 55.000 0.00 0.00 34.64 4.85
864 934 1.017387 GATCAGCGTTTTAGGGCAGG 58.983 55.000 0.00 0.00 0.00 4.85
865 935 0.618458 ATCAGCGTTTTAGGGCAGGA 59.382 50.000 0.00 0.00 0.00 3.86
866 936 0.618458 TCAGCGTTTTAGGGCAGGAT 59.382 50.000 0.00 0.00 0.00 3.24
867 937 1.004277 TCAGCGTTTTAGGGCAGGATT 59.996 47.619 0.00 0.00 0.00 3.01
868 938 1.818674 CAGCGTTTTAGGGCAGGATTT 59.181 47.619 0.00 0.00 0.00 2.17
869 939 1.818674 AGCGTTTTAGGGCAGGATTTG 59.181 47.619 0.00 0.00 0.00 2.32
880 950 1.597742 CAGGATTTGCCATACTCCGG 58.402 55.000 0.00 0.00 40.02 5.14
881 951 1.134098 CAGGATTTGCCATACTCCGGT 60.134 52.381 0.00 0.00 40.02 5.28
882 952 1.564348 AGGATTTGCCATACTCCGGTT 59.436 47.619 0.00 0.00 40.02 4.44
883 953 1.676006 GGATTTGCCATACTCCGGTTG 59.324 52.381 0.00 0.00 36.34 3.77
884 954 2.365582 GATTTGCCATACTCCGGTTGT 58.634 47.619 0.00 4.59 0.00 3.32
885 955 3.537580 GATTTGCCATACTCCGGTTGTA 58.462 45.455 0.00 6.95 0.00 2.41
886 956 3.420300 TTTGCCATACTCCGGTTGTAA 57.580 42.857 0.00 0.00 0.00 2.41
887 957 3.420300 TTGCCATACTCCGGTTGTAAA 57.580 42.857 0.00 0.00 0.00 2.01
888 958 3.637911 TGCCATACTCCGGTTGTAAAT 57.362 42.857 0.00 0.00 0.00 1.40
889 959 3.275143 TGCCATACTCCGGTTGTAAATG 58.725 45.455 0.00 4.02 0.00 2.32
890 960 2.032924 GCCATACTCCGGTTGTAAATGC 59.967 50.000 0.00 7.24 0.00 3.56
891 961 3.541632 CCATACTCCGGTTGTAAATGCT 58.458 45.455 0.00 0.00 0.00 3.79
892 962 3.560068 CCATACTCCGGTTGTAAATGCTC 59.440 47.826 0.00 0.00 0.00 4.26
893 963 2.851263 ACTCCGGTTGTAAATGCTCA 57.149 45.000 0.00 0.00 0.00 4.26
943 1022 3.131240 ACACAAACGAACAAGCAAGAC 57.869 42.857 0.00 0.00 0.00 3.01
945 1024 1.063469 ACAAACGAACAAGCAAGACGG 59.937 47.619 0.00 0.00 0.00 4.79
947 1026 1.375551 AACGAACAAGCAAGACGGTT 58.624 45.000 0.00 0.00 35.07 4.44
949 1028 1.217882 CGAACAAGCAAGACGGTTCT 58.782 50.000 0.00 0.00 37.94 3.01
950 1029 2.223876 ACGAACAAGCAAGACGGTTCTA 60.224 45.455 0.00 0.00 37.94 2.10
951 1030 2.408704 CGAACAAGCAAGACGGTTCTAG 59.591 50.000 0.00 0.00 37.94 2.43
952 1031 3.650139 GAACAAGCAAGACGGTTCTAGA 58.350 45.455 0.00 0.00 37.31 2.43
953 1032 3.305398 ACAAGCAAGACGGTTCTAGAG 57.695 47.619 0.00 0.00 31.36 2.43
954 1033 2.891580 ACAAGCAAGACGGTTCTAGAGA 59.108 45.455 0.00 0.00 31.36 3.10
955 1034 3.057174 ACAAGCAAGACGGTTCTAGAGAG 60.057 47.826 0.00 0.00 31.36 3.20
958 1037 3.690628 AGCAAGACGGTTCTAGAGAGTAC 59.309 47.826 0.00 0.00 0.00 2.73
1117 1196 4.530857 CCGCCTCCACGATGGACC 62.531 72.222 3.02 0.00 42.67 4.46
1312 1391 3.118956 CCTCCAGCTCGTTAGTTCATCTT 60.119 47.826 0.00 0.00 0.00 2.40
1318 1397 6.183360 CCAGCTCGTTAGTTCATCTTTACTTG 60.183 42.308 0.00 0.00 0.00 3.16
1340 1419 2.688958 AGTACAGTCGCATTCCTACTCC 59.311 50.000 0.00 0.00 0.00 3.85
1346 1425 0.749649 CGCATTCCTACTCCTCTGCT 59.250 55.000 0.00 0.00 0.00 4.24
1347 1426 1.537776 CGCATTCCTACTCCTCTGCTG 60.538 57.143 0.00 0.00 0.00 4.41
1348 1427 1.809651 GCATTCCTACTCCTCTGCTGC 60.810 57.143 0.00 0.00 0.00 5.25
1349 1428 1.127343 ATTCCTACTCCTCTGCTGCC 58.873 55.000 0.00 0.00 0.00 4.85
1350 1429 1.323271 TTCCTACTCCTCTGCTGCCG 61.323 60.000 0.00 0.00 0.00 5.69
1351 1430 1.754621 CCTACTCCTCTGCTGCCGA 60.755 63.158 0.00 0.00 0.00 5.54
1353 1432 0.749649 CTACTCCTCTGCTGCCGATT 59.250 55.000 0.00 0.00 0.00 3.34
1354 1433 0.461548 TACTCCTCTGCTGCCGATTG 59.538 55.000 0.00 0.00 0.00 2.67
1355 1434 1.220206 CTCCTCTGCTGCCGATTGT 59.780 57.895 0.00 0.00 0.00 2.71
1356 1435 0.392193 CTCCTCTGCTGCCGATTGTT 60.392 55.000 0.00 0.00 0.00 2.83
1357 1436 0.674581 TCCTCTGCTGCCGATTGTTG 60.675 55.000 0.00 0.00 0.00 3.33
1528 1616 0.317854 GGTTTGTCTGCAACCGAAGC 60.318 55.000 0.00 0.00 33.82 3.86
1534 1622 2.669569 TGCAACCGAAGCAGGAGC 60.670 61.111 0.00 4.53 37.02 4.70
1550 1638 1.163554 GAGCTCACTTTCTTGCCTGG 58.836 55.000 9.40 0.00 0.00 4.45
1569 1657 3.999663 CTGGATGGTTCTGAACTTCTGAC 59.000 47.826 19.05 3.27 0.00 3.51
1570 1658 3.244561 TGGATGGTTCTGAACTTCTGACC 60.245 47.826 19.05 13.73 0.00 4.02
1572 1660 1.070134 TGGTTCTGAACTTCTGACCGG 59.930 52.381 19.05 0.00 0.00 5.28
1580 1668 2.125552 TTCTGACCGGCATGCTCG 60.126 61.111 18.92 18.44 0.00 5.03
1593 1681 1.064505 CATGCTCGTGCCCATGTAAAG 59.935 52.381 7.05 0.00 38.71 1.85
1598 1688 2.673368 CTCGTGCCCATGTAAAGAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
1601 1691 3.412386 GTGCCCATGTAAAGAGTTCAGT 58.588 45.455 0.00 0.00 0.00 3.41
1608 1698 6.206634 CCCATGTAAAGAGTTCAGTTTTGCTA 59.793 38.462 0.00 0.00 0.00 3.49
1609 1699 7.094205 CCCATGTAAAGAGTTCAGTTTTGCTAT 60.094 37.037 0.00 0.00 0.00 2.97
1610 1700 8.299570 CCATGTAAAGAGTTCAGTTTTGCTATT 58.700 33.333 0.00 0.00 0.00 1.73
1611 1701 9.121517 CATGTAAAGAGTTCAGTTTTGCTATTG 57.878 33.333 0.00 0.00 0.00 1.90
1612 1702 7.138736 TGTAAAGAGTTCAGTTTTGCTATTGC 58.861 34.615 0.00 0.00 40.20 3.56
1641 1731 5.295292 TGCAAGTGATAGCTAGCTGAAAATC 59.705 40.000 27.68 20.72 0.00 2.17
1680 1770 0.613777 ACTTGGGGACGGTGAATCTC 59.386 55.000 0.00 0.00 0.00 2.75
1689 1779 1.413767 CGGTGAATCTCGTGGAAGCG 61.414 60.000 0.00 0.00 0.00 4.68
1743 1833 3.994392 TCGTGAGCTCCATTTTAGTGAAC 59.006 43.478 12.15 0.00 0.00 3.18
1791 1881 1.002366 CAGCCTACATCGTGCTCAAC 58.998 55.000 0.00 0.00 31.77 3.18
1851 1941 3.654806 AGAAATACATCAGGGGATCAGGG 59.345 47.826 0.00 0.00 0.00 4.45
1863 1953 4.354087 AGGGGATCAGGGATAAATTACACC 59.646 45.833 0.00 0.00 0.00 4.16
1902 1992 4.643387 ACAGAACAGCCGCCCACC 62.643 66.667 0.00 0.00 0.00 4.61
1969 2059 3.909732 TCTTCACCATGGAACCTTGTTT 58.090 40.909 21.47 0.00 0.00 2.83
1970 2060 5.055265 TCTTCACCATGGAACCTTGTTTA 57.945 39.130 21.47 0.00 0.00 2.01
2210 2325 4.070716 ACAGAAATGAGTTCTTGAGCCTG 58.929 43.478 0.00 0.00 44.64 4.85
2257 2372 2.190981 CCTAATACGGCGTCAGTGAAC 58.809 52.381 19.21 0.00 0.00 3.18
2261 2376 0.386476 TACGGCGTCAGTGAACTGTT 59.614 50.000 19.21 0.00 44.12 3.16
2262 2377 1.151777 ACGGCGTCAGTGAACTGTTG 61.152 55.000 6.77 5.55 44.12 3.33
2264 2379 1.014352 GGCGTCAGTGAACTGTTGTT 58.986 50.000 10.14 0.00 44.12 2.83
2265 2380 1.268032 GGCGTCAGTGAACTGTTGTTG 60.268 52.381 10.14 0.00 44.12 3.33
2307 2425 5.824624 TGGTTCATCTATGGAATTCAGAAGC 59.175 40.000 7.93 8.89 34.07 3.86
2387 2505 3.487372 GTTTAGCCAAAGAGAACCCACT 58.513 45.455 0.00 0.00 0.00 4.00
2388 2506 3.418684 TTAGCCAAAGAGAACCCACTC 57.581 47.619 0.00 0.00 37.19 3.51
2389 2507 0.035458 AGCCAAAGAGAACCCACTCG 59.965 55.000 0.00 0.00 41.25 4.18
2390 2508 0.034896 GCCAAAGAGAACCCACTCGA 59.965 55.000 0.00 0.00 41.25 4.04
2391 2509 1.797025 CCAAAGAGAACCCACTCGAC 58.203 55.000 0.00 0.00 41.25 4.20
2392 2510 1.608283 CCAAAGAGAACCCACTCGACC 60.608 57.143 0.00 0.00 41.25 4.79
2393 2511 0.317479 AAAGAGAACCCACTCGACCG 59.683 55.000 0.00 0.00 41.25 4.79
2394 2512 2.126031 GAGAACCCACTCGACCGC 60.126 66.667 0.00 0.00 0.00 5.68
2395 2513 2.915659 AGAACCCACTCGACCGCA 60.916 61.111 0.00 0.00 0.00 5.69
2396 2514 2.227089 GAGAACCCACTCGACCGCAT 62.227 60.000 0.00 0.00 0.00 4.73
2397 2515 1.375523 GAACCCACTCGACCGCATT 60.376 57.895 0.00 0.00 0.00 3.56
2398 2516 1.635663 GAACCCACTCGACCGCATTG 61.636 60.000 0.00 0.00 0.00 2.82
2399 2517 2.047274 CCCACTCGACCGCATTGT 60.047 61.111 0.00 0.00 0.00 2.71
2400 2518 1.671054 CCCACTCGACCGCATTGTT 60.671 57.895 0.00 0.00 0.00 2.83
2401 2519 1.497278 CCACTCGACCGCATTGTTG 59.503 57.895 0.00 0.00 0.00 3.33
2402 2520 1.497278 CACTCGACCGCATTGTTGG 59.503 57.895 0.00 0.00 0.00 3.77
2403 2521 0.948623 CACTCGACCGCATTGTTGGA 60.949 55.000 4.38 0.00 0.00 3.53
2404 2522 0.250124 ACTCGACCGCATTGTTGGAA 60.250 50.000 4.38 0.00 0.00 3.53
2405 2523 0.871722 CTCGACCGCATTGTTGGAAA 59.128 50.000 4.38 0.00 0.00 3.13
2406 2524 1.468520 CTCGACCGCATTGTTGGAAAT 59.531 47.619 4.38 0.00 0.00 2.17
2407 2525 1.883275 TCGACCGCATTGTTGGAAATT 59.117 42.857 4.38 0.00 0.00 1.82
2408 2526 1.984990 CGACCGCATTGTTGGAAATTG 59.015 47.619 4.38 0.00 0.00 2.32
2409 2527 2.336667 GACCGCATTGTTGGAAATTGG 58.663 47.619 4.38 0.00 0.00 3.16
2410 2528 1.691434 ACCGCATTGTTGGAAATTGGT 59.309 42.857 4.38 0.00 0.00 3.67
2411 2529 2.103941 ACCGCATTGTTGGAAATTGGTT 59.896 40.909 4.38 0.00 0.00 3.67
2412 2530 2.479656 CCGCATTGTTGGAAATTGGTTG 59.520 45.455 0.00 0.00 0.00 3.77
2413 2531 2.096318 CGCATTGTTGGAAATTGGTTGC 60.096 45.455 0.00 0.00 0.00 4.17
2414 2532 2.877168 GCATTGTTGGAAATTGGTTGCA 59.123 40.909 0.00 0.00 35.48 4.08
2415 2533 3.303924 GCATTGTTGGAAATTGGTTGCAC 60.304 43.478 0.00 0.00 37.28 4.57
2416 2534 2.215907 TGTTGGAAATTGGTTGCACG 57.784 45.000 0.00 0.00 37.28 5.34
2417 2535 1.478510 TGTTGGAAATTGGTTGCACGT 59.521 42.857 0.00 0.00 37.28 4.49
2418 2536 2.093973 TGTTGGAAATTGGTTGCACGTT 60.094 40.909 0.00 0.00 37.28 3.99
2419 2537 2.215907 TGGAAATTGGTTGCACGTTG 57.784 45.000 0.00 0.00 31.74 4.10
2420 2538 1.202463 TGGAAATTGGTTGCACGTTGG 60.202 47.619 0.00 0.00 31.74 3.77
2421 2539 1.067821 GGAAATTGGTTGCACGTTGGA 59.932 47.619 0.00 0.00 0.00 3.53
2422 2540 2.482142 GGAAATTGGTTGCACGTTGGAA 60.482 45.455 0.00 0.00 0.00 3.53
2423 2541 2.969628 AATTGGTTGCACGTTGGAAA 57.030 40.000 0.00 0.00 26.96 3.13
2424 2542 3.467374 AATTGGTTGCACGTTGGAAAT 57.533 38.095 0.00 0.00 26.96 2.17
2425 2543 4.592485 AATTGGTTGCACGTTGGAAATA 57.408 36.364 0.00 0.00 26.96 1.40
2426 2544 4.592485 ATTGGTTGCACGTTGGAAATAA 57.408 36.364 0.00 0.00 26.96 1.40
2427 2545 4.386867 TTGGTTGCACGTTGGAAATAAA 57.613 36.364 0.00 0.00 26.96 1.40
2428 2546 4.386867 TGGTTGCACGTTGGAAATAAAA 57.613 36.364 0.00 0.00 26.96 1.52
2429 2547 4.755411 TGGTTGCACGTTGGAAATAAAAA 58.245 34.783 0.00 0.00 26.96 1.94
2444 2562 2.984871 AAAAATGGGCGTGCAACAC 58.015 47.368 0.00 0.00 35.74 3.32
2445 2563 0.176680 AAAAATGGGCGTGCAACACA 59.823 45.000 0.00 0.00 35.74 3.72
2446 2564 0.176680 AAAATGGGCGTGCAACACAA 59.823 45.000 0.00 0.00 35.74 3.33
2447 2565 0.392336 AAATGGGCGTGCAACACAAT 59.608 45.000 0.00 0.00 35.74 2.71
2448 2566 1.252175 AATGGGCGTGCAACACAATA 58.748 45.000 0.00 0.00 35.74 1.90
2449 2567 0.810648 ATGGGCGTGCAACACAATAG 59.189 50.000 0.00 0.00 35.74 1.73
2450 2568 0.536233 TGGGCGTGCAACACAATAGT 60.536 50.000 0.00 0.00 35.74 2.12
2451 2569 1.270893 TGGGCGTGCAACACAATAGTA 60.271 47.619 0.00 0.00 35.74 1.82
2452 2570 1.129811 GGGCGTGCAACACAATAGTAC 59.870 52.381 0.00 0.00 35.74 2.73
2453 2571 2.073816 GGCGTGCAACACAATAGTACT 58.926 47.619 0.00 0.00 35.74 2.73
2454 2572 2.093783 GGCGTGCAACACAATAGTACTC 59.906 50.000 0.00 0.00 35.74 2.59
2455 2573 2.993899 GCGTGCAACACAATAGTACTCT 59.006 45.455 0.00 0.00 35.74 3.24
2456 2574 3.432252 GCGTGCAACACAATAGTACTCTT 59.568 43.478 0.00 0.00 35.74 2.85
2457 2575 4.084013 GCGTGCAACACAATAGTACTCTTT 60.084 41.667 0.00 0.00 35.74 2.52
2458 2576 5.609088 CGTGCAACACAATAGTACTCTTTC 58.391 41.667 0.00 0.00 35.74 2.62
2459 2577 5.405571 CGTGCAACACAATAGTACTCTTTCT 59.594 40.000 0.00 0.00 35.74 2.52
2460 2578 6.593978 GTGCAACACAATAGTACTCTTTCTG 58.406 40.000 0.00 0.00 36.32 3.02
2461 2579 6.202954 GTGCAACACAATAGTACTCTTTCTGT 59.797 38.462 0.00 0.00 36.32 3.41
2462 2580 6.423905 TGCAACACAATAGTACTCTTTCTGTC 59.576 38.462 0.00 0.00 0.00 3.51
2463 2581 6.128526 GCAACACAATAGTACTCTTTCTGTCC 60.129 42.308 0.00 0.00 0.00 4.02
2464 2582 6.038997 ACACAATAGTACTCTTTCTGTCCC 57.961 41.667 0.00 0.00 0.00 4.46
2465 2583 5.542635 ACACAATAGTACTCTTTCTGTCCCA 59.457 40.000 0.00 0.00 0.00 4.37
2466 2584 6.042781 ACACAATAGTACTCTTTCTGTCCCAA 59.957 38.462 0.00 0.00 0.00 4.12
2467 2585 6.934645 CACAATAGTACTCTTTCTGTCCCAAA 59.065 38.462 0.00 0.00 0.00 3.28
2468 2586 7.444183 CACAATAGTACTCTTTCTGTCCCAAAA 59.556 37.037 0.00 0.00 0.00 2.44
2469 2587 8.164070 ACAATAGTACTCTTTCTGTCCCAAAAT 58.836 33.333 0.00 0.00 0.00 1.82
2470 2588 9.667107 CAATAGTACTCTTTCTGTCCCAAAATA 57.333 33.333 0.00 0.00 0.00 1.40
2472 2590 9.892130 ATAGTACTCTTTCTGTCCCAAAATAAG 57.108 33.333 0.00 0.00 0.00 1.73
2473 2591 7.746703 AGTACTCTTTCTGTCCCAAAATAAGT 58.253 34.615 0.00 0.00 0.00 2.24
2474 2592 6.884280 ACTCTTTCTGTCCCAAAATAAGTG 57.116 37.500 0.00 0.00 0.00 3.16
2475 2593 6.365520 ACTCTTTCTGTCCCAAAATAAGTGT 58.634 36.000 0.00 0.00 0.00 3.55
2476 2594 6.486993 ACTCTTTCTGTCCCAAAATAAGTGTC 59.513 38.462 0.00 0.00 0.00 3.67
2477 2595 6.601332 TCTTTCTGTCCCAAAATAAGTGTCT 58.399 36.000 0.00 0.00 0.00 3.41
2478 2596 6.710744 TCTTTCTGTCCCAAAATAAGTGTCTC 59.289 38.462 0.00 0.00 0.00 3.36
2479 2597 5.560722 TCTGTCCCAAAATAAGTGTCTCA 57.439 39.130 0.00 0.00 0.00 3.27
2480 2598 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
2481 2599 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
2482 2600 4.513692 TGTCCCAAAATAAGTGTCTCAACG 59.486 41.667 0.00 0.00 0.00 4.10
2483 2601 4.514066 GTCCCAAAATAAGTGTCTCAACGT 59.486 41.667 0.00 0.00 0.00 3.99
2484 2602 5.008316 GTCCCAAAATAAGTGTCTCAACGTT 59.992 40.000 0.00 0.00 0.00 3.99
2485 2603 5.008217 TCCCAAAATAAGTGTCTCAACGTTG 59.992 40.000 22.35 22.35 0.00 4.10
2486 2604 5.220970 CCCAAAATAAGTGTCTCAACGTTGT 60.221 40.000 26.47 9.20 0.00 3.32
2487 2605 6.017770 CCCAAAATAAGTGTCTCAACGTTGTA 60.018 38.462 26.47 14.17 0.00 2.41
2488 2606 6.849305 CCAAAATAAGTGTCTCAACGTTGTAC 59.151 38.462 26.47 23.65 0.00 2.90
2489 2607 7.254658 CCAAAATAAGTGTCTCAACGTTGTACT 60.255 37.037 26.47 21.22 0.00 2.73
2490 2608 6.764877 AATAAGTGTCTCAACGTTGTACTG 57.235 37.500 26.47 15.32 0.00 2.74
2491 2609 4.380841 AAGTGTCTCAACGTTGTACTGA 57.619 40.909 26.47 17.10 0.00 3.41
2492 2610 3.966154 AGTGTCTCAACGTTGTACTGAG 58.034 45.455 26.47 16.87 38.34 3.35
2493 2611 3.630769 AGTGTCTCAACGTTGTACTGAGA 59.369 43.478 26.47 18.86 42.49 3.27
2494 2612 4.278669 AGTGTCTCAACGTTGTACTGAGAT 59.721 41.667 26.47 5.68 45.38 2.75
2495 2613 4.982916 GTGTCTCAACGTTGTACTGAGATT 59.017 41.667 26.47 0.00 45.38 2.40
2496 2614 4.982295 TGTCTCAACGTTGTACTGAGATTG 59.018 41.667 26.47 0.00 45.38 2.67
2497 2615 5.220381 GTCTCAACGTTGTACTGAGATTGA 58.780 41.667 26.47 3.14 45.38 2.57
2498 2616 5.117287 GTCTCAACGTTGTACTGAGATTGAC 59.883 44.000 26.47 14.88 45.38 3.18
2499 2617 4.939271 TCAACGTTGTACTGAGATTGACA 58.061 39.130 26.47 0.26 0.00 3.58
2500 2618 4.743151 TCAACGTTGTACTGAGATTGACAC 59.257 41.667 26.47 0.00 0.00 3.67
2501 2619 4.316205 ACGTTGTACTGAGATTGACACA 57.684 40.909 0.00 0.00 0.00 3.72
2502 2620 4.049186 ACGTTGTACTGAGATTGACACAC 58.951 43.478 0.00 0.00 0.00 3.82
2503 2621 4.202121 ACGTTGTACTGAGATTGACACACT 60.202 41.667 0.00 0.00 0.00 3.55
2504 2622 4.745125 CGTTGTACTGAGATTGACACACTT 59.255 41.667 0.00 0.00 0.00 3.16
2505 2623 5.918576 CGTTGTACTGAGATTGACACACTTA 59.081 40.000 0.00 0.00 0.00 2.24
2506 2624 6.586463 CGTTGTACTGAGATTGACACACTTAT 59.414 38.462 0.00 0.00 0.00 1.73
2507 2625 7.116376 CGTTGTACTGAGATTGACACACTTATT 59.884 37.037 0.00 0.00 0.00 1.40
2508 2626 8.774586 GTTGTACTGAGATTGACACACTTATTT 58.225 33.333 0.00 0.00 0.00 1.40
2509 2627 8.902540 TGTACTGAGATTGACACACTTATTTT 57.097 30.769 0.00 0.00 0.00 1.82
2510 2628 8.773645 TGTACTGAGATTGACACACTTATTTTG 58.226 33.333 0.00 0.00 0.00 2.44
2511 2629 7.206981 ACTGAGATTGACACACTTATTTTGG 57.793 36.000 0.00 0.00 0.00 3.28
2512 2630 6.207417 ACTGAGATTGACACACTTATTTTGGG 59.793 38.462 0.00 0.00 0.00 4.12
2513 2631 6.303054 TGAGATTGACACACTTATTTTGGGA 58.697 36.000 0.00 0.00 0.00 4.37
2514 2632 6.206634 TGAGATTGACACACTTATTTTGGGAC 59.793 38.462 0.00 0.00 0.00 4.46
2515 2633 4.822036 TTGACACACTTATTTTGGGACG 57.178 40.909 0.00 0.00 0.00 4.79
2516 2634 3.142951 TGACACACTTATTTTGGGACGG 58.857 45.455 0.00 0.00 0.00 4.79
2517 2635 3.181453 TGACACACTTATTTTGGGACGGA 60.181 43.478 0.00 0.00 0.00 4.69
2518 2636 3.408634 ACACACTTATTTTGGGACGGAG 58.591 45.455 0.00 0.00 0.00 4.63
2519 2637 2.747446 CACACTTATTTTGGGACGGAGG 59.253 50.000 0.00 0.00 0.00 4.30
2520 2638 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2521 2639 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2522 2640 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2523 2641 2.257391 TATTTTGGGACGGAGGGAGA 57.743 50.000 0.00 0.00 0.00 3.71
2524 2642 1.368374 ATTTTGGGACGGAGGGAGAA 58.632 50.000 0.00 0.00 0.00 2.87
2525 2643 0.690762 TTTTGGGACGGAGGGAGAAG 59.309 55.000 0.00 0.00 0.00 2.85
2526 2644 0.178915 TTTGGGACGGAGGGAGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
2527 2645 0.042731 TTGGGACGGAGGGAGAAGAT 59.957 55.000 0.00 0.00 0.00 2.40
2528 2646 0.931468 TGGGACGGAGGGAGAAGATA 59.069 55.000 0.00 0.00 0.00 1.98
2529 2647 1.330234 GGGACGGAGGGAGAAGATAC 58.670 60.000 0.00 0.00 0.00 2.24
2530 2648 1.411216 GGGACGGAGGGAGAAGATACA 60.411 57.143 0.00 0.00 0.00 2.29
2531 2649 2.599677 GGACGGAGGGAGAAGATACAT 58.400 52.381 0.00 0.00 0.00 2.29
2532 2650 2.297597 GGACGGAGGGAGAAGATACATG 59.702 54.545 0.00 0.00 0.00 3.21
2533 2651 3.223435 GACGGAGGGAGAAGATACATGA 58.777 50.000 0.00 0.00 0.00 3.07
2534 2652 3.637229 GACGGAGGGAGAAGATACATGAA 59.363 47.826 0.00 0.00 0.00 2.57
2535 2653 4.227197 ACGGAGGGAGAAGATACATGAAT 58.773 43.478 0.00 0.00 0.00 2.57
2536 2654 5.394738 ACGGAGGGAGAAGATACATGAATA 58.605 41.667 0.00 0.00 0.00 1.75
2537 2655 5.478679 ACGGAGGGAGAAGATACATGAATAG 59.521 44.000 0.00 0.00 0.00 1.73
2538 2656 5.712446 CGGAGGGAGAAGATACATGAATAGA 59.288 44.000 0.00 0.00 0.00 1.98
2539 2657 6.127758 CGGAGGGAGAAGATACATGAATAGAG 60.128 46.154 0.00 0.00 0.00 2.43
2540 2658 6.723977 GGAGGGAGAAGATACATGAATAGAGT 59.276 42.308 0.00 0.00 0.00 3.24
2541 2659 7.309744 GGAGGGAGAAGATACATGAATAGAGTG 60.310 44.444 0.00 0.00 0.00 3.51
2542 2660 7.072562 AGGGAGAAGATACATGAATAGAGTGT 58.927 38.462 0.00 0.00 0.00 3.55
2543 2661 7.566879 AGGGAGAAGATACATGAATAGAGTGTT 59.433 37.037 0.00 0.00 0.00 3.32
2544 2662 7.655328 GGGAGAAGATACATGAATAGAGTGTTG 59.345 40.741 0.00 0.00 0.00 3.33
2545 2663 8.200792 GGAGAAGATACATGAATAGAGTGTTGT 58.799 37.037 0.00 0.00 0.00 3.32
2546 2664 8.939201 AGAAGATACATGAATAGAGTGTTGTG 57.061 34.615 0.00 0.00 0.00 3.33
2547 2665 8.535335 AGAAGATACATGAATAGAGTGTTGTGT 58.465 33.333 0.00 0.00 0.00 3.72
2548 2666 8.709386 AAGATACATGAATAGAGTGTTGTGTC 57.291 34.615 0.00 0.00 0.00 3.67
2549 2667 7.840931 AGATACATGAATAGAGTGTTGTGTCA 58.159 34.615 0.00 0.00 30.52 3.58
2550 2668 8.481314 AGATACATGAATAGAGTGTTGTGTCAT 58.519 33.333 0.00 0.00 30.52 3.06
2551 2669 6.974932 ACATGAATAGAGTGTTGTGTCATC 57.025 37.500 0.00 0.00 0.00 2.92
2552 2670 6.705302 ACATGAATAGAGTGTTGTGTCATCT 58.295 36.000 0.00 0.00 0.00 2.90
2553 2671 7.164122 ACATGAATAGAGTGTTGTGTCATCTT 58.836 34.615 0.00 0.00 0.00 2.40
2554 2672 8.314021 ACATGAATAGAGTGTTGTGTCATCTTA 58.686 33.333 0.00 0.00 0.00 2.10
2555 2673 8.815189 CATGAATAGAGTGTTGTGTCATCTTAG 58.185 37.037 0.00 0.00 0.00 2.18
2556 2674 8.122472 TGAATAGAGTGTTGTGTCATCTTAGA 57.878 34.615 0.00 0.00 0.00 2.10
2557 2675 8.585018 TGAATAGAGTGTTGTGTCATCTTAGAA 58.415 33.333 0.00 0.00 0.00 2.10
2558 2676 9.593134 GAATAGAGTGTTGTGTCATCTTAGAAT 57.407 33.333 0.00 0.00 0.00 2.40
2561 2679 7.324178 AGAGTGTTGTGTCATCTTAGAATACC 58.676 38.462 0.00 0.00 0.00 2.73
2562 2680 7.004555 AGTGTTGTGTCATCTTAGAATACCA 57.995 36.000 0.00 0.00 0.00 3.25
2563 2681 6.874134 AGTGTTGTGTCATCTTAGAATACCAC 59.126 38.462 0.00 0.00 0.00 4.16
2564 2682 6.092259 GTGTTGTGTCATCTTAGAATACCACC 59.908 42.308 0.00 0.00 0.00 4.61
2565 2683 6.170506 GTTGTGTCATCTTAGAATACCACCA 58.829 40.000 0.00 0.00 0.00 4.17
2566 2684 5.730550 TGTGTCATCTTAGAATACCACCAC 58.269 41.667 0.00 0.00 0.00 4.16
2567 2685 5.247337 TGTGTCATCTTAGAATACCACCACA 59.753 40.000 0.00 0.00 0.00 4.17
2568 2686 6.070251 TGTGTCATCTTAGAATACCACCACAT 60.070 38.462 0.00 0.00 0.00 3.21
2569 2687 6.258727 GTGTCATCTTAGAATACCACCACATG 59.741 42.308 0.00 0.00 0.00 3.21
2570 2688 6.156083 TGTCATCTTAGAATACCACCACATGA 59.844 38.462 0.00 0.00 0.00 3.07
2571 2689 7.147497 TGTCATCTTAGAATACCACCACATGAT 60.147 37.037 0.00 0.00 0.00 2.45
2572 2690 7.716998 GTCATCTTAGAATACCACCACATGATT 59.283 37.037 0.00 0.00 0.00 2.57
2573 2691 7.716560 TCATCTTAGAATACCACCACATGATTG 59.283 37.037 0.00 0.00 0.00 2.67
2574 2692 5.822519 TCTTAGAATACCACCACATGATTGC 59.177 40.000 0.00 0.00 0.00 3.56
2575 2693 3.966979 AGAATACCACCACATGATTGCA 58.033 40.909 0.00 0.00 0.00 4.08
2576 2694 3.696051 AGAATACCACCACATGATTGCAC 59.304 43.478 0.00 0.00 0.00 4.57
2577 2695 2.575805 TACCACCACATGATTGCACA 57.424 45.000 0.00 0.00 0.00 4.57
2578 2696 1.702182 ACCACCACATGATTGCACAA 58.298 45.000 0.00 0.00 0.00 3.33
2579 2697 2.250031 ACCACCACATGATTGCACAAT 58.750 42.857 0.00 0.00 0.00 2.71
2580 2698 3.429492 ACCACCACATGATTGCACAATA 58.571 40.909 0.00 0.00 0.00 1.90
2675 2799 2.539081 GGCACCTCCTCCCACCTTT 61.539 63.158 0.00 0.00 0.00 3.11
2727 2860 4.461081 CCCCACTTCATCGGTTTATTTTCA 59.539 41.667 0.00 0.00 0.00 2.69
2747 2880 2.029380 CACGTCACCCTCTCACACAATA 60.029 50.000 0.00 0.00 0.00 1.90
2781 2914 6.768483 TGAACAGATCAGAACTTTCCATACA 58.232 36.000 0.00 0.00 33.04 2.29
2785 2918 6.014242 ACAGATCAGAACTTTCCATACAGACA 60.014 38.462 0.00 0.00 0.00 3.41
2928 3062 8.461222 TCAGAAAAATCGCTCAATCACATTAAT 58.539 29.630 0.00 0.00 0.00 1.40
2979 3113 8.869109 TCAATCTCCAAACAAAGGAAACAATAT 58.131 29.630 0.00 0.00 34.08 1.28
2990 3124 6.749036 AAGGAAACAATATATCGAGGGAGT 57.251 37.500 0.00 0.00 0.00 3.85
3004 3138 9.810870 ATATCGAGGGAGTAGTAAATAAACTCT 57.189 33.333 0.00 0.00 39.65 3.24
3027 3161 9.149225 CTCTCTTTCTTATGGCATGTATATGAC 57.851 37.037 10.98 0.13 43.00 3.06
3040 3174 4.641868 TGTATATGACCTTCCCTTCCCTT 58.358 43.478 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.319728 CTGGAGAGCGTATGGGGATG 59.680 60.000 0.00 0.00 0.00 3.51
1 2 0.188587 TCTGGAGAGCGTATGGGGAT 59.811 55.000 0.00 0.00 0.00 3.85
9 10 0.318762 GAGTTTGGTCTGGAGAGCGT 59.681 55.000 1.64 0.00 44.88 5.07
10 11 0.605589 AGAGTTTGGTCTGGAGAGCG 59.394 55.000 1.64 0.00 44.88 5.03
14 15 1.902508 TGGCTAGAGTTTGGTCTGGAG 59.097 52.381 0.00 0.00 0.00 3.86
15 16 1.623811 GTGGCTAGAGTTTGGTCTGGA 59.376 52.381 0.00 0.00 0.00 3.86
18 19 1.903183 GGAGTGGCTAGAGTTTGGTCT 59.097 52.381 0.00 0.00 0.00 3.85
27 28 3.567397 GGAGTAGAATGGAGTGGCTAGA 58.433 50.000 0.00 0.00 0.00 2.43
40 41 0.838987 AGTTTGGGGGCGGAGTAGAA 60.839 55.000 0.00 0.00 0.00 2.10
43 44 2.295602 GGAGTTTGGGGGCGGAGTA 61.296 63.158 0.00 0.00 0.00 2.59
102 108 1.617947 GGACTGGCCGGAGTCAGATT 61.618 60.000 21.41 4.65 43.70 2.40
114 120 1.079405 TCGACGGATTTGGACTGGC 60.079 57.895 0.00 0.00 0.00 4.85
188 194 3.462678 GTCCTCCCAGGAGCGACC 61.463 72.222 17.74 0.00 46.90 4.79
197 203 2.599281 TCGAACGCAGTCCTCCCA 60.599 61.111 0.00 0.00 45.00 4.37
210 216 0.613260 CAGATCCCCCAACAGTCGAA 59.387 55.000 0.00 0.00 0.00 3.71
211 221 1.899437 GCAGATCCCCCAACAGTCGA 61.899 60.000 0.00 0.00 0.00 4.20
216 226 1.635817 GCTAGGCAGATCCCCCAACA 61.636 60.000 2.45 0.00 34.51 3.33
217 227 1.149401 GCTAGGCAGATCCCCCAAC 59.851 63.158 2.45 0.00 34.51 3.77
218 228 1.004758 AGCTAGGCAGATCCCCCAA 59.995 57.895 2.45 0.00 34.51 4.12
219 229 1.460305 GAGCTAGGCAGATCCCCCA 60.460 63.158 0.00 0.00 30.64 4.96
233 243 0.729116 CCACGCAATGAATTCGAGCT 59.271 50.000 12.68 0.00 0.00 4.09
236 246 1.800032 GCCCACGCAATGAATTCGA 59.200 52.632 0.04 0.00 34.03 3.71
264 274 1.129917 CAGCCCTGATGGATCTGAGT 58.870 55.000 0.00 0.00 36.52 3.41
274 284 1.133575 CCACAATGATCCAGCCCTGAT 60.134 52.381 0.00 0.00 0.00 2.90
275 285 0.256752 CCACAATGATCCAGCCCTGA 59.743 55.000 0.00 0.00 0.00 3.86
362 398 1.215673 TCGGGCACTCTTATCCTCTCT 59.784 52.381 0.00 0.00 0.00 3.10
397 433 0.176449 CTCATCTGCCACCATGTCGA 59.824 55.000 0.00 0.00 0.00 4.20
410 446 3.147595 TACGCTGCCGCCTCATCT 61.148 61.111 0.00 0.00 38.22 2.90
412 448 4.873129 CGTACGCTGCCGCCTCAT 62.873 66.667 0.52 0.00 38.22 2.90
434 497 1.794714 GGATGCCTTCCTCCTCTACA 58.205 55.000 0.00 0.00 41.78 2.74
465 528 3.225104 TCCTTTGTTGCTGCTTCTTCAT 58.775 40.909 0.00 0.00 0.00 2.57
467 530 3.181487 TGTTCCTTTGTTGCTGCTTCTTC 60.181 43.478 0.00 0.00 0.00 2.87
482 545 1.300697 GAGGACGCGTGTGTTCCTT 60.301 57.895 20.70 0.00 0.00 3.36
496 559 2.688507 GATTTTGCTCTCGTGTGAGGA 58.311 47.619 1.61 0.00 42.79 3.71
503 566 0.392998 ATGCCCGATTTTGCTCTCGT 60.393 50.000 0.00 0.00 33.11 4.18
535 598 1.415672 TTCTTTGGAGGGCAGTCCGT 61.416 55.000 1.13 0.00 39.81 4.69
546 610 1.553690 CCGCCCTCCTCTTCTTTGGA 61.554 60.000 0.00 0.00 0.00 3.53
566 635 3.998672 GAGTTGTCCGACCCGCCA 61.999 66.667 0.00 0.00 0.00 5.69
568 637 1.139095 CTAGAGTTGTCCGACCCGC 59.861 63.158 0.00 0.00 0.00 6.13
584 653 1.506718 CTGGAGCTGTTCGTCGCTA 59.493 57.895 0.00 0.00 36.45 4.26
585 654 2.259818 CTGGAGCTGTTCGTCGCT 59.740 61.111 0.00 0.00 39.61 4.93
636 706 1.600636 CCTTGCCGTCCTTCTTGCA 60.601 57.895 0.00 0.00 0.00 4.08
637 707 2.335712 CCCTTGCCGTCCTTCTTGC 61.336 63.158 0.00 0.00 0.00 4.01
639 709 2.034221 GCCCTTGCCGTCCTTCTT 59.966 61.111 0.00 0.00 0.00 2.52
661 731 1.073199 CGACTGCCCTTGTCCCTTT 59.927 57.895 0.00 0.00 0.00 3.11
662 732 2.147387 ACGACTGCCCTTGTCCCTT 61.147 57.895 0.00 0.00 0.00 3.95
664 734 2.358737 CACGACTGCCCTTGTCCC 60.359 66.667 0.00 0.00 0.00 4.46
667 737 1.003355 CATCCACGACTGCCCTTGT 60.003 57.895 0.00 0.00 0.00 3.16
719 789 9.850628 CATGTCATCAGACTAACAAAATTTGAT 57.149 29.630 13.19 2.98 45.20 2.57
720 790 8.849168 ACATGTCATCAGACTAACAAAATTTGA 58.151 29.630 13.19 0.00 45.20 2.69
730 800 5.423290 ACATCAGGACATGTCATCAGACTAA 59.577 40.000 26.47 0.50 45.20 2.24
736 806 5.221322 GCTACTACATCAGGACATGTCATCA 60.221 44.000 26.47 7.49 38.07 3.07
741 811 2.362397 CGGCTACTACATCAGGACATGT 59.638 50.000 0.00 0.00 40.28 3.21
748 818 3.627732 ATCGTTCGGCTACTACATCAG 57.372 47.619 0.00 0.00 0.00 2.90
751 821 4.337555 ACACTAATCGTTCGGCTACTACAT 59.662 41.667 0.00 0.00 0.00 2.29
759 829 0.793861 TGCAACACTAATCGTTCGGC 59.206 50.000 0.00 0.00 0.00 5.54
761 831 3.722555 ACATGCAACACTAATCGTTCG 57.277 42.857 0.00 0.00 0.00 3.95
792 862 9.193806 ACATCTCAATTATAGCAAACCTCAAAT 57.806 29.630 0.00 0.00 0.00 2.32
793 863 8.461222 CACATCTCAATTATAGCAAACCTCAAA 58.539 33.333 0.00 0.00 0.00 2.69
794 864 7.611467 ACACATCTCAATTATAGCAAACCTCAA 59.389 33.333 0.00 0.00 0.00 3.02
795 865 7.066163 CACACATCTCAATTATAGCAAACCTCA 59.934 37.037 0.00 0.00 0.00 3.86
796 866 7.412853 CACACATCTCAATTATAGCAAACCTC 58.587 38.462 0.00 0.00 0.00 3.85
797 867 6.319658 CCACACATCTCAATTATAGCAAACCT 59.680 38.462 0.00 0.00 0.00 3.50
798 868 6.460123 CCCACACATCTCAATTATAGCAAACC 60.460 42.308 0.00 0.00 0.00 3.27
799 869 6.318648 TCCCACACATCTCAATTATAGCAAAC 59.681 38.462 0.00 0.00 0.00 2.93
800 870 6.422333 TCCCACACATCTCAATTATAGCAAA 58.578 36.000 0.00 0.00 0.00 3.68
801 871 6.000246 TCCCACACATCTCAATTATAGCAA 58.000 37.500 0.00 0.00 0.00 3.91
802 872 5.628797 TCCCACACATCTCAATTATAGCA 57.371 39.130 0.00 0.00 0.00 3.49
803 873 6.233434 TCATCCCACACATCTCAATTATAGC 58.767 40.000 0.00 0.00 0.00 2.97
804 874 8.681486 TTTCATCCCACACATCTCAATTATAG 57.319 34.615 0.00 0.00 0.00 1.31
805 875 9.645128 ATTTTCATCCCACACATCTCAATTATA 57.355 29.630 0.00 0.00 0.00 0.98
806 876 7.959658 TTTTCATCCCACACATCTCAATTAT 57.040 32.000 0.00 0.00 0.00 1.28
807 877 7.959658 ATTTTCATCCCACACATCTCAATTA 57.040 32.000 0.00 0.00 0.00 1.40
808 878 6.862469 ATTTTCATCCCACACATCTCAATT 57.138 33.333 0.00 0.00 0.00 2.32
809 879 6.862469 AATTTTCATCCCACACATCTCAAT 57.138 33.333 0.00 0.00 0.00 2.57
810 880 6.267242 TCAAATTTTCATCCCACACATCTCAA 59.733 34.615 0.00 0.00 0.00 3.02
811 881 5.774184 TCAAATTTTCATCCCACACATCTCA 59.226 36.000 0.00 0.00 0.00 3.27
812 882 6.271488 TCAAATTTTCATCCCACACATCTC 57.729 37.500 0.00 0.00 0.00 2.75
813 883 6.268387 ACTTCAAATTTTCATCCCACACATCT 59.732 34.615 0.00 0.00 0.00 2.90
814 884 6.366877 CACTTCAAATTTTCATCCCACACATC 59.633 38.462 0.00 0.00 0.00 3.06
815 885 6.183360 ACACTTCAAATTTTCATCCCACACAT 60.183 34.615 0.00 0.00 0.00 3.21
816 886 5.128499 ACACTTCAAATTTTCATCCCACACA 59.872 36.000 0.00 0.00 0.00 3.72
817 887 5.600696 ACACTTCAAATTTTCATCCCACAC 58.399 37.500 0.00 0.00 0.00 3.82
818 888 5.867903 ACACTTCAAATTTTCATCCCACA 57.132 34.783 0.00 0.00 0.00 4.17
819 889 5.863935 GCTACACTTCAAATTTTCATCCCAC 59.136 40.000 0.00 0.00 0.00 4.61
820 890 5.047377 GGCTACACTTCAAATTTTCATCCCA 60.047 40.000 0.00 0.00 0.00 4.37
821 891 5.410924 GGCTACACTTCAAATTTTCATCCC 58.589 41.667 0.00 0.00 0.00 3.85
822 892 5.095490 CGGCTACACTTCAAATTTTCATCC 58.905 41.667 0.00 0.00 0.00 3.51
823 893 5.938322 TCGGCTACACTTCAAATTTTCATC 58.062 37.500 0.00 0.00 0.00 2.92
824 894 5.957842 TCGGCTACACTTCAAATTTTCAT 57.042 34.783 0.00 0.00 0.00 2.57
825 895 5.471797 TGATCGGCTACACTTCAAATTTTCA 59.528 36.000 0.00 0.00 0.00 2.69
826 896 5.938322 TGATCGGCTACACTTCAAATTTTC 58.062 37.500 0.00 0.00 0.00 2.29
827 897 5.619981 GCTGATCGGCTACACTTCAAATTTT 60.620 40.000 19.63 0.00 0.00 1.82
828 898 4.142600 GCTGATCGGCTACACTTCAAATTT 60.143 41.667 19.63 0.00 0.00 1.82
829 899 3.375299 GCTGATCGGCTACACTTCAAATT 59.625 43.478 19.63 0.00 0.00 1.82
830 900 2.939103 GCTGATCGGCTACACTTCAAAT 59.061 45.455 19.63 0.00 0.00 2.32
831 901 2.346803 GCTGATCGGCTACACTTCAAA 58.653 47.619 19.63 0.00 0.00 2.69
832 902 1.735700 CGCTGATCGGCTACACTTCAA 60.736 52.381 23.71 0.00 33.78 2.69
833 903 0.179137 CGCTGATCGGCTACACTTCA 60.179 55.000 23.71 0.00 33.78 3.02
834 904 0.179134 ACGCTGATCGGCTACACTTC 60.179 55.000 23.71 0.00 43.86 3.01
835 905 0.246635 AACGCTGATCGGCTACACTT 59.753 50.000 23.71 4.95 43.86 3.16
836 906 0.246635 AAACGCTGATCGGCTACACT 59.753 50.000 23.71 1.64 43.86 3.55
837 907 1.076332 AAAACGCTGATCGGCTACAC 58.924 50.000 23.71 0.00 43.86 2.90
838 908 2.536365 CTAAAACGCTGATCGGCTACA 58.464 47.619 23.71 4.28 43.86 2.74
839 909 1.859080 CCTAAAACGCTGATCGGCTAC 59.141 52.381 23.71 0.00 43.86 3.58
840 910 1.202486 CCCTAAAACGCTGATCGGCTA 60.202 52.381 23.71 8.79 43.86 3.93
841 911 0.462047 CCCTAAAACGCTGATCGGCT 60.462 55.000 23.71 8.05 43.86 5.52
842 912 2.014594 CCCTAAAACGCTGATCGGC 58.985 57.895 17.01 17.01 43.86 5.54
843 913 0.742990 TGCCCTAAAACGCTGATCGG 60.743 55.000 0.00 0.00 43.86 4.18
844 914 0.652592 CTGCCCTAAAACGCTGATCG 59.347 55.000 0.00 0.00 45.38 3.69
845 915 1.017387 CCTGCCCTAAAACGCTGATC 58.983 55.000 0.00 0.00 0.00 2.92
846 916 0.618458 TCCTGCCCTAAAACGCTGAT 59.382 50.000 0.00 0.00 0.00 2.90
847 917 0.618458 ATCCTGCCCTAAAACGCTGA 59.382 50.000 0.00 0.00 0.00 4.26
848 918 1.463674 AATCCTGCCCTAAAACGCTG 58.536 50.000 0.00 0.00 0.00 5.18
849 919 1.818674 CAAATCCTGCCCTAAAACGCT 59.181 47.619 0.00 0.00 0.00 5.07
850 920 1.735700 GCAAATCCTGCCCTAAAACGC 60.736 52.381 0.00 0.00 46.13 4.84
851 921 2.278026 GCAAATCCTGCCCTAAAACG 57.722 50.000 0.00 0.00 46.13 3.60
861 931 1.134098 ACCGGAGTATGGCAAATCCTG 60.134 52.381 9.46 9.23 35.26 3.86
862 932 1.213296 ACCGGAGTATGGCAAATCCT 58.787 50.000 9.46 0.00 35.26 3.24
863 933 1.676006 CAACCGGAGTATGGCAAATCC 59.324 52.381 9.46 0.00 0.00 3.01
864 934 2.365582 ACAACCGGAGTATGGCAAATC 58.634 47.619 9.46 0.00 0.00 2.17
865 935 2.507407 ACAACCGGAGTATGGCAAAT 57.493 45.000 9.46 0.00 0.00 2.32
866 936 3.420300 TTACAACCGGAGTATGGCAAA 57.580 42.857 9.46 0.00 0.00 3.68
867 937 3.420300 TTTACAACCGGAGTATGGCAA 57.580 42.857 9.46 0.00 0.00 4.52
868 938 3.275143 CATTTACAACCGGAGTATGGCA 58.725 45.455 9.46 0.00 0.00 4.92
869 939 2.032924 GCATTTACAACCGGAGTATGGC 59.967 50.000 9.46 10.59 0.00 4.40
870 940 3.541632 AGCATTTACAACCGGAGTATGG 58.458 45.455 9.46 4.74 0.00 2.74
871 941 4.188462 TGAGCATTTACAACCGGAGTATG 58.812 43.478 9.46 9.13 0.00 2.39
872 942 4.481368 TGAGCATTTACAACCGGAGTAT 57.519 40.909 9.46 0.00 0.00 2.12
873 943 3.965379 TGAGCATTTACAACCGGAGTA 57.035 42.857 9.46 8.07 0.00 2.59
874 944 2.851263 TGAGCATTTACAACCGGAGT 57.149 45.000 9.46 9.26 0.00 3.85
875 945 3.365969 GGTTTGAGCATTTACAACCGGAG 60.366 47.826 9.46 1.96 0.00 4.63
876 946 2.554893 GGTTTGAGCATTTACAACCGGA 59.445 45.455 9.46 0.00 0.00 5.14
877 947 2.352323 GGGTTTGAGCATTTACAACCGG 60.352 50.000 0.00 0.00 0.00 5.28
878 948 2.556622 AGGGTTTGAGCATTTACAACCG 59.443 45.455 0.00 0.00 0.00 4.44
879 949 4.765339 ACTAGGGTTTGAGCATTTACAACC 59.235 41.667 0.00 0.00 0.00 3.77
880 950 5.959618 ACTAGGGTTTGAGCATTTACAAC 57.040 39.130 0.00 0.00 0.00 3.32
881 951 5.830991 ACAACTAGGGTTTGAGCATTTACAA 59.169 36.000 0.00 0.00 32.73 2.41
882 952 5.381757 ACAACTAGGGTTTGAGCATTTACA 58.618 37.500 0.00 0.00 32.73 2.41
883 953 5.705905 AGACAACTAGGGTTTGAGCATTTAC 59.294 40.000 0.00 0.00 32.73 2.01
884 954 5.705441 CAGACAACTAGGGTTTGAGCATTTA 59.295 40.000 0.00 0.00 32.73 1.40
885 955 4.520492 CAGACAACTAGGGTTTGAGCATTT 59.480 41.667 0.00 0.00 32.73 2.32
886 956 4.074970 CAGACAACTAGGGTTTGAGCATT 58.925 43.478 0.00 0.00 32.73 3.56
887 957 3.679389 CAGACAACTAGGGTTTGAGCAT 58.321 45.455 0.00 0.00 32.73 3.79
888 958 2.810400 GCAGACAACTAGGGTTTGAGCA 60.810 50.000 10.33 0.00 32.73 4.26
889 959 1.807142 GCAGACAACTAGGGTTTGAGC 59.193 52.381 10.33 3.40 32.73 4.26
890 960 3.126001 TGCAGACAACTAGGGTTTGAG 57.874 47.619 10.33 0.00 32.73 3.02
891 961 3.569194 TTGCAGACAACTAGGGTTTGA 57.431 42.857 10.33 0.00 32.73 2.69
943 1022 5.120399 AGATGTCTGTACTCTCTAGAACCG 58.880 45.833 0.00 0.00 0.00 4.44
945 1024 7.618502 TTGAGATGTCTGTACTCTCTAGAAC 57.381 40.000 9.66 0.00 37.04 3.01
947 1026 6.314152 CGTTTGAGATGTCTGTACTCTCTAGA 59.686 42.308 9.66 0.00 37.04 2.43
949 1028 6.171213 TCGTTTGAGATGTCTGTACTCTCTA 58.829 40.000 9.66 1.19 37.04 2.43
950 1029 5.004448 TCGTTTGAGATGTCTGTACTCTCT 58.996 41.667 9.66 0.00 37.04 3.10
951 1030 5.298197 TCGTTTGAGATGTCTGTACTCTC 57.702 43.478 2.85 2.85 36.72 3.20
952 1031 5.009710 TGTTCGTTTGAGATGTCTGTACTCT 59.990 40.000 0.00 0.00 0.00 3.24
953 1032 5.220381 TGTTCGTTTGAGATGTCTGTACTC 58.780 41.667 0.00 0.00 0.00 2.59
954 1033 5.009710 TCTGTTCGTTTGAGATGTCTGTACT 59.990 40.000 0.00 0.00 0.00 2.73
955 1034 5.117287 GTCTGTTCGTTTGAGATGTCTGTAC 59.883 44.000 0.00 0.00 0.00 2.90
958 1037 3.430218 GGTCTGTTCGTTTGAGATGTCTG 59.570 47.826 0.00 0.00 0.00 3.51
1068 1147 1.966451 GTGGAGCTTTCGGGTGGTG 60.966 63.158 0.00 0.00 0.00 4.17
1074 1153 2.027625 GGTGACGTGGAGCTTTCGG 61.028 63.158 0.00 0.00 0.00 4.30
1139 1218 1.300697 GTGGTCGTCTTCTTGGCGT 60.301 57.895 0.00 0.00 45.15 5.68
1173 1252 2.266689 CCGGTTTTCCCCGTCGAT 59.733 61.111 0.00 0.00 46.66 3.59
1312 1391 4.219944 AGGAATGCGACTGTACTCAAGTAA 59.780 41.667 0.00 0.00 31.52 2.24
1318 1397 3.243134 GGAGTAGGAATGCGACTGTACTC 60.243 52.174 0.00 6.76 36.97 2.59
1340 1419 0.167470 CACAACAATCGGCAGCAGAG 59.833 55.000 0.65 0.00 0.00 3.35
1346 1425 2.593148 ACGGCACAACAATCGGCA 60.593 55.556 0.00 0.00 0.00 5.69
1347 1426 2.126888 CACGGCACAACAATCGGC 60.127 61.111 0.00 0.00 0.00 5.54
1348 1427 0.948623 TCTCACGGCACAACAATCGG 60.949 55.000 0.00 0.00 0.00 4.18
1349 1428 0.163788 GTCTCACGGCACAACAATCG 59.836 55.000 0.00 0.00 0.00 3.34
1350 1429 0.163788 CGTCTCACGGCACAACAATC 59.836 55.000 0.00 0.00 38.08 2.67
1351 1430 1.841663 GCGTCTCACGGCACAACAAT 61.842 55.000 0.00 0.00 42.82 2.71
1353 1432 2.964925 GCGTCTCACGGCACAACA 60.965 61.111 0.00 0.00 42.82 3.33
1354 1433 4.059459 CGCGTCTCACGGCACAAC 62.059 66.667 0.00 0.00 42.82 3.32
1355 1434 4.578898 ACGCGTCTCACGGCACAA 62.579 61.111 5.58 0.00 42.82 3.33
1381 1460 1.648467 GCCCTCACCTGCAATTCGAC 61.648 60.000 0.00 0.00 0.00 4.20
1382 1461 1.377202 GCCCTCACCTGCAATTCGA 60.377 57.895 0.00 0.00 0.00 3.71
1383 1462 2.409870 GGCCCTCACCTGCAATTCG 61.410 63.158 0.00 0.00 0.00 3.34
1485 1567 1.674651 GGGAGCGAAGGGGTCAAAC 60.675 63.158 0.00 0.00 45.03 2.93
1497 1579 0.955919 GACAAACCTTCCAGGGAGCG 60.956 60.000 0.00 0.00 40.58 5.03
1528 1616 1.163554 GGCAAGAAAGTGAGCTCCTG 58.836 55.000 12.15 0.00 0.00 3.86
1534 1622 2.089980 CCATCCAGGCAAGAAAGTGAG 58.910 52.381 0.00 0.00 0.00 3.51
1538 1626 2.490903 CAGAACCATCCAGGCAAGAAAG 59.509 50.000 0.00 0.00 43.14 2.62
1550 1638 2.996621 CGGTCAGAAGTTCAGAACCATC 59.003 50.000 9.85 8.86 0.00 3.51
1572 1660 1.375853 TTACATGGGCACGAGCATGC 61.376 55.000 10.51 10.51 44.61 4.06
1580 1668 3.412386 ACTGAACTCTTTACATGGGCAC 58.588 45.455 0.00 0.00 0.00 5.01
1611 1701 4.040376 GCTAGCTATCACTTGCAAATTGC 58.960 43.478 11.58 11.58 45.29 3.56
1612 1702 5.065602 TCAGCTAGCTATCACTTGCAAATTG 59.934 40.000 18.86 0.54 40.31 2.32
1613 1703 5.188434 TCAGCTAGCTATCACTTGCAAATT 58.812 37.500 18.86 0.00 40.31 1.82
1614 1704 4.774124 TCAGCTAGCTATCACTTGCAAAT 58.226 39.130 18.86 0.00 40.31 2.32
1615 1705 4.206477 TCAGCTAGCTATCACTTGCAAA 57.794 40.909 18.86 0.00 40.31 3.68
1616 1706 3.893326 TCAGCTAGCTATCACTTGCAA 57.107 42.857 18.86 0.00 40.31 4.08
1761 1851 2.698855 TGTAGGCTGGATTCAGAAGC 57.301 50.000 4.75 0.00 43.49 3.86
1851 1941 5.594317 AGGCCTCACAATGGTGTAATTTATC 59.406 40.000 0.00 0.00 45.45 1.75
1863 1953 1.077212 CCCTCCAGGCCTCACAATG 60.077 63.158 0.00 0.00 0.00 2.82
1902 1992 0.734889 GCTCCATGACAATGTTCCCG 59.265 55.000 0.00 0.00 31.27 5.14
1969 2059 6.805713 TGTATGAGCAACAATCTCTCGAATA 58.194 36.000 0.00 0.00 0.00 1.75
1970 2060 5.664457 TGTATGAGCAACAATCTCTCGAAT 58.336 37.500 0.00 0.00 0.00 3.34
2013 2128 4.067896 AGTGTCCTGCAAATAGTTCACAG 58.932 43.478 0.00 0.00 0.00 3.66
2020 2135 4.096532 TCGTAGAGAGTGTCCTGCAAATAG 59.903 45.833 0.00 0.00 0.00 1.73
2089 2204 0.252197 ACTCCTCCGGGCATAACAAC 59.748 55.000 0.00 0.00 0.00 3.32
2257 2372 7.117454 CGACTTACAAGTTAGAACAACAACAG 58.883 38.462 0.00 0.00 39.88 3.16
2261 2376 5.521010 CCACGACTTACAAGTTAGAACAACA 59.479 40.000 0.00 0.00 39.88 3.33
2262 2377 5.521372 ACCACGACTTACAAGTTAGAACAAC 59.479 40.000 0.00 0.00 39.88 3.32
2264 2379 5.266733 ACCACGACTTACAAGTTAGAACA 57.733 39.130 0.00 0.00 39.88 3.18
2265 2380 5.750067 TGAACCACGACTTACAAGTTAGAAC 59.250 40.000 0.00 0.00 39.88 3.01
2307 2425 7.970061 CACAGATGAAACATGGTAGGTTTTATG 59.030 37.037 0.00 0.00 38.50 1.90
2387 2505 1.529226 ATTTCCAACAATGCGGTCGA 58.471 45.000 0.00 0.00 0.00 4.20
2388 2506 1.984990 CAATTTCCAACAATGCGGTCG 59.015 47.619 0.00 0.00 0.00 4.79
2389 2507 2.288763 ACCAATTTCCAACAATGCGGTC 60.289 45.455 0.00 0.00 0.00 4.79
2390 2508 1.691434 ACCAATTTCCAACAATGCGGT 59.309 42.857 0.00 0.00 0.00 5.68
2391 2509 2.453983 ACCAATTTCCAACAATGCGG 57.546 45.000 0.00 0.00 0.00 5.69
2392 2510 2.096318 GCAACCAATTTCCAACAATGCG 60.096 45.455 0.00 0.00 0.00 4.73
2393 2511 2.877168 TGCAACCAATTTCCAACAATGC 59.123 40.909 0.00 0.00 0.00 3.56
2394 2512 3.059733 CGTGCAACCAATTTCCAACAATG 60.060 43.478 0.00 0.00 0.00 2.82
2395 2513 3.129871 CGTGCAACCAATTTCCAACAAT 58.870 40.909 0.00 0.00 0.00 2.71
2396 2514 2.093973 ACGTGCAACCAATTTCCAACAA 60.094 40.909 0.00 0.00 0.00 2.83
2397 2515 1.478510 ACGTGCAACCAATTTCCAACA 59.521 42.857 0.00 0.00 0.00 3.33
2398 2516 2.217429 ACGTGCAACCAATTTCCAAC 57.783 45.000 0.00 0.00 0.00 3.77
2399 2517 2.544685 CAACGTGCAACCAATTTCCAA 58.455 42.857 0.00 0.00 0.00 3.53
2400 2518 1.202463 CCAACGTGCAACCAATTTCCA 60.202 47.619 0.00 0.00 0.00 3.53
2401 2519 1.067821 TCCAACGTGCAACCAATTTCC 59.932 47.619 0.00 0.00 0.00 3.13
2402 2520 2.500509 TCCAACGTGCAACCAATTTC 57.499 45.000 0.00 0.00 0.00 2.17
2403 2521 2.969628 TTCCAACGTGCAACCAATTT 57.030 40.000 0.00 0.00 0.00 1.82
2404 2522 2.969628 TTTCCAACGTGCAACCAATT 57.030 40.000 0.00 0.00 0.00 2.32
2405 2523 4.592485 TTATTTCCAACGTGCAACCAAT 57.408 36.364 0.00 0.00 0.00 3.16
2406 2524 4.386867 TTTATTTCCAACGTGCAACCAA 57.613 36.364 0.00 0.00 0.00 3.67
2407 2525 4.386867 TTTTATTTCCAACGTGCAACCA 57.613 36.364 0.00 0.00 0.00 3.67
2426 2544 0.176680 TGTGTTGCACGCCCATTTTT 59.823 45.000 0.00 0.00 37.14 1.94
2427 2545 0.176680 TTGTGTTGCACGCCCATTTT 59.823 45.000 0.00 0.00 37.14 1.82
2428 2546 0.392336 ATTGTGTTGCACGCCCATTT 59.608 45.000 0.00 0.00 37.14 2.32
2429 2547 1.202114 CTATTGTGTTGCACGCCCATT 59.798 47.619 0.00 0.00 37.14 3.16
2430 2548 0.810648 CTATTGTGTTGCACGCCCAT 59.189 50.000 0.00 0.00 37.14 4.00
2431 2549 0.536233 ACTATTGTGTTGCACGCCCA 60.536 50.000 0.00 0.00 37.14 5.36
2432 2550 1.129811 GTACTATTGTGTTGCACGCCC 59.870 52.381 0.00 0.00 37.14 6.13
2433 2551 2.073816 AGTACTATTGTGTTGCACGCC 58.926 47.619 0.00 0.00 37.14 5.68
2434 2552 2.993899 AGAGTACTATTGTGTTGCACGC 59.006 45.455 0.00 0.00 37.14 5.34
2435 2553 5.405571 AGAAAGAGTACTATTGTGTTGCACG 59.594 40.000 2.98 0.00 37.14 5.34
2436 2554 6.202954 ACAGAAAGAGTACTATTGTGTTGCAC 59.797 38.462 14.41 0.00 27.36 4.57
2437 2555 6.288294 ACAGAAAGAGTACTATTGTGTTGCA 58.712 36.000 14.41 0.00 27.36 4.08
2438 2556 6.128526 GGACAGAAAGAGTACTATTGTGTTGC 60.129 42.308 18.76 10.82 31.60 4.17
2439 2557 6.369065 GGGACAGAAAGAGTACTATTGTGTTG 59.631 42.308 18.76 11.25 31.60 3.33
2440 2558 6.042781 TGGGACAGAAAGAGTACTATTGTGTT 59.957 38.462 18.76 8.14 31.60 3.32
2441 2559 5.542635 TGGGACAGAAAGAGTACTATTGTGT 59.457 40.000 18.14 18.14 33.80 3.72
2442 2560 6.037786 TGGGACAGAAAGAGTACTATTGTG 57.962 41.667 2.98 9.55 0.00 3.33
2443 2561 6.681729 TTGGGACAGAAAGAGTACTATTGT 57.318 37.500 2.98 0.00 42.39 2.71
2444 2562 7.979444 TTTTGGGACAGAAAGAGTACTATTG 57.021 36.000 2.98 0.00 42.39 1.90
2446 2564 9.892130 CTTATTTTGGGACAGAAAGAGTACTAT 57.108 33.333 0.00 0.00 42.39 2.12
2447 2565 8.877195 ACTTATTTTGGGACAGAAAGAGTACTA 58.123 33.333 0.00 0.00 42.39 1.82
2448 2566 7.661847 CACTTATTTTGGGACAGAAAGAGTACT 59.338 37.037 0.00 0.00 42.39 2.73
2449 2567 7.444487 ACACTTATTTTGGGACAGAAAGAGTAC 59.556 37.037 0.00 0.00 42.39 2.73
2450 2568 7.514721 ACACTTATTTTGGGACAGAAAGAGTA 58.485 34.615 0.00 0.00 42.39 2.59
2451 2569 6.365520 ACACTTATTTTGGGACAGAAAGAGT 58.634 36.000 0.00 0.00 42.39 3.24
2452 2570 6.712547 AGACACTTATTTTGGGACAGAAAGAG 59.287 38.462 0.00 0.00 42.39 2.85
2453 2571 6.601332 AGACACTTATTTTGGGACAGAAAGA 58.399 36.000 0.00 0.00 42.39 2.52
2454 2572 6.486657 TGAGACACTTATTTTGGGACAGAAAG 59.513 38.462 0.00 0.00 42.39 2.62
2455 2573 6.361433 TGAGACACTTATTTTGGGACAGAAA 58.639 36.000 0.00 0.00 42.39 2.52
2456 2574 5.935945 TGAGACACTTATTTTGGGACAGAA 58.064 37.500 0.00 0.00 42.39 3.02
2457 2575 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
2458 2576 5.334105 CGTTGAGACACTTATTTTGGGACAG 60.334 44.000 0.00 0.00 42.39 3.51
2459 2577 4.513692 CGTTGAGACACTTATTTTGGGACA 59.486 41.667 0.00 0.00 0.00 4.02
2460 2578 4.514066 ACGTTGAGACACTTATTTTGGGAC 59.486 41.667 0.00 0.00 0.00 4.46
2461 2579 4.710324 ACGTTGAGACACTTATTTTGGGA 58.290 39.130 0.00 0.00 0.00 4.37
2462 2580 5.212194 CAACGTTGAGACACTTATTTTGGG 58.788 41.667 23.90 0.00 0.00 4.12
2463 2581 5.816919 ACAACGTTGAGACACTTATTTTGG 58.183 37.500 33.66 1.96 0.00 3.28
2464 2582 7.582679 CAGTACAACGTTGAGACACTTATTTTG 59.417 37.037 33.66 16.67 0.00 2.44
2465 2583 7.493320 TCAGTACAACGTTGAGACACTTATTTT 59.507 33.333 33.66 9.67 0.00 1.82
2466 2584 6.982141 TCAGTACAACGTTGAGACACTTATTT 59.018 34.615 33.66 9.88 0.00 1.40
2467 2585 6.509656 TCAGTACAACGTTGAGACACTTATT 58.490 36.000 33.66 10.40 0.00 1.40
2468 2586 6.016527 TCTCAGTACAACGTTGAGACACTTAT 60.017 38.462 33.66 11.14 41.62 1.73
2469 2587 5.297527 TCTCAGTACAACGTTGAGACACTTA 59.702 40.000 33.66 18.58 41.62 2.24
2470 2588 4.097437 TCTCAGTACAACGTTGAGACACTT 59.903 41.667 33.66 12.61 41.62 3.16
2471 2589 3.630769 TCTCAGTACAACGTTGAGACACT 59.369 43.478 33.66 23.96 41.62 3.55
2472 2590 3.961182 TCTCAGTACAACGTTGAGACAC 58.039 45.455 33.66 22.38 41.62 3.67
2476 2594 4.982295 TGTCAATCTCAGTACAACGTTGAG 59.018 41.667 33.66 20.23 39.69 3.02
2477 2595 4.743151 GTGTCAATCTCAGTACAACGTTGA 59.257 41.667 33.66 15.02 0.00 3.18
2478 2596 4.506288 TGTGTCAATCTCAGTACAACGTTG 59.494 41.667 26.20 26.20 0.00 4.10
2479 2597 4.506654 GTGTGTCAATCTCAGTACAACGTT 59.493 41.667 0.00 0.00 0.00 3.99
2480 2598 4.049186 GTGTGTCAATCTCAGTACAACGT 58.951 43.478 0.00 0.00 0.00 3.99
2481 2599 4.299155 AGTGTGTCAATCTCAGTACAACG 58.701 43.478 0.00 0.00 0.00 4.10
2482 2600 7.891183 ATAAGTGTGTCAATCTCAGTACAAC 57.109 36.000 0.00 0.00 0.00 3.32
2483 2601 8.902540 AAATAAGTGTGTCAATCTCAGTACAA 57.097 30.769 0.00 0.00 0.00 2.41
2484 2602 8.773645 CAAAATAAGTGTGTCAATCTCAGTACA 58.226 33.333 0.00 0.00 0.00 2.90
2485 2603 8.230486 CCAAAATAAGTGTGTCAATCTCAGTAC 58.770 37.037 0.00 0.00 0.00 2.73
2486 2604 7.390440 CCCAAAATAAGTGTGTCAATCTCAGTA 59.610 37.037 0.00 0.00 0.00 2.74
2487 2605 6.207417 CCCAAAATAAGTGTGTCAATCTCAGT 59.793 38.462 0.00 0.00 0.00 3.41
2488 2606 6.430925 TCCCAAAATAAGTGTGTCAATCTCAG 59.569 38.462 0.00 0.00 0.00 3.35
2489 2607 6.206634 GTCCCAAAATAAGTGTGTCAATCTCA 59.793 38.462 0.00 0.00 0.00 3.27
2490 2608 6.612306 GTCCCAAAATAAGTGTGTCAATCTC 58.388 40.000 0.00 0.00 0.00 2.75
2491 2609 5.181245 CGTCCCAAAATAAGTGTGTCAATCT 59.819 40.000 0.00 0.00 0.00 2.40
2492 2610 5.390613 CGTCCCAAAATAAGTGTGTCAATC 58.609 41.667 0.00 0.00 0.00 2.67
2493 2611 4.217550 CCGTCCCAAAATAAGTGTGTCAAT 59.782 41.667 0.00 0.00 0.00 2.57
2494 2612 3.566322 CCGTCCCAAAATAAGTGTGTCAA 59.434 43.478 0.00 0.00 0.00 3.18
2495 2613 3.142951 CCGTCCCAAAATAAGTGTGTCA 58.857 45.455 0.00 0.00 0.00 3.58
2496 2614 3.404899 TCCGTCCCAAAATAAGTGTGTC 58.595 45.455 0.00 0.00 0.00 3.67
2497 2615 3.408634 CTCCGTCCCAAAATAAGTGTGT 58.591 45.455 0.00 0.00 0.00 3.72
2498 2616 2.747446 CCTCCGTCCCAAAATAAGTGTG 59.253 50.000 0.00 0.00 0.00 3.82
2499 2617 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2500 2618 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2501 2619 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2502 2620 2.504175 TCTCCCTCCGTCCCAAAATAAG 59.496 50.000 0.00 0.00 0.00 1.73
2503 2621 2.553464 TCTCCCTCCGTCCCAAAATAA 58.447 47.619 0.00 0.00 0.00 1.40
2504 2622 2.257391 TCTCCCTCCGTCCCAAAATA 57.743 50.000 0.00 0.00 0.00 1.40
2505 2623 1.282157 CTTCTCCCTCCGTCCCAAAAT 59.718 52.381 0.00 0.00 0.00 1.82
2506 2624 0.690762 CTTCTCCCTCCGTCCCAAAA 59.309 55.000 0.00 0.00 0.00 2.44
2507 2625 0.178915 TCTTCTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2508 2626 0.042731 ATCTTCTCCCTCCGTCCCAA 59.957 55.000 0.00 0.00 0.00 4.12
2509 2627 0.931468 TATCTTCTCCCTCCGTCCCA 59.069 55.000 0.00 0.00 0.00 4.37
2510 2628 1.330234 GTATCTTCTCCCTCCGTCCC 58.670 60.000 0.00 0.00 0.00 4.46
2511 2629 2.068834 TGTATCTTCTCCCTCCGTCC 57.931 55.000 0.00 0.00 0.00 4.79
2512 2630 3.223435 TCATGTATCTTCTCCCTCCGTC 58.777 50.000 0.00 0.00 0.00 4.79
2513 2631 3.314307 TCATGTATCTTCTCCCTCCGT 57.686 47.619 0.00 0.00 0.00 4.69
2514 2632 4.881019 ATTCATGTATCTTCTCCCTCCG 57.119 45.455 0.00 0.00 0.00 4.63
2515 2633 6.723977 ACTCTATTCATGTATCTTCTCCCTCC 59.276 42.308 0.00 0.00 0.00 4.30
2516 2634 7.232534 ACACTCTATTCATGTATCTTCTCCCTC 59.767 40.741 0.00 0.00 0.00 4.30
2517 2635 7.072562 ACACTCTATTCATGTATCTTCTCCCT 58.927 38.462 0.00 0.00 0.00 4.20
2518 2636 7.296628 ACACTCTATTCATGTATCTTCTCCC 57.703 40.000 0.00 0.00 0.00 4.30
2519 2637 8.200792 ACAACACTCTATTCATGTATCTTCTCC 58.799 37.037 0.00 0.00 0.00 3.71
2520 2638 9.029243 CACAACACTCTATTCATGTATCTTCTC 57.971 37.037 0.00 0.00 0.00 2.87
2521 2639 8.535335 ACACAACACTCTATTCATGTATCTTCT 58.465 33.333 0.00 0.00 0.00 2.85
2522 2640 8.709386 ACACAACACTCTATTCATGTATCTTC 57.291 34.615 0.00 0.00 0.00 2.87
2523 2641 8.314021 TGACACAACACTCTATTCATGTATCTT 58.686 33.333 0.00 0.00 0.00 2.40
2524 2642 7.840931 TGACACAACACTCTATTCATGTATCT 58.159 34.615 0.00 0.00 0.00 1.98
2525 2643 8.654230 ATGACACAACACTCTATTCATGTATC 57.346 34.615 0.00 0.00 0.00 2.24
2526 2644 8.481314 AGATGACACAACACTCTATTCATGTAT 58.519 33.333 0.00 0.00 0.00 2.29
2527 2645 7.840931 AGATGACACAACACTCTATTCATGTA 58.159 34.615 0.00 0.00 0.00 2.29
2528 2646 6.705302 AGATGACACAACACTCTATTCATGT 58.295 36.000 0.00 0.00 0.00 3.21
2529 2647 7.606858 AAGATGACACAACACTCTATTCATG 57.393 36.000 0.00 0.00 0.00 3.07
2530 2648 8.753133 TCTAAGATGACACAACACTCTATTCAT 58.247 33.333 0.00 0.00 0.00 2.57
2531 2649 8.122472 TCTAAGATGACACAACACTCTATTCA 57.878 34.615 0.00 0.00 0.00 2.57
2532 2650 8.988064 TTCTAAGATGACACAACACTCTATTC 57.012 34.615 0.00 0.00 0.00 1.75
2535 2653 8.467598 GGTATTCTAAGATGACACAACACTCTA 58.532 37.037 0.00 0.00 0.00 2.43
2536 2654 7.039011 TGGTATTCTAAGATGACACAACACTCT 60.039 37.037 0.00 0.00 0.00 3.24
2537 2655 7.063544 GTGGTATTCTAAGATGACACAACACTC 59.936 40.741 0.00 0.00 0.00 3.51
2538 2656 6.874134 GTGGTATTCTAAGATGACACAACACT 59.126 38.462 0.00 0.00 0.00 3.55
2539 2657 6.092259 GGTGGTATTCTAAGATGACACAACAC 59.908 42.308 0.00 0.00 0.00 3.32
2540 2658 6.170506 GGTGGTATTCTAAGATGACACAACA 58.829 40.000 0.00 0.00 0.00 3.33
2541 2659 6.092259 GTGGTGGTATTCTAAGATGACACAAC 59.908 42.308 0.00 0.00 0.00 3.32
2542 2660 6.170506 GTGGTGGTATTCTAAGATGACACAA 58.829 40.000 0.00 0.00 0.00 3.33
2543 2661 5.247337 TGTGGTGGTATTCTAAGATGACACA 59.753 40.000 0.00 0.00 0.00 3.72
2544 2662 5.730550 TGTGGTGGTATTCTAAGATGACAC 58.269 41.667 0.00 0.00 0.00 3.67
2545 2663 6.156083 TCATGTGGTGGTATTCTAAGATGACA 59.844 38.462 0.00 0.00 0.00 3.58
2546 2664 6.582636 TCATGTGGTGGTATTCTAAGATGAC 58.417 40.000 0.00 0.00 0.00 3.06
2547 2665 6.806668 TCATGTGGTGGTATTCTAAGATGA 57.193 37.500 0.00 0.00 0.00 2.92
2548 2666 7.521099 GCAATCATGTGGTGGTATTCTAAGATG 60.521 40.741 0.00 0.00 0.00 2.90
2549 2667 6.488006 GCAATCATGTGGTGGTATTCTAAGAT 59.512 38.462 0.00 0.00 0.00 2.40
2550 2668 5.822519 GCAATCATGTGGTGGTATTCTAAGA 59.177 40.000 0.00 0.00 0.00 2.10
2551 2669 5.589855 TGCAATCATGTGGTGGTATTCTAAG 59.410 40.000 0.00 0.00 0.00 2.18
2552 2670 5.356751 GTGCAATCATGTGGTGGTATTCTAA 59.643 40.000 0.00 0.00 0.00 2.10
2553 2671 4.881273 GTGCAATCATGTGGTGGTATTCTA 59.119 41.667 0.00 0.00 0.00 2.10
2554 2672 3.696051 GTGCAATCATGTGGTGGTATTCT 59.304 43.478 0.00 0.00 0.00 2.40
2555 2673 3.443329 TGTGCAATCATGTGGTGGTATTC 59.557 43.478 0.00 0.00 0.00 1.75
2556 2674 3.429492 TGTGCAATCATGTGGTGGTATT 58.571 40.909 0.00 0.00 0.00 1.89
2557 2675 3.084536 TGTGCAATCATGTGGTGGTAT 57.915 42.857 0.00 0.00 0.00 2.73
2558 2676 2.575805 TGTGCAATCATGTGGTGGTA 57.424 45.000 0.00 0.00 0.00 3.25
2559 2677 1.702182 TTGTGCAATCATGTGGTGGT 58.298 45.000 0.00 0.00 0.00 4.16
2560 2678 4.659111 ATATTGTGCAATCATGTGGTGG 57.341 40.909 0.18 0.00 32.50 4.61
2561 2679 8.953313 AGATATATATTGTGCAATCATGTGGTG 58.047 33.333 0.18 0.00 32.50 4.17
2562 2680 9.170734 GAGATATATATTGTGCAATCATGTGGT 57.829 33.333 0.18 0.00 32.50 4.16
2563 2681 9.392259 AGAGATATATATTGTGCAATCATGTGG 57.608 33.333 0.18 0.00 32.50 4.17
2659 2783 1.303643 GCAAAGGTGGGAGGAGGTG 60.304 63.158 0.00 0.00 0.00 4.00
2689 2821 0.690762 TGGGGGAAGGAGACGAAAAG 59.309 55.000 0.00 0.00 0.00 2.27
2727 2860 1.048601 ATTGTGTGAGAGGGTGACGT 58.951 50.000 0.00 0.00 0.00 4.34
2928 3062 4.091549 ACCATCCGTGAGTTAAGGTAAGA 58.908 43.478 0.00 0.00 0.00 2.10
2979 3113 9.282569 GAGAGTTTATTTACTACTCCCTCGATA 57.717 37.037 0.00 0.00 39.23 2.92
3004 3138 7.977818 AGGTCATATACATGCCATAAGAAAGA 58.022 34.615 0.00 0.00 33.35 2.52
3027 3161 2.158460 ACAACAGAAAGGGAAGGGAAGG 60.158 50.000 0.00 0.00 0.00 3.46
3040 3174 1.858458 CAAGAACGCTCGACAACAGAA 59.142 47.619 0.00 0.00 0.00 3.02
3160 3294 4.649705 TCTTCGCCCCCTCCACCA 62.650 66.667 0.00 0.00 0.00 4.17
3165 3299 4.491409 GCCCTTCTTCGCCCCCTC 62.491 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.