Multiple sequence alignment - TraesCS7A01G337900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G337900 chr7A 100.000 3194 0 0 1 3194 494129562 494132755 0.000000e+00 5899.0
1 TraesCS7A01G337900 chr7A 94.595 37 2 0 695 731 493916701 493916737 1.240000e-04 58.4
2 TraesCS7A01G337900 chr7D 94.016 2373 97 33 695 3036 443171054 443173412 0.000000e+00 3554.0
3 TraesCS7A01G337900 chr7D 87.500 160 13 7 504 663 611053618 611053770 9.100000e-41 178.0
4 TraesCS7A01G337900 chr7D 84.472 161 19 5 9 168 462128613 462128458 1.530000e-33 154.0
5 TraesCS7A01G337900 chr7D 100.000 28 0 0 2461 2488 160630935 160630908 6.000000e-03 52.8
6 TraesCS7A01G337900 chr7B 93.536 2367 92 29 697 3033 460602395 460604730 0.000000e+00 3467.0
7 TraesCS7A01G337900 chr7B 82.704 636 60 31 59 666 538575786 538575173 1.310000e-143 520.0
8 TraesCS7A01G337900 chr7B 90.123 162 12 3 3035 3193 394149736 394149576 1.160000e-49 207.0
9 TraesCS7A01G337900 chr6B 82.805 663 64 33 59 693 497896983 497896343 6.020000e-152 547.0
10 TraesCS7A01G337900 chr6B 90.000 160 13 3 3035 3193 643439604 643439447 1.500000e-48 204.0
11 TraesCS7A01G337900 chr1A 81.481 729 78 27 1 694 146636925 146637631 2.170000e-151 545.0
12 TraesCS7A01G337900 chr1A 91.720 157 9 3 3040 3193 250067361 250067516 6.940000e-52 215.0
13 TraesCS7A01G337900 chr1A 86.979 192 13 7 504 690 372242284 372242100 4.180000e-49 206.0
14 TraesCS7A01G337900 chr1A 86.387 191 20 5 1 190 372242511 372242326 1.500000e-48 204.0
15 TraesCS7A01G337900 chr5D 80.807 719 56 29 1 693 7723482 7722820 3.700000e-134 488.0
16 TraesCS7A01G337900 chr5B 81.481 594 63 28 124 694 711904763 711904194 8.130000e-121 444.0
17 TraesCS7A01G337900 chr5B 86.574 216 24 5 45 258 711904943 711904731 1.920000e-57 233.0
18 TraesCS7A01G337900 chr5B 85.088 114 14 3 77 190 592211029 592211139 2.600000e-21 113.0
19 TraesCS7A01G337900 chr2A 79.321 677 72 34 8 675 626003504 626004121 2.290000e-111 412.0
20 TraesCS7A01G337900 chr2A 90.123 162 12 3 3035 3193 745403157 745402997 1.160000e-49 207.0
21 TraesCS7A01G337900 chr2A 89.634 164 12 4 3033 3193 403801830 403801991 1.500000e-48 204.0
22 TraesCS7A01G337900 chr1D 78.521 703 95 31 1 671 3186398 3187076 8.250000e-111 411.0
23 TraesCS7A01G337900 chr1D 90.123 162 12 3 3035 3193 436215748 436215908 1.160000e-49 207.0
24 TraesCS7A01G337900 chr6A 90.184 163 10 5 3035 3193 135268924 135269084 1.160000e-49 207.0
25 TraesCS7A01G337900 chr6A 90.566 159 11 3 3035 3190 186472427 186472584 1.160000e-49 207.0
26 TraesCS7A01G337900 chr4D 90.506 158 13 2 3038 3194 502537405 502537249 1.160000e-49 207.0
27 TraesCS7A01G337900 chr6D 92.086 139 10 1 556 694 336536638 336536775 9.040000e-46 195.0
28 TraesCS7A01G337900 chr3B 85.401 137 14 5 9 143 653629239 653629371 1.550000e-28 137.0
29 TraesCS7A01G337900 chr5A 78.365 208 35 10 126 330 430239910 430239710 3.340000e-25 126.0
30 TraesCS7A01G337900 chr5A 82.734 139 14 5 9 145 602306892 602306762 7.240000e-22 115.0
31 TraesCS7A01G337900 chr2B 95.455 44 2 0 653 696 643178891 643178848 1.590000e-08 71.3
32 TraesCS7A01G337900 chr2B 90.000 50 5 0 644 693 746354069 746354020 7.400000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G337900 chr7A 494129562 494132755 3193 False 5899.0 5899 100.0000 1 3194 1 chr7A.!!$F2 3193
1 TraesCS7A01G337900 chr7D 443171054 443173412 2358 False 3554.0 3554 94.0160 695 3036 1 chr7D.!!$F1 2341
2 TraesCS7A01G337900 chr7B 460602395 460604730 2335 False 3467.0 3467 93.5360 697 3033 1 chr7B.!!$F1 2336
3 TraesCS7A01G337900 chr7B 538575173 538575786 613 True 520.0 520 82.7040 59 666 1 chr7B.!!$R2 607
4 TraesCS7A01G337900 chr6B 497896343 497896983 640 True 547.0 547 82.8050 59 693 1 chr6B.!!$R1 634
5 TraesCS7A01G337900 chr1A 146636925 146637631 706 False 545.0 545 81.4810 1 694 1 chr1A.!!$F1 693
6 TraesCS7A01G337900 chr5D 7722820 7723482 662 True 488.0 488 80.8070 1 693 1 chr5D.!!$R1 692
7 TraesCS7A01G337900 chr5B 711904194 711904943 749 True 338.5 444 84.0275 45 694 2 chr5B.!!$R1 649
8 TraesCS7A01G337900 chr2A 626003504 626004121 617 False 412.0 412 79.3210 8 675 1 chr2A.!!$F2 667
9 TraesCS7A01G337900 chr1D 3186398 3187076 678 False 411.0 411 78.5210 1 671 1 chr1D.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 967 0.100503 GCGCCAAATAGGAATTGCGT 59.899 50.0 0.00 0.0 41.22 5.24 F
700 973 0.107410 AATAGGAATTGCGTCGGCCA 60.107 50.0 2.24 0.0 38.85 5.36 F
1549 1862 0.244178 GTCTCTGTCCCAACGTCCTC 59.756 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1862 0.034059 AATATCTTGCGCTCCGGGAG 59.966 55.000 19.95 19.95 0.0 4.30 R
1919 2232 1.067354 CAGTTTTCTCATTGCCAGGCC 60.067 52.381 9.64 0.00 0.0 5.19 R
3061 3404 0.035056 AGTTGGCAATCTTAGCGGCT 60.035 50.000 7.98 7.98 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 434 6.405278 AGAAAAAGTTCACCGGATTTGAAT 57.595 33.333 9.46 0.00 35.47 2.57
229 435 6.816136 AGAAAAAGTTCACCGGATTTGAATT 58.184 32.000 9.46 1.29 35.47 2.17
230 436 7.272244 AGAAAAAGTTCACCGGATTTGAATTT 58.728 30.769 9.46 8.39 35.19 1.82
232 438 7.857734 AAAAGTTCACCGGATTTGAATTTTT 57.142 28.000 22.74 22.74 42.95 1.94
343 593 5.685954 GGAATTCGAAAAAGAGTTCACCAAC 59.314 40.000 0.00 0.00 38.23 3.77
397 648 5.755861 TCCGGCGAATTTGAAATTTTCTTTT 59.244 32.000 9.30 2.05 0.00 2.27
485 738 5.161358 GCGAACAGAAAGGAATAAAAAGGG 58.839 41.667 0.00 0.00 0.00 3.95
498 751 7.734865 AGGAATAAAAAGGGTGGAAAGAAGAAT 59.265 33.333 0.00 0.00 0.00 2.40
499 752 8.035394 GGAATAAAAAGGGTGGAAAGAAGAATC 58.965 37.037 0.00 0.00 0.00 2.52
500 753 8.727100 AATAAAAAGGGTGGAAAGAAGAATCT 57.273 30.769 0.00 0.00 37.57 2.40
501 754 6.656632 AAAAAGGGTGGAAAGAAGAATCTC 57.343 37.500 0.00 0.00 33.77 2.75
502 755 3.618690 AGGGTGGAAAGAAGAATCTCG 57.381 47.619 0.00 0.00 33.77 4.04
533 803 6.147328 AGTGGTTACTTCGATTTGCTTTCTAC 59.853 38.462 0.00 0.00 31.66 2.59
553 823 6.017192 TCTACTATGGAGTGGTCTTGAGTTT 58.983 40.000 0.00 0.00 36.28 2.66
554 824 5.568620 ACTATGGAGTGGTCTTGAGTTTT 57.431 39.130 0.00 0.00 33.41 2.43
561 831 5.180304 GGAGTGGTCTTGAGTTTTGAATCTC 59.820 44.000 0.00 0.00 0.00 2.75
572 842 2.202623 GAATCTCGGTCGCGCTGT 60.203 61.111 5.56 0.00 0.00 4.40
575 846 1.352156 AATCTCGGTCGCGCTGTTTC 61.352 55.000 5.56 0.00 0.00 2.78
576 847 2.486636 ATCTCGGTCGCGCTGTTTCA 62.487 55.000 5.56 0.00 0.00 2.69
579 851 1.225745 CGGTCGCGCTGTTTCATTC 60.226 57.895 5.56 0.00 0.00 2.67
581 853 1.225745 GTCGCGCTGTTTCATTCGG 60.226 57.895 5.56 0.00 0.00 4.30
694 967 0.100503 GCGCCAAATAGGAATTGCGT 59.899 50.000 0.00 0.00 41.22 5.24
695 968 1.859998 GCGCCAAATAGGAATTGCGTC 60.860 52.381 0.00 0.00 41.22 5.19
696 969 1.594518 CGCCAAATAGGAATTGCGTCG 60.595 52.381 0.00 0.00 41.22 5.12
697 970 1.268539 GCCAAATAGGAATTGCGTCGG 60.269 52.381 0.00 0.00 41.22 4.79
698 971 1.268539 CCAAATAGGAATTGCGTCGGC 60.269 52.381 0.00 0.00 41.22 5.54
699 972 1.021968 AAATAGGAATTGCGTCGGCC 58.978 50.000 0.00 0.00 38.85 6.13
700 973 0.107410 AATAGGAATTGCGTCGGCCA 60.107 50.000 2.24 0.00 38.85 5.36
752 1029 1.821759 CACACGGTCAAAGGCCACA 60.822 57.895 5.01 0.00 0.00 4.17
753 1030 1.077357 ACACGGTCAAAGGCCACAA 60.077 52.632 5.01 0.00 0.00 3.33
754 1031 1.101049 ACACGGTCAAAGGCCACAAG 61.101 55.000 5.01 0.00 0.00 3.16
755 1032 2.193536 ACGGTCAAAGGCCACAAGC 61.194 57.895 5.01 0.00 42.60 4.01
807 1116 4.888325 CCCATCTCCGCCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
816 1125 2.446802 GCCCCTCCTCTACCCCTG 60.447 72.222 0.00 0.00 0.00 4.45
852 1161 2.409870 CCCTTCATCAACGCCTGCC 61.410 63.158 0.00 0.00 0.00 4.85
875 1184 1.918293 TCCCGGCACCAAGATCTGT 60.918 57.895 0.00 0.00 0.00 3.41
929 1239 2.091610 TCCACCAATCCACAAAAGGTCA 60.092 45.455 0.00 0.00 0.00 4.02
982 1292 2.908015 GCATACCGAGGGGAAGCA 59.092 61.111 0.00 0.00 36.97 3.91
985 1295 0.830648 CATACCGAGGGGAAGCAGAA 59.169 55.000 0.00 0.00 36.97 3.02
998 1308 3.066481 GGAAGCAGAATCAGATCTTTGGC 59.934 47.826 0.00 0.00 0.00 4.52
1179 1492 0.252467 AGGAGTGGGAACAGGAGGAG 60.252 60.000 0.00 0.00 44.46 3.69
1180 1493 1.268283 GGAGTGGGAACAGGAGGAGG 61.268 65.000 0.00 0.00 44.46 4.30
1181 1494 0.252284 GAGTGGGAACAGGAGGAGGA 60.252 60.000 0.00 0.00 44.46 3.71
1182 1495 0.252467 AGTGGGAACAGGAGGAGGAG 60.252 60.000 0.00 0.00 44.46 3.69
1462 1775 0.725686 CAAGCGCAAGATCTCCACTG 59.274 55.000 11.47 0.00 43.02 3.66
1549 1862 0.244178 GTCTCTGTCCCAACGTCCTC 59.756 60.000 0.00 0.00 0.00 3.71
1554 1867 2.678934 TCCCAACGTCCTCTCCCG 60.679 66.667 0.00 0.00 0.00 5.14
1680 1993 0.681175 AAATGCTTGGACAAGGTGCC 59.319 50.000 13.41 0.00 38.80 5.01
1707 2020 0.964358 AGGGCAGCTCAAATGTGCTC 60.964 55.000 6.98 0.00 42.25 4.26
1770 2083 2.793160 ATCAGCCTGCGAGTGGTGTG 62.793 60.000 0.00 0.00 0.00 3.82
1824 2137 2.055689 CTCAGGTTGGCCAGGTGACA 62.056 60.000 5.11 0.00 37.19 3.58
1899 2212 2.338785 GCAGGAGCAAGGGCAAGTC 61.339 63.158 0.00 0.00 44.61 3.01
1977 2290 0.689745 CGGGTGATAGGACCAAGGGA 60.690 60.000 0.00 0.00 37.80 4.20
2041 2354 1.518056 GCGGTATCATGCCACCATGG 61.518 60.000 11.19 11.19 47.00 3.66
2378 2703 0.393808 TCCTAGGATGGCGTTTTGGC 60.394 55.000 7.62 0.00 45.12 4.52
2495 2823 1.661112 GCTAGGAGCGACAAATGACAC 59.339 52.381 0.00 0.00 0.00 3.67
2498 2826 1.620819 AGGAGCGACAAATGACACTCT 59.379 47.619 0.00 0.00 0.00 3.24
2567 2895 4.202101 TGCATTTTGGAAACGTGAATCTGT 60.202 37.500 0.00 0.00 0.00 3.41
2568 2896 4.744631 GCATTTTGGAAACGTGAATCTGTT 59.255 37.500 0.00 0.00 0.00 3.16
2642 2979 4.339814 ACTCCAGCATTTTCGGTGTAAAAA 59.660 37.500 0.00 0.00 32.42 1.94
2699 3038 9.529325 CTGTTTATACGGAGTTGATCTATTTGA 57.471 33.333 0.00 0.00 37.78 2.69
2782 3121 7.733402 ATGATGTGAATTTTTGGGAAAGTTG 57.267 32.000 0.00 0.00 0.00 3.16
2808 3148 6.919721 ACGTTTGTATGCTTGACCAAATTAT 58.080 32.000 0.00 0.00 0.00 1.28
2938 3281 8.751302 TTTTTCTTAGAAACTTGGTCAAACAC 57.249 30.769 6.93 0.00 0.00 3.32
2942 3285 2.687935 AGAAACTTGGTCAAACACGCAT 59.312 40.909 0.00 0.00 0.00 4.73
2943 3286 2.490328 AACTTGGTCAAACACGCATG 57.510 45.000 0.00 0.00 0.00 4.06
3051 3394 3.791586 GGCCTCTCCCAGTGCTCC 61.792 72.222 0.00 0.00 0.00 4.70
3052 3395 3.005539 GCCTCTCCCAGTGCTCCA 61.006 66.667 0.00 0.00 0.00 3.86
3053 3396 2.985456 CCTCTCCCAGTGCTCCAC 59.015 66.667 0.00 0.00 34.10 4.02
3054 3397 2.664081 CCTCTCCCAGTGCTCCACC 61.664 68.421 0.00 0.00 34.49 4.61
3055 3398 1.611851 CTCTCCCAGTGCTCCACCT 60.612 63.158 0.00 0.00 34.49 4.00
3056 3399 1.152030 TCTCCCAGTGCTCCACCTT 60.152 57.895 0.00 0.00 34.49 3.50
3057 3400 1.002868 CTCCCAGTGCTCCACCTTG 60.003 63.158 0.00 0.00 34.49 3.61
3058 3401 1.770110 TCCCAGTGCTCCACCTTGT 60.770 57.895 0.00 0.00 34.49 3.16
3059 3402 0.472925 TCCCAGTGCTCCACCTTGTA 60.473 55.000 0.00 0.00 34.49 2.41
3060 3403 0.321653 CCCAGTGCTCCACCTTGTAC 60.322 60.000 0.00 0.00 34.49 2.90
3061 3404 0.396435 CCAGTGCTCCACCTTGTACA 59.604 55.000 0.00 0.00 34.49 2.90
3062 3405 1.609061 CCAGTGCTCCACCTTGTACAG 60.609 57.143 0.00 0.00 34.49 2.74
3063 3406 0.035458 AGTGCTCCACCTTGTACAGC 59.965 55.000 0.00 0.00 34.49 4.40
3064 3407 0.955919 GTGCTCCACCTTGTACAGCC 60.956 60.000 0.00 0.00 0.00 4.85
3065 3408 1.741770 GCTCCACCTTGTACAGCCG 60.742 63.158 0.00 0.00 0.00 5.52
3066 3409 1.741770 CTCCACCTTGTACAGCCGC 60.742 63.158 0.00 0.00 0.00 6.53
3067 3410 2.172483 CTCCACCTTGTACAGCCGCT 62.172 60.000 0.00 0.00 0.00 5.52
3068 3411 0.901114 TCCACCTTGTACAGCCGCTA 60.901 55.000 0.00 0.00 0.00 4.26
3069 3412 0.036765 CCACCTTGTACAGCCGCTAA 60.037 55.000 0.00 0.00 0.00 3.09
3070 3413 1.359848 CACCTTGTACAGCCGCTAAG 58.640 55.000 0.00 0.00 0.00 2.18
3071 3414 1.067142 CACCTTGTACAGCCGCTAAGA 60.067 52.381 0.00 0.00 0.00 2.10
3072 3415 1.831736 ACCTTGTACAGCCGCTAAGAT 59.168 47.619 0.00 0.00 0.00 2.40
3073 3416 2.236395 ACCTTGTACAGCCGCTAAGATT 59.764 45.455 0.00 0.00 0.00 2.40
3074 3417 2.609459 CCTTGTACAGCCGCTAAGATTG 59.391 50.000 0.00 0.00 0.00 2.67
3075 3418 1.651987 TGTACAGCCGCTAAGATTGC 58.348 50.000 0.00 0.00 0.00 3.56
3076 3419 0.938008 GTACAGCCGCTAAGATTGCC 59.062 55.000 0.00 0.00 0.00 4.52
3077 3420 0.539518 TACAGCCGCTAAGATTGCCA 59.460 50.000 0.00 0.00 0.00 4.92
3078 3421 0.322456 ACAGCCGCTAAGATTGCCAA 60.322 50.000 0.00 0.00 0.00 4.52
3079 3422 0.099436 CAGCCGCTAAGATTGCCAAC 59.901 55.000 0.00 0.00 0.00 3.77
3080 3423 0.035056 AGCCGCTAAGATTGCCAACT 60.035 50.000 0.00 0.00 0.00 3.16
3081 3424 1.209504 AGCCGCTAAGATTGCCAACTA 59.790 47.619 0.00 0.00 0.00 2.24
3082 3425 2.014128 GCCGCTAAGATTGCCAACTAA 58.986 47.619 0.00 0.00 0.00 2.24
3083 3426 2.032178 GCCGCTAAGATTGCCAACTAAG 59.968 50.000 0.00 0.00 0.00 2.18
3084 3427 2.032178 CCGCTAAGATTGCCAACTAAGC 59.968 50.000 0.00 0.00 0.00 3.09
3085 3428 2.677836 CGCTAAGATTGCCAACTAAGCA 59.322 45.455 0.00 0.00 38.81 3.91
3109 3452 6.720112 AAAAATATGATGTGGCATGCTAGT 57.280 33.333 18.92 2.76 0.00 2.57
3110 3453 6.720112 AAAATATGATGTGGCATGCTAGTT 57.280 33.333 18.92 0.92 0.00 2.24
3111 3454 7.822161 AAAATATGATGTGGCATGCTAGTTA 57.178 32.000 18.92 1.05 0.00 2.24
3112 3455 7.822161 AAATATGATGTGGCATGCTAGTTAA 57.178 32.000 18.92 0.16 0.00 2.01
3113 3456 7.444629 AATATGATGTGGCATGCTAGTTAAG 57.555 36.000 18.92 0.00 0.00 1.85
3114 3457 4.486125 TGATGTGGCATGCTAGTTAAGA 57.514 40.909 18.92 0.00 0.00 2.10
3115 3458 4.842574 TGATGTGGCATGCTAGTTAAGAA 58.157 39.130 18.92 0.00 0.00 2.52
3116 3459 4.877823 TGATGTGGCATGCTAGTTAAGAAG 59.122 41.667 18.92 0.00 0.00 2.85
3117 3460 4.551702 TGTGGCATGCTAGTTAAGAAGA 57.448 40.909 18.92 0.00 0.00 2.87
3118 3461 4.507710 TGTGGCATGCTAGTTAAGAAGAG 58.492 43.478 18.92 0.00 0.00 2.85
3119 3462 4.222810 TGTGGCATGCTAGTTAAGAAGAGA 59.777 41.667 18.92 0.00 0.00 3.10
3120 3463 4.808364 GTGGCATGCTAGTTAAGAAGAGAG 59.192 45.833 18.92 0.00 0.00 3.20
3121 3464 4.711846 TGGCATGCTAGTTAAGAAGAGAGA 59.288 41.667 18.92 0.00 0.00 3.10
3122 3465 5.163468 TGGCATGCTAGTTAAGAAGAGAGAG 60.163 44.000 18.92 0.00 0.00 3.20
3123 3466 5.163457 GGCATGCTAGTTAAGAAGAGAGAGT 60.163 44.000 18.92 0.00 0.00 3.24
3124 3467 6.039941 GGCATGCTAGTTAAGAAGAGAGAGTA 59.960 42.308 18.92 0.00 0.00 2.59
3125 3468 7.138736 GCATGCTAGTTAAGAAGAGAGAGTAG 58.861 42.308 11.37 0.00 0.00 2.57
3126 3469 7.012894 GCATGCTAGTTAAGAAGAGAGAGTAGA 59.987 40.741 11.37 0.00 0.00 2.59
3127 3470 8.898761 CATGCTAGTTAAGAAGAGAGAGTAGAA 58.101 37.037 0.00 0.00 0.00 2.10
3128 3471 9.640952 ATGCTAGTTAAGAAGAGAGAGTAGAAT 57.359 33.333 0.00 0.00 0.00 2.40
3129 3472 8.898761 TGCTAGTTAAGAAGAGAGAGTAGAATG 58.101 37.037 0.00 0.00 0.00 2.67
3130 3473 8.349983 GCTAGTTAAGAAGAGAGAGTAGAATGG 58.650 40.741 0.00 0.00 0.00 3.16
3131 3474 9.403583 CTAGTTAAGAAGAGAGAGTAGAATGGT 57.596 37.037 0.00 0.00 0.00 3.55
3132 3475 8.062065 AGTTAAGAAGAGAGAGTAGAATGGTG 57.938 38.462 0.00 0.00 0.00 4.17
3133 3476 7.891183 AGTTAAGAAGAGAGAGTAGAATGGTGA 59.109 37.037 0.00 0.00 0.00 4.02
3134 3477 6.524101 AAGAAGAGAGAGTAGAATGGTGAC 57.476 41.667 0.00 0.00 0.00 3.67
3135 3478 5.826643 AGAAGAGAGAGTAGAATGGTGACT 58.173 41.667 0.00 0.00 0.00 3.41
3136 3479 5.885912 AGAAGAGAGAGTAGAATGGTGACTC 59.114 44.000 0.00 0.00 39.96 3.36
3137 3480 4.532834 AGAGAGAGTAGAATGGTGACTCC 58.467 47.826 0.00 0.00 40.44 3.85
3138 3481 3.283751 AGAGAGTAGAATGGTGACTCCG 58.716 50.000 0.00 0.00 40.44 4.63
3139 3482 2.359531 GAGAGTAGAATGGTGACTCCGG 59.640 54.545 0.00 0.00 40.44 5.14
3140 3483 2.025226 AGAGTAGAATGGTGACTCCGGA 60.025 50.000 2.93 2.93 40.44 5.14
3141 3484 2.359531 GAGTAGAATGGTGACTCCGGAG 59.640 54.545 30.11 30.11 39.52 4.63
3142 3485 2.025226 AGTAGAATGGTGACTCCGGAGA 60.025 50.000 37.69 15.75 39.52 3.71
3143 3486 1.938585 AGAATGGTGACTCCGGAGAA 58.061 50.000 37.69 21.82 39.52 2.87
3144 3487 2.257207 AGAATGGTGACTCCGGAGAAA 58.743 47.619 37.69 21.44 39.52 2.52
3145 3488 2.637872 AGAATGGTGACTCCGGAGAAAA 59.362 45.455 37.69 18.86 39.52 2.29
3146 3489 3.072476 AGAATGGTGACTCCGGAGAAAAA 59.928 43.478 37.69 18.23 39.52 1.94
3147 3490 2.249844 TGGTGACTCCGGAGAAAAAC 57.750 50.000 37.69 25.22 39.52 2.43
3148 3491 1.145803 GGTGACTCCGGAGAAAAACG 58.854 55.000 37.69 11.03 0.00 3.60
3153 3496 4.058797 CCGGAGAAAAACGGTGCT 57.941 55.556 0.00 0.00 44.85 4.40
3154 3497 3.220447 CCGGAGAAAAACGGTGCTA 57.780 52.632 0.00 0.00 44.85 3.49
3155 3498 1.515081 CCGGAGAAAAACGGTGCTAA 58.485 50.000 0.00 0.00 44.85 3.09
3156 3499 1.463444 CCGGAGAAAAACGGTGCTAAG 59.537 52.381 0.00 0.00 44.85 2.18
3157 3500 1.463444 CGGAGAAAAACGGTGCTAAGG 59.537 52.381 0.00 0.00 0.00 2.69
3158 3501 2.774687 GGAGAAAAACGGTGCTAAGGA 58.225 47.619 0.00 0.00 0.00 3.36
3159 3502 2.483106 GGAGAAAAACGGTGCTAAGGAC 59.517 50.000 0.00 0.00 0.00 3.85
3160 3503 2.140717 AGAAAAACGGTGCTAAGGACG 58.859 47.619 0.00 0.00 0.00 4.79
3161 3504 1.869132 GAAAAACGGTGCTAAGGACGT 59.131 47.619 0.00 0.00 41.88 4.34
3162 3505 1.223187 AAAACGGTGCTAAGGACGTG 58.777 50.000 0.00 0.00 39.76 4.49
3163 3506 0.105408 AAACGGTGCTAAGGACGTGT 59.895 50.000 0.00 0.00 39.76 4.49
3164 3507 0.961019 AACGGTGCTAAGGACGTGTA 59.039 50.000 0.00 0.00 39.76 2.90
3165 3508 0.242017 ACGGTGCTAAGGACGTGTAC 59.758 55.000 0.00 0.00 38.24 2.90
3166 3509 0.457337 CGGTGCTAAGGACGTGTACC 60.457 60.000 0.00 0.00 33.99 3.34
3167 3510 0.893447 GGTGCTAAGGACGTGTACCT 59.107 55.000 0.00 0.00 39.69 3.08
3168 3511 2.094675 GGTGCTAAGGACGTGTACCTA 58.905 52.381 0.00 0.00 36.67 3.08
3169 3512 2.098770 GGTGCTAAGGACGTGTACCTAG 59.901 54.545 0.00 0.00 36.67 3.02
3170 3513 2.098770 GTGCTAAGGACGTGTACCTAGG 59.901 54.545 7.41 7.41 36.67 3.02
3171 3514 2.291153 TGCTAAGGACGTGTACCTAGGT 60.291 50.000 20.57 20.57 36.67 3.08
3172 3515 2.098770 GCTAAGGACGTGTACCTAGGTG 59.901 54.545 25.33 10.11 36.67 4.00
3173 3516 1.553706 AAGGACGTGTACCTAGGTGG 58.446 55.000 25.33 12.86 42.93 4.61
3174 3517 0.700564 AGGACGTGTACCTAGGTGGA 59.299 55.000 25.33 7.67 39.71 4.02
3175 3518 1.076024 AGGACGTGTACCTAGGTGGAA 59.924 52.381 25.33 6.80 39.71 3.53
3176 3519 1.475682 GGACGTGTACCTAGGTGGAAG 59.524 57.143 25.33 14.41 39.71 3.46
3177 3520 0.893447 ACGTGTACCTAGGTGGAAGC 59.107 55.000 25.33 9.57 39.71 3.86
3178 3521 0.892755 CGTGTACCTAGGTGGAAGCA 59.107 55.000 25.33 11.93 39.71 3.91
3179 3522 1.403780 CGTGTACCTAGGTGGAAGCAC 60.404 57.143 25.33 20.40 39.71 4.40
3180 3523 1.621814 GTGTACCTAGGTGGAAGCACA 59.378 52.381 25.33 16.24 39.71 4.57
3181 3524 2.038033 GTGTACCTAGGTGGAAGCACAA 59.962 50.000 25.33 0.00 39.71 3.33
3182 3525 2.910319 TGTACCTAGGTGGAAGCACAAT 59.090 45.455 25.33 0.00 39.71 2.71
3183 3526 3.329520 TGTACCTAGGTGGAAGCACAATT 59.670 43.478 25.33 0.00 39.71 2.32
3184 3527 3.073274 ACCTAGGTGGAAGCACAATTC 57.927 47.619 15.42 0.00 39.71 2.17
3185 3528 2.644798 ACCTAGGTGGAAGCACAATTCT 59.355 45.455 15.42 0.00 39.71 2.40
3186 3529 3.012518 CCTAGGTGGAAGCACAATTCTG 58.987 50.000 0.00 0.00 38.35 3.02
3187 3530 2.957402 AGGTGGAAGCACAATTCTGA 57.043 45.000 0.00 0.00 36.26 3.27
3188 3531 2.787994 AGGTGGAAGCACAATTCTGAG 58.212 47.619 0.00 0.00 36.26 3.35
3189 3532 2.107204 AGGTGGAAGCACAATTCTGAGT 59.893 45.455 0.00 0.00 36.26 3.41
3190 3533 2.485814 GGTGGAAGCACAATTCTGAGTC 59.514 50.000 0.00 0.00 0.00 3.36
3191 3534 3.406764 GTGGAAGCACAATTCTGAGTCT 58.593 45.455 0.00 0.00 0.00 3.24
3192 3535 4.563580 GGTGGAAGCACAATTCTGAGTCTA 60.564 45.833 0.00 0.00 0.00 2.59
3193 3536 5.181748 GTGGAAGCACAATTCTGAGTCTAT 58.818 41.667 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.323203 AGATGAATAAAATAGCGCTGCAAT 57.677 33.333 22.90 1.85 0.00 3.56
83 84 9.786105 CCTTTTTGCAAAATTGATGTAAACTTT 57.214 25.926 24.39 0.00 33.15 2.66
84 85 8.955388 ACCTTTTTGCAAAATTGATGTAAACTT 58.045 25.926 24.39 0.00 33.15 2.66
85 86 8.504812 ACCTTTTTGCAAAATTGATGTAAACT 57.495 26.923 24.39 0.00 33.15 2.66
90 108 6.998968 TGAACCTTTTTGCAAAATTGATGT 57.001 29.167 24.39 13.98 0.00 3.06
95 113 9.518906 GAAATTGATGAACCTTTTTGCAAAATT 57.481 25.926 24.39 16.04 0.00 1.82
195 278 5.616204 CGGTGAACTTTTTCTAAATCCGGTC 60.616 44.000 0.00 0.00 32.36 4.79
205 288 5.845391 TTCAAATCCGGTGAACTTTTTCT 57.155 34.783 0.00 0.00 32.36 2.52
206 289 7.477144 AAATTCAAATCCGGTGAACTTTTTC 57.523 32.000 8.04 0.00 37.80 2.29
312 562 4.573201 ACTCTTTTTCGAATTCCGTGAACA 59.427 37.500 0.00 0.00 39.75 3.18
319 569 5.432885 TGGTGAACTCTTTTTCGAATTCC 57.567 39.130 0.00 0.00 0.00 3.01
438 691 6.042777 CGAAGCTTTCCCTTTTTCTTTTCTT 58.957 36.000 0.00 0.00 0.00 2.52
439 692 5.592054 CGAAGCTTTCCCTTTTTCTTTTCT 58.408 37.500 0.00 0.00 0.00 2.52
440 693 5.890110 CGAAGCTTTCCCTTTTTCTTTTC 57.110 39.130 0.00 0.00 0.00 2.29
485 738 2.924290 CGACCGAGATTCTTCTTTCCAC 59.076 50.000 0.00 0.00 30.30 4.02
498 751 2.479566 AGTAACCACTACGACCGAGA 57.520 50.000 0.00 0.00 35.48 4.04
499 752 2.475187 CGAAGTAACCACTACGACCGAG 60.475 54.545 0.00 0.00 35.48 4.63
500 753 1.464608 CGAAGTAACCACTACGACCGA 59.535 52.381 0.00 0.00 35.48 4.69
501 754 1.464608 TCGAAGTAACCACTACGACCG 59.535 52.381 0.00 0.00 35.48 4.79
502 755 3.772060 ATCGAAGTAACCACTACGACC 57.228 47.619 0.00 0.00 35.48 4.79
533 803 5.551233 TCAAAACTCAAGACCACTCCATAG 58.449 41.667 0.00 0.00 0.00 2.23
553 823 1.805539 CAGCGCGACCGAGATTCAA 60.806 57.895 12.10 0.00 36.29 2.69
554 824 2.202610 CAGCGCGACCGAGATTCA 60.203 61.111 12.10 0.00 36.29 2.57
561 831 1.225745 GAATGAAACAGCGCGACCG 60.226 57.895 12.10 0.00 37.57 4.79
572 842 3.780804 TCTGGAAAGGACCGAATGAAA 57.219 42.857 0.00 0.00 0.00 2.69
575 846 4.425577 CTTTTCTGGAAAGGACCGAATG 57.574 45.455 0.17 0.00 40.87 2.67
695 968 3.895820 TTTGGGTGGGGATTGGCCG 62.896 63.158 0.00 0.00 37.63 6.13
696 969 1.306911 ATTTGGGTGGGGATTGGCC 60.307 57.895 0.00 0.00 0.00 5.36
697 970 1.337384 GGATTTGGGTGGGGATTGGC 61.337 60.000 0.00 0.00 0.00 4.52
698 971 0.690744 GGGATTTGGGTGGGGATTGG 60.691 60.000 0.00 0.00 0.00 3.16
699 972 0.690744 GGGGATTTGGGTGGGGATTG 60.691 60.000 0.00 0.00 0.00 2.67
700 973 0.859978 AGGGGATTTGGGTGGGGATT 60.860 55.000 0.00 0.00 0.00 3.01
752 1029 1.282157 CTAGGGTTAGCTTGTGGGCTT 59.718 52.381 0.00 0.00 42.97 4.35
753 1030 0.912486 CTAGGGTTAGCTTGTGGGCT 59.088 55.000 0.00 0.00 45.29 5.19
754 1031 3.478540 CTAGGGTTAGCTTGTGGGC 57.521 57.895 0.00 0.00 0.00 5.36
763 1040 3.845259 TGCGGCGGCTAGGGTTAG 61.845 66.667 17.76 0.00 40.82 2.34
764 1041 4.151582 GTGCGGCGGCTAGGGTTA 62.152 66.667 17.76 0.00 40.82 2.85
798 1083 4.159108 AGGGGTAGAGGAGGGGCG 62.159 72.222 0.00 0.00 0.00 6.13
803 1112 0.909610 TTGGTGCAGGGGTAGAGGAG 60.910 60.000 0.00 0.00 0.00 3.69
807 1116 3.065306 CGTTGGTGCAGGGGTAGA 58.935 61.111 0.00 0.00 0.00 2.59
838 1147 4.776322 CCGGGCAGGCGTTGATGA 62.776 66.667 0.00 0.00 0.00 2.92
891 1200 4.489771 AGGCGGCTCGGGGATTTG 62.490 66.667 5.25 0.00 0.00 2.32
907 1217 2.558359 GACCTTTTGTGGATTGGTGGAG 59.442 50.000 0.00 0.00 0.00 3.86
929 1239 2.883828 CGGACTCAGGTTGTGGGCT 61.884 63.158 0.00 0.00 0.00 5.19
982 1292 3.474600 CCATCGCCAAAGATCTGATTCT 58.525 45.455 0.00 0.00 0.00 2.40
985 1295 1.492176 ACCCATCGCCAAAGATCTGAT 59.508 47.619 0.00 0.00 0.00 2.90
1050 1360 2.366570 GCCTCCTCCTCCTCCACT 59.633 66.667 0.00 0.00 0.00 4.00
1179 1492 1.120795 CCTCATCAGCCTCCTCCTCC 61.121 65.000 0.00 0.00 0.00 4.30
1180 1493 1.757423 GCCTCATCAGCCTCCTCCTC 61.757 65.000 0.00 0.00 0.00 3.71
1181 1494 1.765657 GCCTCATCAGCCTCCTCCT 60.766 63.158 0.00 0.00 0.00 3.69
1182 1495 2.828145 GCCTCATCAGCCTCCTCC 59.172 66.667 0.00 0.00 0.00 4.30
1303 1616 2.928116 GCCATTTGACGAGGTACTGTAC 59.072 50.000 9.46 9.46 41.55 2.90
1344 1657 1.003580 TCTTCAGGCTCCCATGTGTTC 59.996 52.381 0.00 0.00 0.00 3.18
1462 1775 1.833787 TTGGGACTTACCACCGGAGC 61.834 60.000 9.46 0.00 41.03 4.70
1549 1862 0.034059 AATATCTTGCGCTCCGGGAG 59.966 55.000 19.95 19.95 0.00 4.30
1680 1993 2.046507 GAGCTGCCCTCCTGTGTG 60.047 66.667 0.00 0.00 34.35 3.82
1770 2083 6.369065 CCTGTACTGAACTATCAACCTTTGAC 59.631 42.308 0.60 0.00 43.48 3.18
1824 2137 2.203337 TTGCGCTTCTTGGCACCT 60.203 55.556 9.73 0.00 39.20 4.00
1899 2212 1.462283 CTCTCACTTGTGCCATTGACG 59.538 52.381 0.00 0.00 0.00 4.35
1919 2232 1.067354 CAGTTTTCTCATTGCCAGGCC 60.067 52.381 9.64 0.00 0.00 5.19
2041 2354 2.747822 CCTGCTGCACGTCATCTGC 61.748 63.158 0.00 0.00 35.03 4.26
2403 2728 6.432802 TTTTCTTTCGAATTTGATGTTCGC 57.567 33.333 0.00 0.00 45.83 4.70
2532 2860 8.494347 CGTTTCCAAAATGCAATTATTCAAAGA 58.506 29.630 0.00 0.00 33.67 2.52
2543 2871 4.744137 CAGATTCACGTTTCCAAAATGCAA 59.256 37.500 0.00 0.00 0.00 4.08
2544 2872 4.202101 ACAGATTCACGTTTCCAAAATGCA 60.202 37.500 0.00 0.00 0.00 3.96
2575 2903 5.273674 TCATGACAATCAAGGAGCTCTAG 57.726 43.478 14.64 3.98 0.00 2.43
2577 2905 4.564782 TTCATGACAATCAAGGAGCTCT 57.435 40.909 14.64 0.00 0.00 4.09
2772 3111 4.498345 GCATACAAACGTTCAACTTTCCCA 60.498 41.667 0.00 0.00 0.00 4.37
2782 3121 3.889196 TGGTCAAGCATACAAACGTTC 57.111 42.857 0.00 0.00 0.00 3.95
2938 3281 5.288232 TCTTTTCAAAAGTCAAACACATGCG 59.712 36.000 9.74 0.00 0.00 4.73
2943 3286 9.636965 GCATTTATCTTTTCAAAAGTCAAACAC 57.363 29.630 9.74 4.36 0.00 3.32
2968 3311 6.538381 CCAACCATTCCAAAAATATAAGGTGC 59.462 38.462 0.00 0.00 0.00 5.01
2978 3321 5.600484 ACATGTACTCCAACCATTCCAAAAA 59.400 36.000 0.00 0.00 0.00 1.94
3036 3379 2.664081 GGTGGAGCACTGGGAGAGG 61.664 68.421 0.00 0.00 34.40 3.69
3037 3380 1.197430 AAGGTGGAGCACTGGGAGAG 61.197 60.000 0.00 0.00 34.40 3.20
3038 3381 1.152030 AAGGTGGAGCACTGGGAGA 60.152 57.895 0.00 0.00 34.40 3.71
3039 3382 1.002868 CAAGGTGGAGCACTGGGAG 60.003 63.158 0.00 0.00 34.40 4.30
3040 3383 0.472925 TACAAGGTGGAGCACTGGGA 60.473 55.000 0.00 0.00 34.40 4.37
3041 3384 0.321653 GTACAAGGTGGAGCACTGGG 60.322 60.000 0.00 0.00 34.40 4.45
3042 3385 0.396435 TGTACAAGGTGGAGCACTGG 59.604 55.000 0.00 0.00 34.40 4.00
3043 3386 1.800805 CTGTACAAGGTGGAGCACTG 58.199 55.000 0.00 0.00 34.40 3.66
3044 3387 0.035458 GCTGTACAAGGTGGAGCACT 59.965 55.000 0.00 0.00 34.40 4.40
3045 3388 0.955919 GGCTGTACAAGGTGGAGCAC 60.956 60.000 0.00 0.00 0.00 4.40
3046 3389 1.374947 GGCTGTACAAGGTGGAGCA 59.625 57.895 0.00 0.00 0.00 4.26
3047 3390 1.741770 CGGCTGTACAAGGTGGAGC 60.742 63.158 0.00 0.00 0.00 4.70
3048 3391 1.741770 GCGGCTGTACAAGGTGGAG 60.742 63.158 0.00 0.00 0.00 3.86
3049 3392 0.901114 TAGCGGCTGTACAAGGTGGA 60.901 55.000 13.86 0.00 0.00 4.02
3050 3393 0.036765 TTAGCGGCTGTACAAGGTGG 60.037 55.000 13.86 0.00 0.00 4.61
3051 3394 1.067142 TCTTAGCGGCTGTACAAGGTG 60.067 52.381 13.86 0.00 0.00 4.00
3052 3395 1.263356 TCTTAGCGGCTGTACAAGGT 58.737 50.000 13.86 0.00 0.00 3.50
3053 3396 2.604046 ATCTTAGCGGCTGTACAAGG 57.396 50.000 13.86 0.00 0.00 3.61
3054 3397 2.030946 GCAATCTTAGCGGCTGTACAAG 59.969 50.000 13.86 8.33 0.00 3.16
3055 3398 2.006888 GCAATCTTAGCGGCTGTACAA 58.993 47.619 13.86 0.00 0.00 2.41
3056 3399 1.651987 GCAATCTTAGCGGCTGTACA 58.348 50.000 13.86 0.00 0.00 2.90
3057 3400 0.938008 GGCAATCTTAGCGGCTGTAC 59.062 55.000 13.86 0.00 0.00 2.90
3058 3401 0.539518 TGGCAATCTTAGCGGCTGTA 59.460 50.000 13.86 0.00 0.00 2.74
3059 3402 0.322456 TTGGCAATCTTAGCGGCTGT 60.322 50.000 13.86 0.00 0.00 4.40
3060 3403 0.099436 GTTGGCAATCTTAGCGGCTG 59.901 55.000 13.86 0.00 0.00 4.85
3061 3404 0.035056 AGTTGGCAATCTTAGCGGCT 60.035 50.000 7.98 7.98 0.00 5.52
3062 3405 1.663695 TAGTTGGCAATCTTAGCGGC 58.336 50.000 1.92 0.00 0.00 6.53
3063 3406 2.032178 GCTTAGTTGGCAATCTTAGCGG 59.968 50.000 18.00 2.59 29.31 5.52
3064 3407 2.677836 TGCTTAGTTGGCAATCTTAGCG 59.322 45.455 22.89 6.46 38.59 4.26
3065 3408 4.701956 TTGCTTAGTTGGCAATCTTAGC 57.298 40.909 22.30 22.30 43.50 3.09
3086 3429 6.720112 ACTAGCATGCCACATCATATTTTT 57.280 33.333 15.66 0.00 0.00 1.94
3087 3430 6.720112 AACTAGCATGCCACATCATATTTT 57.280 33.333 15.66 0.00 0.00 1.82
3088 3431 7.720957 TCTTAACTAGCATGCCACATCATATTT 59.279 33.333 15.66 1.63 0.00 1.40
3089 3432 7.226441 TCTTAACTAGCATGCCACATCATATT 58.774 34.615 15.66 0.00 0.00 1.28
3090 3433 6.772605 TCTTAACTAGCATGCCACATCATAT 58.227 36.000 15.66 0.00 0.00 1.78
3091 3434 6.173427 TCTTAACTAGCATGCCACATCATA 57.827 37.500 15.66 0.00 0.00 2.15
3092 3435 5.039920 TCTTAACTAGCATGCCACATCAT 57.960 39.130 15.66 0.00 0.00 2.45
3093 3436 4.486125 TCTTAACTAGCATGCCACATCA 57.514 40.909 15.66 0.00 0.00 3.07
3094 3437 5.118990 TCTTCTTAACTAGCATGCCACATC 58.881 41.667 15.66 0.00 0.00 3.06
3095 3438 5.102953 TCTTCTTAACTAGCATGCCACAT 57.897 39.130 15.66 0.00 0.00 3.21
3096 3439 4.222810 TCTCTTCTTAACTAGCATGCCACA 59.777 41.667 15.66 0.00 0.00 4.17
3097 3440 4.759782 TCTCTTCTTAACTAGCATGCCAC 58.240 43.478 15.66 0.00 0.00 5.01
3098 3441 4.711846 TCTCTCTTCTTAACTAGCATGCCA 59.288 41.667 15.66 0.00 0.00 4.92
3099 3442 5.163457 ACTCTCTCTTCTTAACTAGCATGCC 60.163 44.000 15.66 0.00 0.00 4.40
3100 3443 5.901552 ACTCTCTCTTCTTAACTAGCATGC 58.098 41.667 10.51 10.51 0.00 4.06
3101 3444 8.445275 TCTACTCTCTCTTCTTAACTAGCATG 57.555 38.462 0.00 0.00 0.00 4.06
3102 3445 9.640952 ATTCTACTCTCTCTTCTTAACTAGCAT 57.359 33.333 0.00 0.00 0.00 3.79
3103 3446 8.898761 CATTCTACTCTCTCTTCTTAACTAGCA 58.101 37.037 0.00 0.00 0.00 3.49
3104 3447 8.349983 CCATTCTACTCTCTCTTCTTAACTAGC 58.650 40.741 0.00 0.00 0.00 3.42
3105 3448 9.403583 ACCATTCTACTCTCTCTTCTTAACTAG 57.596 37.037 0.00 0.00 0.00 2.57
3106 3449 9.179909 CACCATTCTACTCTCTCTTCTTAACTA 57.820 37.037 0.00 0.00 0.00 2.24
3107 3450 7.891183 TCACCATTCTACTCTCTCTTCTTAACT 59.109 37.037 0.00 0.00 0.00 2.24
3108 3451 7.971722 GTCACCATTCTACTCTCTCTTCTTAAC 59.028 40.741 0.00 0.00 0.00 2.01
3109 3452 7.891183 AGTCACCATTCTACTCTCTCTTCTTAA 59.109 37.037 0.00 0.00 0.00 1.85
3110 3453 7.406916 AGTCACCATTCTACTCTCTCTTCTTA 58.593 38.462 0.00 0.00 0.00 2.10
3111 3454 6.252995 AGTCACCATTCTACTCTCTCTTCTT 58.747 40.000 0.00 0.00 0.00 2.52
3112 3455 5.826643 AGTCACCATTCTACTCTCTCTTCT 58.173 41.667 0.00 0.00 0.00 2.85
3113 3456 5.067283 GGAGTCACCATTCTACTCTCTCTTC 59.933 48.000 0.00 0.00 39.65 2.87
3114 3457 4.953579 GGAGTCACCATTCTACTCTCTCTT 59.046 45.833 0.00 0.00 39.65 2.85
3115 3458 4.532834 GGAGTCACCATTCTACTCTCTCT 58.467 47.826 0.00 0.00 39.65 3.10
3116 3459 3.314080 CGGAGTCACCATTCTACTCTCTC 59.686 52.174 0.00 0.00 39.65 3.20
3117 3460 3.283751 CGGAGTCACCATTCTACTCTCT 58.716 50.000 0.00 0.00 39.65 3.10
3118 3461 2.359531 CCGGAGTCACCATTCTACTCTC 59.640 54.545 0.00 0.00 39.65 3.20
3119 3462 2.025226 TCCGGAGTCACCATTCTACTCT 60.025 50.000 0.00 0.00 39.65 3.24
3120 3463 2.359531 CTCCGGAGTCACCATTCTACTC 59.640 54.545 24.04 0.00 39.12 2.59
3121 3464 2.025226 TCTCCGGAGTCACCATTCTACT 60.025 50.000 30.17 0.00 38.90 2.57
3122 3465 2.376109 TCTCCGGAGTCACCATTCTAC 58.624 52.381 30.17 0.00 38.90 2.59
3123 3466 2.820728 TCTCCGGAGTCACCATTCTA 57.179 50.000 30.17 4.62 38.90 2.10
3124 3467 1.938585 TTCTCCGGAGTCACCATTCT 58.061 50.000 30.17 0.00 38.90 2.40
3125 3468 2.762535 TTTCTCCGGAGTCACCATTC 57.237 50.000 30.17 0.00 38.90 2.67
3126 3469 3.146847 GTTTTTCTCCGGAGTCACCATT 58.853 45.455 30.17 0.00 38.90 3.16
3127 3470 2.779506 GTTTTTCTCCGGAGTCACCAT 58.220 47.619 30.17 0.00 38.90 3.55
3128 3471 1.539496 CGTTTTTCTCCGGAGTCACCA 60.539 52.381 30.17 8.66 38.90 4.17
3129 3472 1.145803 CGTTTTTCTCCGGAGTCACC 58.854 55.000 30.17 14.54 0.00 4.02
3137 3480 1.463444 CCTTAGCACCGTTTTTCTCCG 59.537 52.381 0.00 0.00 0.00 4.63
3138 3481 2.483106 GTCCTTAGCACCGTTTTTCTCC 59.517 50.000 0.00 0.00 0.00 3.71
3139 3482 2.157085 CGTCCTTAGCACCGTTTTTCTC 59.843 50.000 0.00 0.00 0.00 2.87
3140 3483 2.140717 CGTCCTTAGCACCGTTTTTCT 58.859 47.619 0.00 0.00 0.00 2.52
3141 3484 1.869132 ACGTCCTTAGCACCGTTTTTC 59.131 47.619 0.00 0.00 0.00 2.29
3142 3485 1.600485 CACGTCCTTAGCACCGTTTTT 59.400 47.619 0.00 0.00 0.00 1.94
3143 3486 1.223187 CACGTCCTTAGCACCGTTTT 58.777 50.000 0.00 0.00 0.00 2.43
3144 3487 0.105408 ACACGTCCTTAGCACCGTTT 59.895 50.000 0.00 0.00 0.00 3.60
3145 3488 0.961019 TACACGTCCTTAGCACCGTT 59.039 50.000 0.00 0.00 0.00 4.44
3146 3489 0.242017 GTACACGTCCTTAGCACCGT 59.758 55.000 0.00 0.00 0.00 4.83
3147 3490 0.457337 GGTACACGTCCTTAGCACCG 60.457 60.000 0.00 0.00 0.00 4.94
3148 3491 0.893447 AGGTACACGTCCTTAGCACC 59.107 55.000 0.00 0.00 30.18 5.01
3149 3492 2.098770 CCTAGGTACACGTCCTTAGCAC 59.901 54.545 0.00 0.00 36.60 4.40
3150 3493 2.291153 ACCTAGGTACACGTCCTTAGCA 60.291 50.000 14.41 0.00 36.60 3.49
3151 3494 2.098770 CACCTAGGTACACGTCCTTAGC 59.901 54.545 15.80 0.00 36.60 3.09
3152 3495 2.686915 CCACCTAGGTACACGTCCTTAG 59.313 54.545 15.80 0.00 36.60 2.18
3153 3496 2.308570 TCCACCTAGGTACACGTCCTTA 59.691 50.000 15.80 0.00 39.02 2.69
3154 3497 1.076024 TCCACCTAGGTACACGTCCTT 59.924 52.381 15.80 0.00 39.02 3.36
3155 3498 0.700564 TCCACCTAGGTACACGTCCT 59.299 55.000 15.80 0.00 39.02 3.85
3156 3499 1.475682 CTTCCACCTAGGTACACGTCC 59.524 57.143 15.80 0.00 39.02 4.79
3157 3500 1.135170 GCTTCCACCTAGGTACACGTC 60.135 57.143 15.80 0.00 39.02 4.34
3158 3501 0.893447 GCTTCCACCTAGGTACACGT 59.107 55.000 15.80 0.00 39.02 4.49
3159 3502 0.892755 TGCTTCCACCTAGGTACACG 59.107 55.000 15.80 1.48 39.02 4.49
3160 3503 1.621814 TGTGCTTCCACCTAGGTACAC 59.378 52.381 15.80 17.00 41.35 2.90
3161 3504 2.018355 TGTGCTTCCACCTAGGTACA 57.982 50.000 15.80 11.58 41.35 2.90
3162 3505 3.629142 ATTGTGCTTCCACCTAGGTAC 57.371 47.619 15.80 8.77 41.35 3.34
3163 3506 3.844211 AGAATTGTGCTTCCACCTAGGTA 59.156 43.478 15.80 0.00 41.35 3.08
3164 3507 2.644798 AGAATTGTGCTTCCACCTAGGT 59.355 45.455 9.21 9.21 41.35 3.08
3165 3508 3.012518 CAGAATTGTGCTTCCACCTAGG 58.987 50.000 7.41 7.41 41.35 3.02
3166 3509 3.937706 CTCAGAATTGTGCTTCCACCTAG 59.062 47.826 0.00 0.00 41.35 3.02
3167 3510 3.327757 ACTCAGAATTGTGCTTCCACCTA 59.672 43.478 0.00 0.00 41.35 3.08
3168 3511 2.107204 ACTCAGAATTGTGCTTCCACCT 59.893 45.455 0.00 0.00 41.35 4.00
3169 3512 2.485814 GACTCAGAATTGTGCTTCCACC 59.514 50.000 0.00 0.00 41.35 4.61
3170 3513 3.406764 AGACTCAGAATTGTGCTTCCAC 58.593 45.455 0.00 0.00 42.40 4.02
3171 3514 3.777106 AGACTCAGAATTGTGCTTCCA 57.223 42.857 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.