Multiple sequence alignment - TraesCS7A01G338500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G338500 chr7A 100.000 3410 0 0 1 3410 495540966 495537557 0.000000e+00 6298.0
1 TraesCS7A01G338500 chr7D 81.287 1336 123 72 425 1715 444354123 444352870 0.000000e+00 965.0
2 TraesCS7A01G338500 chr7D 91.707 627 43 4 2787 3410 444350970 444350350 0.000000e+00 861.0
3 TraesCS7A01G338500 chr7D 93.750 304 10 5 1800 2097 444352739 444352439 6.710000e-122 448.0
4 TraesCS7A01G338500 chr7D 90.657 289 23 2 1 289 444354473 444354189 6.910000e-102 381.0
5 TraesCS7A01G338500 chr7D 85.379 383 24 12 2162 2518 444352413 444352037 5.380000e-98 368.0
6 TraesCS7A01G338500 chr7B 82.251 1155 101 51 1016 2092 461207533 461206405 0.000000e+00 902.0
7 TraesCS7A01G338500 chr7B 89.372 621 60 2 2790 3410 461204832 461204218 0.000000e+00 776.0
8 TraesCS7A01G338500 chr7B 86.157 549 36 10 2162 2690 461206371 461205843 1.070000e-154 556.0
9 TraesCS7A01G338500 chr7B 82.609 598 55 31 425 1009 461212226 461211665 1.840000e-132 483.0
10 TraesCS7A01G338500 chr7B 87.772 368 38 4 1 366 461212600 461212238 1.130000e-114 424.0
11 TraesCS7A01G338500 chr2D 77.865 1274 149 77 1182 2427 588677563 588676395 0.000000e+00 667.0
12 TraesCS7A01G338500 chr2B 77.717 1279 153 72 1180 2429 712318296 712319471 0.000000e+00 662.0
13 TraesCS7A01G338500 chr2A 77.105 1271 163 71 1180 2427 723360025 723358860 4.830000e-173 617.0
14 TraesCS7A01G338500 chr4A 90.805 87 7 1 2705 2790 572640022 572640108 7.730000e-22 115.0
15 TraesCS7A01G338500 chr6D 86.207 87 8 1 2705 2791 452723905 452723823 1.300000e-14 91.6
16 TraesCS7A01G338500 chr6D 83.516 91 10 2 2705 2792 36125606 36125518 2.820000e-11 80.5
17 TraesCS7A01G338500 chr1B 88.312 77 7 2 2707 2782 327562956 327562881 1.300000e-14 91.6
18 TraesCS7A01G338500 chr3A 85.227 88 10 2 2707 2791 719267148 719267061 1.690000e-13 87.9
19 TraesCS7A01G338500 chr1D 86.842 76 7 3 2708 2782 208189972 208190045 7.840000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G338500 chr7A 495537557 495540966 3409 True 6298.000000 6298 100.000000 1 3410 1 chr7A.!!$R1 3409
1 TraesCS7A01G338500 chr7D 444350350 444354473 4123 True 604.600000 965 88.556000 1 3410 5 chr7D.!!$R1 3409
2 TraesCS7A01G338500 chr7B 461204218 461207533 3315 True 744.666667 902 85.926667 1016 3410 3 chr7B.!!$R1 2394
3 TraesCS7A01G338500 chr7B 461211665 461212600 935 True 453.500000 483 85.190500 1 1009 2 chr7B.!!$R2 1008
4 TraesCS7A01G338500 chr2D 588676395 588677563 1168 True 667.000000 667 77.865000 1182 2427 1 chr2D.!!$R1 1245
5 TraesCS7A01G338500 chr2B 712318296 712319471 1175 False 662.000000 662 77.717000 1180 2429 1 chr2B.!!$F1 1249
6 TraesCS7A01G338500 chr2A 723358860 723360025 1165 True 617.000000 617 77.105000 1180 2427 1 chr2A.!!$R1 1247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 844 0.031857 CCAATTTTGCCAGTCACGCA 59.968 50.0 0.00 0.0 0.0 5.24 F
1000 1012 0.184933 AAGTAGTTGCCAACCAGCCA 59.815 50.0 3.45 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1876 0.028902 GCACTGTTTGTCGTTCCACC 59.971 55.0 0.0 0.0 0.0 4.61 R
2932 4552 0.109342 AGTTTGAGCTGGTGTGGGAG 59.891 55.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.935828 GTCAGAGAGGCATTGGTTAAGAC 59.064 47.826 0.00 0.00 0.00 3.01
55 56 6.041979 AGAGGCATTGGTTAAGACAAAATTGT 59.958 34.615 0.00 0.00 45.65 2.71
124 125 3.120304 GCTAATGAAGAAACCACGGTGTC 60.120 47.826 7.45 0.00 32.70 3.67
131 132 0.393808 AAACCACGGTGTCAAGTGCT 60.394 50.000 7.45 0.00 37.07 4.40
154 155 6.647212 TGACGTTGTTCATATTCTTGCTAG 57.353 37.500 0.00 0.00 0.00 3.42
158 159 6.534079 ACGTTGTTCATATTCTTGCTAGTACC 59.466 38.462 0.00 0.00 0.00 3.34
161 162 8.726988 GTTGTTCATATTCTTGCTAGTACCAAA 58.273 33.333 0.00 0.00 0.00 3.28
167 168 2.976882 TCTTGCTAGTACCAAACTGGGT 59.023 45.455 0.00 0.00 43.37 4.51
180 181 0.834687 ACTGGGTCCACGCTTAGGAA 60.835 55.000 0.00 0.00 36.80 3.36
186 187 3.195661 GGTCCACGCTTAGGAACATTAG 58.804 50.000 0.00 0.00 42.56 1.73
191 192 3.871594 CACGCTTAGGAACATTAGGAAGG 59.128 47.826 0.00 0.00 0.00 3.46
202 203 6.127980 GGAACATTAGGAAGGAAACTAACTGC 60.128 42.308 0.00 0.00 42.68 4.40
209 210 0.717784 GGAAACTAACTGCGCGTACC 59.282 55.000 8.43 0.00 0.00 3.34
239 240 9.828039 AGCATATGGTTATCAGATGTGTATATG 57.172 33.333 0.40 4.66 44.50 1.78
257 258 2.027073 GTCGCGATGTCTGGTTGCA 61.027 57.895 14.06 0.00 0.00 4.08
267 268 1.134946 GTCTGGTTGCAACTGCTGTTT 59.865 47.619 27.64 0.00 42.66 2.83
270 271 0.100503 GGTTGCAACTGCTGTTTCGT 59.899 50.000 27.64 0.00 42.66 3.85
273 274 1.356624 GCAACTGCTGTTTCGTGCT 59.643 52.632 6.20 0.00 38.21 4.40
276 277 1.498865 AACTGCTGTTTCGTGCTCGG 61.499 55.000 8.49 0.00 37.69 4.63
281 282 0.389817 CTGTTTCGTGCTCGGGATCA 60.390 55.000 8.49 2.91 37.69 2.92
284 285 1.128692 GTTTCGTGCTCGGGATCAAAG 59.871 52.381 8.49 0.00 37.69 2.77
299 300 6.852853 CGGGATCAAAGACAATTGAATAATCG 59.147 38.462 13.59 0.19 42.22 3.34
302 303 9.956720 GGATCAAAGACAATTGAATAATCGAAT 57.043 29.630 13.59 0.00 42.22 3.34
349 352 9.693739 TCAGTAATTTCCTTTGGCTATATTTGA 57.306 29.630 0.00 0.00 0.00 2.69
366 369 9.454585 CTATATTTGATGTTTACATGTGGCTTG 57.545 33.333 9.11 0.00 36.57 4.01
367 370 5.528043 TTTGATGTTTACATGTGGCTTGT 57.472 34.783 9.11 0.00 36.57 3.16
369 372 5.528043 TGATGTTTACATGTGGCTTGTTT 57.472 34.783 9.11 0.00 36.57 2.83
370 373 6.641169 TGATGTTTACATGTGGCTTGTTTA 57.359 33.333 9.11 0.00 36.57 2.01
371 374 7.225784 TGATGTTTACATGTGGCTTGTTTAT 57.774 32.000 9.11 0.00 36.57 1.40
372 375 8.341892 TGATGTTTACATGTGGCTTGTTTATA 57.658 30.769 9.11 0.00 36.57 0.98
373 376 8.240682 TGATGTTTACATGTGGCTTGTTTATAC 58.759 33.333 9.11 0.00 36.57 1.47
374 377 6.915349 TGTTTACATGTGGCTTGTTTATACC 58.085 36.000 9.11 0.00 0.00 2.73
375 378 6.717540 TGTTTACATGTGGCTTGTTTATACCT 59.282 34.615 9.11 0.00 0.00 3.08
376 379 6.751514 TTACATGTGGCTTGTTTATACCTG 57.248 37.500 9.11 0.00 0.00 4.00
377 380 4.917385 ACATGTGGCTTGTTTATACCTGA 58.083 39.130 0.00 0.00 0.00 3.86
378 381 5.321102 ACATGTGGCTTGTTTATACCTGAA 58.679 37.500 0.00 0.00 0.00 3.02
379 382 5.772672 ACATGTGGCTTGTTTATACCTGAAA 59.227 36.000 0.00 0.00 0.00 2.69
380 383 6.266558 ACATGTGGCTTGTTTATACCTGAAAA 59.733 34.615 0.00 0.00 0.00 2.29
381 384 6.716934 TGTGGCTTGTTTATACCTGAAAAA 57.283 33.333 0.00 0.00 0.00 1.94
399 402 4.510038 AAAAATCACCATGTCAGCACTC 57.490 40.909 0.00 0.00 0.00 3.51
400 403 2.865119 AATCACCATGTCAGCACTCA 57.135 45.000 0.00 0.00 0.00 3.41
401 404 2.865119 ATCACCATGTCAGCACTCAA 57.135 45.000 0.00 0.00 0.00 3.02
402 405 1.882912 TCACCATGTCAGCACTCAAC 58.117 50.000 0.00 0.00 0.00 3.18
403 406 1.140652 TCACCATGTCAGCACTCAACA 59.859 47.619 0.00 0.00 0.00 3.33
404 407 2.156917 CACCATGTCAGCACTCAACAT 58.843 47.619 0.00 0.00 34.03 2.71
405 408 2.095415 CACCATGTCAGCACTCAACATG 60.095 50.000 12.59 12.59 46.25 3.21
406 409 2.913777 CATGTCAGCACTCAACATGG 57.086 50.000 12.03 0.00 44.10 3.66
407 410 2.429478 CATGTCAGCACTCAACATGGA 58.571 47.619 12.03 0.00 44.10 3.41
408 411 2.636647 TGTCAGCACTCAACATGGAA 57.363 45.000 0.00 0.00 0.00 3.53
409 412 2.221169 TGTCAGCACTCAACATGGAAC 58.779 47.619 0.00 0.00 0.00 3.62
410 413 5.810689 CATGTCAGCACTCAACATGGAACA 61.811 45.833 12.03 0.00 44.10 3.18
434 437 0.645868 GCGCTCGAGTGTTCCATAAC 59.354 55.000 25.72 4.16 36.07 1.89
435 438 1.736032 GCGCTCGAGTGTTCCATAACT 60.736 52.381 25.72 0.00 36.51 2.24
436 439 1.920574 CGCTCGAGTGTTCCATAACTG 59.079 52.381 17.90 0.00 36.51 3.16
437 440 1.661112 GCTCGAGTGTTCCATAACTGC 59.339 52.381 15.13 0.00 36.51 4.40
439 442 3.325870 CTCGAGTGTTCCATAACTGCAA 58.674 45.455 3.62 0.00 36.51 4.08
440 443 3.064207 TCGAGTGTTCCATAACTGCAAC 58.936 45.455 0.00 0.00 36.51 4.17
442 445 3.249799 CGAGTGTTCCATAACTGCAACAA 59.750 43.478 0.00 0.00 36.51 2.83
443 446 4.611355 CGAGTGTTCCATAACTGCAACAAG 60.611 45.833 0.00 0.00 36.51 3.16
444 447 3.004734 AGTGTTCCATAACTGCAACAAGC 59.995 43.478 0.00 0.00 37.36 4.01
462 465 6.780457 ACAAGCAGCAGGTTAATGAAATAT 57.220 33.333 0.00 0.00 33.39 1.28
468 471 6.039717 GCAGCAGGTTAATGAAATATCCTTGA 59.960 38.462 0.00 0.00 0.00 3.02
470 473 9.288576 CAGCAGGTTAATGAAATATCCTTGATA 57.711 33.333 0.00 0.00 0.00 2.15
471 474 9.289782 AGCAGGTTAATGAAATATCCTTGATAC 57.710 33.333 0.00 0.00 0.00 2.24
508 511 0.324943 TGGTTGCTAGCAAGGAGGTC 59.675 55.000 29.99 16.62 36.52 3.85
524 527 4.100963 AGGAGGTCAACATACATCGCAATA 59.899 41.667 0.00 0.00 31.03 1.90
556 560 1.269569 TGCTGTAACACGTCTCCACTG 60.270 52.381 0.00 0.00 0.00 3.66
558 562 0.747852 TGTAACACGTCTCCACTGCA 59.252 50.000 0.00 0.00 0.00 4.41
598 602 3.270877 CGGGAAGTCCAAATCGAATCTT 58.729 45.455 0.00 0.00 37.91 2.40
605 609 3.561725 GTCCAAATCGAATCTTAGGCCAG 59.438 47.826 5.01 0.00 0.00 4.85
606 610 3.454447 TCCAAATCGAATCTTAGGCCAGA 59.546 43.478 5.01 0.00 0.00 3.86
635 639 4.469657 TGTATGTTATCCCAAAGGCCATC 58.530 43.478 5.01 0.00 0.00 3.51
636 640 2.452600 TGTTATCCCAAAGGCCATCC 57.547 50.000 5.01 0.00 0.00 3.51
643 647 0.545071 CCAAAGGCCATCCCAAACCT 60.545 55.000 5.01 0.00 35.39 3.50
669 673 0.577269 CAGCGGCGAAATGTAGCTAC 59.423 55.000 17.30 17.30 36.28 3.58
670 674 0.460311 AGCGGCGAAATGTAGCTACT 59.540 50.000 23.84 4.56 36.28 2.57
672 676 1.785430 GCGGCGAAATGTAGCTACTAC 59.215 52.381 23.84 11.50 37.46 2.73
745 749 4.245054 GTCACGCACTGACGACAT 57.755 55.556 0.00 0.00 40.14 3.06
746 750 1.775344 GTCACGCACTGACGACATG 59.225 57.895 0.00 0.00 40.14 3.21
748 752 2.028925 ACGCACTGACGACATGCA 59.971 55.556 16.89 0.00 39.39 3.96
749 753 1.594021 ACGCACTGACGACATGCAA 60.594 52.632 16.89 0.00 39.39 4.08
751 755 0.166597 CGCACTGACGACATGCAATT 59.833 50.000 16.89 0.00 39.39 2.32
752 756 1.393196 CGCACTGACGACATGCAATTA 59.607 47.619 16.89 0.00 39.39 1.40
777 782 2.191513 CGTCGCTCCTTCCGGGATA 61.192 63.158 0.00 0.00 44.15 2.59
793 798 3.000684 GGATACTTCCCCCTTGACAAC 57.999 52.381 0.00 0.00 35.84 3.32
811 817 1.074951 CCCCTCCACACCAAGGAAC 59.925 63.158 0.00 0.00 34.35 3.62
813 819 1.302511 CCTCCACACCAAGGAACCG 60.303 63.158 0.00 0.00 34.35 4.44
814 820 1.752198 CTCCACACCAAGGAACCGA 59.248 57.895 0.00 0.00 34.08 4.69
815 821 0.324943 CTCCACACCAAGGAACCGAT 59.675 55.000 0.00 0.00 34.08 4.18
817 823 0.881118 CCACACCAAGGAACCGATTG 59.119 55.000 0.00 0.00 0.00 2.67
819 825 1.535462 CACACCAAGGAACCGATTGTC 59.465 52.381 0.00 0.00 0.00 3.18
820 826 1.165270 CACCAAGGAACCGATTGTCC 58.835 55.000 0.00 0.00 0.00 4.02
821 827 0.768622 ACCAAGGAACCGATTGTCCA 59.231 50.000 0.00 0.00 0.00 4.02
823 829 2.225017 ACCAAGGAACCGATTGTCCAAT 60.225 45.455 0.00 0.00 0.00 3.16
824 830 2.825532 CCAAGGAACCGATTGTCCAATT 59.174 45.455 0.00 0.00 0.00 2.32
825 831 3.258123 CCAAGGAACCGATTGTCCAATTT 59.742 43.478 0.00 0.00 0.00 1.82
827 833 4.519540 AGGAACCGATTGTCCAATTTTG 57.480 40.909 0.00 0.00 0.00 2.44
831 837 2.029110 ACCGATTGTCCAATTTTGCCAG 60.029 45.455 0.00 0.00 0.00 4.85
832 838 2.029110 CCGATTGTCCAATTTTGCCAGT 60.029 45.455 0.00 0.00 0.00 4.00
833 839 3.244976 CGATTGTCCAATTTTGCCAGTC 58.755 45.455 0.00 0.00 0.00 3.51
834 840 3.305267 CGATTGTCCAATTTTGCCAGTCA 60.305 43.478 0.00 0.00 0.00 3.41
835 841 3.451141 TTGTCCAATTTTGCCAGTCAC 57.549 42.857 0.00 0.00 0.00 3.67
836 842 1.336440 TGTCCAATTTTGCCAGTCACG 59.664 47.619 0.00 0.00 0.00 4.35
837 843 0.313672 TCCAATTTTGCCAGTCACGC 59.686 50.000 0.00 0.00 0.00 5.34
838 844 0.031857 CCAATTTTGCCAGTCACGCA 59.968 50.000 0.00 0.00 0.00 5.24
839 845 1.130955 CAATTTTGCCAGTCACGCAC 58.869 50.000 0.00 0.00 35.56 5.34
840 846 0.317770 AATTTTGCCAGTCACGCACG 60.318 50.000 0.00 0.00 35.56 5.34
841 847 2.731587 ATTTTGCCAGTCACGCACGC 62.732 55.000 0.00 0.00 35.56 5.34
842 848 4.908687 TTGCCAGTCACGCACGCT 62.909 61.111 0.00 0.00 35.56 5.07
843 849 4.908687 TGCCAGTCACGCACGCTT 62.909 61.111 0.00 0.00 0.00 4.68
844 850 4.077188 GCCAGTCACGCACGCTTC 62.077 66.667 0.00 0.00 0.00 3.86
845 851 3.767230 CCAGTCACGCACGCTTCG 61.767 66.667 0.00 0.00 0.00 3.79
846 852 3.767230 CAGTCACGCACGCTTCGG 61.767 66.667 0.00 0.00 0.00 4.30
847 853 3.973516 AGTCACGCACGCTTCGGA 61.974 61.111 0.00 0.00 0.00 4.55
848 854 3.764049 GTCACGCACGCTTCGGAC 61.764 66.667 0.00 0.00 0.00 4.79
854 860 4.717629 CACGCTTCGGACGGCTGA 62.718 66.667 0.00 0.00 34.00 4.26
876 882 3.121030 GGCGCACGATGCTCAAGT 61.121 61.111 10.83 0.00 42.25 3.16
885 891 1.078848 ATGCTCAAGTGCTCCCGTC 60.079 57.895 0.00 0.00 0.00 4.79
886 892 1.548357 ATGCTCAAGTGCTCCCGTCT 61.548 55.000 0.00 0.00 0.00 4.18
910 916 1.477553 GGTACCCACCGATCAGTGTA 58.522 55.000 8.24 0.00 35.93 2.90
917 923 1.520787 CCGATCAGTGTAACGGCCC 60.521 63.158 0.00 0.00 45.86 5.80
934 940 4.063967 CGCACGAGCACCCCTACA 62.064 66.667 5.50 0.00 42.27 2.74
942 952 1.918800 GCACCCCTACACCTCACCT 60.919 63.158 0.00 0.00 0.00 4.00
947 957 1.486211 CCCTACACCTCACCTACCTG 58.514 60.000 0.00 0.00 0.00 4.00
988 1000 3.411351 CGGCGCGCACAAGTAGTT 61.411 61.111 34.42 0.00 0.00 2.24
997 1009 1.001378 GCACAAGTAGTTGCCAACCAG 60.001 52.381 10.30 0.00 37.14 4.00
998 1010 1.001378 CACAAGTAGTTGCCAACCAGC 60.001 52.381 10.30 0.00 37.14 4.85
999 1011 0.598065 CAAGTAGTTGCCAACCAGCC 59.402 55.000 3.45 0.00 0.00 4.85
1000 1012 0.184933 AAGTAGTTGCCAACCAGCCA 59.815 50.000 3.45 0.00 0.00 4.75
1001 1013 0.405585 AGTAGTTGCCAACCAGCCAT 59.594 50.000 3.45 0.00 0.00 4.40
1002 1014 0.527565 GTAGTTGCCAACCAGCCATG 59.472 55.000 3.45 0.00 0.00 3.66
1003 1015 0.403655 TAGTTGCCAACCAGCCATGA 59.596 50.000 3.45 0.00 0.00 3.07
1004 1016 0.251922 AGTTGCCAACCAGCCATGAT 60.252 50.000 3.45 0.00 0.00 2.45
1005 1017 1.005805 AGTTGCCAACCAGCCATGATA 59.994 47.619 3.45 0.00 0.00 2.15
1006 1018 1.406539 GTTGCCAACCAGCCATGATAG 59.593 52.381 0.00 0.00 0.00 2.08
1014 1026 6.051717 CCAACCAGCCATGATAGTATATAGC 58.948 44.000 0.00 0.00 0.00 2.97
1027 1039 7.450634 TGATAGTATATAGCACGAACCTTCCTT 59.549 37.037 0.00 0.00 0.00 3.36
1079 1096 1.059098 CCCATATCACTGGCTGGCTA 58.941 55.000 2.00 0.00 34.77 3.93
1080 1097 1.271054 CCCATATCACTGGCTGGCTAC 60.271 57.143 2.00 0.00 34.77 3.58
1081 1098 1.696336 CCATATCACTGGCTGGCTACT 59.304 52.381 2.00 0.00 0.00 2.57
1082 1099 2.289320 CCATATCACTGGCTGGCTACTC 60.289 54.545 2.00 0.00 0.00 2.59
1083 1100 2.461300 TATCACTGGCTGGCTACTCT 57.539 50.000 2.00 0.00 0.00 3.24
1086 1107 2.188994 CTGGCTGGCTACTCTGGC 59.811 66.667 2.00 0.00 0.00 4.85
1090 1111 4.880537 CTGGCTACTCTGGCGGCG 62.881 72.222 0.51 0.51 35.06 6.46
1092 1113 4.874977 GGCTACTCTGGCGGCGTC 62.875 72.222 3.62 3.62 0.00 5.19
1116 1137 1.030488 TAGAGCGGGAGAGTGTTCCG 61.030 60.000 1.69 1.69 45.84 4.30
1123 1144 0.245813 GGAGAGTGTTCCGGTGTACC 59.754 60.000 0.00 0.00 0.00 3.34
1131 1155 2.424705 TTCCGGTGTACCACGTGCTC 62.425 60.000 10.91 2.96 34.83 4.26
1144 1168 3.345808 TGCTCGTGCTTGGAACGC 61.346 61.111 11.19 0.00 40.80 4.84
1159 1183 2.883730 CGCCGTACGTGTCCATGG 60.884 66.667 15.21 4.97 36.87 3.66
1193 1226 2.903855 GGCGCAGGTGATGGATGG 60.904 66.667 10.83 0.00 0.00 3.51
1215 1248 1.303282 GATCAAGGGGCGGGAGTTT 59.697 57.895 0.00 0.00 0.00 2.66
1296 1332 4.148825 CTCCACGCCTTCTCCCGG 62.149 72.222 0.00 0.00 0.00 5.73
1302 1338 4.883354 GCCTTCTCCCGGGCCATG 62.883 72.222 18.49 6.51 42.30 3.66
1342 1390 4.393155 CTGCCACGGCTGCTACCA 62.393 66.667 9.92 0.00 42.51 3.25
1343 1391 4.393155 TGCCACGGCTGCTACCAG 62.393 66.667 9.92 0.00 42.51 4.00
1371 1419 2.680352 AGGTCCTCGGACGTGCAT 60.680 61.111 8.11 0.00 45.41 3.96
1389 1437 0.755698 ATAGCGAGGTCACCGATGGT 60.756 55.000 0.00 0.00 35.62 3.55
1463 1518 1.618837 CTGTCGGAGAAGGTGAGGAAA 59.381 52.381 0.00 0.00 39.69 3.13
1469 1524 0.610687 AGAAGGTGAGGAAAGCTCGG 59.389 55.000 0.00 0.00 0.00 4.63
1483 1538 0.741221 GCTCGGGCTCACGATTCTTT 60.741 55.000 0.00 0.00 42.62 2.52
1484 1539 1.002366 CTCGGGCTCACGATTCTTTG 58.998 55.000 0.00 0.00 42.62 2.77
1489 1544 3.728864 CGGGCTCACGATTCTTTGATTTG 60.729 47.826 0.00 0.00 35.47 2.32
1491 1546 4.321230 GGGCTCACGATTCTTTGATTTGTT 60.321 41.667 0.00 0.00 0.00 2.83
1493 1548 5.117592 GGCTCACGATTCTTTGATTTGTTTG 59.882 40.000 0.00 0.00 0.00 2.93
1495 1550 6.198966 GCTCACGATTCTTTGATTTGTTTGTT 59.801 34.615 0.00 0.00 0.00 2.83
1496 1551 7.378461 GCTCACGATTCTTTGATTTGTTTGTTA 59.622 33.333 0.00 0.00 0.00 2.41
1497 1552 9.398170 CTCACGATTCTTTGATTTGTTTGTTAT 57.602 29.630 0.00 0.00 0.00 1.89
1498 1553 9.179552 TCACGATTCTTTGATTTGTTTGTTATG 57.820 29.630 0.00 0.00 0.00 1.90
1499 1554 8.967218 CACGATTCTTTGATTTGTTTGTTATGT 58.033 29.630 0.00 0.00 0.00 2.29
1500 1555 9.528018 ACGATTCTTTGATTTGTTTGTTATGTT 57.472 25.926 0.00 0.00 0.00 2.71
1522 1577 7.210174 TGTTATTCTTGACATAATCTCCCTCG 58.790 38.462 0.00 0.00 0.00 4.63
1523 1578 5.878406 ATTCTTGACATAATCTCCCTCGT 57.122 39.130 0.00 0.00 0.00 4.18
1537 1595 5.914033 TCTCCCTCGTTAATTAACTGGATG 58.086 41.667 25.74 19.83 34.12 3.51
1542 1600 6.150474 CCCTCGTTAATTAACTGGATGTTTGT 59.850 38.462 25.74 0.00 39.89 2.83
1543 1601 7.241376 CCTCGTTAATTAACTGGATGTTTGTC 58.759 38.462 22.57 0.00 39.89 3.18
1600 1684 3.052082 CGTTGCAGGACCCAGCAG 61.052 66.667 8.97 0.00 39.50 4.24
1703 1787 1.604693 CCAAGCACTCGAGGTACGTTT 60.605 52.381 18.41 3.69 43.13 3.60
1704 1788 1.719780 CAAGCACTCGAGGTACGTTTC 59.280 52.381 18.41 0.00 43.13 2.78
1712 1818 0.458025 GAGGTACGTTTCTCTGCCCG 60.458 60.000 0.00 0.00 0.00 6.13
1729 1848 2.146342 CCCGCCAATGATCATCACTAC 58.854 52.381 9.06 0.00 0.00 2.73
1734 1853 5.048013 CCGCCAATGATCATCACTACTAGTA 60.048 44.000 9.06 1.89 0.00 1.82
1736 1855 7.093354 CGCCAATGATCATCACTACTAGTAAT 58.907 38.462 9.06 0.00 0.00 1.89
1737 1856 8.244113 CGCCAATGATCATCACTACTAGTAATA 58.756 37.037 9.06 0.00 0.00 0.98
1738 1857 9.929180 GCCAATGATCATCACTACTAGTAATAA 57.071 33.333 9.06 0.00 0.00 1.40
1743 1862 8.080417 TGATCATCACTACTAGTAATAAACCGC 58.920 37.037 3.76 0.00 0.00 5.68
1756 1876 4.776795 ATAAACCGCTAAAAACCACCAG 57.223 40.909 0.00 0.00 0.00 4.00
1771 1914 0.253610 ACCAGGTGGAACGACAAACA 59.746 50.000 2.10 0.00 38.12 2.83
1772 1915 0.944386 CCAGGTGGAACGACAAACAG 59.056 55.000 0.00 0.00 38.12 3.16
1776 1919 1.014352 GTGGAACGACAAACAGTGCT 58.986 50.000 0.00 0.00 0.00 4.40
1777 1920 1.003866 GTGGAACGACAAACAGTGCTC 60.004 52.381 0.00 0.00 0.00 4.26
1779 1922 1.583054 GAACGACAAACAGTGCTCCT 58.417 50.000 0.00 0.00 0.00 3.69
1787 1930 1.136828 AACAGTGCTCCTACCAACCA 58.863 50.000 0.00 0.00 0.00 3.67
1798 1941 1.406539 CTACCAACCATGCCTGCAATC 59.593 52.381 0.00 0.00 0.00 2.67
1901 2058 1.372997 CGCACAAGTACGACCAGCT 60.373 57.895 0.00 0.00 0.00 4.24
2019 2179 4.450122 GCTGTGGCGTCGCACATG 62.450 66.667 20.50 14.34 0.00 3.21
2123 2298 3.097728 CAGCACGACCACGACGAC 61.098 66.667 0.00 0.00 42.66 4.34
2124 2299 4.678269 AGCACGACCACGACGACG 62.678 66.667 5.58 5.58 42.66 5.12
2126 2301 2.175078 CACGACCACGACGACGAT 59.825 61.111 15.32 0.00 42.66 3.73
2127 2302 2.144069 CACGACCACGACGACGATG 61.144 63.158 15.32 8.41 42.66 3.84
2129 2304 1.862147 CGACCACGACGACGATGAC 60.862 63.158 15.32 4.03 42.66 3.06
2131 2306 1.919956 GACCACGACGACGATGACCT 61.920 60.000 15.32 0.00 42.66 3.85
2132 2307 1.211969 CCACGACGACGATGACCTT 59.788 57.895 15.32 0.00 42.66 3.50
2133 2308 1.071019 CCACGACGACGATGACCTTG 61.071 60.000 15.32 0.00 42.66 3.61
2134 2309 0.109919 CACGACGACGATGACCTTGA 60.110 55.000 15.32 0.00 42.66 3.02
2135 2310 0.594602 ACGACGACGATGACCTTGAA 59.405 50.000 15.32 0.00 42.66 2.69
2136 2311 0.982673 CGACGACGATGACCTTGAAC 59.017 55.000 0.00 0.00 42.66 3.18
2137 2312 0.982673 GACGACGATGACCTTGAACG 59.017 55.000 0.00 0.00 0.00 3.95
2138 2313 1.007336 ACGACGATGACCTTGAACGC 61.007 55.000 0.00 0.00 0.00 4.84
2139 2314 1.683790 CGACGATGACCTTGAACGCC 61.684 60.000 0.00 0.00 0.00 5.68
2140 2315 0.669318 GACGATGACCTTGAACGCCA 60.669 55.000 0.00 0.00 0.00 5.69
2141 2316 0.250124 ACGATGACCTTGAACGCCAA 60.250 50.000 0.00 0.00 0.00 4.52
2154 2329 2.357034 GCCAAGCTGGTCGACGAA 60.357 61.111 9.92 0.00 40.46 3.85
2329 2512 2.234913 GACGTCCACCCGGCAATACT 62.235 60.000 3.51 0.00 35.41 2.12
2342 2525 1.080298 CAATACTGTGGCGCCGTTAA 58.920 50.000 23.90 6.34 0.00 2.01
2368 2560 4.930696 TGGAGAGTACCTTGATGACTACA 58.069 43.478 0.00 0.00 0.00 2.74
2412 2604 2.802787 ACGTCCTCGATCATTGATCC 57.197 50.000 18.67 5.64 35.83 3.36
2434 2645 1.736586 GAGCTGTGGATCGACCGAT 59.263 57.895 4.42 4.42 42.61 4.18
2436 2647 0.537188 AGCTGTGGATCGACCGATTT 59.463 50.000 5.33 0.00 42.61 2.17
2450 2661 2.159761 ACCGATTTGTCGCGTGTAAATG 60.160 45.455 17.61 10.06 0.00 2.32
2464 2675 5.678616 GCGTGTAAATGGAAATAATGGCTGT 60.679 40.000 0.00 0.00 0.00 4.40
2472 2683 1.229428 AATAATGGCTGTGCGGATCG 58.771 50.000 0.00 0.00 0.00 3.69
2479 2690 1.064134 CTGTGCGGATCGTCGATCA 59.936 57.895 30.69 13.23 40.50 2.92
2508 2727 1.615107 GCAACCACTGCGAGTCGTAC 61.615 60.000 15.08 0.00 42.37 3.67
2554 2809 5.105063 CGTCTCATGACAATTAGAAGCTGA 58.895 41.667 0.00 0.00 43.06 4.26
2569 2824 5.140454 AGAAGCTGAAAGTTGGGTATTGTT 58.860 37.500 0.00 0.00 35.30 2.83
2581 2836 3.754323 TGGGTATTGTTTTAGTTGAGCCG 59.246 43.478 0.00 0.00 0.00 5.52
2583 2838 4.094442 GGGTATTGTTTTAGTTGAGCCGAG 59.906 45.833 0.00 0.00 0.00 4.63
2599 2854 3.145228 GAGGCTTTTGTCTCTCCCG 57.855 57.895 0.00 0.00 46.98 5.14
2626 2882 7.337942 AGTGACTGAGAAGTGAACAGAATTTTT 59.662 33.333 0.00 0.00 35.85 1.94
2630 2886 9.178758 ACTGAGAAGTGAACAGAATTTTTAGTT 57.821 29.630 0.00 0.00 35.85 2.24
2661 2917 4.082408 CACTCCACTCCACGACTTTATGTA 60.082 45.833 0.00 0.00 0.00 2.29
2690 2946 7.765695 TTAGCTTCATGTTTCTGAATTTCCT 57.234 32.000 0.00 0.00 34.76 3.36
2691 2947 6.661304 AGCTTCATGTTTCTGAATTTCCTT 57.339 33.333 0.00 0.00 34.76 3.36
2692 2948 6.685657 AGCTTCATGTTTCTGAATTTCCTTC 58.314 36.000 0.00 0.00 34.76 3.46
2693 2949 6.492772 AGCTTCATGTTTCTGAATTTCCTTCT 59.507 34.615 0.00 0.00 34.76 2.85
2694 2950 7.667219 AGCTTCATGTTTCTGAATTTCCTTCTA 59.333 33.333 0.00 0.00 34.76 2.10
2699 2955 8.668353 CATGTTTCTGAATTTCCTTCTATTCGA 58.332 33.333 0.00 0.00 34.29 3.71
2700 2956 8.615878 TGTTTCTGAATTTCCTTCTATTCGAA 57.384 30.769 0.00 0.00 34.29 3.71
2736 3048 9.841880 TGCTAAACATATAAAAATTTACACGCA 57.158 25.926 0.00 0.00 0.00 5.24
2749 3061 8.905103 AAATTTACACGCAATTACATCCTAAC 57.095 30.769 0.00 0.00 0.00 2.34
2750 3062 7.859325 ATTTACACGCAATTACATCCTAACT 57.141 32.000 0.00 0.00 0.00 2.24
2751 3063 8.951787 ATTTACACGCAATTACATCCTAACTA 57.048 30.769 0.00 0.00 0.00 2.24
2752 3064 7.997107 TTACACGCAATTACATCCTAACTAG 57.003 36.000 0.00 0.00 0.00 2.57
2777 3089 8.322828 AGGATTCTTTCTTTCTAACTAACCTCC 58.677 37.037 0.00 0.00 0.00 4.30
2778 3090 7.553402 GGATTCTTTCTTTCTAACTAACCTCCC 59.447 40.741 0.00 0.00 0.00 4.30
2781 3093 4.431158 TCTTTCTAACTAACCTCCCCCT 57.569 45.455 0.00 0.00 0.00 4.79
2782 3094 4.101856 TCTTTCTAACTAACCTCCCCCTG 58.898 47.826 0.00 0.00 0.00 4.45
2784 3096 4.363546 TTCTAACTAACCTCCCCCTGAT 57.636 45.455 0.00 0.00 0.00 2.90
2785 3097 4.363546 TCTAACTAACCTCCCCCTGATT 57.636 45.455 0.00 0.00 0.00 2.57
2825 4445 1.670811 GTCCTGACACATTAATGGCCG 59.329 52.381 19.37 9.79 0.00 6.13
2826 4446 1.280710 TCCTGACACATTAATGGCCGT 59.719 47.619 19.37 12.73 0.00 5.68
2905 4525 2.280797 GCGACACAGGTGCCAGAA 60.281 61.111 0.00 0.00 0.00 3.02
2917 4537 2.417586 GGTGCCAGAAATAACGGTGTAC 59.582 50.000 0.00 0.00 0.00 2.90
2956 4576 2.030540 CCACACCAGCTCAAACTTCATG 60.031 50.000 0.00 0.00 0.00 3.07
2976 4596 0.250467 GGCAGAACAACAGAGCCTGA 60.250 55.000 8.91 0.00 42.01 3.86
3006 4626 1.999295 TCCAAATGTCATCCTGGGGAA 59.001 47.619 12.00 0.00 34.34 3.97
3016 4636 3.906980 CTGGGGAACTCACCTGGT 58.093 61.111 0.00 0.00 41.04 4.00
3017 4637 1.679898 CTGGGGAACTCACCTGGTC 59.320 63.158 0.00 0.00 41.04 4.02
3018 4638 1.842381 CTGGGGAACTCACCTGGTCC 61.842 65.000 0.00 0.00 41.04 4.46
3019 4639 1.539124 GGGGAACTCACCTGGTCCT 60.539 63.158 0.00 0.00 36.20 3.85
3020 4640 1.679898 GGGAACTCACCTGGTCCTG 59.320 63.158 0.00 0.00 0.00 3.86
3021 4641 1.679898 GGAACTCACCTGGTCCTGG 59.320 63.158 13.13 13.13 0.00 4.45
3022 4642 1.128188 GGAACTCACCTGGTCCTGGT 61.128 60.000 14.54 14.54 36.11 4.00
3051 4671 1.299648 CCCTTCCACCGATCAGCAA 59.700 57.895 0.00 0.00 0.00 3.91
3054 4674 1.679944 CCTTCCACCGATCAGCAACAT 60.680 52.381 0.00 0.00 0.00 2.71
3055 4675 1.399440 CTTCCACCGATCAGCAACATG 59.601 52.381 0.00 0.00 0.00 3.21
3058 4678 1.131126 CCACCGATCAGCAACATGAAC 59.869 52.381 0.00 0.00 31.76 3.18
3103 4726 1.234615 ACGGCGAAAACCTGGTGATG 61.235 55.000 16.62 0.00 0.00 3.07
3106 4729 0.521735 GCGAAAACCTGGTGATGTCC 59.478 55.000 0.00 0.00 0.00 4.02
3119 4742 3.196207 ATGTCCACGGTGCTGCCTT 62.196 57.895 1.68 0.00 34.25 4.35
3139 4762 1.911057 TGTCAAGAAGAGCTCTCGGA 58.089 50.000 18.55 9.44 31.02 4.55
3172 4795 1.450312 GGACAGGTTCGCCTCCATG 60.450 63.158 0.00 0.00 46.86 3.66
3180 4803 1.541310 TTCGCCTCCATGACCGTTCT 61.541 55.000 0.00 0.00 0.00 3.01
3194 4817 2.364324 ACCGTTCTGTACAGCTTCAGAA 59.636 45.455 18.45 16.73 44.80 3.02
3234 4857 2.957402 TTCAGGTTGTTCCTCAGCAT 57.043 45.000 0.00 0.00 46.24 3.79
3250 4873 2.346847 CAGCATGCTTGAGTAGACGTTC 59.653 50.000 19.98 0.00 0.00 3.95
3253 4876 3.838120 CATGCTTGAGTAGACGTTCAGA 58.162 45.455 0.00 0.00 0.00 3.27
3262 4885 0.734253 AGACGTTCAGATGCACGAGC 60.734 55.000 11.80 0.00 36.84 5.03
3279 4902 2.029666 CGACCCCTCCATCATCGC 59.970 66.667 0.00 0.00 0.00 4.58
3301 4924 1.055040 CCAGCTCCTTCCCTATCAGG 58.945 60.000 0.00 0.00 34.30 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.799213 CCTCTCTGACCAAACATTCTACTT 58.201 41.667 0.00 0.00 0.00 2.24
12 13 4.323104 GCCTCTCTGACCAAACATTCTACT 60.323 45.833 0.00 0.00 0.00 2.57
13 14 3.935828 GCCTCTCTGACCAAACATTCTAC 59.064 47.826 0.00 0.00 0.00 2.59
72 73 3.379372 GCTGCTCTGCATCCTTAATGAAA 59.621 43.478 0.00 0.00 38.13 2.69
124 125 4.668576 ATATGAACAACGTCAGCACTTG 57.331 40.909 0.00 0.00 0.00 3.16
131 132 6.163476 ACTAGCAAGAATATGAACAACGTCA 58.837 36.000 0.00 0.00 0.00 4.35
154 155 1.232621 GCGTGGACCCAGTTTGGTAC 61.233 60.000 0.00 0.00 39.24 3.34
158 159 1.156736 CTAAGCGTGGACCCAGTTTG 58.843 55.000 0.00 0.00 0.00 2.93
161 162 0.834687 TTCCTAAGCGTGGACCCAGT 60.835 55.000 0.00 0.00 32.65 4.00
167 168 3.101437 TCCTAATGTTCCTAAGCGTGGA 58.899 45.455 0.00 0.00 0.00 4.02
180 181 4.935808 CGCAGTTAGTTTCCTTCCTAATGT 59.064 41.667 0.00 0.00 0.00 2.71
186 187 0.442699 CGCGCAGTTAGTTTCCTTCC 59.557 55.000 8.75 0.00 0.00 3.46
191 192 1.421382 TGGTACGCGCAGTTAGTTTC 58.579 50.000 5.73 0.00 0.00 2.78
202 203 0.581529 CCATATGCTGTTGGTACGCG 59.418 55.000 3.53 3.53 0.00 6.01
209 210 6.261603 ACACATCTGATAACCATATGCTGTTG 59.738 38.462 7.40 2.33 33.95 3.33
239 240 1.565156 TTGCAACCAGACATCGCGAC 61.565 55.000 12.93 0.00 0.00 5.19
242 243 0.110056 CAGTTGCAACCAGACATCGC 60.110 55.000 25.62 0.00 0.00 4.58
257 258 1.498865 CCGAGCACGAAACAGCAGTT 61.499 55.000 4.70 0.00 42.66 3.16
267 268 0.108804 GTCTTTGATCCCGAGCACGA 60.109 55.000 4.70 0.00 42.66 4.35
270 271 2.749076 CAATTGTCTTTGATCCCGAGCA 59.251 45.455 0.00 0.00 0.00 4.26
273 274 7.254761 CGATTATTCAATTGTCTTTGATCCCGA 60.255 37.037 5.13 0.00 35.64 5.14
276 277 9.956720 ATTCGATTATTCAATTGTCTTTGATCC 57.043 29.630 5.13 0.00 35.64 3.36
347 350 5.528043 AAACAAGCCACATGTAAACATCA 57.472 34.783 0.00 0.00 33.61 3.07
348 351 7.700656 GGTATAAACAAGCCACATGTAAACATC 59.299 37.037 0.00 0.00 33.61 3.06
349 352 7.396055 AGGTATAAACAAGCCACATGTAAACAT 59.604 33.333 0.00 0.00 36.96 2.71
351 354 7.027161 CAGGTATAAACAAGCCACATGTAAAC 58.973 38.462 0.00 0.00 0.00 2.01
378 381 3.890756 TGAGTGCTGACATGGTGATTTTT 59.109 39.130 0.00 0.00 0.00 1.94
379 382 3.489355 TGAGTGCTGACATGGTGATTTT 58.511 40.909 0.00 0.00 0.00 1.82
380 383 3.144657 TGAGTGCTGACATGGTGATTT 57.855 42.857 0.00 0.00 0.00 2.17
381 384 2.816087 GTTGAGTGCTGACATGGTGATT 59.184 45.455 0.00 0.00 0.00 2.57
382 385 2.224597 TGTTGAGTGCTGACATGGTGAT 60.225 45.455 0.00 0.00 0.00 3.06
383 386 1.140652 TGTTGAGTGCTGACATGGTGA 59.859 47.619 0.00 0.00 0.00 4.02
384 387 1.596603 TGTTGAGTGCTGACATGGTG 58.403 50.000 0.00 0.00 0.00 4.17
385 388 2.156917 CATGTTGAGTGCTGACATGGT 58.843 47.619 13.26 0.00 44.19 3.55
386 389 2.913777 CATGTTGAGTGCTGACATGG 57.086 50.000 13.26 0.00 44.19 3.66
387 390 2.429478 TCCATGTTGAGTGCTGACATG 58.571 47.619 13.77 13.77 46.29 3.21
388 391 2.816087 GTTCCATGTTGAGTGCTGACAT 59.184 45.455 0.00 0.00 34.52 3.06
389 392 2.221169 GTTCCATGTTGAGTGCTGACA 58.779 47.619 0.00 0.00 0.00 3.58
390 393 2.031682 GTGTTCCATGTTGAGTGCTGAC 60.032 50.000 0.00 0.00 0.00 3.51
391 394 2.158769 AGTGTTCCATGTTGAGTGCTGA 60.159 45.455 0.00 0.00 0.00 4.26
392 395 2.224606 AGTGTTCCATGTTGAGTGCTG 58.775 47.619 0.00 0.00 0.00 4.41
393 396 2.498167 GAGTGTTCCATGTTGAGTGCT 58.502 47.619 0.00 0.00 0.00 4.40
394 397 1.195448 CGAGTGTTCCATGTTGAGTGC 59.805 52.381 0.00 0.00 0.00 4.40
395 398 1.800586 CCGAGTGTTCCATGTTGAGTG 59.199 52.381 0.00 0.00 0.00 3.51
396 399 1.878102 GCCGAGTGTTCCATGTTGAGT 60.878 52.381 0.00 0.00 0.00 3.41
397 400 0.798776 GCCGAGTGTTCCATGTTGAG 59.201 55.000 0.00 0.00 0.00 3.02
398 401 0.948623 CGCCGAGTGTTCCATGTTGA 60.949 55.000 0.00 0.00 0.00 3.18
399 402 1.497278 CGCCGAGTGTTCCATGTTG 59.503 57.895 0.00 0.00 0.00 3.33
400 403 2.325082 GCGCCGAGTGTTCCATGTT 61.325 57.895 0.00 0.00 0.00 2.71
401 404 2.742372 GCGCCGAGTGTTCCATGT 60.742 61.111 0.00 0.00 0.00 3.21
402 405 2.434884 AGCGCCGAGTGTTCCATG 60.435 61.111 2.29 0.00 0.00 3.66
403 406 2.125512 GAGCGCCGAGTGTTCCAT 60.126 61.111 2.29 0.00 0.00 3.41
404 407 4.717629 CGAGCGCCGAGTGTTCCA 62.718 66.667 2.29 0.00 41.76 3.53
405 408 4.415332 TCGAGCGCCGAGTGTTCC 62.415 66.667 15.44 0.00 43.23 3.62
412 415 4.415332 GGAACACTCGAGCGCCGA 62.415 66.667 13.61 17.76 46.35 5.54
413 416 4.717629 TGGAACACTCGAGCGCCG 62.718 66.667 13.61 8.02 40.25 6.46
436 439 2.030007 TCATTAACCTGCTGCTTGTTGC 60.030 45.455 14.63 0.00 43.25 4.17
437 440 3.921119 TCATTAACCTGCTGCTTGTTG 57.079 42.857 14.63 3.00 0.00 3.33
439 442 6.183360 GGATATTTCATTAACCTGCTGCTTGT 60.183 38.462 0.00 0.00 0.00 3.16
440 443 6.040166 AGGATATTTCATTAACCTGCTGCTTG 59.960 38.462 0.00 0.00 0.00 4.01
442 445 5.699143 AGGATATTTCATTAACCTGCTGCT 58.301 37.500 0.00 0.00 0.00 4.24
443 446 6.039717 TCAAGGATATTTCATTAACCTGCTGC 59.960 38.462 0.00 0.00 0.00 5.25
444 447 7.572523 TCAAGGATATTTCATTAACCTGCTG 57.427 36.000 0.00 0.00 0.00 4.41
445 448 9.289782 GTATCAAGGATATTTCATTAACCTGCT 57.710 33.333 0.00 0.00 0.00 4.24
446 449 9.289782 AGTATCAAGGATATTTCATTAACCTGC 57.710 33.333 0.00 0.00 0.00 4.85
488 491 0.995024 ACCTCCTTGCTAGCAACCAT 59.005 50.000 26.06 7.51 0.00 3.55
498 501 2.609459 CGATGTATGTTGACCTCCTTGC 59.391 50.000 0.00 0.00 0.00 4.01
508 511 3.625313 TGGGTGTATTGCGATGTATGTTG 59.375 43.478 0.00 0.00 0.00 3.33
524 527 0.107606 TTACAGCACGTGTTGGGTGT 60.108 50.000 31.62 21.86 46.36 4.16
547 551 2.313172 CGTGCTGTGCAGTGGAGAC 61.313 63.158 0.00 0.00 40.08 3.36
549 553 2.029518 TCGTGCTGTGCAGTGGAG 59.970 61.111 0.00 0.00 40.08 3.86
598 602 2.434336 ACATACATCGCTTTCTGGCCTA 59.566 45.455 3.32 0.00 0.00 3.93
605 609 6.371809 TTTGGGATAACATACATCGCTTTC 57.628 37.500 0.00 0.00 36.57 2.62
606 610 5.299279 CCTTTGGGATAACATACATCGCTTT 59.701 40.000 0.00 0.00 36.57 3.51
635 639 2.672996 CTGCCCGTCAGGTTTGGG 60.673 66.667 0.00 0.00 46.22 4.12
636 640 3.365265 GCTGCCCGTCAGGTTTGG 61.365 66.667 4.43 0.00 43.06 3.28
669 673 4.728882 GCGTCATTGCTGGAATCTTTGTAG 60.729 45.833 0.00 0.00 0.00 2.74
670 674 3.126858 GCGTCATTGCTGGAATCTTTGTA 59.873 43.478 0.00 0.00 0.00 2.41
672 676 2.523015 GCGTCATTGCTGGAATCTTTG 58.477 47.619 0.00 0.00 0.00 2.77
673 677 1.131126 CGCGTCATTGCTGGAATCTTT 59.869 47.619 0.00 0.00 0.00 2.52
675 679 1.091771 CCGCGTCATTGCTGGAATCT 61.092 55.000 4.92 0.00 32.62 2.40
676 680 1.353103 CCGCGTCATTGCTGGAATC 59.647 57.895 4.92 0.00 32.62 2.52
677 681 2.764314 GCCGCGTCATTGCTGGAAT 61.764 57.895 4.92 0.00 32.62 3.01
722 726 4.357947 TCAGTGCGTGACGAGGGC 62.358 66.667 10.10 0.00 0.00 5.19
732 736 0.166597 AATTGCATGTCGTCAGTGCG 59.833 50.000 0.00 1.21 41.61 5.34
735 739 3.679980 GTGACTAATTGCATGTCGTCAGT 59.320 43.478 8.94 0.00 32.71 3.41
745 749 1.951181 GCGACGCGTGACTAATTGCA 61.951 55.000 20.70 0.00 0.00 4.08
746 750 1.295930 GCGACGCGTGACTAATTGC 60.296 57.895 20.70 0.70 0.00 3.56
748 752 0.801067 GGAGCGACGCGTGACTAATT 60.801 55.000 20.70 0.00 0.00 1.40
749 753 1.226603 GGAGCGACGCGTGACTAAT 60.227 57.895 20.70 0.00 0.00 1.73
751 755 2.249557 GAAGGAGCGACGCGTGACTA 62.250 60.000 20.70 0.00 0.00 2.59
752 756 3.612371 GAAGGAGCGACGCGTGACT 62.612 63.158 20.70 14.41 0.00 3.41
777 782 1.726192 GGGGTTGTCAAGGGGGAAGT 61.726 60.000 0.00 0.00 0.00 3.01
789 794 1.536676 CTTGGTGTGGAGGGGTTGT 59.463 57.895 0.00 0.00 0.00 3.32
790 795 1.228552 CCTTGGTGTGGAGGGGTTG 60.229 63.158 0.00 0.00 0.00 3.77
791 796 0.996762 TTCCTTGGTGTGGAGGGGTT 60.997 55.000 0.00 0.00 34.76 4.11
792 797 1.386772 TTCCTTGGTGTGGAGGGGT 60.387 57.895 0.00 0.00 34.76 4.95
793 798 1.074951 GTTCCTTGGTGTGGAGGGG 59.925 63.158 0.00 0.00 34.76 4.79
811 817 2.029110 ACTGGCAAAATTGGACAATCGG 60.029 45.455 0.00 0.00 0.00 4.18
813 819 3.989817 GTGACTGGCAAAATTGGACAATC 59.010 43.478 0.00 0.00 0.00 2.67
814 820 3.552684 CGTGACTGGCAAAATTGGACAAT 60.553 43.478 0.00 0.00 0.00 2.71
815 821 2.223688 CGTGACTGGCAAAATTGGACAA 60.224 45.455 0.00 0.00 0.00 3.18
817 823 1.930371 GCGTGACTGGCAAAATTGGAC 60.930 52.381 0.00 0.00 0.00 4.02
819 825 0.031857 TGCGTGACTGGCAAAATTGG 59.968 50.000 0.00 0.00 37.49 3.16
820 826 1.130955 GTGCGTGACTGGCAAAATTG 58.869 50.000 0.00 0.00 42.92 2.32
821 827 0.317770 CGTGCGTGACTGGCAAAATT 60.318 50.000 0.00 0.00 42.92 1.82
823 829 2.712539 CGTGCGTGACTGGCAAAA 59.287 55.556 0.00 0.00 42.92 2.44
824 830 3.947841 GCGTGCGTGACTGGCAAA 61.948 61.111 0.00 0.00 42.92 3.68
825 831 4.908687 AGCGTGCGTGACTGGCAA 62.909 61.111 0.00 0.00 42.92 4.52
827 833 4.077188 GAAGCGTGCGTGACTGGC 62.077 66.667 0.00 0.00 0.00 4.85
831 837 3.764049 GTCCGAAGCGTGCGTGAC 61.764 66.667 0.00 0.00 0.00 3.67
837 843 4.717629 TCAGCCGTCCGAAGCGTG 62.718 66.667 0.00 0.00 0.00 5.34
838 844 3.986006 TTCAGCCGTCCGAAGCGT 61.986 61.111 0.00 0.00 0.00 5.07
839 845 3.479269 GTTCAGCCGTCCGAAGCG 61.479 66.667 0.00 0.00 0.00 4.68
840 846 3.119096 GGTTCAGCCGTCCGAAGC 61.119 66.667 0.00 0.00 33.05 3.86
841 847 2.434359 GGGTTCAGCCGTCCGAAG 60.434 66.667 0.00 0.00 38.44 3.79
842 848 4.367023 CGGGTTCAGCCGTCCGAA 62.367 66.667 9.33 0.00 44.69 4.30
894 900 0.245539 CGTTACACTGATCGGTGGGT 59.754 55.000 32.69 18.72 41.09 4.51
917 923 4.063967 TGTAGGGGTGCTCGTGCG 62.064 66.667 4.84 0.00 43.34 5.34
928 934 1.486211 CAGGTAGGTGAGGTGTAGGG 58.514 60.000 0.00 0.00 0.00 3.53
929 935 0.824759 GCAGGTAGGTGAGGTGTAGG 59.175 60.000 0.00 0.00 0.00 3.18
934 940 2.603473 TGCGCAGGTAGGTGAGGT 60.603 61.111 5.66 0.00 0.00 3.85
972 982 2.173382 CAACTACTTGTGCGCGCC 59.827 61.111 30.77 20.33 0.00 6.53
982 994 4.821935 GGCTGGTTGGCAACTACT 57.178 55.556 27.77 0.00 42.34 2.57
997 1009 5.749109 GGTTCGTGCTATATACTATCATGGC 59.251 44.000 0.00 0.00 0.00 4.40
998 1010 7.101652 AGGTTCGTGCTATATACTATCATGG 57.898 40.000 0.00 0.00 0.00 3.66
999 1011 7.702772 GGAAGGTTCGTGCTATATACTATCATG 59.297 40.741 0.00 0.00 0.00 3.07
1000 1012 7.616150 AGGAAGGTTCGTGCTATATACTATCAT 59.384 37.037 0.00 0.00 0.00 2.45
1001 1013 6.946583 AGGAAGGTTCGTGCTATATACTATCA 59.053 38.462 0.00 0.00 0.00 2.15
1002 1014 7.393841 AGGAAGGTTCGTGCTATATACTATC 57.606 40.000 0.00 0.00 0.00 2.08
1003 1015 7.093858 GGAAGGAAGGTTCGTGCTATATACTAT 60.094 40.741 0.00 0.00 0.00 2.12
1004 1016 6.208204 GGAAGGAAGGTTCGTGCTATATACTA 59.792 42.308 0.00 0.00 0.00 1.82
1005 1017 5.010820 GGAAGGAAGGTTCGTGCTATATACT 59.989 44.000 0.00 0.00 0.00 2.12
1006 1018 5.010820 AGGAAGGAAGGTTCGTGCTATATAC 59.989 44.000 0.00 0.00 0.00 1.47
1014 1026 0.601558 TCGAGGAAGGAAGGTTCGTG 59.398 55.000 0.00 0.00 33.35 4.35
1054 1066 1.598962 CCAGTGATATGGGGCAGCG 60.599 63.158 0.00 0.00 36.64 5.18
1060 1072 1.059098 TAGCCAGCCAGTGATATGGG 58.941 55.000 9.42 0.00 40.97 4.00
1090 1111 2.054140 CTCTCCCGCTCTAGCACGAC 62.054 65.000 2.44 0.00 42.21 4.34
1092 1113 2.115911 ACTCTCCCGCTCTAGCACG 61.116 63.158 2.44 0.00 42.21 5.34
1131 1155 2.735478 TACGGCGTTCCAAGCACG 60.735 61.111 21.24 0.00 40.75 5.34
1144 1168 0.744874 ATCTCCATGGACACGTACGG 59.255 55.000 21.06 11.05 0.00 4.02
1155 1179 1.050988 ACGGGGTCTCCATCTCCATG 61.051 60.000 0.00 0.00 34.36 3.66
1156 1180 0.326618 AACGGGGTCTCCATCTCCAT 60.327 55.000 0.00 0.00 34.36 3.41
1159 1183 1.522569 CCAACGGGGTCTCCATCTC 59.477 63.158 0.00 0.00 34.36 2.75
1193 1226 4.883354 CCCGCCCCTTGATCAGGC 62.883 72.222 13.22 13.22 42.29 4.85
1331 1379 3.833645 TACCGCTGGTAGCAGCCG 61.834 66.667 34.43 30.34 44.84 5.52
1339 1387 0.966370 GACCTCTCACTACCGCTGGT 60.966 60.000 5.58 5.58 40.16 4.00
1342 1390 0.394625 GAGGACCTCTCACTACCGCT 60.395 60.000 14.72 0.00 42.02 5.52
1343 1391 1.716826 CGAGGACCTCTCACTACCGC 61.717 65.000 19.39 0.00 42.55 5.68
1344 1392 1.096386 CCGAGGACCTCTCACTACCG 61.096 65.000 19.39 4.04 42.55 4.02
1345 1393 0.255318 TCCGAGGACCTCTCACTACC 59.745 60.000 19.39 0.00 42.55 3.18
1346 1394 1.381522 GTCCGAGGACCTCTCACTAC 58.618 60.000 19.39 6.40 42.55 2.73
1347 1395 0.107800 CGTCCGAGGACCTCTCACTA 60.108 60.000 19.39 0.00 42.55 2.74
1350 1398 1.674651 CACGTCCGAGGACCTCTCA 60.675 63.158 19.39 2.55 42.55 3.27
1371 1419 1.379443 ACCATCGGTGACCTCGCTA 60.379 57.895 0.00 0.00 32.98 4.26
1469 1524 4.425577 ACAAATCAAAGAATCGTGAGCC 57.574 40.909 0.00 0.00 0.00 4.70
1496 1551 7.875041 CGAGGGAGATTATGTCAAGAATAACAT 59.125 37.037 0.00 0.00 39.38 2.71
1497 1552 7.147724 ACGAGGGAGATTATGTCAAGAATAACA 60.148 37.037 0.00 0.00 0.00 2.41
1498 1553 7.210873 ACGAGGGAGATTATGTCAAGAATAAC 58.789 38.462 0.00 0.00 0.00 1.89
1499 1554 7.361457 ACGAGGGAGATTATGTCAAGAATAA 57.639 36.000 0.00 0.00 0.00 1.40
1500 1555 6.978674 ACGAGGGAGATTATGTCAAGAATA 57.021 37.500 0.00 0.00 0.00 1.75
1501 1556 5.878406 ACGAGGGAGATTATGTCAAGAAT 57.122 39.130 0.00 0.00 0.00 2.40
1502 1557 5.677319 AACGAGGGAGATTATGTCAAGAA 57.323 39.130 0.00 0.00 0.00 2.52
1503 1558 6.785337 TTAACGAGGGAGATTATGTCAAGA 57.215 37.500 0.00 0.00 0.00 3.02
1504 1559 9.542462 TTAATTAACGAGGGAGATTATGTCAAG 57.458 33.333 0.00 0.00 0.00 3.02
1505 1560 9.321562 GTTAATTAACGAGGGAGATTATGTCAA 57.678 33.333 12.39 0.00 0.00 3.18
1506 1561 8.701895 AGTTAATTAACGAGGGAGATTATGTCA 58.298 33.333 19.92 0.00 40.96 3.58
1507 1562 8.979574 CAGTTAATTAACGAGGGAGATTATGTC 58.020 37.037 19.92 0.00 40.96 3.06
1508 1563 7.931948 CCAGTTAATTAACGAGGGAGATTATGT 59.068 37.037 24.04 3.96 40.96 2.29
1509 1564 8.148351 TCCAGTTAATTAACGAGGGAGATTATG 58.852 37.037 27.78 15.76 40.96 1.90
1510 1565 8.258850 TCCAGTTAATTAACGAGGGAGATTAT 57.741 34.615 27.78 7.45 40.96 1.28
1511 1566 7.664552 TCCAGTTAATTAACGAGGGAGATTA 57.335 36.000 27.78 14.46 40.96 1.75
1512 1567 6.555463 TCCAGTTAATTAACGAGGGAGATT 57.445 37.500 27.78 8.40 40.96 2.40
1513 1568 6.099845 ACATCCAGTTAATTAACGAGGGAGAT 59.900 38.462 27.64 20.62 40.96 2.75
1564 1631 4.823790 ACGCCAAATTACGAAAAGAAGT 57.176 36.364 0.00 0.00 0.00 3.01
1565 1632 4.143618 GCAACGCCAAATTACGAAAAGAAG 60.144 41.667 0.00 0.00 0.00 2.85
1566 1633 3.731717 GCAACGCCAAATTACGAAAAGAA 59.268 39.130 0.00 0.00 0.00 2.52
1567 1634 3.243101 TGCAACGCCAAATTACGAAAAGA 60.243 39.130 0.00 0.00 0.00 2.52
1568 1635 3.046390 TGCAACGCCAAATTACGAAAAG 58.954 40.909 0.00 0.00 0.00 2.27
1569 1636 3.046390 CTGCAACGCCAAATTACGAAAA 58.954 40.909 0.00 0.00 0.00 2.29
1571 1638 1.068885 CCTGCAACGCCAAATTACGAA 60.069 47.619 0.00 0.00 0.00 3.85
1573 1640 0.519519 TCCTGCAACGCCAAATTACG 59.480 50.000 0.00 0.00 0.00 3.18
1574 1641 1.402325 GGTCCTGCAACGCCAAATTAC 60.402 52.381 0.00 0.00 0.00 1.89
1575 1642 0.885196 GGTCCTGCAACGCCAAATTA 59.115 50.000 0.00 0.00 0.00 1.40
1576 1643 1.665442 GGTCCTGCAACGCCAAATT 59.335 52.632 0.00 0.00 0.00 1.82
1600 1684 1.791283 CTTCGTGACGACGGACGAC 60.791 63.158 19.88 0.85 43.91 4.34
1621 1705 0.318699 CGTCGTCCAAGCTCTTCACA 60.319 55.000 0.00 0.00 0.00 3.58
1622 1706 1.009389 CCGTCGTCCAAGCTCTTCAC 61.009 60.000 0.00 0.00 0.00 3.18
1703 1787 1.146930 GATCATTGGCGGGCAGAGA 59.853 57.895 3.91 7.38 0.00 3.10
1704 1788 0.536687 ATGATCATTGGCGGGCAGAG 60.537 55.000 1.18 1.61 0.00 3.35
1712 1818 9.929180 TTATTACTAGTAGTGATGATCATTGGC 57.071 33.333 15.88 3.52 0.00 4.52
1729 1848 7.119553 TGGTGGTTTTTAGCGGTTTATTACTAG 59.880 37.037 0.00 0.00 0.00 2.57
1734 1853 4.021807 CCTGGTGGTTTTTAGCGGTTTATT 60.022 41.667 0.00 0.00 0.00 1.40
1736 1855 2.885894 CCTGGTGGTTTTTAGCGGTTTA 59.114 45.455 0.00 0.00 0.00 2.01
1737 1856 1.684450 CCTGGTGGTTTTTAGCGGTTT 59.316 47.619 0.00 0.00 0.00 3.27
1738 1857 1.324383 CCTGGTGGTTTTTAGCGGTT 58.676 50.000 0.00 0.00 0.00 4.44
1739 1858 0.184211 ACCTGGTGGTTTTTAGCGGT 59.816 50.000 0.00 0.00 46.05 5.68
1756 1876 0.028902 GCACTGTTTGTCGTTCCACC 59.971 55.000 0.00 0.00 0.00 4.61
1771 1914 0.035056 GCATGGTTGGTAGGAGCACT 60.035 55.000 0.00 0.00 0.00 4.40
1772 1915 1.032114 GGCATGGTTGGTAGGAGCAC 61.032 60.000 0.00 0.00 0.00 4.40
1776 1919 1.302949 GCAGGCATGGTTGGTAGGA 59.697 57.895 0.00 0.00 0.00 2.94
1777 1920 0.611618 TTGCAGGCATGGTTGGTAGG 60.612 55.000 0.00 0.00 0.00 3.18
1779 1922 1.272369 TGATTGCAGGCATGGTTGGTA 60.272 47.619 0.00 0.00 0.00 3.25
1787 1930 1.700955 GAGGGATTGATTGCAGGCAT 58.299 50.000 0.00 0.00 0.00 4.40
2017 2177 4.101448 GCCGGTGAGGTGGAGCAT 62.101 66.667 1.90 0.00 43.70 3.79
2118 2293 0.982673 CGTTCAAGGTCATCGTCGTC 59.017 55.000 0.00 0.00 0.00 4.20
2123 2298 0.443869 CTTGGCGTTCAAGGTCATCG 59.556 55.000 11.20 0.00 46.81 3.84
2131 2306 2.250939 CGACCAGCTTGGCGTTCAA 61.251 57.895 4.55 0.00 42.67 2.69
2132 2307 2.664851 CGACCAGCTTGGCGTTCA 60.665 61.111 4.55 0.00 42.67 3.18
2133 2308 2.357034 TCGACCAGCTTGGCGTTC 60.357 61.111 13.41 0.00 42.67 3.95
2134 2309 2.665185 GTCGACCAGCTTGGCGTT 60.665 61.111 13.41 0.00 42.67 4.84
2136 2311 4.717629 TCGTCGACCAGCTTGGCG 62.718 66.667 6.73 6.73 42.67 5.69
2137 2312 2.357034 TTCGTCGACCAGCTTGGC 60.357 61.111 10.58 0.00 42.67 4.52
2138 2313 1.009389 GTCTTCGTCGACCAGCTTGG 61.009 60.000 10.58 1.16 45.02 3.61
2139 2314 1.337817 CGTCTTCGTCGACCAGCTTG 61.338 60.000 10.58 0.00 0.00 4.01
2140 2315 1.081376 CGTCTTCGTCGACCAGCTT 60.081 57.895 10.58 0.00 0.00 3.74
2141 2316 2.561885 CGTCTTCGTCGACCAGCT 59.438 61.111 10.58 0.00 0.00 4.24
2142 2317 3.173240 GCGTCTTCGTCGACCAGC 61.173 66.667 10.58 3.05 39.49 4.85
2282 2463 4.785453 GGTCGGGCCAAGCAGGAG 62.785 72.222 4.39 0.00 41.22 3.69
2329 2512 1.649815 CAAAGTTAACGGCGCCACA 59.350 52.632 28.98 7.48 0.00 4.17
2342 2525 4.841246 AGTCATCAAGGTACTCTCCAAAGT 59.159 41.667 0.00 0.00 38.49 2.66
2391 2583 3.668226 CGGATCAATGATCGAGGACGTAG 60.668 52.174 16.10 0.00 39.72 3.51
2397 2589 1.266989 TCGACGGATCAATGATCGAGG 59.733 52.381 16.10 10.65 39.72 4.63
2412 2604 2.791927 TCGATCCACAGCTCGACG 59.208 61.111 0.00 0.00 38.86 5.12
2434 2645 3.965292 TTTCCATTTACACGCGACAAA 57.035 38.095 15.93 10.10 0.00 2.83
2436 2647 5.447954 CCATTATTTCCATTTACACGCGACA 60.448 40.000 15.93 0.00 0.00 4.35
2450 2661 1.388547 TCCGCACAGCCATTATTTCC 58.611 50.000 0.00 0.00 0.00 3.13
2464 2675 0.668535 AAGATGATCGACGATCCGCA 59.331 50.000 29.72 16.11 38.20 5.69
2472 2683 0.528466 TGCCGCTCAAGATGATCGAC 60.528 55.000 5.29 0.00 38.15 4.20
2479 2690 0.957395 CAGTGGTTGCCGCTCAAGAT 60.957 55.000 0.00 0.00 43.13 2.40
2501 2720 9.971922 ATAAACTGTACAAACTAAAGTACGACT 57.028 29.630 0.00 0.00 42.62 4.18
2534 2789 7.375106 ACTTTCAGCTTCTAATTGTCATGAG 57.625 36.000 0.00 0.00 0.00 2.90
2554 2809 7.207383 GCTCAACTAAAACAATACCCAACTTT 58.793 34.615 0.00 0.00 0.00 2.66
2581 2836 0.608640 TCGGGAGAGACAAAAGCCTC 59.391 55.000 0.00 0.00 0.00 4.70
2599 2854 4.576216 TCTGTTCACTTCTCAGTCACTC 57.424 45.455 0.00 0.00 0.00 3.51
2626 2882 5.472137 GTGGAGTGGAGTGCAAAATAAACTA 59.528 40.000 0.00 0.00 0.00 2.24
2630 2886 2.811431 CGTGGAGTGGAGTGCAAAATAA 59.189 45.455 0.00 0.00 0.00 1.40
2710 2966 9.841880 TGCGTGTAAATTTTTATATGTTTAGCA 57.158 25.926 0.00 0.00 0.00 3.49
2725 3037 8.276252 AGTTAGGATGTAATTGCGTGTAAATT 57.724 30.769 0.00 0.00 0.00 1.82
2727 3039 7.493320 CCTAGTTAGGATGTAATTGCGTGTAAA 59.507 37.037 0.00 0.00 46.63 2.01
2731 3043 5.907197 CCTAGTTAGGATGTAATTGCGTG 57.093 43.478 0.00 0.00 46.63 5.34
2751 3063 8.322828 GGAGGTTAGTTAGAAAGAAAGAATCCT 58.677 37.037 0.00 0.00 0.00 3.24
2752 3064 7.553402 GGGAGGTTAGTTAGAAAGAAAGAATCC 59.447 40.741 0.00 0.00 0.00 3.01
2754 3066 7.403671 GGGGAGGTTAGTTAGAAAGAAAGAAT 58.596 38.462 0.00 0.00 0.00 2.40
2755 3067 6.240089 GGGGGAGGTTAGTTAGAAAGAAAGAA 60.240 42.308 0.00 0.00 0.00 2.52
2756 3068 5.250082 GGGGGAGGTTAGTTAGAAAGAAAGA 59.750 44.000 0.00 0.00 0.00 2.52
2758 3070 5.013808 CAGGGGGAGGTTAGTTAGAAAGAAA 59.986 44.000 0.00 0.00 0.00 2.52
2759 3071 4.534897 CAGGGGGAGGTTAGTTAGAAAGAA 59.465 45.833 0.00 0.00 0.00 2.52
2761 3073 4.101856 TCAGGGGGAGGTTAGTTAGAAAG 58.898 47.826 0.00 0.00 0.00 2.62
2762 3074 4.150516 TCAGGGGGAGGTTAGTTAGAAA 57.849 45.455 0.00 0.00 0.00 2.52
2763 3075 3.858696 TCAGGGGGAGGTTAGTTAGAA 57.141 47.619 0.00 0.00 0.00 2.10
2764 3076 4.363546 AATCAGGGGGAGGTTAGTTAGA 57.636 45.455 0.00 0.00 0.00 2.10
2765 3077 5.045140 TGAAAATCAGGGGGAGGTTAGTTAG 60.045 44.000 0.00 0.00 0.00 2.34
2766 3078 4.853276 TGAAAATCAGGGGGAGGTTAGTTA 59.147 41.667 0.00 0.00 0.00 2.24
2767 3079 3.660669 TGAAAATCAGGGGGAGGTTAGTT 59.339 43.478 0.00 0.00 0.00 2.24
2771 3083 1.786441 TGTGAAAATCAGGGGGAGGTT 59.214 47.619 0.00 0.00 0.00 3.50
2772 3084 1.455822 TGTGAAAATCAGGGGGAGGT 58.544 50.000 0.00 0.00 0.00 3.85
2773 3085 2.025037 TGATGTGAAAATCAGGGGGAGG 60.025 50.000 0.00 0.00 32.75 4.30
2774 3086 3.019564 GTGATGTGAAAATCAGGGGGAG 58.980 50.000 0.00 0.00 37.24 4.30
2775 3087 2.617788 CGTGATGTGAAAATCAGGGGGA 60.618 50.000 0.00 0.00 38.30 4.81
2776 3088 1.745087 CGTGATGTGAAAATCAGGGGG 59.255 52.381 0.00 0.00 38.30 5.40
2777 3089 2.679837 CTCGTGATGTGAAAATCAGGGG 59.320 50.000 6.94 0.71 40.94 4.79
2778 3090 2.679837 CCTCGTGATGTGAAAATCAGGG 59.320 50.000 6.94 0.00 40.94 4.45
2781 3093 2.743664 CTGCCTCGTGATGTGAAAATCA 59.256 45.455 0.00 0.00 34.16 2.57
2782 3094 3.002791 TCTGCCTCGTGATGTGAAAATC 58.997 45.455 0.00 0.00 0.00 2.17
2784 3096 2.542020 TCTGCCTCGTGATGTGAAAA 57.458 45.000 0.00 0.00 0.00 2.29
2785 3097 2.349590 CATCTGCCTCGTGATGTGAAA 58.650 47.619 0.00 0.00 36.32 2.69
2816 4436 4.580868 TGTATGTTTCTGACGGCCATTAA 58.419 39.130 2.24 0.00 0.00 1.40
2825 4445 6.561533 CGCCGTACATAATGTATGTTTCTGAC 60.562 42.308 8.47 1.11 46.69 3.51
2826 4446 5.460748 CGCCGTACATAATGTATGTTTCTGA 59.539 40.000 8.47 0.00 46.69 3.27
2896 4516 1.530323 ACACCGTTATTTCTGGCACC 58.470 50.000 0.00 0.00 0.00 5.01
2902 4522 1.207811 CCCCCGTACACCGTTATTTCT 59.792 52.381 0.00 0.00 33.66 2.52
2905 4525 1.221566 GCCCCCGTACACCGTTATT 59.778 57.895 0.00 0.00 33.66 1.40
2932 4552 0.109342 AGTTTGAGCTGGTGTGGGAG 59.891 55.000 0.00 0.00 0.00 4.30
2956 4576 1.073897 AGGCTCTGTTGTTCTGCCC 59.926 57.895 0.00 0.00 44.19 5.36
3006 4626 1.536662 GGACCAGGACCAGGTGAGT 60.537 63.158 14.30 0.00 40.09 3.41
3016 4636 2.683933 GGCTCTTCCGGACCAGGA 60.684 66.667 1.83 0.00 38.79 3.86
3017 4637 3.787001 GGGCTCTTCCGGACCAGG 61.787 72.222 1.83 0.00 34.94 4.45
3018 4638 3.787001 GGGGCTCTTCCGGACCAG 61.787 72.222 1.83 3.64 34.94 4.00
3019 4639 3.864983 AAGGGGCTCTTCCGGACCA 62.865 63.158 1.83 0.00 34.94 4.02
3020 4640 3.009714 AAGGGGCTCTTCCGGACC 61.010 66.667 1.83 0.75 34.94 4.46
3021 4641 2.585153 GAAGGGGCTCTTCCGGAC 59.415 66.667 16.52 0.00 44.60 4.79
3051 4671 2.046314 CCCCGCTTCGGTTCATGT 60.046 61.111 4.47 0.00 46.80 3.21
3054 4674 4.697756 CTGCCCCGCTTCGGTTCA 62.698 66.667 4.47 1.26 46.80 3.18
3091 4714 0.250727 CCGTGGACATCACCAGGTTT 60.251 55.000 0.00 0.00 43.23 3.27
3103 4726 2.594592 AAAGGCAGCACCGTGGAC 60.595 61.111 0.00 0.00 46.52 4.02
3106 4729 1.723608 TTGACAAAGGCAGCACCGTG 61.724 55.000 0.00 0.00 46.52 4.94
3119 4742 2.239400 TCCGAGAGCTCTTCTTGACAA 58.761 47.619 19.36 0.00 39.36 3.18
3163 4786 1.811266 CAGAACGGTCATGGAGGCG 60.811 63.158 1.87 0.00 0.00 5.52
3172 4795 2.030185 TCTGAAGCTGTACAGAACGGTC 60.030 50.000 27.08 14.21 39.68 4.79
3180 4803 0.666274 CCGCGTTCTGAAGCTGTACA 60.666 55.000 4.92 0.00 0.00 2.90
3194 4817 4.379243 CCAGTTCTGGAGCCGCGT 62.379 66.667 13.02 0.00 0.00 6.01
3234 4857 3.838120 CATCTGAACGTCTACTCAAGCA 58.162 45.455 0.00 0.00 0.00 3.91
3250 4873 2.887568 GGGTCGCTCGTGCATCTG 60.888 66.667 10.43 0.00 39.64 2.90
3253 4876 4.148825 GAGGGGTCGCTCGTGCAT 62.149 66.667 10.43 0.00 39.64 3.96
3262 4885 2.029666 GCGATGATGGAGGGGTCG 59.970 66.667 0.00 0.00 35.56 4.79
3279 4902 2.105806 GATAGGGAAGGAGCTGGCGG 62.106 65.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.