Multiple sequence alignment - TraesCS7A01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G336900 chr7A 100.000 5492 0 0 1 5492 493084858 493090349 0.000000e+00 10142.0
1 TraesCS7A01G336900 chr7D 91.857 2149 112 30 3046 5166 442201001 442203114 0.000000e+00 2940.0
2 TraesCS7A01G336900 chr7D 90.583 2283 113 43 837 3071 442198761 442200989 0.000000e+00 2931.0
3 TraesCS7A01G336900 chr7D 90.731 766 55 12 1 762 442168191 442168944 0.000000e+00 1007.0
4 TraesCS7A01G336900 chr7D 79.859 283 36 11 5218 5492 442203115 442203384 2.610000e-43 187.0
5 TraesCS7A01G336900 chr7D 76.636 321 68 6 292 608 137025481 137025164 2.630000e-38 171.0
6 TraesCS7A01G336900 chr7D 94.030 67 2 2 2923 2988 309025299 309025234 3.500000e-17 100.0
7 TraesCS7A01G336900 chr7B 91.751 2073 112 23 720 2751 458781549 458783603 0.000000e+00 2826.0
8 TraesCS7A01G336900 chr7B 94.660 1030 48 4 3489 4518 458786298 458787320 0.000000e+00 1591.0
9 TraesCS7A01G336900 chr7B 85.449 969 76 25 4546 5492 458787309 458788234 0.000000e+00 948.0
10 TraesCS7A01G336900 chr7B 88.528 462 40 9 303 762 458631086 458631536 1.040000e-151 547.0
11 TraesCS7A01G336900 chr7B 87.819 353 30 4 3054 3399 458783883 458784229 8.570000e-108 401.0
12 TraesCS7A01G336900 chr7B 92.116 241 16 3 1 240 458621252 458621490 2.450000e-88 337.0
13 TraesCS7A01G336900 chr7B 95.455 66 2 1 2923 2988 428959629 428959693 2.710000e-18 104.0
14 TraesCS7A01G336900 chr7B 84.043 94 5 2 3393 3486 458786118 458786201 1.270000e-11 82.4
15 TraesCS7A01G336900 chr5B 82.098 553 87 8 86 630 552895239 552894691 3.880000e-126 462.0
16 TraesCS7A01G336900 chr4D 81.818 539 89 6 83 614 371801743 371801207 1.400000e-120 444.0
17 TraesCS7A01G336900 chr4D 82.524 309 39 11 84 382 30384564 30384867 1.960000e-64 257.0
18 TraesCS7A01G336900 chr5A 81.159 552 94 6 86 630 571456712 571456164 8.450000e-118 435.0
19 TraesCS7A01G336900 chr5D 80.995 563 86 16 78 627 385967352 385967906 1.410000e-115 427.0
20 TraesCS7A01G336900 chr4B 80.645 496 89 4 141 630 456612770 456612276 1.440000e-100 377.0
21 TraesCS7A01G336900 chr4B 95.455 66 2 1 2923 2988 241516308 241516244 2.710000e-18 104.0
22 TraesCS7A01G336900 chr6D 78.995 557 90 12 82 627 441715061 441715601 6.770000e-94 355.0
23 TraesCS7A01G336900 chr6B 76.799 556 105 9 82 627 667249210 667249751 1.940000e-74 291.0
24 TraesCS7A01G336900 chr6A 95.455 66 2 1 2923 2988 74110738 74110802 2.710000e-18 104.0
25 TraesCS7A01G336900 chr1D 95.455 66 2 1 2923 2988 204041059 204040995 2.710000e-18 104.0
26 TraesCS7A01G336900 chr1B 95.455 66 2 1 2923 2988 355408184 355408120 2.710000e-18 104.0
27 TraesCS7A01G336900 chr1A 94.118 68 2 2 2923 2989 259058830 259058764 9.730000e-18 102.0
28 TraesCS7A01G336900 chrUn 93.939 66 3 1 2923 2988 348422357 348422421 1.260000e-16 99.0
29 TraesCS7A01G336900 chrUn 80.612 98 13 5 5397 5492 62146042 62145949 2.740000e-08 71.3
30 TraesCS7A01G336900 chr3B 93.939 66 3 1 2923 2988 149477376 149477440 1.260000e-16 99.0
31 TraesCS7A01G336900 chr2A 93.750 64 1 1 4487 4547 413187474 413187537 5.860000e-15 93.5
32 TraesCS7A01G336900 chr2B 91.379 58 5 0 4407 4464 386497035 386497092 4.560000e-11 80.5
33 TraesCS7A01G336900 chr2D 93.750 48 3 0 4417 4464 318404986 318405033 7.630000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G336900 chr7A 493084858 493090349 5491 False 10142.000000 10142 100.0000 1 5492 1 chr7A.!!$F1 5491
1 TraesCS7A01G336900 chr7D 442198761 442203384 4623 False 2019.333333 2940 87.4330 837 5492 3 chr7D.!!$F2 4655
2 TraesCS7A01G336900 chr7D 442168191 442168944 753 False 1007.000000 1007 90.7310 1 762 1 chr7D.!!$F1 761
3 TraesCS7A01G336900 chr7B 458781549 458788234 6685 False 1169.680000 2826 88.7444 720 5492 5 chr7B.!!$F4 4772
4 TraesCS7A01G336900 chr5B 552894691 552895239 548 True 462.000000 462 82.0980 86 630 1 chr5B.!!$R1 544
5 TraesCS7A01G336900 chr4D 371801207 371801743 536 True 444.000000 444 81.8180 83 614 1 chr4D.!!$R1 531
6 TraesCS7A01G336900 chr5A 571456164 571456712 548 True 435.000000 435 81.1590 86 630 1 chr5A.!!$R1 544
7 TraesCS7A01G336900 chr5D 385967352 385967906 554 False 427.000000 427 80.9950 78 627 1 chr5D.!!$F1 549
8 TraesCS7A01G336900 chr6D 441715061 441715601 540 False 355.000000 355 78.9950 82 627 1 chr6D.!!$F1 545
9 TraesCS7A01G336900 chr6B 667249210 667249751 541 False 291.000000 291 76.7990 82 627 1 chr6B.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 339 0.108138 GAAGGGATGAGGGTGTGACG 60.108 60.0 0.00 0.00 0.00 4.35 F
955 1007 0.689623 CAAACTCCAGCCTCTCCAGT 59.310 55.0 0.00 0.00 0.00 4.00 F
1872 1942 0.030101 GCTTGCGGCAACAGTGTTTA 59.970 50.0 12.11 0.00 41.35 2.01 F
2522 2603 0.310854 GGGTACAGCAACAGTGTTGC 59.689 55.0 41.06 41.06 45.22 4.17 F
3834 5974 0.036388 TCTCAACGCCCACTCCAATC 60.036 55.0 0.00 0.00 0.00 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1289 1341 0.595053 CGCCTCGTCGAGCACAATAT 60.595 55.000 17.02 0.0 0.00 1.28 R
2516 2597 0.443869 ATTCATCTGACGCGCAACAC 59.556 50.000 5.73 0.0 0.00 3.32 R
2706 2788 0.957362 GCTTTCTCAAGGCAGCTTGT 59.043 50.000 0.00 0.0 35.91 3.16 R
3912 6052 1.278127 CTTCCGGCTAGAGGTTCCAAA 59.722 52.381 0.00 0.0 0.00 3.28 R
5364 7545 0.673644 CCTTGTCCGGATGAGCGTTT 60.674 55.000 7.81 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.299541 CCAAGCGGATATTTGCGTCT 58.700 50.000 0.00 0.00 39.14 4.18
27 28 1.400494 GCGGATATTTGCGTCTGGTTT 59.600 47.619 0.00 0.00 39.14 3.27
49 50 2.090550 TGCTCCTCCCATCAAGATCCTA 60.091 50.000 0.00 0.00 0.00 2.94
57 58 3.708631 CCCATCAAGATCCTAGTGTGAGT 59.291 47.826 0.00 0.00 0.00 3.41
115 116 6.364701 CATCTAATCCCCAAGGTGTATTTCA 58.635 40.000 0.00 0.00 0.00 2.69
259 265 6.647895 GTCAAGCCATGTGATTCTTCATTTTT 59.352 34.615 0.00 0.00 33.56 1.94
300 306 4.012374 CACATTGAGTCCTTAGGCATGTT 58.988 43.478 0.00 0.00 0.00 2.71
323 332 5.893500 TGATACTACTAGAAGGGATGAGGG 58.106 45.833 0.00 0.00 0.00 4.30
330 339 0.108138 GAAGGGATGAGGGTGTGACG 60.108 60.000 0.00 0.00 0.00 4.35
417 426 9.900112 AGAAATTCCACTATACCTACCTATTCT 57.100 33.333 0.00 0.00 0.00 2.40
437 446 2.674563 CTTTCACCTCGGTGCCACCA 62.675 60.000 15.45 0.08 45.04 4.17
476 487 3.322254 AGCCACCGAGAAACTCATATAGG 59.678 47.826 0.00 0.00 0.00 2.57
485 496 7.119262 CCGAGAAACTCATATAGGTGTTTGTTT 59.881 37.037 18.90 7.38 33.49 2.83
494 507 8.919145 TCATATAGGTGTTTGTTTCAAAACCTT 58.081 29.630 21.36 15.67 38.93 3.50
503 516 8.722394 TGTTTGTTTCAAAACCTTATTTGTTCC 58.278 29.630 3.33 0.00 40.40 3.62
633 651 5.607119 AGAATGTACCACGTGCTAAAAAG 57.393 39.130 10.91 0.00 0.00 2.27
636 654 4.010667 TGTACCACGTGCTAAAAAGGAT 57.989 40.909 10.91 0.00 0.00 3.24
637 655 5.149973 TGTACCACGTGCTAAAAAGGATA 57.850 39.130 10.91 0.00 0.00 2.59
671 689 3.118884 GGAAGCTATGAAACGGTACTCCA 60.119 47.826 0.00 0.00 0.00 3.86
672 690 3.802948 AGCTATGAAACGGTACTCCAG 57.197 47.619 0.00 0.00 0.00 3.86
676 694 4.443034 GCTATGAAACGGTACTCCAGGATT 60.443 45.833 0.00 0.00 0.00 3.01
767 790 7.982354 GCAACTTATGTACTCCTAGATGACTTT 59.018 37.037 0.00 0.00 0.00 2.66
768 791 9.522804 CAACTTATGTACTCCTAGATGACTTTC 57.477 37.037 0.00 0.00 0.00 2.62
769 792 8.824756 ACTTATGTACTCCTAGATGACTTTCA 57.175 34.615 0.00 0.00 0.00 2.69
770 793 9.427821 ACTTATGTACTCCTAGATGACTTTCAT 57.572 33.333 0.00 0.00 40.34 2.57
788 811 9.503427 GACTTTCATATTAATTTTCTTGACCCG 57.497 33.333 0.00 0.00 0.00 5.28
789 812 9.238368 ACTTTCATATTAATTTTCTTGACCCGA 57.762 29.630 0.00 0.00 0.00 5.14
792 815 7.703328 TCATATTAATTTTCTTGACCCGAAGC 58.297 34.615 0.00 0.00 0.00 3.86
798 821 3.973206 TTCTTGACCCGAAGCATTCTA 57.027 42.857 0.00 0.00 44.75 2.10
832 855 4.794648 CCGGCCGGGAATGAGCAA 62.795 66.667 37.42 0.00 38.47 3.91
834 857 2.361104 GGCCGGGAATGAGCAACA 60.361 61.111 2.18 0.00 0.00 3.33
835 858 1.754234 GGCCGGGAATGAGCAACAT 60.754 57.895 2.18 0.00 41.45 2.71
847 888 1.078426 GCAACATGGTACCGAGCCT 60.078 57.895 7.57 0.00 0.00 4.58
849 890 1.202651 GCAACATGGTACCGAGCCTAT 60.203 52.381 7.57 0.00 0.00 2.57
906 954 3.090532 GACCGCCCCCATTCCTCT 61.091 66.667 0.00 0.00 0.00 3.69
907 955 3.090532 ACCGCCCCCATTCCTCTC 61.091 66.667 0.00 0.00 0.00 3.20
908 956 2.770048 CCGCCCCCATTCCTCTCT 60.770 66.667 0.00 0.00 0.00 3.10
955 1007 0.689623 CAAACTCCAGCCTCTCCAGT 59.310 55.000 0.00 0.00 0.00 4.00
969 1021 3.643792 CTCTCCAGTAATCGATCCCCTTT 59.356 47.826 0.00 0.00 0.00 3.11
970 1022 3.641906 TCTCCAGTAATCGATCCCCTTTC 59.358 47.826 0.00 0.00 0.00 2.62
1311 1363 4.415332 GTGCTCGACGAGGCGGAA 62.415 66.667 25.31 1.08 0.00 4.30
1350 1402 3.895232 TCTCTTCCTGGTTGCAGATAC 57.105 47.619 0.00 0.00 0.00 2.24
1351 1403 2.501723 TCTCTTCCTGGTTGCAGATACC 59.498 50.000 0.00 0.00 36.17 2.73
1356 1408 0.811616 CTGGTTGCAGATACCGGCTC 60.812 60.000 0.00 0.00 38.55 4.70
1358 1410 1.220749 GTTGCAGATACCGGCTCCA 59.779 57.895 0.00 0.00 34.50 3.86
1361 1413 0.106708 TGCAGATACCGGCTCCAATC 59.893 55.000 0.00 0.00 34.50 2.67
1380 1432 2.124445 GGGGGCACGGGATGTTAC 60.124 66.667 0.00 0.00 0.00 2.50
1382 1434 2.266689 GGGCACGGGATGTTACGT 59.733 61.111 0.00 0.00 45.25 3.57
1383 1435 1.376295 GGGCACGGGATGTTACGTT 60.376 57.895 0.00 0.00 42.04 3.99
1384 1436 0.956902 GGGCACGGGATGTTACGTTT 60.957 55.000 0.00 0.00 42.04 3.60
1388 1440 2.674357 GCACGGGATGTTACGTTTATGT 59.326 45.455 0.00 0.00 42.04 2.29
1398 1450 7.691050 GGATGTTACGTTTATGTGCTTAGTTTC 59.309 37.037 0.00 0.00 0.00 2.78
1408 1460 3.904339 TGTGCTTAGTTTCCTCCTCTTCT 59.096 43.478 0.00 0.00 0.00 2.85
1416 1468 0.615331 TCCTCCTCTTCTGCGCATTT 59.385 50.000 12.24 0.00 0.00 2.32
1445 1497 1.339055 TGAGAAGGAGATTTGGCCACG 60.339 52.381 3.88 0.00 0.00 4.94
1462 1514 4.142881 GGCCACGTTGTTTAGATCTTTCTC 60.143 45.833 0.00 0.00 33.17 2.87
1605 1659 6.069963 ACCAAGTACAATCTTGCTCTATTCCT 60.070 38.462 0.00 0.00 42.16 3.36
1606 1660 6.825721 CCAAGTACAATCTTGCTCTATTCCTT 59.174 38.462 0.00 0.00 42.16 3.36
1607 1661 7.987458 CCAAGTACAATCTTGCTCTATTCCTTA 59.013 37.037 0.00 0.00 42.16 2.69
1737 1807 3.516700 TCATGCCTGTCCGATCATCATAT 59.483 43.478 0.00 0.00 0.00 1.78
1765 1835 4.551702 TCTAACATGCTTGCTAACTGGA 57.448 40.909 0.00 0.00 0.00 3.86
1838 1908 5.039920 TCATTGGATGATTCTGTTCGGAT 57.960 39.130 0.00 0.00 33.59 4.18
1843 1913 5.118990 TGGATGATTCTGTTCGGATCTTTC 58.881 41.667 0.00 0.00 0.00 2.62
1845 1915 5.586243 GGATGATTCTGTTCGGATCTTTCAA 59.414 40.000 0.00 0.00 0.00 2.69
1872 1942 0.030101 GCTTGCGGCAACAGTGTTTA 59.970 50.000 12.11 0.00 41.35 2.01
1874 1944 2.384382 CTTGCGGCAACAGTGTTTAAG 58.616 47.619 12.11 1.47 0.00 1.85
1875 1945 1.384525 TGCGGCAACAGTGTTTAAGT 58.615 45.000 5.57 0.00 0.00 2.24
1985 2060 1.352083 AGAGTGTGAGCAAGCCCTTA 58.648 50.000 0.00 0.00 0.00 2.69
2051 2126 1.164041 CCCGCGACATTCCCCATAAC 61.164 60.000 8.23 0.00 0.00 1.89
2324 2405 2.880443 AGAAAGCAGGCATCAAGGAAA 58.120 42.857 0.00 0.00 0.00 3.13
2334 2415 3.068024 GGCATCAAGGAAACAAACTCACA 59.932 43.478 0.00 0.00 0.00 3.58
2452 2533 5.834742 TGCAGCCTAAAATTGGTGATGATAT 59.165 36.000 0.00 0.00 0.00 1.63
2489 2570 2.354199 GGAATGCAGTGAAGAGCTAAGC 59.646 50.000 0.00 0.00 0.00 3.09
2516 2597 2.568623 AAGAAGGGGTACAGCAACAG 57.431 50.000 0.00 0.00 0.00 3.16
2522 2603 0.310854 GGGTACAGCAACAGTGTTGC 59.689 55.000 41.06 41.06 45.22 4.17
2647 2728 7.488150 GGTATTTCCAATCCTTCGATTTTGTTC 59.512 37.037 0.00 0.00 36.54 3.18
2648 2729 6.398234 TTTCCAATCCTTCGATTTTGTTCA 57.602 33.333 0.00 0.00 36.54 3.18
2663 2744 8.427012 CGATTTTGTTCATTTAGTGGTTTGATG 58.573 33.333 0.00 0.00 0.00 3.07
2664 2745 9.474920 GATTTTGTTCATTTAGTGGTTTGATGA 57.525 29.630 0.00 0.00 0.00 2.92
2666 2747 9.474920 TTTTGTTCATTTAGTGGTTTGATGATC 57.525 29.630 0.00 0.00 0.00 2.92
2667 2748 7.757941 TGTTCATTTAGTGGTTTGATGATCA 57.242 32.000 0.00 0.00 0.00 2.92
2686 2768 6.283694 TGATCATATCTTGGTAGTTGCAGAC 58.716 40.000 0.00 0.00 0.00 3.51
2706 2788 6.108687 CAGACCTGTTTGATATCTAGTTGCA 58.891 40.000 3.98 0.00 0.00 4.08
2711 2793 6.182039 TGTTTGATATCTAGTTGCACAAGC 57.818 37.500 3.98 0.00 42.57 4.01
2764 2846 7.872163 TTAGAATGCTGCAGTTAAAATGTTG 57.128 32.000 16.64 0.00 0.00 3.33
2765 2847 4.687483 AGAATGCTGCAGTTAAAATGTTGC 59.313 37.500 16.64 0.00 37.09 4.17
2766 2848 3.731652 TGCTGCAGTTAAAATGTTGCT 57.268 38.095 16.64 0.00 37.45 3.91
2767 2849 3.641648 TGCTGCAGTTAAAATGTTGCTC 58.358 40.909 16.64 0.00 37.45 4.26
2768 2850 3.318839 TGCTGCAGTTAAAATGTTGCTCT 59.681 39.130 16.64 0.00 37.45 4.09
2769 2851 3.916776 GCTGCAGTTAAAATGTTGCTCTC 59.083 43.478 16.64 0.00 37.45 3.20
2770 2852 4.557296 GCTGCAGTTAAAATGTTGCTCTCA 60.557 41.667 16.64 0.00 37.45 3.27
2797 2879 6.314899 TGGGGTTTCCAGTTTTAAAAATGT 57.685 33.333 22.64 1.04 41.46 2.71
2798 2880 6.116126 TGGGGTTTCCAGTTTTAAAAATGTG 58.884 36.000 22.64 15.58 41.46 3.21
2799 2881 5.008217 GGGGTTTCCAGTTTTAAAAATGTGC 59.992 40.000 22.64 11.74 32.52 4.57
2800 2882 5.586643 GGGTTTCCAGTTTTAAAAATGTGCA 59.413 36.000 22.64 7.49 32.52 4.57
2801 2883 6.262049 GGGTTTCCAGTTTTAAAAATGTGCAT 59.738 34.615 22.64 0.00 32.52 3.96
2802 2884 7.131565 GGTTTCCAGTTTTAAAAATGTGCATG 58.868 34.615 22.64 10.33 32.52 4.06
2807 2889 7.714377 TCCAGTTTTAAAAATGTGCATGAATGT 59.286 29.630 22.64 0.00 32.52 2.71
2841 2923 3.776969 TCATGGATCTTGGTGCTAGACTT 59.223 43.478 0.00 0.00 0.00 3.01
2842 2924 4.225942 TCATGGATCTTGGTGCTAGACTTT 59.774 41.667 0.00 0.00 0.00 2.66
2843 2925 3.942829 TGGATCTTGGTGCTAGACTTTG 58.057 45.455 0.00 0.00 0.00 2.77
2866 2948 6.157904 TGTGATATTCCACTGCATTGTTTTG 58.842 36.000 3.14 0.00 37.89 2.44
2871 2953 4.044336 TCCACTGCATTGTTTTGTTGAG 57.956 40.909 3.14 0.00 0.00 3.02
2893 2975 6.321181 TGAGTTCCTTTTGTTAAGCAGTCAAT 59.679 34.615 0.00 0.00 0.00 2.57
2937 3037 5.728471 TGAATGTCCAACAACAACAACAAT 58.272 33.333 0.00 0.00 31.81 2.71
2991 3095 5.516044 TGGAGTAGGCTAGAGTTGAACATA 58.484 41.667 0.00 0.00 0.00 2.29
2992 3096 5.360144 TGGAGTAGGCTAGAGTTGAACATAC 59.640 44.000 0.00 0.00 0.00 2.39
2999 3103 6.651225 AGGCTAGAGTTGAACATACTGAAAAC 59.349 38.462 0.00 0.00 0.00 2.43
3011 3115 5.992217 ACATACTGAAAACACTTCCAGAGTC 59.008 40.000 0.00 0.00 36.10 3.36
3012 3116 4.762289 ACTGAAAACACTTCCAGAGTCT 57.238 40.909 0.00 0.00 36.10 3.24
3013 3117 5.871396 ACTGAAAACACTTCCAGAGTCTA 57.129 39.130 0.00 0.00 36.10 2.59
3014 3118 6.235231 ACTGAAAACACTTCCAGAGTCTAA 57.765 37.500 0.00 0.00 36.10 2.10
3015 3119 6.049790 ACTGAAAACACTTCCAGAGTCTAAC 58.950 40.000 0.00 0.00 36.10 2.34
3016 3120 6.127026 ACTGAAAACACTTCCAGAGTCTAACT 60.127 38.462 0.00 0.00 36.10 2.24
3017 3121 7.069578 ACTGAAAACACTTCCAGAGTCTAACTA 59.930 37.037 0.00 0.00 36.10 2.24
3040 3144 6.360370 ACAACATACCAGTAGTGTCTGAAT 57.640 37.500 0.00 0.00 37.61 2.57
3051 3155 7.984050 CCAGTAGTGTCTGAATGATGAATAAGT 59.016 37.037 0.00 0.00 37.61 2.24
3085 3228 8.307582 AGCAGTAGGATAGTTGTATAGTTTGT 57.692 34.615 0.00 0.00 0.00 2.83
3092 3235 8.603304 AGGATAGTTGTATAGTTTGTTGGACTT 58.397 33.333 0.00 0.00 0.00 3.01
3097 3240 7.226720 AGTTGTATAGTTTGTTGGACTTCTGTG 59.773 37.037 0.00 0.00 0.00 3.66
3103 3246 5.123979 AGTTTGTTGGACTTCTGTGTTCTTC 59.876 40.000 0.00 0.00 0.00 2.87
3126 3269 4.023792 CCATTTTTGGCTTTCTTTTCTGCC 60.024 41.667 0.00 0.00 45.10 4.85
3134 3277 4.034394 GGCTTTCTTTTCTGCCTTTGTTTG 59.966 41.667 0.00 0.00 41.92 2.93
3135 3278 4.869861 GCTTTCTTTTCTGCCTTTGTTTGA 59.130 37.500 0.00 0.00 0.00 2.69
3148 3291 5.281727 CCTTTGTTTGAAGGCTGTAAGTTC 58.718 41.667 0.00 0.00 39.75 3.01
3150 3293 2.875933 TGTTTGAAGGCTGTAAGTTCGG 59.124 45.455 0.00 0.00 35.30 4.30
3197 3340 7.545362 AATACGAGATGATGCATATTTAGGC 57.455 36.000 0.00 0.00 0.00 3.93
3204 3347 3.616821 TGATGCATATTTAGGCGCGTATC 59.383 43.478 11.07 4.58 35.44 2.24
3212 3355 3.728076 TTAGGCGCGTATCTGAGAAAT 57.272 42.857 11.07 0.00 0.00 2.17
3246 3389 1.200020 GAGCGTTTTCTGGGAATGTGG 59.800 52.381 0.00 0.00 0.00 4.17
3248 3391 1.068541 GCGTTTTCTGGGAATGTGGAC 60.069 52.381 0.00 0.00 0.00 4.02
3250 3393 2.226437 CGTTTTCTGGGAATGTGGACAG 59.774 50.000 0.00 0.00 0.00 3.51
3268 3411 6.038271 GTGGACAGCTGGTAATATTTACAAGG 59.962 42.308 19.93 0.00 0.00 3.61
3314 3457 7.795431 AACATAACATTTCACGCTGTATTTG 57.205 32.000 0.00 0.00 0.00 2.32
3339 3490 5.565455 TTTTTGCATTGAAGGGGAAGAAT 57.435 34.783 0.00 0.00 0.00 2.40
3340 3491 5.565455 TTTTGCATTGAAGGGGAAGAATT 57.435 34.783 0.00 0.00 0.00 2.17
3341 3492 6.678568 TTTTGCATTGAAGGGGAAGAATTA 57.321 33.333 0.00 0.00 0.00 1.40
3342 3493 6.678568 TTTGCATTGAAGGGGAAGAATTAA 57.321 33.333 0.00 0.00 0.00 1.40
3343 3494 5.659440 TGCATTGAAGGGGAAGAATTAAC 57.341 39.130 0.00 0.00 0.00 2.01
3345 3496 5.185635 TGCATTGAAGGGGAAGAATTAACAG 59.814 40.000 0.00 0.00 0.00 3.16
3346 3497 5.185828 GCATTGAAGGGGAAGAATTAACAGT 59.814 40.000 0.00 0.00 0.00 3.55
3347 3498 6.625960 GCATTGAAGGGGAAGAATTAACAGTC 60.626 42.308 0.00 0.00 0.00 3.51
3348 3499 5.576563 TGAAGGGGAAGAATTAACAGTCA 57.423 39.130 0.00 0.00 0.00 3.41
3349 3500 5.947663 TGAAGGGGAAGAATTAACAGTCAA 58.052 37.500 0.00 0.00 0.00 3.18
3350 3501 6.552008 TGAAGGGGAAGAATTAACAGTCAAT 58.448 36.000 0.00 0.00 0.00 2.57
3351 3502 7.695055 TGAAGGGGAAGAATTAACAGTCAATA 58.305 34.615 0.00 0.00 0.00 1.90
3430 5476 3.560105 TGACACCAACATGGATGTGAAA 58.440 40.909 15.02 3.20 40.96 2.69
3431 5477 3.956848 TGACACCAACATGGATGTGAAAA 59.043 39.130 15.02 1.29 40.96 2.29
3432 5478 4.403752 TGACACCAACATGGATGTGAAAAA 59.596 37.500 15.02 0.00 40.96 1.94
3433 5479 4.692228 ACACCAACATGGATGTGAAAAAC 58.308 39.130 15.02 0.00 40.96 2.43
3435 5481 4.746115 CACCAACATGGATGTGAAAAACTG 59.254 41.667 2.85 0.00 40.96 3.16
3436 5482 4.202243 ACCAACATGGATGTGAAAAACTGG 60.202 41.667 2.85 0.00 40.96 4.00
3440 5486 4.834496 ACATGGATGTGAAAAACTGGTCAT 59.166 37.500 0.00 0.00 40.03 3.06
3441 5487 5.047802 ACATGGATGTGAAAAACTGGTCATC 60.048 40.000 0.00 0.00 40.03 2.92
3442 5488 4.468713 TGGATGTGAAAAACTGGTCATCA 58.531 39.130 0.00 0.00 0.00 3.07
3443 5489 9.133326 ACATGGATGTGAAAAACTGGTCATCAG 62.133 40.741 0.00 0.00 43.41 2.90
3444 5490 4.761739 GGATGTGAAAAACTGGTCATCAGA 59.238 41.667 0.00 0.00 46.18 3.27
3445 5491 5.241506 GGATGTGAAAAACTGGTCATCAGAA 59.758 40.000 0.00 0.00 46.18 3.02
3446 5492 5.756195 TGTGAAAAACTGGTCATCAGAAG 57.244 39.130 0.00 0.00 46.18 2.85
3447 5493 5.436175 TGTGAAAAACTGGTCATCAGAAGA 58.564 37.500 0.00 0.00 46.18 2.87
3448 5494 6.064060 TGTGAAAAACTGGTCATCAGAAGAT 58.936 36.000 0.00 0.00 46.18 2.40
3449 5495 6.547141 TGTGAAAAACTGGTCATCAGAAGATT 59.453 34.615 0.00 0.00 46.18 2.40
3461 5507 7.362401 GGTCATCAGAAGATTGTTAATGTTGCT 60.362 37.037 0.00 0.00 30.20 3.91
3464 5510 8.886719 CATCAGAAGATTGTTAATGTTGCTAGA 58.113 33.333 0.00 0.00 30.20 2.43
3478 5524 7.664082 ATGTTGCTAGATACAAGATACATGC 57.336 36.000 0.00 0.00 30.01 4.06
3500 5640 7.369803 TGCAAAAACAAAAATACTTTGAGCA 57.630 28.000 4.32 0.00 33.83 4.26
3594 5734 6.036735 CACATGGAATTGATTTCAGCCATTTC 59.963 38.462 0.00 0.00 34.28 2.17
3620 5760 5.994054 AGTGATGCTTACCACATGTCATATC 59.006 40.000 0.00 0.00 35.84 1.63
3621 5761 5.180117 GTGATGCTTACCACATGTCATATCC 59.820 44.000 0.00 0.00 33.72 2.59
3622 5762 3.727726 TGCTTACCACATGTCATATCCG 58.272 45.455 0.00 0.00 0.00 4.18
3623 5763 3.386402 TGCTTACCACATGTCATATCCGA 59.614 43.478 0.00 0.00 0.00 4.55
3656 5796 6.636447 TCACGTTGCTTTGACAATCTATTTTG 59.364 34.615 0.00 0.00 0.00 2.44
3664 5804 9.677567 GCTTTGACAATCTATTTTGTACTTCAA 57.322 29.630 0.00 0.00 39.85 2.69
3719 5859 8.197592 TCAGTATTTTCCTAGGTGACTTGTTA 57.802 34.615 9.08 0.00 43.67 2.41
3726 5866 9.856162 TTTTCCTAGGTGACTTGTTACTTTATT 57.144 29.630 9.08 0.00 43.67 1.40
3768 5908 3.126001 TGACACACATCCTTTCAGGTC 57.874 47.619 0.00 0.00 36.53 3.85
3774 5914 0.257039 CATCCTTTCAGGTCCCAGGG 59.743 60.000 0.00 0.00 36.53 4.45
3834 5974 0.036388 TCTCAACGCCCACTCCAATC 60.036 55.000 0.00 0.00 0.00 2.67
3864 6004 4.269363 CGTCCTCGAAGTAAAACACAGTTT 59.731 41.667 0.00 0.00 39.71 2.66
3900 6040 6.584942 CACATTTCACATTGTCTGATCCAAAG 59.415 38.462 0.00 0.00 0.00 2.77
3912 6052 5.069119 GTCTGATCCAAAGTTTCCAAACCTT 59.931 40.000 0.00 0.00 39.71 3.50
3984 6124 2.632028 AGCACAGAAGACAGTGAGACAT 59.368 45.455 0.00 0.00 35.94 3.06
3990 6130 4.514441 CAGAAGACAGTGAGACATTTGCTT 59.486 41.667 0.00 0.00 0.00 3.91
4038 6178 2.165234 TCAAGAGGCTGATCACTTCTCG 59.835 50.000 0.00 1.52 0.00 4.04
4039 6179 0.459489 AGAGGCTGATCACTTCTCGC 59.541 55.000 0.00 0.00 0.00 5.03
4047 6187 4.568359 GCTGATCACTTCTCGCTATTTGAA 59.432 41.667 0.00 0.00 0.00 2.69
4056 6196 3.678072 TCTCGCTATTTGAAACTTCACCG 59.322 43.478 0.00 0.00 36.83 4.94
4194 6334 6.096695 GTTGTCAAGGTTGAAAACTAAGCAA 58.903 36.000 15.69 2.39 46.83 3.91
4210 6350 1.294659 GCAAGCTGAACCGAGTCCAG 61.295 60.000 0.00 0.00 0.00 3.86
4215 6355 0.034059 CTGAACCGAGTCCAGCAGTT 59.966 55.000 0.00 0.00 0.00 3.16
4245 6385 6.660949 AGCCTCTAAAGAATACTGTTTTGCAT 59.339 34.615 0.00 0.00 0.00 3.96
4278 6418 5.677319 TTAATCAGTTGACCCGAAGAGAT 57.323 39.130 0.00 0.00 0.00 2.75
4617 6757 8.734218 ATAAGACTGTAAGAGACTGACGATAA 57.266 34.615 0.00 0.00 37.43 1.75
4641 6781 2.930040 CACGGATTTTATCGCTCAGTGT 59.070 45.455 0.00 0.00 32.64 3.55
4655 6795 4.569943 GCTCAGTGTATTCTGTCAAGGAA 58.430 43.478 0.00 0.00 36.85 3.36
4657 6797 4.569943 TCAGTGTATTCTGTCAAGGAAGC 58.430 43.478 0.00 0.00 36.85 3.86
4680 6820 6.091849 AGCTATCAACGCATTTCTAGCATATG 59.908 38.462 0.00 0.00 35.25 1.78
4698 6848 6.000219 GCATATGAAGGTCATGGTTATCACT 59.000 40.000 6.97 0.00 37.70 3.41
4699 6849 6.488006 GCATATGAAGGTCATGGTTATCACTT 59.512 38.462 6.97 0.00 37.70 3.16
4700 6850 7.661437 GCATATGAAGGTCATGGTTATCACTTA 59.339 37.037 6.97 0.00 37.70 2.24
4701 6851 9.212641 CATATGAAGGTCATGGTTATCACTTAG 57.787 37.037 0.00 0.00 37.70 2.18
4702 6852 6.620877 TGAAGGTCATGGTTATCACTTAGT 57.379 37.500 0.00 0.00 0.00 2.24
4703 6853 7.727578 TGAAGGTCATGGTTATCACTTAGTA 57.272 36.000 0.00 0.00 0.00 1.82
4704 6854 8.319057 TGAAGGTCATGGTTATCACTTAGTAT 57.681 34.615 0.00 0.00 0.00 2.12
4705 6855 8.421784 TGAAGGTCATGGTTATCACTTAGTATC 58.578 37.037 0.00 0.00 0.00 2.24
4706 6856 7.914427 AGGTCATGGTTATCACTTAGTATCA 57.086 36.000 0.00 0.00 0.00 2.15
4707 6857 7.727181 AGGTCATGGTTATCACTTAGTATCAC 58.273 38.462 0.00 0.00 0.00 3.06
4834 6984 9.903682 CATGCTTTATAATAAGACCAGAAATGG 57.096 33.333 0.00 0.00 0.00 3.16
4986 7140 5.659079 AGGTGTTCCTCACTTCCTCTAATAG 59.341 44.000 0.00 0.00 45.50 1.73
4988 7142 6.325286 GGTGTTCCTCACTTCCTCTAATAGAT 59.675 42.308 0.00 0.00 45.50 1.98
4989 7143 7.147637 GGTGTTCCTCACTTCCTCTAATAGATT 60.148 40.741 0.00 0.00 45.50 2.40
4990 7144 8.261522 GTGTTCCTCACTTCCTCTAATAGATTT 58.738 37.037 0.00 0.00 43.13 2.17
5029 7197 2.354510 CCTTTTTCACACAACAGCTCGA 59.645 45.455 0.00 0.00 0.00 4.04
5057 7225 5.967674 GTGCAAGAGAAATACATCCATTTCG 59.032 40.000 0.00 0.00 45.52 3.46
5065 7233 8.511604 AGAAATACATCCATTTCGTTCTTGAT 57.488 30.769 3.62 0.00 45.52 2.57
5066 7234 9.613428 AGAAATACATCCATTTCGTTCTTGATA 57.387 29.630 3.62 0.00 45.52 2.15
5081 7249 8.044309 TCGTTCTTGATATTCTTTTCCCACATA 58.956 33.333 0.00 0.00 0.00 2.29
5082 7250 8.673711 CGTTCTTGATATTCTTTTCCCACATAA 58.326 33.333 0.00 0.00 0.00 1.90
5130 7301 4.759516 TCGAAACATAGGAAGGTTTTGC 57.240 40.909 0.00 0.00 39.56 3.68
5166 7337 3.754323 TCAACCAAACGATTACATCCCAC 59.246 43.478 0.00 0.00 0.00 4.61
5167 7338 3.426787 ACCAAACGATTACATCCCACA 57.573 42.857 0.00 0.00 0.00 4.17
5168 7339 3.757270 ACCAAACGATTACATCCCACAA 58.243 40.909 0.00 0.00 0.00 3.33
5169 7340 4.340617 ACCAAACGATTACATCCCACAAT 58.659 39.130 0.00 0.00 0.00 2.71
5170 7341 4.157656 ACCAAACGATTACATCCCACAATG 59.842 41.667 0.00 0.00 0.00 2.82
5171 7342 4.439974 CCAAACGATTACATCCCACAATGG 60.440 45.833 0.00 0.00 37.25 3.16
5172 7343 3.644966 ACGATTACATCCCACAATGGT 57.355 42.857 0.00 0.00 35.17 3.55
5173 7344 3.963129 ACGATTACATCCCACAATGGTT 58.037 40.909 0.00 0.00 35.17 3.67
5174 7345 5.105567 ACGATTACATCCCACAATGGTTA 57.894 39.130 0.00 0.00 35.17 2.85
5175 7346 5.502079 ACGATTACATCCCACAATGGTTAA 58.498 37.500 0.00 0.00 35.17 2.01
5176 7347 6.126409 ACGATTACATCCCACAATGGTTAAT 58.874 36.000 0.00 0.00 35.17 1.40
5177 7348 6.262273 ACGATTACATCCCACAATGGTTAATC 59.738 38.462 0.00 0.00 35.17 1.75
5178 7349 6.293955 CGATTACATCCCACAATGGTTAATCC 60.294 42.308 0.00 0.00 35.17 3.01
5195 7366 1.568504 TCCAGGCCACGAATAGTTCT 58.431 50.000 5.01 0.00 0.00 3.01
5227 7398 3.514706 TCATGCAAAAGGTATGCCATGTT 59.485 39.130 1.54 0.00 43.16 2.71
5231 7402 3.056607 GCAAAAGGTATGCCATGTTCTGT 60.057 43.478 1.54 0.00 37.85 3.41
5249 7420 7.690228 TGTTCTGTCAACTAATTACACAACAC 58.310 34.615 0.00 0.00 30.42 3.32
5296 7475 9.844257 ATTATTGGGAATAGAGAGTCTGAAAAG 57.156 33.333 0.00 0.00 0.00 2.27
5298 7477 4.080863 TGGGAATAGAGAGTCTGAAAAGGC 60.081 45.833 0.00 0.00 0.00 4.35
5299 7478 4.163268 GGGAATAGAGAGTCTGAAAAGGCT 59.837 45.833 0.00 0.00 0.00 4.58
5300 7479 5.364157 GGGAATAGAGAGTCTGAAAAGGCTA 59.636 44.000 0.00 0.00 0.00 3.93
5309 7490 6.547510 AGAGTCTGAAAAGGCTAACAAAACAT 59.452 34.615 0.00 0.00 0.00 2.71
5316 7497 7.170658 TGAAAAGGCTAACAAAACATGCATAAC 59.829 33.333 0.00 0.00 0.00 1.89
5348 7529 4.637483 ACTAATGTCATCGCAAAATGGG 57.363 40.909 0.00 0.00 0.00 4.00
5349 7530 4.016444 ACTAATGTCATCGCAAAATGGGT 58.984 39.130 0.00 0.00 0.00 4.51
5350 7531 5.189928 ACTAATGTCATCGCAAAATGGGTA 58.810 37.500 0.00 0.00 0.00 3.69
5351 7532 4.370364 AATGTCATCGCAAAATGGGTAC 57.630 40.909 0.00 0.00 0.00 3.34
5352 7533 3.066291 TGTCATCGCAAAATGGGTACT 57.934 42.857 0.00 0.00 0.00 2.73
5353 7534 3.006940 TGTCATCGCAAAATGGGTACTC 58.993 45.455 0.00 0.00 0.00 2.59
5354 7535 2.030457 GTCATCGCAAAATGGGTACTCG 59.970 50.000 0.00 0.00 0.00 4.18
5355 7536 2.093921 TCATCGCAAAATGGGTACTCGA 60.094 45.455 0.00 0.00 0.00 4.04
5356 7537 2.684001 TCGCAAAATGGGTACTCGAT 57.316 45.000 0.00 0.00 0.00 3.59
5357 7538 2.546778 TCGCAAAATGGGTACTCGATC 58.453 47.619 0.00 0.00 0.00 3.69
5358 7539 2.093921 TCGCAAAATGGGTACTCGATCA 60.094 45.455 0.00 0.00 0.00 2.92
5359 7540 2.872245 CGCAAAATGGGTACTCGATCAT 59.128 45.455 0.00 0.00 0.00 2.45
5360 7541 4.055360 CGCAAAATGGGTACTCGATCATA 58.945 43.478 0.00 0.00 0.00 2.15
5361 7542 4.509970 CGCAAAATGGGTACTCGATCATAA 59.490 41.667 0.00 0.00 0.00 1.90
5362 7543 5.333339 CGCAAAATGGGTACTCGATCATAAG 60.333 44.000 0.00 0.00 0.00 1.73
5363 7544 5.527582 GCAAAATGGGTACTCGATCATAAGT 59.472 40.000 0.00 0.00 0.00 2.24
5364 7545 6.704493 GCAAAATGGGTACTCGATCATAAGTA 59.296 38.462 0.00 0.00 0.00 2.24
5378 7559 3.382227 TCATAAGTAAACGCTCATCCGGA 59.618 43.478 6.61 6.61 0.00 5.14
5379 7560 2.005971 AAGTAAACGCTCATCCGGAC 57.994 50.000 6.12 0.00 0.00 4.79
5380 7561 0.892755 AGTAAACGCTCATCCGGACA 59.107 50.000 6.12 0.00 0.00 4.02
5381 7562 1.274167 AGTAAACGCTCATCCGGACAA 59.726 47.619 6.12 0.00 0.00 3.18
5382 7563 1.659098 GTAAACGCTCATCCGGACAAG 59.341 52.381 6.12 8.63 0.00 3.16
5386 7567 2.367202 GCTCATCCGGACAAGGGGA 61.367 63.158 6.12 0.00 36.61 4.81
5387 7568 1.826024 CTCATCCGGACAAGGGGAG 59.174 63.158 6.12 3.44 35.40 4.30
5389 7570 1.995626 CATCCGGACAAGGGGAGGT 60.996 63.158 6.12 0.00 35.40 3.85
5390 7571 0.689745 CATCCGGACAAGGGGAGGTA 60.690 60.000 6.12 0.00 35.40 3.08
5391 7572 0.398664 ATCCGGACAAGGGGAGGTAG 60.399 60.000 6.12 0.00 35.40 3.18
5419 7601 3.390311 ACTACCTCCATCCGGGTTTATTC 59.610 47.826 0.00 0.00 37.07 1.75
5422 7604 2.480845 CTCCATCCGGGTTTATTCGTC 58.519 52.381 0.00 0.00 38.11 4.20
5423 7605 1.202440 TCCATCCGGGTTTATTCGTCG 60.202 52.381 0.00 0.00 38.11 5.12
5438 7621 7.769719 TTATTCGTCGTCTTTGTTTTTATGC 57.230 32.000 0.00 0.00 0.00 3.14
5439 7622 4.136517 TCGTCGTCTTTGTTTTTATGCC 57.863 40.909 0.00 0.00 0.00 4.40
5441 7624 4.214545 TCGTCGTCTTTGTTTTTATGCCAT 59.785 37.500 0.00 0.00 0.00 4.40
5444 7627 7.278203 TCGTCGTCTTTGTTTTTATGCCATATA 59.722 33.333 0.00 0.00 0.00 0.86
5448 7631 9.729023 CGTCTTTGTTTTTATGCCATATATTGA 57.271 29.630 0.00 0.00 0.00 2.57
5460 7643 7.984422 TGCCATATATTGACTGTAGATTTGG 57.016 36.000 0.00 0.00 0.00 3.28
5463 7646 7.361542 GCCATATATTGACTGTAGATTTGGCTG 60.362 40.741 10.48 0.00 41.10 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.776810 TGATGGGAGGAGCAAAACCA 59.223 50.000 0.00 0.00 35.39 3.67
27 28 1.492176 GGATCTTGATGGGAGGAGCAA 59.508 52.381 0.00 0.00 0.00 3.91
49 50 1.209019 GCCTCATCCATCACTCACACT 59.791 52.381 0.00 0.00 0.00 3.55
57 58 3.937778 TTTGATCTGCCTCATCCATCA 57.062 42.857 0.00 0.00 0.00 3.07
115 116 9.976511 CTTCAGAATATGTTGGCATGAATTATT 57.023 29.630 0.00 0.00 36.58 1.40
135 136 7.671302 ACTTGAAGCATAGTTAGTTCTTCAGA 58.329 34.615 0.00 0.00 42.46 3.27
136 137 7.897575 ACTTGAAGCATAGTTAGTTCTTCAG 57.102 36.000 0.00 0.00 42.46 3.02
259 265 9.878667 TCAATGTGACCTCGAATTACTAAAATA 57.121 29.630 0.00 0.00 0.00 1.40
268 274 3.261897 AGGACTCAATGTGACCTCGAATT 59.738 43.478 0.77 0.00 0.00 2.17
300 306 5.375956 ACCCTCATCCCTTCTAGTAGTATCA 59.624 44.000 0.00 0.00 0.00 2.15
323 332 0.778815 CAAAGAGCTCGTCGTCACAC 59.221 55.000 8.37 0.00 0.00 3.82
437 446 1.534729 GCTCCGGATGAAAGTGGTTT 58.465 50.000 3.57 0.00 0.00 3.27
465 474 9.744468 GTTTTGAAACAAACACCTATATGAGTT 57.256 29.630 1.90 0.00 38.74 3.01
476 487 9.536558 GAACAAATAAGGTTTTGAAACAAACAC 57.463 29.630 8.68 0.00 40.63 3.32
485 496 4.022676 GGCTCGGAACAAATAAGGTTTTGA 60.023 41.667 4.10 0.00 38.58 2.69
494 507 2.039216 TGTTGGAGGCTCGGAACAAATA 59.961 45.455 21.71 6.74 0.00 1.40
503 516 0.036010 AGTGGAATGTTGGAGGCTCG 60.036 55.000 8.69 0.00 0.00 5.03
645 663 6.290294 AGTACCGTTTCATAGCTTCCTTTA 57.710 37.500 0.00 0.00 0.00 1.85
646 664 5.161943 AGTACCGTTTCATAGCTTCCTTT 57.838 39.130 0.00 0.00 0.00 3.11
741 764 7.045126 AGTCATCTAGGAGTACATAAGTTGC 57.955 40.000 0.00 0.00 0.00 4.17
742 765 9.522804 GAAAGTCATCTAGGAGTACATAAGTTG 57.477 37.037 0.00 0.00 0.00 3.16
744 767 8.824756 TGAAAGTCATCTAGGAGTACATAAGT 57.175 34.615 0.00 0.00 0.00 2.24
767 790 7.338196 TGCTTCGGGTCAAGAAAATTAATATGA 59.662 33.333 0.00 0.00 0.00 2.15
768 791 7.479980 TGCTTCGGGTCAAGAAAATTAATATG 58.520 34.615 0.00 0.00 0.00 1.78
769 792 7.639113 TGCTTCGGGTCAAGAAAATTAATAT 57.361 32.000 0.00 0.00 0.00 1.28
770 793 7.639113 ATGCTTCGGGTCAAGAAAATTAATA 57.361 32.000 0.00 0.00 0.00 0.98
771 794 5.975693 TGCTTCGGGTCAAGAAAATTAAT 57.024 34.783 0.00 0.00 0.00 1.40
772 795 5.975693 ATGCTTCGGGTCAAGAAAATTAA 57.024 34.783 0.00 0.00 0.00 1.40
774 797 4.524328 AGAATGCTTCGGGTCAAGAAAATT 59.476 37.500 0.00 0.00 34.02 1.82
776 799 3.486383 AGAATGCTTCGGGTCAAGAAAA 58.514 40.909 0.00 0.00 34.02 2.29
777 800 3.140325 AGAATGCTTCGGGTCAAGAAA 57.860 42.857 0.00 0.00 34.02 2.52
778 801 2.859165 AGAATGCTTCGGGTCAAGAA 57.141 45.000 0.00 0.00 34.02 2.52
779 802 4.081142 TCAATAGAATGCTTCGGGTCAAGA 60.081 41.667 0.00 0.00 34.02 3.02
780 803 4.034510 GTCAATAGAATGCTTCGGGTCAAG 59.965 45.833 0.00 0.00 34.02 3.02
781 804 3.938963 GTCAATAGAATGCTTCGGGTCAA 59.061 43.478 0.00 0.00 34.02 3.18
782 805 3.531538 GTCAATAGAATGCTTCGGGTCA 58.468 45.455 0.00 0.00 34.02 4.02
783 806 2.872858 GGTCAATAGAATGCTTCGGGTC 59.127 50.000 0.00 0.00 34.02 4.46
784 807 2.505819 AGGTCAATAGAATGCTTCGGGT 59.494 45.455 0.00 0.00 34.02 5.28
785 808 2.874701 CAGGTCAATAGAATGCTTCGGG 59.125 50.000 0.00 0.00 34.02 5.14
786 809 3.797039 TCAGGTCAATAGAATGCTTCGG 58.203 45.455 0.00 0.00 34.02 4.30
787 810 4.260538 GCTTCAGGTCAATAGAATGCTTCG 60.261 45.833 0.00 0.00 34.02 3.79
788 811 4.637534 TGCTTCAGGTCAATAGAATGCTTC 59.362 41.667 0.00 0.00 0.00 3.86
789 812 4.592942 TGCTTCAGGTCAATAGAATGCTT 58.407 39.130 0.00 0.00 0.00 3.91
790 813 4.226427 TGCTTCAGGTCAATAGAATGCT 57.774 40.909 0.00 0.00 0.00 3.79
791 814 4.261489 CCATGCTTCAGGTCAATAGAATGC 60.261 45.833 0.00 0.00 0.00 3.56
792 815 4.261489 GCCATGCTTCAGGTCAATAGAATG 60.261 45.833 0.00 0.00 0.00 2.67
798 821 1.033746 CGGCCATGCTTCAGGTCAAT 61.034 55.000 2.24 0.00 0.00 2.57
821 844 2.024414 GGTACCATGTTGCTCATTCCC 58.976 52.381 7.15 0.00 34.09 3.97
832 855 2.082140 TGATAGGCTCGGTACCATGT 57.918 50.000 13.54 0.00 0.00 3.21
834 857 2.769663 TGTTTGATAGGCTCGGTACCAT 59.230 45.455 13.54 0.00 0.00 3.55
835 858 2.093869 GTGTTTGATAGGCTCGGTACCA 60.094 50.000 13.54 0.00 0.00 3.25
847 888 1.004277 GGGCCAGGTGAGTGTTTGATA 59.996 52.381 4.39 0.00 0.00 2.15
849 890 1.150536 GGGCCAGGTGAGTGTTTGA 59.849 57.895 4.39 0.00 0.00 2.69
904 952 3.203040 GGAGGGGATTTTGAATGGAGAGA 59.797 47.826 0.00 0.00 0.00 3.10
906 954 2.244769 GGGAGGGGATTTTGAATGGAGA 59.755 50.000 0.00 0.00 0.00 3.71
907 955 2.670939 GGGAGGGGATTTTGAATGGAG 58.329 52.381 0.00 0.00 0.00 3.86
908 956 1.064017 CGGGAGGGGATTTTGAATGGA 60.064 52.381 0.00 0.00 0.00 3.41
955 1007 3.116707 AGGGAGAGAAAGGGGATCGATTA 60.117 47.826 0.00 0.00 0.00 1.75
969 1021 2.003830 TGGAGAAAGGAGAGGGAGAGA 58.996 52.381 0.00 0.00 0.00 3.10
970 1022 2.387757 CTGGAGAAAGGAGAGGGAGAG 58.612 57.143 0.00 0.00 0.00 3.20
1115 1167 2.186903 CGTCCCGGTTCCTGGATG 59.813 66.667 0.00 6.25 32.20 3.51
1148 1200 0.600057 GGCCTGCTTCTTGAACTTGG 59.400 55.000 0.00 0.00 0.00 3.61
1284 1336 0.930310 CGTCGAGCACAATATGGTGG 59.070 55.000 12.26 0.00 39.82 4.61
1289 1341 0.595053 CGCCTCGTCGAGCACAATAT 60.595 55.000 17.02 0.00 0.00 1.28
1325 1377 1.888512 TGCAACCAGGAAGAGATTTGC 59.111 47.619 0.00 0.00 39.80 3.68
1337 1389 0.811616 GAGCCGGTATCTGCAACCAG 60.812 60.000 1.90 0.00 40.54 4.00
1350 1402 4.195334 CCCCCAGATTGGAGCCGG 62.195 72.222 0.00 0.00 40.96 6.13
1351 1403 4.883354 GCCCCCAGATTGGAGCCG 62.883 72.222 0.00 0.00 40.96 5.52
1356 1408 4.820744 CCCGTGCCCCCAGATTGG 62.821 72.222 0.00 0.00 37.25 3.16
1358 1410 2.696125 ATCCCGTGCCCCCAGATT 60.696 61.111 0.00 0.00 0.00 2.40
1361 1413 2.675242 TAACATCCCGTGCCCCCAG 61.675 63.158 0.00 0.00 0.00 4.45
1369 1421 2.674357 GCACATAAACGTAACATCCCGT 59.326 45.455 0.00 0.00 39.32 5.28
1380 1432 4.935808 AGGAGGAAACTAAGCACATAAACG 59.064 41.667 0.00 0.00 44.43 3.60
1382 1434 6.374417 AGAGGAGGAAACTAAGCACATAAA 57.626 37.500 0.00 0.00 44.43 1.40
1383 1435 6.213600 AGAAGAGGAGGAAACTAAGCACATAA 59.786 38.462 0.00 0.00 44.43 1.90
1384 1436 5.721960 AGAAGAGGAGGAAACTAAGCACATA 59.278 40.000 0.00 0.00 44.43 2.29
1388 1440 3.307059 GCAGAAGAGGAGGAAACTAAGCA 60.307 47.826 0.00 0.00 44.43 3.91
1398 1450 1.457346 AAAATGCGCAGAAGAGGAGG 58.543 50.000 18.32 0.00 0.00 4.30
1445 1497 8.834749 AACTAGTGGAGAAAGATCTAAACAAC 57.165 34.615 0.00 0.00 35.54 3.32
1462 1514 6.894339 AATTGGGTTTTGTCTAACTAGTGG 57.106 37.500 0.00 0.00 0.00 4.00
1749 1819 1.131883 GCAGTCCAGTTAGCAAGCATG 59.868 52.381 0.00 0.00 0.00 4.06
1832 1902 3.565482 GCTATGCCATTGAAAGATCCGAA 59.435 43.478 0.00 0.00 0.00 4.30
1872 1942 4.532834 TCCTGCAACAGAAGGTAAAACTT 58.467 39.130 0.00 0.00 34.94 2.66
1874 1944 4.911514 TTCCTGCAACAGAAGGTAAAAC 57.088 40.909 0.00 0.00 34.94 2.43
1875 1945 5.452078 CATTCCTGCAACAGAAGGTAAAA 57.548 39.130 0.00 0.00 34.94 1.52
1985 2060 1.490490 TGGTGACTTTGCTTCTCCACT 59.510 47.619 0.00 0.00 32.84 4.00
2324 2405 2.418368 TGTGCTCCTTGTGAGTTTGT 57.582 45.000 0.00 0.00 43.48 2.83
2334 2415 4.401022 TGACAATCAGATTTGTGCTCCTT 58.599 39.130 0.00 0.00 39.85 3.36
2452 2533 4.009675 GCATTCCTTGGTGTTCATCAGTA 58.990 43.478 0.00 0.00 0.00 2.74
2489 2570 3.805207 CTGTACCCCTTCTTTAATCCCG 58.195 50.000 0.00 0.00 0.00 5.14
2516 2597 0.443869 ATTCATCTGACGCGCAACAC 59.556 50.000 5.73 0.00 0.00 3.32
2522 2603 0.926155 CTGTCCATTCATCTGACGCG 59.074 55.000 3.53 3.53 0.00 6.01
2637 2718 7.922505 TCAAACCACTAAATGAACAAAATCG 57.077 32.000 0.00 0.00 0.00 3.34
2663 2744 5.698545 GGTCTGCAACTACCAAGATATGATC 59.301 44.000 7.49 0.00 35.73 2.92
2664 2745 5.367937 AGGTCTGCAACTACCAAGATATGAT 59.632 40.000 13.39 0.00 38.30 2.45
2665 2746 4.716784 AGGTCTGCAACTACCAAGATATGA 59.283 41.667 13.39 0.00 38.30 2.15
2666 2747 4.813161 CAGGTCTGCAACTACCAAGATATG 59.187 45.833 13.39 0.77 38.30 1.78
2667 2748 4.471386 ACAGGTCTGCAACTACCAAGATAT 59.529 41.667 13.39 0.00 38.30 1.63
2672 2753 2.948979 CAAACAGGTCTGCAACTACCAA 59.051 45.455 13.39 0.00 38.30 3.67
2674 2755 2.846193 TCAAACAGGTCTGCAACTACC 58.154 47.619 4.71 4.71 35.91 3.18
2686 2768 6.676456 GCTTGTGCAACTAGATATCAAACAGG 60.676 42.308 5.32 0.97 42.45 4.00
2706 2788 0.957362 GCTTTCTCAAGGCAGCTTGT 59.043 50.000 0.00 0.00 35.91 3.16
2738 2820 8.928733 CAACATTTTAACTGCAGCATTCTAATT 58.071 29.630 15.27 0.00 0.00 1.40
2741 2823 5.863397 GCAACATTTTAACTGCAGCATTCTA 59.137 36.000 15.27 0.00 34.87 2.10
2751 2833 6.805271 CCATTCTGAGAGCAACATTTTAACTG 59.195 38.462 0.00 0.00 0.00 3.16
2752 2834 6.071728 CCCATTCTGAGAGCAACATTTTAACT 60.072 38.462 0.00 0.00 0.00 2.24
2753 2835 6.095377 CCCATTCTGAGAGCAACATTTTAAC 58.905 40.000 0.00 0.00 0.00 2.01
2754 2836 5.185635 CCCCATTCTGAGAGCAACATTTTAA 59.814 40.000 0.00 0.00 0.00 1.52
2755 2837 4.706476 CCCCATTCTGAGAGCAACATTTTA 59.294 41.667 0.00 0.00 0.00 1.52
2756 2838 3.512724 CCCCATTCTGAGAGCAACATTTT 59.487 43.478 0.00 0.00 0.00 1.82
2757 2839 3.094572 CCCCATTCTGAGAGCAACATTT 58.905 45.455 0.00 0.00 0.00 2.32
2758 2840 2.042162 ACCCCATTCTGAGAGCAACATT 59.958 45.455 0.00 0.00 0.00 2.71
2759 2841 1.637553 ACCCCATTCTGAGAGCAACAT 59.362 47.619 0.00 0.00 0.00 2.71
2760 2842 1.067295 ACCCCATTCTGAGAGCAACA 58.933 50.000 0.00 0.00 0.00 3.33
2761 2843 2.206576 AACCCCATTCTGAGAGCAAC 57.793 50.000 0.00 0.00 0.00 4.17
2762 2844 2.555227 GGAAACCCCATTCTGAGAGCAA 60.555 50.000 0.00 0.00 34.14 3.91
2763 2845 1.004745 GGAAACCCCATTCTGAGAGCA 59.995 52.381 0.00 0.00 34.14 4.26
2764 2846 1.004745 TGGAAACCCCATTCTGAGAGC 59.995 52.381 0.00 0.00 40.82 4.09
2765 2847 2.307098 ACTGGAAACCCCATTCTGAGAG 59.693 50.000 0.00 0.00 45.57 3.20
2766 2848 2.348472 ACTGGAAACCCCATTCTGAGA 58.652 47.619 0.00 0.00 45.57 3.27
2767 2849 2.887151 ACTGGAAACCCCATTCTGAG 57.113 50.000 0.00 0.00 45.57 3.35
2768 2850 3.611025 AAACTGGAAACCCCATTCTGA 57.389 42.857 0.00 0.00 45.57 3.27
2769 2851 5.799827 TTAAAACTGGAAACCCCATTCTG 57.200 39.130 0.00 0.00 45.57 3.02
2770 2852 6.816616 TTTTAAAACTGGAAACCCCATTCT 57.183 33.333 0.00 0.00 45.57 2.40
2798 2880 5.584442 TGAATAACTCATGCACATTCATGC 58.416 37.500 0.00 0.00 46.32 4.06
2811 2893 4.883585 GCACCAAGATCCATGAATAACTCA 59.116 41.667 0.00 0.00 38.81 3.41
2814 2896 6.203723 GTCTAGCACCAAGATCCATGAATAAC 59.796 42.308 0.00 0.00 0.00 1.89
2825 2907 4.623932 TCACAAAGTCTAGCACCAAGAT 57.376 40.909 0.00 0.00 0.00 2.40
2826 2908 4.623932 ATCACAAAGTCTAGCACCAAGA 57.376 40.909 0.00 0.00 0.00 3.02
2831 2913 6.036517 CAGTGGAATATCACAAAGTCTAGCAC 59.963 42.308 0.00 0.00 39.93 4.40
2841 2923 5.981088 AACAATGCAGTGGAATATCACAA 57.019 34.783 19.57 0.00 39.93 3.33
2842 2924 5.981088 AAACAATGCAGTGGAATATCACA 57.019 34.783 19.57 0.00 39.93 3.58
2843 2925 6.158598 ACAAAACAATGCAGTGGAATATCAC 58.841 36.000 19.57 0.00 37.89 3.06
2866 2948 5.891451 ACTGCTTAACAAAAGGAACTCAAC 58.109 37.500 0.00 0.00 38.49 3.18
2902 2984 7.751768 TGTTGGACATTCAATGTTGTATACA 57.248 32.000 4.04 0.08 45.03 2.29
2906 2988 6.456795 TGTTGTTGGACATTCAATGTTGTA 57.543 33.333 4.04 0.00 45.03 2.41
2907 2989 5.336150 TGTTGTTGGACATTCAATGTTGT 57.664 34.783 4.04 0.00 45.03 3.32
2913 2995 5.139435 TGTTGTTGTTGTTGGACATTCAA 57.861 34.783 0.00 0.00 0.00 2.69
2915 2997 7.276658 TGTTATTGTTGTTGTTGTTGGACATTC 59.723 33.333 0.00 0.00 0.00 2.67
2937 3037 3.634910 GGGACTGAAAGGCTTTGTTGTTA 59.365 43.478 18.79 0.00 46.21 2.41
2971 3075 6.188407 TCAGTATGTTCAACTCTAGCCTACT 58.812 40.000 0.00 0.00 37.40 2.57
2976 3080 7.171678 AGTGTTTTCAGTATGTTCAACTCTAGC 59.828 37.037 0.00 0.00 37.40 3.42
2991 3095 4.762289 AGACTCTGGAAGTGTTTTCAGT 57.238 40.909 0.00 0.00 41.37 3.41
2992 3096 6.284459 AGTTAGACTCTGGAAGTGTTTTCAG 58.716 40.000 0.00 0.00 41.37 3.02
2999 3103 6.085555 TGTTGTAGTTAGACTCTGGAAGTG 57.914 41.667 0.00 0.00 38.74 3.16
3011 3115 7.968956 CAGACACTACTGGTATGTTGTAGTTAG 59.031 40.741 0.00 0.00 42.65 2.34
3012 3116 7.666804 TCAGACACTACTGGTATGTTGTAGTTA 59.333 37.037 0.00 0.00 42.65 2.24
3013 3117 6.492429 TCAGACACTACTGGTATGTTGTAGTT 59.508 38.462 0.00 0.00 42.65 2.24
3014 3118 6.008331 TCAGACACTACTGGTATGTTGTAGT 58.992 40.000 0.00 0.00 45.08 2.73
3015 3119 6.510879 TCAGACACTACTGGTATGTTGTAG 57.489 41.667 0.00 0.00 39.43 2.74
3016 3120 6.904463 TTCAGACACTACTGGTATGTTGTA 57.096 37.500 0.00 0.00 38.31 2.41
3017 3121 5.801531 TTCAGACACTACTGGTATGTTGT 57.198 39.130 0.00 0.00 38.31 3.32
3051 3155 8.534954 ACAACTATCCTACTGCTACTATTTGA 57.465 34.615 0.00 0.00 0.00 2.69
3082 3225 3.945285 GGAAGAACACAGAAGTCCAACAA 59.055 43.478 0.00 0.00 0.00 2.83
3085 3228 3.924114 TGGAAGAACACAGAAGTCCAA 57.076 42.857 0.00 0.00 32.31 3.53
3092 3235 3.960102 AGCCAAAAATGGAAGAACACAGA 59.040 39.130 0.00 0.00 0.00 3.41
3097 3240 6.925610 AAAGAAAGCCAAAAATGGAAGAAC 57.074 33.333 0.00 0.00 0.00 3.01
3103 3246 4.023792 GGCAGAAAAGAAAGCCAAAAATGG 60.024 41.667 0.00 0.00 46.26 3.16
3126 3269 4.970003 CGAACTTACAGCCTTCAAACAAAG 59.030 41.667 0.00 0.00 0.00 2.77
3134 3277 2.067013 GACACCGAACTTACAGCCTTC 58.933 52.381 0.00 0.00 0.00 3.46
3135 3278 1.414919 TGACACCGAACTTACAGCCTT 59.585 47.619 0.00 0.00 0.00 4.35
3142 3285 4.647611 ACATCCAAATGACACCGAACTTA 58.352 39.130 0.00 0.00 36.67 2.24
3148 3291 4.503741 AGAAAACATCCAAATGACACCG 57.496 40.909 0.00 0.00 36.67 4.94
3191 3334 3.513680 TTTCTCAGATACGCGCCTAAA 57.486 42.857 5.73 0.00 0.00 1.85
3197 3340 6.742718 ACAATTTTTCATTTCTCAGATACGCG 59.257 34.615 3.53 3.53 0.00 6.01
3204 3347 7.691463 CGCTCTCTACAATTTTTCATTTCTCAG 59.309 37.037 0.00 0.00 0.00 3.35
3212 3355 7.132213 CAGAAAACGCTCTCTACAATTTTTCA 58.868 34.615 0.00 0.00 35.09 2.69
3246 3389 6.120220 ACCCTTGTAAATATTACCAGCTGTC 58.880 40.000 13.81 0.00 0.00 3.51
3248 3391 6.183360 CCAACCCTTGTAAATATTACCAGCTG 60.183 42.308 6.78 6.78 0.00 4.24
3250 3393 5.655090 ACCAACCCTTGTAAATATTACCAGC 59.345 40.000 0.00 0.00 0.00 4.85
3286 3429 5.451908 ACAGCGTGAAATGTTATGTTTCAG 58.548 37.500 1.88 0.00 43.83 3.02
3374 3525 2.751259 GGATCACTCACATGTGCACATT 59.249 45.455 29.48 17.50 37.81 2.71
3375 3526 2.026542 AGGATCACTCACATGTGCACAT 60.027 45.455 26.61 26.61 37.81 3.21
3376 3527 1.348696 AGGATCACTCACATGTGCACA 59.651 47.619 24.08 24.08 37.81 4.57
3430 5476 8.517878 CATTAACAATCTTCTGATGACCAGTTT 58.482 33.333 10.26 0.00 43.38 2.66
3431 5477 7.667219 ACATTAACAATCTTCTGATGACCAGTT 59.333 33.333 0.00 4.49 43.38 3.16
3432 5478 7.170965 ACATTAACAATCTTCTGATGACCAGT 58.829 34.615 0.00 0.00 43.38 4.00
3433 5479 7.621428 ACATTAACAATCTTCTGATGACCAG 57.379 36.000 0.00 0.00 44.27 4.00
3435 5481 6.749118 GCAACATTAACAATCTTCTGATGACC 59.251 38.462 0.00 0.00 32.44 4.02
3436 5482 7.533426 AGCAACATTAACAATCTTCTGATGAC 58.467 34.615 0.00 0.00 32.44 3.06
3442 5488 9.890629 TGTATCTAGCAACATTAACAATCTTCT 57.109 29.630 0.00 0.00 0.00 2.85
3445 5491 9.890629 TCTTGTATCTAGCAACATTAACAATCT 57.109 29.630 0.00 0.00 0.00 2.40
3478 5524 7.904461 CCTGTGCTCAAAGTATTTTTGTTTTTG 59.096 33.333 0.22 0.00 35.03 2.44
3486 5532 6.463995 TTGAACCTGTGCTCAAAGTATTTT 57.536 33.333 0.00 0.00 35.03 1.82
3535 5675 3.891366 AGAGCAGCACCAAAATGTTAGTT 59.109 39.130 0.00 0.00 0.00 2.24
3536 5676 3.490348 AGAGCAGCACCAAAATGTTAGT 58.510 40.909 0.00 0.00 0.00 2.24
3539 5679 3.825143 AAAGAGCAGCACCAAAATGTT 57.175 38.095 0.00 0.00 0.00 2.71
3541 5681 4.874970 ACTAAAAGAGCAGCACCAAAATG 58.125 39.130 0.00 0.00 0.00 2.32
3594 5734 4.758688 TGACATGTGGTAAGCATCACTAG 58.241 43.478 1.15 0.00 35.15 2.57
3622 5762 2.755836 AAGCAACGTGACATGTTGTC 57.244 45.000 31.24 24.78 44.66 3.18
3623 5763 2.421775 TCAAAGCAACGTGACATGTTGT 59.578 40.909 31.24 19.94 44.66 3.32
3635 5775 9.463443 AAGTACAAAATAGATTGTCAAAGCAAC 57.537 29.630 0.00 0.00 42.33 4.17
3636 5776 9.677567 GAAGTACAAAATAGATTGTCAAAGCAA 57.322 29.630 0.00 0.00 42.33 3.91
3726 5866 9.809096 TGTCAAATTGCTGAACTAACAAAAATA 57.191 25.926 0.00 0.00 0.00 1.40
3768 5908 1.283029 TCTTCAGCAGATTTCCCTGGG 59.717 52.381 6.33 6.33 34.82 4.45
3774 5914 4.339439 GAAGCAGTCTTCAGCAGATTTC 57.661 45.455 0.59 0.00 46.14 2.17
3864 6004 4.890158 TGTGAAATGTGCTAGAGGAGAA 57.110 40.909 0.00 0.00 0.00 2.87
3912 6052 1.278127 CTTCCGGCTAGAGGTTCCAAA 59.722 52.381 0.00 0.00 0.00 3.28
3990 6130 4.018506 TGGTCAATGAGGGAATGCTTCTTA 60.019 41.667 0.00 0.00 0.00 2.10
4038 6178 4.712763 CAGACGGTGAAGTTTCAAATAGC 58.287 43.478 0.00 0.00 39.21 2.97
4039 6179 4.452455 AGCAGACGGTGAAGTTTCAAATAG 59.548 41.667 0.00 0.00 39.21 1.73
4047 6187 3.188159 TGTAAAGCAGACGGTGAAGTT 57.812 42.857 0.00 0.00 0.00 2.66
4056 6196 6.681777 AGGAATGTTCAATTGTAAAGCAGAC 58.318 36.000 5.13 0.00 0.00 3.51
4210 6350 3.931578 TCTTTAGAGGCTTCAGAACTGC 58.068 45.455 0.00 0.00 0.00 4.40
4215 6355 6.859112 ACAGTATTCTTTAGAGGCTTCAGA 57.141 37.500 0.00 0.00 0.00 3.27
4245 6385 7.103641 GGGTCAACTGATTAATGTACTTCTCA 58.896 38.462 0.00 0.00 0.00 3.27
4617 6757 3.119101 ACTGAGCGATAAAATCCGTGACT 60.119 43.478 0.00 0.00 0.00 3.41
4626 6766 6.394809 TGACAGAATACACTGAGCGATAAAA 58.605 36.000 0.00 0.00 40.63 1.52
4627 6767 5.961272 TGACAGAATACACTGAGCGATAAA 58.039 37.500 0.00 0.00 40.63 1.40
4641 6781 6.042777 CGTTGATAGCTTCCTTGACAGAATA 58.957 40.000 0.00 0.00 0.00 1.75
4655 6795 3.797039 TGCTAGAAATGCGTTGATAGCT 58.203 40.909 24.65 0.00 35.13 3.32
4657 6797 7.586714 TCATATGCTAGAAATGCGTTGATAG 57.413 36.000 0.00 0.00 0.00 2.08
4680 6820 8.421784 TGATACTAAGTGATAACCATGACCTTC 58.578 37.037 0.00 0.00 0.00 3.46
4701 6851 8.984764 TCACACAAAAGTTGTAGTATGTGATAC 58.015 33.333 10.34 0.00 43.23 2.24
4702 6852 9.549078 TTCACACAAAAGTTGTAGTATGTGATA 57.451 29.630 10.34 0.00 43.23 2.15
4703 6853 8.445275 TTCACACAAAAGTTGTAGTATGTGAT 57.555 30.769 10.34 0.00 43.23 3.06
4704 6854 7.851387 TTCACACAAAAGTTGTAGTATGTGA 57.149 32.000 10.34 3.00 43.23 3.58
4769 6919 4.415596 ACTGAATGTAAATGGGCCTGAAA 58.584 39.130 4.53 0.00 0.00 2.69
4834 6984 3.243002 GCTCTGAGAATTACCTTGCATGC 60.243 47.826 11.82 11.82 0.00 4.06
4954 7108 1.053835 TGAGGAACACCTGACCTGCA 61.054 55.000 0.00 0.00 33.73 4.41
4990 7144 9.693739 TGAAAAAGGACTATTTGAGGCAATATA 57.306 29.630 0.00 0.00 33.03 0.86
5002 7170 5.594317 AGCTGTTGTGTGAAAAAGGACTATT 59.406 36.000 0.00 0.00 0.00 1.73
5029 7197 2.472695 TGTATTTCTCTTGCACGCCT 57.527 45.000 0.00 0.00 0.00 5.52
5106 7277 5.278315 GCAAAACCTTCCTATGTTTCGAACT 60.278 40.000 0.00 0.00 33.76 3.01
5116 7287 6.987403 TTGGTAAAAGCAAAACCTTCCTAT 57.013 33.333 0.00 0.00 32.03 2.57
5152 7323 3.644966 ACCATTGTGGGATGTAATCGT 57.355 42.857 0.52 0.00 46.86 3.73
5170 7341 2.052782 ATTCGTGGCCTGGATTAACC 57.947 50.000 3.32 0.00 39.54 2.85
5171 7342 3.805207 ACTATTCGTGGCCTGGATTAAC 58.195 45.455 3.32 0.00 0.00 2.01
5172 7343 4.163458 AGAACTATTCGTGGCCTGGATTAA 59.837 41.667 3.32 0.00 34.02 1.40
5173 7344 3.709653 AGAACTATTCGTGGCCTGGATTA 59.290 43.478 3.32 1.45 34.02 1.75
5174 7345 2.505819 AGAACTATTCGTGGCCTGGATT 59.494 45.455 3.32 0.21 34.02 3.01
5175 7346 2.119495 AGAACTATTCGTGGCCTGGAT 58.881 47.619 3.32 0.00 34.02 3.41
5176 7347 1.568504 AGAACTATTCGTGGCCTGGA 58.431 50.000 3.32 0.00 34.02 3.86
5177 7348 3.458189 CTTAGAACTATTCGTGGCCTGG 58.542 50.000 3.32 0.00 34.02 4.45
5178 7349 3.458189 CCTTAGAACTATTCGTGGCCTG 58.542 50.000 3.32 0.00 34.02 4.85
5185 7356 7.058298 CATGATGATGCCTTAGAACTATTCG 57.942 40.000 0.00 0.00 34.02 3.34
5227 7398 7.851387 TTGTGTTGTGTAATTAGTTGACAGA 57.149 32.000 0.00 0.00 0.00 3.41
5231 7402 8.144155 TCGAATTGTGTTGTGTAATTAGTTGA 57.856 30.769 0.00 0.00 0.00 3.18
5289 7468 5.049167 TGCATGTTTTGTTAGCCTTTTCAG 58.951 37.500 0.00 0.00 0.00 3.02
5290 7469 5.016051 TGCATGTTTTGTTAGCCTTTTCA 57.984 34.783 0.00 0.00 0.00 2.69
5291 7470 7.170658 TGTTATGCATGTTTTGTTAGCCTTTTC 59.829 33.333 10.16 0.00 0.00 2.29
5296 7475 6.966435 ATTGTTATGCATGTTTTGTTAGCC 57.034 33.333 10.16 0.00 0.00 3.93
5316 7497 9.767684 TTGCGATGACATTAGTTTAGTTTATTG 57.232 29.630 0.00 0.00 0.00 1.90
5325 7506 5.047377 ACCCATTTTGCGATGACATTAGTTT 60.047 36.000 0.00 0.00 0.00 2.66
5335 7516 2.276201 TCGAGTACCCATTTTGCGATG 58.724 47.619 0.00 0.00 0.00 3.84
5336 7517 2.684001 TCGAGTACCCATTTTGCGAT 57.316 45.000 0.00 0.00 0.00 4.58
5348 7529 6.197276 TGAGCGTTTACTTATGATCGAGTAC 58.803 40.000 0.00 0.00 0.00 2.73
5349 7530 6.367686 TGAGCGTTTACTTATGATCGAGTA 57.632 37.500 0.00 0.76 0.00 2.59
5350 7531 5.244785 TGAGCGTTTACTTATGATCGAGT 57.755 39.130 0.00 2.41 0.00 4.18
5351 7532 5.343593 GGATGAGCGTTTACTTATGATCGAG 59.656 44.000 0.00 0.00 0.00 4.04
5352 7533 5.220381 GGATGAGCGTTTACTTATGATCGA 58.780 41.667 0.00 0.00 0.00 3.59
5353 7534 4.088638 CGGATGAGCGTTTACTTATGATCG 59.911 45.833 0.00 0.00 0.00 3.69
5354 7535 4.386049 CCGGATGAGCGTTTACTTATGATC 59.614 45.833 0.00 0.00 0.00 2.92
5355 7536 4.038763 TCCGGATGAGCGTTTACTTATGAT 59.961 41.667 0.00 0.00 0.00 2.45
5356 7537 3.382227 TCCGGATGAGCGTTTACTTATGA 59.618 43.478 0.00 0.00 0.00 2.15
5357 7538 3.489785 GTCCGGATGAGCGTTTACTTATG 59.510 47.826 7.81 0.00 0.00 1.90
5358 7539 3.131577 TGTCCGGATGAGCGTTTACTTAT 59.868 43.478 7.81 0.00 0.00 1.73
5359 7540 2.492881 TGTCCGGATGAGCGTTTACTTA 59.507 45.455 7.81 0.00 0.00 2.24
5360 7541 1.274167 TGTCCGGATGAGCGTTTACTT 59.726 47.619 7.81 0.00 0.00 2.24
5361 7542 0.892755 TGTCCGGATGAGCGTTTACT 59.107 50.000 7.81 0.00 0.00 2.24
5362 7543 1.659098 CTTGTCCGGATGAGCGTTTAC 59.341 52.381 7.81 0.00 0.00 2.01
5363 7544 1.404986 CCTTGTCCGGATGAGCGTTTA 60.405 52.381 7.81 0.00 0.00 2.01
5364 7545 0.673644 CCTTGTCCGGATGAGCGTTT 60.674 55.000 7.81 0.00 0.00 3.60
5378 7559 4.143406 AGTACTTTCTACCTCCCCTTGT 57.857 45.455 0.00 0.00 0.00 3.16
5379 7560 5.595257 GTAGTACTTTCTACCTCCCCTTG 57.405 47.826 0.00 0.00 35.57 3.61
5389 7570 4.467769 CCGGATGGAGGTAGTACTTTCTA 58.532 47.826 0.00 0.00 37.49 2.10
5390 7571 3.297736 CCGGATGGAGGTAGTACTTTCT 58.702 50.000 0.00 0.00 37.49 2.52
5391 7572 2.364647 CCCGGATGGAGGTAGTACTTTC 59.635 54.545 0.73 0.00 37.49 2.62
5402 7584 2.480845 GACGAATAAACCCGGATGGAG 58.519 52.381 0.73 0.00 37.49 3.86
5406 7588 1.753073 AGACGACGAATAAACCCGGAT 59.247 47.619 0.73 0.00 0.00 4.18
5419 7601 3.879427 TGGCATAAAAACAAAGACGACG 58.121 40.909 0.00 0.00 0.00 5.12
5422 7604 9.729023 TCAATATATGGCATAAAAACAAAGACG 57.271 29.630 11.86 0.00 0.00 4.18
5438 7621 7.879677 TCAGCCAAATCTACAGTCAATATATGG 59.120 37.037 0.00 0.00 0.00 2.74
5439 7622 8.837788 TCAGCCAAATCTACAGTCAATATATG 57.162 34.615 0.00 0.00 0.00 1.78
5444 7627 8.579850 TTTTATCAGCCAAATCTACAGTCAAT 57.420 30.769 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.