Multiple sequence alignment - TraesCS7A01G336700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G336700 chr7A 100.000 2648 0 0 1 2648 492783114 492780467 0.000000e+00 4891
1 TraesCS7A01G336700 chr7A 100.000 626 0 0 2858 3483 492780257 492779632 0.000000e+00 1157
2 TraesCS7A01G336700 chr7A 83.750 560 56 10 2932 3483 191278594 191279126 6.710000e-137 497
3 TraesCS7A01G336700 chr7A 83.610 421 37 20 247 640 492819667 492819252 1.980000e-97 366
4 TraesCS7A01G336700 chr7D 92.063 1726 78 26 965 2644 441982654 441980942 0.000000e+00 2374
5 TraesCS7A01G336700 chr7D 85.644 815 57 28 183 967 441983481 441982697 0.000000e+00 802
6 TraesCS7A01G336700 chr7D 85.583 652 43 19 2858 3482 441980908 441980281 1.360000e-178 636
7 TraesCS7A01G336700 chr7D 83.805 636 66 12 2858 3483 180829599 180828991 1.400000e-158 569
8 TraesCS7A01G336700 chr7D 89.529 191 19 1 1 190 32648277 32648087 1.250000e-59 241
9 TraesCS7A01G336700 chr7B 92.651 1660 79 22 1019 2644 458612812 458611162 0.000000e+00 2350
10 TraesCS7A01G336700 chr7B 85.472 826 54 28 183 966 458613736 458612935 0.000000e+00 800
11 TraesCS7A01G336700 chr7B 90.799 413 27 2 3082 3483 458610941 458610529 3.060000e-150 542
12 TraesCS7A01G336700 chr7B 81.176 595 73 16 2858 3446 66817834 66818395 3.190000e-120 442
13 TraesCS7A01G336700 chr7B 88.930 271 26 2 2858 3128 458611128 458610862 7.210000e-87 331
14 TraesCS7A01G336700 chrUn 87.034 563 64 2 2930 3483 22351646 22351084 8.210000e-176 627
15 TraesCS7A01G336700 chrUn 89.180 305 33 0 3095 3399 442312132 442312436 7.050000e-102 381
16 TraesCS7A01G336700 chrUn 89.950 199 18 2 2930 3128 442311999 442312195 4.460000e-64 255
17 TraesCS7A01G336700 chr3B 88.852 305 34 0 3095 3399 753795689 753795385 3.280000e-100 375
18 TraesCS7A01G336700 chr3B 90.452 199 17 2 2930 3128 753795822 753795626 9.590000e-66 261
19 TraesCS7A01G336700 chr1A 87.302 315 36 4 3065 3377 580490511 580490823 1.190000e-94 357
20 TraesCS7A01G336700 chr5D 91.005 189 17 0 1 189 519276208 519276020 4.460000e-64 255
21 TraesCS7A01G336700 chr6D 90.476 189 18 0 1 189 106034464 106034276 2.080000e-62 250
22 TraesCS7A01G336700 chr3D 89.947 189 19 0 1 189 8368110 8367922 9.660000e-61 244
23 TraesCS7A01G336700 chr2A 89.947 189 19 0 1 189 459017117 459017305 9.660000e-61 244
24 TraesCS7A01G336700 chr1B 90.000 190 18 1 1 189 484457667 484457856 9.660000e-61 244
25 TraesCS7A01G336700 chr6B 88.500 200 21 2 1 199 513685347 513685149 1.250000e-59 241
26 TraesCS7A01G336700 chr5A 89.175 194 19 2 1 192 569789377 569789570 1.250000e-59 241
27 TraesCS7A01G336700 chr4D 89.175 194 20 1 1 193 226385063 226385256 1.250000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G336700 chr7A 492779632 492783114 3482 True 3024.000000 4891 100.000000 1 3483 2 chr7A.!!$R2 3482
1 TraesCS7A01G336700 chr7A 191278594 191279126 532 False 497.000000 497 83.750000 2932 3483 1 chr7A.!!$F1 551
2 TraesCS7A01G336700 chr7D 441980281 441983481 3200 True 1270.666667 2374 87.763333 183 3482 3 chr7D.!!$R3 3299
3 TraesCS7A01G336700 chr7D 180828991 180829599 608 True 569.000000 569 83.805000 2858 3483 1 chr7D.!!$R2 625
4 TraesCS7A01G336700 chr7B 458610529 458613736 3207 True 1005.750000 2350 89.463000 183 3483 4 chr7B.!!$R1 3300
5 TraesCS7A01G336700 chr7B 66817834 66818395 561 False 442.000000 442 81.176000 2858 3446 1 chr7B.!!$F1 588
6 TraesCS7A01G336700 chrUn 22351084 22351646 562 True 627.000000 627 87.034000 2930 3483 1 chrUn.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.034059 CGAGCACCAGGACTTGAACT 59.966 55.0 0.00 0.00 0.00 3.01 F
766 801 0.095935 CATAGATAAGCATGCGCGGC 59.904 55.0 13.01 15.21 45.49 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 1755 0.463474 GCTTCCTGGTGATGAGCCTC 60.463 60.0 0.00 0.00 0.00 4.70 R
2616 2771 0.318955 CGGAAAGCACAAAGGCCTTG 60.319 55.0 21.33 15.57 41.19 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.428562 GCATGTCATCTTAAAATTCACGAAG 57.571 36.000 0.00 0.00 0.00 3.79
26 27 7.217070 GCATGTCATCTTAAAATTCACGAAGTC 59.783 37.037 0.00 0.00 41.61 3.01
27 28 7.722795 TGTCATCTTAAAATTCACGAAGTCA 57.277 32.000 0.00 0.00 41.61 3.41
28 29 7.572759 TGTCATCTTAAAATTCACGAAGTCAC 58.427 34.615 0.00 0.00 41.61 3.67
29 30 7.441157 TGTCATCTTAAAATTCACGAAGTCACT 59.559 33.333 0.00 0.00 41.61 3.41
30 31 7.742089 GTCATCTTAAAATTCACGAAGTCACTG 59.258 37.037 0.00 0.00 41.61 3.66
31 32 7.441157 TCATCTTAAAATTCACGAAGTCACTGT 59.559 33.333 0.00 0.00 41.61 3.55
32 33 8.708742 CATCTTAAAATTCACGAAGTCACTGTA 58.291 33.333 0.00 0.00 41.61 2.74
33 34 8.294341 TCTTAAAATTCACGAAGTCACTGTAG 57.706 34.615 0.00 0.00 41.61 2.74
34 35 5.924475 AAAATTCACGAAGTCACTGTAGG 57.076 39.130 0.00 0.00 41.61 3.18
35 36 2.433868 TTCACGAAGTCACTGTAGGC 57.566 50.000 0.00 0.00 41.61 3.93
36 37 0.240145 TCACGAAGTCACTGTAGGCG 59.760 55.000 0.00 0.00 41.61 5.52
37 38 1.080705 ACGAAGTCACTGTAGGCGC 60.081 57.895 0.00 0.00 29.74 6.53
38 39 1.805945 CGAAGTCACTGTAGGCGCC 60.806 63.158 21.89 21.89 0.00 6.53
39 40 1.592223 GAAGTCACTGTAGGCGCCT 59.408 57.895 34.85 34.85 0.00 5.52
40 41 0.037232 GAAGTCACTGTAGGCGCCTT 60.037 55.000 37.74 19.11 0.00 4.35
41 42 0.320771 AAGTCACTGTAGGCGCCTTG 60.321 55.000 37.74 26.69 0.00 3.61
42 43 1.004918 GTCACTGTAGGCGCCTTGT 60.005 57.895 37.74 26.64 0.00 3.16
43 44 1.014564 GTCACTGTAGGCGCCTTGTC 61.015 60.000 37.74 24.45 0.00 3.18
44 45 2.094659 CACTGTAGGCGCCTTGTCG 61.095 63.158 37.74 22.14 0.00 4.35
45 46 2.261671 CTGTAGGCGCCTTGTCGT 59.738 61.111 37.74 12.35 0.00 4.34
46 47 1.374252 CTGTAGGCGCCTTGTCGTT 60.374 57.895 37.74 11.46 0.00 3.85
47 48 1.352156 CTGTAGGCGCCTTGTCGTTC 61.352 60.000 37.74 16.01 0.00 3.95
48 49 1.373748 GTAGGCGCCTTGTCGTTCA 60.374 57.895 37.74 11.48 0.00 3.18
49 50 1.373748 TAGGCGCCTTGTCGTTCAC 60.374 57.895 37.74 0.00 0.00 3.18
50 51 4.072088 GGCGCCTTGTCGTTCACG 62.072 66.667 22.15 0.00 41.45 4.35
51 52 4.072088 GCGCCTTGTCGTTCACGG 62.072 66.667 0.00 2.71 40.29 4.94
52 53 3.411351 CGCCTTGTCGTTCACGGG 61.411 66.667 0.00 0.00 40.29 5.28
53 54 2.029964 GCCTTGTCGTTCACGGGA 59.970 61.111 0.00 0.00 40.29 5.14
54 55 1.595929 GCCTTGTCGTTCACGGGAA 60.596 57.895 0.00 0.00 40.29 3.97
67 68 4.990288 GGGAACGTCACCTCTCAC 57.010 61.111 10.73 0.00 0.00 3.51
68 69 2.352817 GGGAACGTCACCTCTCACT 58.647 57.895 10.73 0.00 0.00 3.41
69 70 0.038159 GGGAACGTCACCTCTCACTG 60.038 60.000 10.73 0.00 0.00 3.66
70 71 0.959553 GGAACGTCACCTCTCACTGA 59.040 55.000 0.00 0.00 0.00 3.41
71 72 1.340248 GGAACGTCACCTCTCACTGAA 59.660 52.381 0.00 0.00 0.00 3.02
72 73 2.223971 GGAACGTCACCTCTCACTGAAA 60.224 50.000 0.00 0.00 0.00 2.69
73 74 2.802787 ACGTCACCTCTCACTGAAAG 57.197 50.000 0.00 0.00 42.29 2.62
74 75 1.269831 ACGTCACCTCTCACTGAAAGC 60.270 52.381 0.00 0.00 37.60 3.51
75 76 1.269778 CGTCACCTCTCACTGAAAGCA 60.270 52.381 0.00 0.00 37.60 3.91
76 77 2.139118 GTCACCTCTCACTGAAAGCAC 58.861 52.381 0.00 0.00 37.60 4.40
77 78 1.762370 TCACCTCTCACTGAAAGCACA 59.238 47.619 0.00 0.00 37.60 4.57
78 79 2.369860 TCACCTCTCACTGAAAGCACAT 59.630 45.455 0.00 0.00 37.60 3.21
79 80 2.740981 CACCTCTCACTGAAAGCACATC 59.259 50.000 0.00 0.00 37.60 3.06
80 81 1.998315 CCTCTCACTGAAAGCACATCG 59.002 52.381 0.00 0.00 37.60 3.84
81 82 1.392853 CTCTCACTGAAAGCACATCGC 59.607 52.381 0.00 0.00 37.60 4.58
82 83 0.445436 CTCACTGAAAGCACATCGCC 59.555 55.000 0.00 0.00 44.04 5.54
83 84 1.133253 CACTGAAAGCACATCGCCG 59.867 57.895 0.00 0.00 44.04 6.46
84 85 2.034879 ACTGAAAGCACATCGCCGG 61.035 57.895 0.00 0.00 44.04 6.13
85 86 1.741401 CTGAAAGCACATCGCCGGA 60.741 57.895 5.05 0.00 44.04 5.14
86 87 1.298157 CTGAAAGCACATCGCCGGAA 61.298 55.000 5.05 0.00 44.04 4.30
87 88 0.886938 TGAAAGCACATCGCCGGAAA 60.887 50.000 5.05 0.00 44.04 3.13
88 89 0.451783 GAAAGCACATCGCCGGAAAT 59.548 50.000 5.05 0.00 44.04 2.17
89 90 0.451783 AAAGCACATCGCCGGAAATC 59.548 50.000 5.05 0.00 44.04 2.17
90 91 1.376609 AAGCACATCGCCGGAAATCC 61.377 55.000 5.05 0.00 44.04 3.01
91 92 1.819632 GCACATCGCCGGAAATCCT 60.820 57.895 5.05 0.00 32.94 3.24
92 93 2.016961 CACATCGCCGGAAATCCTG 58.983 57.895 5.05 0.00 0.00 3.86
93 94 0.461870 CACATCGCCGGAAATCCTGA 60.462 55.000 5.05 0.00 0.00 3.86
94 95 0.251916 ACATCGCCGGAAATCCTGAA 59.748 50.000 5.05 0.00 0.00 3.02
95 96 1.339631 ACATCGCCGGAAATCCTGAAA 60.340 47.619 5.05 0.00 0.00 2.69
96 97 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
97 98 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
98 99 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
99 100 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
100 101 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
101 102 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
102 103 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
103 104 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
104 105 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
105 106 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
115 116 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
116 117 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
117 118 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
118 119 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
119 120 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
120 121 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
121 122 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
122 123 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
123 124 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
124 125 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
125 126 1.599542 GAATAATGCGAGCACCAGGAC 59.400 52.381 0.00 0.00 0.00 3.85
126 127 0.833287 ATAATGCGAGCACCAGGACT 59.167 50.000 0.00 0.00 0.00 3.85
127 128 0.613260 TAATGCGAGCACCAGGACTT 59.387 50.000 0.00 0.00 0.00 3.01
128 129 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
129 130 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
130 131 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
131 132 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
132 133 0.034059 CGAGCACCAGGACTTGAACT 59.966 55.000 0.00 0.00 0.00 3.01
133 134 1.802069 GAGCACCAGGACTTGAACTC 58.198 55.000 0.00 0.00 0.00 3.01
134 135 1.346068 GAGCACCAGGACTTGAACTCT 59.654 52.381 0.00 0.00 0.00 3.24
135 136 1.071385 AGCACCAGGACTTGAACTCTG 59.929 52.381 0.00 0.00 0.00 3.35
138 139 2.175878 CCAGGACTTGAACTCTGGTG 57.824 55.000 0.00 0.00 41.21 4.17
139 140 1.271054 CCAGGACTTGAACTCTGGTGG 60.271 57.143 0.00 0.00 41.21 4.61
140 141 1.059913 AGGACTTGAACTCTGGTGGG 58.940 55.000 0.00 0.00 0.00 4.61
141 142 0.606673 GGACTTGAACTCTGGTGGGC 60.607 60.000 0.00 0.00 0.00 5.36
142 143 0.398318 GACTTGAACTCTGGTGGGCT 59.602 55.000 0.00 0.00 0.00 5.19
143 144 0.109342 ACTTGAACTCTGGTGGGCTG 59.891 55.000 0.00 0.00 0.00 4.85
144 145 0.607489 CTTGAACTCTGGTGGGCTGG 60.607 60.000 0.00 0.00 0.00 4.85
145 146 2.067932 TTGAACTCTGGTGGGCTGGG 62.068 60.000 0.00 0.00 0.00 4.45
146 147 3.260100 AACTCTGGTGGGCTGGGG 61.260 66.667 0.00 0.00 0.00 4.96
147 148 3.810687 AACTCTGGTGGGCTGGGGA 62.811 63.158 0.00 0.00 0.00 4.81
148 149 2.693864 CTCTGGTGGGCTGGGGAT 60.694 66.667 0.00 0.00 0.00 3.85
149 150 1.384502 CTCTGGTGGGCTGGGGATA 60.385 63.158 0.00 0.00 0.00 2.59
150 151 0.988145 CTCTGGTGGGCTGGGGATAA 60.988 60.000 0.00 0.00 0.00 1.75
151 152 1.227383 CTGGTGGGCTGGGGATAAC 59.773 63.158 0.00 0.00 0.00 1.89
152 153 1.542628 TGGTGGGCTGGGGATAACA 60.543 57.895 0.00 0.00 0.00 2.41
153 154 1.076995 GGTGGGCTGGGGATAACAC 60.077 63.158 0.00 0.00 0.00 3.32
154 155 1.688811 GTGGGCTGGGGATAACACA 59.311 57.895 0.00 0.00 0.00 3.72
155 156 0.394352 GTGGGCTGGGGATAACACAG 60.394 60.000 0.00 0.00 35.40 3.66
156 157 0.844661 TGGGCTGGGGATAACACAGT 60.845 55.000 0.00 0.00 34.79 3.55
157 158 0.331616 GGGCTGGGGATAACACAGTT 59.668 55.000 0.00 0.00 34.79 3.16
158 159 1.682087 GGGCTGGGGATAACACAGTTC 60.682 57.143 0.00 0.00 34.79 3.01
159 160 1.682087 GGCTGGGGATAACACAGTTCC 60.682 57.143 0.00 0.00 34.79 3.62
160 161 1.282157 GCTGGGGATAACACAGTTCCT 59.718 52.381 0.00 0.00 34.79 3.36
161 162 2.681097 GCTGGGGATAACACAGTTCCTC 60.681 54.545 0.00 0.00 34.79 3.71
162 163 2.840651 CTGGGGATAACACAGTTCCTCT 59.159 50.000 0.00 0.00 30.88 3.69
163 164 4.030913 CTGGGGATAACACAGTTCCTCTA 58.969 47.826 0.00 0.00 30.88 2.43
164 165 4.431378 TGGGGATAACACAGTTCCTCTAA 58.569 43.478 0.00 0.00 30.88 2.10
165 166 4.224370 TGGGGATAACACAGTTCCTCTAAC 59.776 45.833 0.00 0.00 38.46 2.34
166 167 4.383880 GGGGATAACACAGTTCCTCTAACC 60.384 50.000 0.00 0.00 39.03 2.85
167 168 4.224370 GGGATAACACAGTTCCTCTAACCA 59.776 45.833 0.00 0.00 39.03 3.67
168 169 5.104485 GGGATAACACAGTTCCTCTAACCAT 60.104 44.000 0.00 0.00 39.03 3.55
169 170 6.049790 GGATAACACAGTTCCTCTAACCATC 58.950 44.000 0.00 0.00 39.03 3.51
170 171 3.983044 ACACAGTTCCTCTAACCATCC 57.017 47.619 0.00 0.00 39.03 3.51
171 172 3.248024 ACACAGTTCCTCTAACCATCCA 58.752 45.455 0.00 0.00 39.03 3.41
172 173 3.650942 ACACAGTTCCTCTAACCATCCAA 59.349 43.478 0.00 0.00 39.03 3.53
173 174 4.289672 ACACAGTTCCTCTAACCATCCAAT 59.710 41.667 0.00 0.00 39.03 3.16
174 175 4.878397 CACAGTTCCTCTAACCATCCAATC 59.122 45.833 0.00 0.00 39.03 2.67
175 176 4.536090 ACAGTTCCTCTAACCATCCAATCA 59.464 41.667 0.00 0.00 39.03 2.57
176 177 4.878397 CAGTTCCTCTAACCATCCAATCAC 59.122 45.833 0.00 0.00 39.03 3.06
177 178 4.536090 AGTTCCTCTAACCATCCAATCACA 59.464 41.667 0.00 0.00 39.03 3.58
178 179 5.192522 AGTTCCTCTAACCATCCAATCACAT 59.807 40.000 0.00 0.00 39.03 3.21
179 180 6.386927 AGTTCCTCTAACCATCCAATCACATA 59.613 38.462 0.00 0.00 39.03 2.29
180 181 7.072961 AGTTCCTCTAACCATCCAATCACATAT 59.927 37.037 0.00 0.00 39.03 1.78
181 182 7.392766 TCCTCTAACCATCCAATCACATATT 57.607 36.000 0.00 0.00 0.00 1.28
182 183 7.226441 TCCTCTAACCATCCAATCACATATTG 58.774 38.462 0.00 0.00 0.00 1.90
184 185 6.910191 TCTAACCATCCAATCACATATTGGT 58.090 36.000 14.66 0.00 46.47 3.67
185 186 7.353525 TCTAACCATCCAATCACATATTGGTT 58.646 34.615 14.66 9.17 46.47 3.67
186 187 6.469782 AACCATCCAATCACATATTGGTTC 57.530 37.500 14.66 0.00 46.47 3.62
187 188 4.580167 ACCATCCAATCACATATTGGTTCG 59.420 41.667 14.66 4.37 46.47 3.95
188 189 4.539870 CATCCAATCACATATTGGTTCGC 58.460 43.478 14.66 0.00 46.47 4.70
232 233 0.105401 TACATACTGGCATCCCCGGA 60.105 55.000 0.73 0.00 43.17 5.14
260 261 8.885494 TGCAGCATTTTAACTCAAAAATACTT 57.115 26.923 0.00 0.00 39.51 2.24
284 285 4.448732 GCAAAGGGCATTACTCACTTTTTG 59.551 41.667 0.00 0.00 43.97 2.44
290 291 6.015434 AGGGCATTACTCACTTTTTGGTTAAG 60.015 38.462 0.00 0.00 0.00 1.85
298 299 7.312899 ACTCACTTTTTGGTTAAGTTGTGAAG 58.687 34.615 0.00 0.00 33.73 3.02
332 333 7.961326 ATAGCAAACTCCAAATGATAGGTTT 57.039 32.000 0.00 0.00 0.00 3.27
333 334 6.029346 AGCAAACTCCAAATGATAGGTTTG 57.971 37.500 10.69 10.69 43.28 2.93
334 335 5.539955 AGCAAACTCCAAATGATAGGTTTGT 59.460 36.000 14.71 3.36 42.75 2.83
335 336 6.719370 AGCAAACTCCAAATGATAGGTTTGTA 59.281 34.615 14.71 0.00 42.75 2.41
336 337 6.806739 GCAAACTCCAAATGATAGGTTTGTAC 59.193 38.462 14.71 0.00 42.75 2.90
337 338 7.309194 GCAAACTCCAAATGATAGGTTTGTACT 60.309 37.037 14.71 0.00 42.75 2.73
338 339 7.687941 AACTCCAAATGATAGGTTTGTACTG 57.312 36.000 0.00 0.00 35.35 2.74
339 340 6.779860 ACTCCAAATGATAGGTTTGTACTGT 58.220 36.000 0.00 0.00 35.35 3.55
340 341 7.913789 ACTCCAAATGATAGGTTTGTACTGTA 58.086 34.615 0.00 0.00 35.35 2.74
341 342 7.822822 ACTCCAAATGATAGGTTTGTACTGTAC 59.177 37.037 10.98 10.98 35.35 2.90
342 343 7.107542 TCCAAATGATAGGTTTGTACTGTACC 58.892 38.462 14.91 2.45 35.35 3.34
343 344 6.882140 CCAAATGATAGGTTTGTACTGTACCA 59.118 38.462 14.91 1.42 35.35 3.25
344 345 7.065803 CCAAATGATAGGTTTGTACTGTACCAG 59.934 40.741 14.91 0.00 35.35 4.00
354 355 4.689071 TGTACTGTACCAGTGTCACTTTG 58.311 43.478 14.91 0.02 45.01 2.77
475 476 2.229690 ATCAAACCCCTTGCATGCGC 62.230 55.000 14.09 0.00 34.76 6.09
503 504 3.287222 TCAAAACAGTGGCTAGCAAACT 58.713 40.909 18.24 16.21 0.00 2.66
504 505 3.699038 TCAAAACAGTGGCTAGCAAACTT 59.301 39.130 18.24 7.64 0.00 2.66
542 545 9.050601 CATCCATCCTTGAGTTTATCTTAGAAC 57.949 37.037 0.00 0.00 0.00 3.01
717 744 1.741706 CCTGAAGGCTTATGTGCAGTG 59.258 52.381 0.00 0.00 34.04 3.66
720 747 1.747355 GAAGGCTTATGTGCAGTGCAT 59.253 47.619 22.87 8.96 41.91 3.96
729 756 1.202675 TGTGCAGTGCATGTTGAGAGA 60.203 47.619 22.87 0.00 41.91 3.10
734 761 3.136763 CAGTGCATGTTGAGAGACACTT 58.863 45.455 0.00 0.00 36.28 3.16
735 762 3.186001 CAGTGCATGTTGAGAGACACTTC 59.814 47.826 0.00 0.00 36.28 3.01
736 763 3.070734 AGTGCATGTTGAGAGACACTTCT 59.929 43.478 0.00 0.00 34.89 2.85
737 764 3.186001 GTGCATGTTGAGAGACACTTCTG 59.814 47.826 0.00 0.00 31.30 3.02
738 765 2.740981 GCATGTTGAGAGACACTTCTGG 59.259 50.000 0.00 0.00 31.30 3.86
742 769 3.834813 TGTTGAGAGACACTTCTGGCTAT 59.165 43.478 0.00 0.00 34.99 2.97
762 797 3.044235 TGGTCCATAGATAAGCATGCG 57.956 47.619 13.01 0.00 0.00 4.73
763 798 1.734465 GGTCCATAGATAAGCATGCGC 59.266 52.381 13.01 0.00 38.99 6.09
765 800 0.723414 CCATAGATAAGCATGCGCGG 59.277 55.000 13.01 0.00 45.49 6.46
766 801 0.095935 CATAGATAAGCATGCGCGGC 59.904 55.000 13.01 15.21 45.49 6.53
770 805 3.755526 ATAAGCATGCGCGGCTGGA 62.756 57.895 24.42 16.61 45.49 3.86
774 809 4.827087 CATGCGCGGCTGGAGAGT 62.827 66.667 8.83 0.00 0.00 3.24
775 810 4.087892 ATGCGCGGCTGGAGAGTT 62.088 61.111 8.83 0.00 0.00 3.01
776 811 3.612247 ATGCGCGGCTGGAGAGTTT 62.612 57.895 8.83 0.00 0.00 2.66
789 827 2.289506 GGAGAGTTTAGCAAGGGAACGT 60.290 50.000 0.00 0.00 0.00 3.99
790 828 2.994578 GAGAGTTTAGCAAGGGAACGTC 59.005 50.000 0.00 0.00 0.00 4.34
798 836 0.734253 CAAGGGAACGTCGCAGAGAG 60.734 60.000 0.00 0.00 36.95 3.20
801 839 2.507324 GAACGTCGCAGAGAGGGC 60.507 66.667 0.00 0.00 36.95 5.19
822 866 4.693532 CACCAGGTGTACGTGCAT 57.306 55.556 10.21 0.00 0.00 3.96
883 931 7.364970 GCCTTTTTAAGATTTTAACACGAGGA 58.635 34.615 0.00 0.00 0.00 3.71
885 933 8.565416 CCTTTTTAAGATTTTAACACGAGGACT 58.435 33.333 0.00 0.00 0.00 3.85
887 935 6.476243 TTAAGATTTTAACACGAGGACTGC 57.524 37.500 0.00 0.00 0.00 4.40
898 946 1.875576 CGAGGACTGCTTGTCTGCTTT 60.876 52.381 9.56 0.00 44.74 3.51
960 1008 2.584492 TGGACAGATACGTGATGCTG 57.416 50.000 0.00 2.73 34.65 4.41
963 1011 2.359214 GGACAGATACGTGATGCTGAGA 59.641 50.000 13.28 0.00 32.86 3.27
977 1070 3.348119 TGCTGAGACTATATAGAGGCCG 58.652 50.000 16.79 3.33 0.00 6.13
1011 1104 2.569059 CATCTTCCCACTCATCGCAAT 58.431 47.619 0.00 0.00 0.00 3.56
1021 1115 3.027412 ACTCATCGCAATCACCTCTAGT 58.973 45.455 0.00 0.00 0.00 2.57
1057 1178 6.373779 CAGTTTTGCTAAGGTAACACATCTG 58.626 40.000 0.00 0.00 41.41 2.90
1061 1182 5.483685 TGCTAAGGTAACACATCTGTCTT 57.516 39.130 0.00 0.00 41.41 3.01
1062 1183 6.599356 TGCTAAGGTAACACATCTGTCTTA 57.401 37.500 0.00 0.00 41.41 2.10
1063 1184 6.631016 TGCTAAGGTAACACATCTGTCTTAG 58.369 40.000 9.63 9.63 36.40 2.18
1065 1186 7.097834 GCTAAGGTAACACATCTGTCTTAGTT 58.902 38.462 13.12 4.33 36.06 2.24
1066 1187 7.603024 GCTAAGGTAACACATCTGTCTTAGTTT 59.397 37.037 13.12 1.50 36.06 2.66
1067 1188 7.730364 AAGGTAACACATCTGTCTTAGTTTG 57.270 36.000 0.00 0.00 41.41 2.93
1068 1189 6.231211 AGGTAACACATCTGTCTTAGTTTGG 58.769 40.000 0.00 0.00 41.41 3.28
1083 1210 9.141400 GTCTTAGTTTGGTTCTTACAGATACTG 57.859 37.037 0.00 0.00 37.52 2.74
1086 1213 5.934625 AGTTTGGTTCTTACAGATACTGCTG 59.065 40.000 0.00 0.00 41.63 4.41
1109 1236 5.981915 TGAGATTGAGCATTAACTGATCGAG 59.018 40.000 0.00 0.00 43.38 4.04
1171 1310 1.082690 GAGCAAGCGAAGGAAGGAAG 58.917 55.000 0.00 0.00 0.00 3.46
1277 1416 4.488911 AGGGAGCGGCAGGAGGAT 62.489 66.667 1.45 0.00 0.00 3.24
1320 1459 1.153168 GACCGCATACTGCCCATGT 60.153 57.895 0.00 0.00 41.12 3.21
1362 1501 4.899239 CCGAGGAGGACGGCATGC 62.899 72.222 9.90 9.90 45.00 4.06
1592 1731 2.736995 GCTGCTACGCCGACAACA 60.737 61.111 0.00 0.00 0.00 3.33
1593 1732 3.011760 GCTGCTACGCCGACAACAC 62.012 63.158 0.00 0.00 0.00 3.32
1594 1733 2.356553 TGCTACGCCGACAACACC 60.357 61.111 0.00 0.00 0.00 4.16
1595 1734 3.116531 GCTACGCCGACAACACCC 61.117 66.667 0.00 0.00 0.00 4.61
1596 1735 2.807895 CTACGCCGACAACACCCG 60.808 66.667 0.00 0.00 0.00 5.28
1597 1736 3.562779 CTACGCCGACAACACCCGT 62.563 63.158 0.00 0.00 36.07 5.28
1660 1799 4.587189 GCCGGACCCGAATCCTCG 62.587 72.222 5.05 0.00 45.02 4.63
1694 1833 1.814169 GGTGCGGAGAATTCGTCCC 60.814 63.158 14.56 10.08 41.12 4.46
1710 1849 4.680237 CCCGTGCGCTTCCTGTCA 62.680 66.667 9.73 0.00 0.00 3.58
1711 1850 3.414700 CCGTGCGCTTCCTGTCAC 61.415 66.667 9.73 0.00 0.00 3.67
1712 1851 3.767230 CGTGCGCTTCCTGTCACG 61.767 66.667 9.73 3.16 44.62 4.35
1716 1855 2.571757 CGCTTCCTGTCACGCCTA 59.428 61.111 0.00 0.00 0.00 3.93
1717 1856 1.805945 CGCTTCCTGTCACGCCTAC 60.806 63.158 0.00 0.00 0.00 3.18
1718 1857 1.592223 GCTTCCTGTCACGCCTACT 59.408 57.895 0.00 0.00 0.00 2.57
1719 1858 0.037232 GCTTCCTGTCACGCCTACTT 60.037 55.000 0.00 0.00 0.00 2.24
1766 1905 1.071987 GGTTCCGTTTCCGTTCCCT 59.928 57.895 0.00 0.00 0.00 4.20
1812 1951 1.754745 GCGGAGGGGCTGATGATTA 59.245 57.895 0.00 0.00 0.00 1.75
1827 1966 3.207265 TGATTATCCCACCCATCAACG 57.793 47.619 0.00 0.00 0.00 4.10
1828 1967 1.880027 GATTATCCCACCCATCAACGC 59.120 52.381 0.00 0.00 0.00 4.84
1838 1977 2.578713 ATCAACGCCGCGACTACG 60.579 61.111 21.79 8.59 42.93 3.51
1861 2000 1.741770 GCGCGTTCTTCCTGGACAT 60.742 57.895 8.43 0.00 0.00 3.06
1875 2014 0.391130 GGACATGAACAGCGGCACTA 60.391 55.000 0.00 0.00 0.00 2.74
1876 2015 1.002366 GACATGAACAGCGGCACTAG 58.998 55.000 0.00 0.00 0.00 2.57
1980 2122 0.249911 CCATCCTGCCGCTTACTACC 60.250 60.000 0.00 0.00 0.00 3.18
2018 2160 1.566018 CCAACGACGTTGAGGCCTTC 61.566 60.000 35.71 0.00 45.28 3.46
2081 2223 0.968901 TAGTGGGAGACGTCGCCATT 60.969 55.000 34.59 22.49 37.57 3.16
2149 2291 2.668889 ACAGCAGCAGCAGCAGAC 60.669 61.111 12.92 0.00 45.49 3.51
2176 2318 3.433306 CCTTGGTGGTAATGGTGAGAA 57.567 47.619 0.00 0.00 0.00 2.87
2231 2373 1.952296 GATGGTGCAGATGGGATGTTC 59.048 52.381 0.00 0.00 0.00 3.18
2424 2566 4.932789 GGGACGCAGCATCAGTTA 57.067 55.556 0.00 0.00 0.00 2.24
2514 2657 0.169230 TTTGTGTTGTGCGTGTGACC 59.831 50.000 0.00 0.00 0.00 4.02
2578 2721 1.343142 AGCCGTGATTGTGTGTACTCA 59.657 47.619 0.00 0.00 0.00 3.41
2579 2722 2.139917 GCCGTGATTGTGTGTACTCAA 58.860 47.619 0.00 2.47 34.43 3.02
2580 2723 2.546368 GCCGTGATTGTGTGTACTCAAA 59.454 45.455 0.00 0.00 33.76 2.69
2582 2725 4.523813 CCGTGATTGTGTGTACTCAAAAC 58.476 43.478 2.70 5.27 33.76 2.43
2584 2727 4.961551 CGTGATTGTGTGTACTCAAAACAC 59.038 41.667 18.71 18.71 45.96 3.32
2585 2728 5.220586 CGTGATTGTGTGTACTCAAAACACT 60.221 40.000 22.04 3.49 45.95 3.55
2609 2756 2.826777 ATCTCCAGCAGTTTGGCCCG 62.827 60.000 0.00 0.00 38.16 6.13
2630 2785 1.534717 ATGCCAAGGCCTTTGTGCT 60.535 52.632 17.61 6.43 41.09 4.40
2633 2788 0.601046 GCCAAGGCCTTTGTGCTTTC 60.601 55.000 17.61 0.00 34.87 2.62
2634 2789 0.033920 CCAAGGCCTTTGTGCTTTCC 59.966 55.000 17.61 0.00 34.87 3.13
2635 2790 0.318955 CAAGGCCTTTGTGCTTTCCG 60.319 55.000 17.61 0.00 31.92 4.30
2636 2791 2.049156 GGCCTTTGTGCTTTCCGC 60.049 61.111 0.00 0.00 39.77 5.54
2638 2793 2.855514 GCCTTTGTGCTTTCCGCCA 61.856 57.895 0.00 0.00 38.05 5.69
2640 2795 1.372128 CTTTGTGCTTTCCGCCAGC 60.372 57.895 0.00 0.00 38.05 4.85
2641 2796 3.192954 TTTGTGCTTTCCGCCAGCG 62.193 57.895 4.75 4.75 40.45 5.18
2642 2797 4.927782 TGTGCTTTCCGCCAGCGT 62.928 61.111 11.55 0.00 40.45 5.07
2644 2799 2.031314 TGCTTTCCGCCAGCGTTA 59.969 55.556 11.55 0.00 40.45 3.18
2647 2802 0.248094 GCTTTCCGCCAGCGTTATTC 60.248 55.000 11.55 0.00 37.81 1.75
2880 3036 1.264045 CCCATGTTTCGGCCCCAAAT 61.264 55.000 0.00 0.00 0.00 2.32
2908 3064 8.891720 CACAAAAATTCAAAATTCTCTTTCCCA 58.108 29.630 0.00 0.00 0.00 4.37
2911 3067 9.685276 AAAAATTCAAAATTCTCTTTCCCACTT 57.315 25.926 0.00 0.00 0.00 3.16
2945 3102 2.749280 TATTCGGCGATCATCATGCT 57.251 45.000 11.76 0.00 0.00 3.79
2949 3106 1.066136 CGGCGATCATCATGCTACAG 58.934 55.000 0.00 0.00 0.00 2.74
2975 3151 4.680110 CGACGATCGAATATAGCCAAAGTT 59.320 41.667 24.34 0.00 43.74 2.66
3134 3314 4.838152 CGTAGGCATGGGCGCAGT 62.838 66.667 10.83 0.00 42.47 4.40
3135 3315 2.438434 GTAGGCATGGGCGCAGTT 60.438 61.111 10.83 0.00 42.47 3.16
3136 3316 2.438254 TAGGCATGGGCGCAGTTG 60.438 61.111 10.83 4.71 42.47 3.16
3139 3319 4.360964 GCATGGGCGCAGTTGCAA 62.361 61.111 20.69 0.00 42.21 4.08
3140 3320 2.574929 CATGGGCGCAGTTGCAAT 59.425 55.556 10.83 0.00 42.21 3.56
3141 3321 1.807981 CATGGGCGCAGTTGCAATG 60.808 57.895 10.83 3.42 42.21 2.82
3142 3322 3.652539 ATGGGCGCAGTTGCAATGC 62.653 57.895 10.83 18.26 42.21 3.56
3143 3323 4.060038 GGGCGCAGTTGCAATGCT 62.060 61.111 22.65 7.77 41.61 3.79
3144 3324 2.505557 GGCGCAGTTGCAATGCTC 60.506 61.111 22.65 17.77 41.61 4.26
3145 3325 2.872925 GCGCAGTTGCAATGCTCG 60.873 61.111 22.65 16.07 41.61 5.03
3146 3326 2.202388 CGCAGTTGCAATGCTCGG 60.202 61.111 22.65 10.49 41.61 4.63
3147 3327 2.505557 GCAGTTGCAATGCTCGGC 60.506 61.111 19.93 8.42 40.59 5.54
3195 3405 1.140852 CCCGGCATCTGGTTCAAGATA 59.859 52.381 0.00 0.00 35.09 1.98
3208 3418 0.179111 CAAGATAAGGTCGCGCTCCA 60.179 55.000 19.04 3.48 0.00 3.86
3262 3472 1.890979 GCCATGTCTGCTCCCATCG 60.891 63.158 0.00 0.00 0.00 3.84
3293 3503 1.000496 GTCGGTGTTCCTCTTCTTCGT 60.000 52.381 0.00 0.00 0.00 3.85
3311 3521 0.249155 GTGACGACGTTGGTCCTGAA 60.249 55.000 15.39 0.00 40.17 3.02
3333 3544 0.247736 GGTCGAGCTTGACATCCTGT 59.752 55.000 30.70 0.00 40.72 4.00
3349 3560 1.811965 CCTGTTTCGTCATCAATGCCA 59.188 47.619 0.00 0.00 0.00 4.92
3350 3561 2.159476 CCTGTTTCGTCATCAATGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
3402 3613 4.314440 GTGTGGCTCCTGGCGTCA 62.314 66.667 0.00 0.00 42.94 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.229811 TGACTTCGTGAATTTTAAGATGACATG 58.770 33.333 0.00 0.00 0.00 3.21
2 3 8.230486 GTGACTTCGTGAATTTTAAGATGACAT 58.770 33.333 0.00 0.00 0.00 3.06
3 4 7.441157 AGTGACTTCGTGAATTTTAAGATGACA 59.559 33.333 0.00 0.00 0.00 3.58
4 5 7.742089 CAGTGACTTCGTGAATTTTAAGATGAC 59.258 37.037 0.00 0.00 0.00 3.06
5 6 7.441157 ACAGTGACTTCGTGAATTTTAAGATGA 59.559 33.333 0.00 0.00 0.00 2.92
6 7 7.576236 ACAGTGACTTCGTGAATTTTAAGATG 58.424 34.615 0.00 0.00 0.00 2.90
7 8 7.730364 ACAGTGACTTCGTGAATTTTAAGAT 57.270 32.000 0.00 0.00 0.00 2.40
8 9 7.384115 CCTACAGTGACTTCGTGAATTTTAAGA 59.616 37.037 0.00 0.00 0.00 2.10
9 10 7.510630 CCTACAGTGACTTCGTGAATTTTAAG 58.489 38.462 0.00 0.00 0.00 1.85
10 11 6.073440 GCCTACAGTGACTTCGTGAATTTTAA 60.073 38.462 0.00 0.00 0.00 1.52
11 12 5.407387 GCCTACAGTGACTTCGTGAATTTTA 59.593 40.000 0.00 0.00 0.00 1.52
12 13 4.213482 GCCTACAGTGACTTCGTGAATTTT 59.787 41.667 0.00 0.00 0.00 1.82
13 14 3.746492 GCCTACAGTGACTTCGTGAATTT 59.254 43.478 0.00 0.00 0.00 1.82
14 15 3.326747 GCCTACAGTGACTTCGTGAATT 58.673 45.455 0.00 0.00 0.00 2.17
15 16 2.671351 CGCCTACAGTGACTTCGTGAAT 60.671 50.000 0.00 0.00 0.00 2.57
16 17 1.335597 CGCCTACAGTGACTTCGTGAA 60.336 52.381 0.00 0.00 0.00 3.18
17 18 0.240145 CGCCTACAGTGACTTCGTGA 59.760 55.000 0.00 0.00 0.00 4.35
18 19 1.344942 GCGCCTACAGTGACTTCGTG 61.345 60.000 0.00 0.00 0.00 4.35
19 20 1.080705 GCGCCTACAGTGACTTCGT 60.081 57.895 0.00 0.00 0.00 3.85
20 21 1.805945 GGCGCCTACAGTGACTTCG 60.806 63.158 22.15 0.00 0.00 3.79
21 22 1.592223 AGGCGCCTACAGTGACTTC 59.408 57.895 31.86 0.00 44.04 3.01
22 23 2.058675 AAGGCGCCTACAGTGACTT 58.941 52.632 33.07 7.71 46.55 3.01
24 25 1.004918 ACAAGGCGCCTACAGTGAC 60.005 57.895 33.07 0.00 0.00 3.67
25 26 1.292223 GACAAGGCGCCTACAGTGA 59.708 57.895 33.07 0.00 0.00 3.41
26 27 2.094659 CGACAAGGCGCCTACAGTG 61.095 63.158 33.07 26.40 0.00 3.66
27 28 2.095978 AACGACAAGGCGCCTACAGT 62.096 55.000 33.07 27.62 33.86 3.55
28 29 1.352156 GAACGACAAGGCGCCTACAG 61.352 60.000 33.07 24.44 33.86 2.74
29 30 1.373748 GAACGACAAGGCGCCTACA 60.374 57.895 33.07 0.00 33.86 2.74
30 31 1.373748 TGAACGACAAGGCGCCTAC 60.374 57.895 33.07 22.26 33.86 3.18
31 32 1.373748 GTGAACGACAAGGCGCCTA 60.374 57.895 33.07 8.62 33.86 3.93
32 33 2.665185 GTGAACGACAAGGCGCCT 60.665 61.111 27.08 27.08 33.86 5.52
33 34 4.072088 CGTGAACGACAAGGCGCC 62.072 66.667 21.89 21.89 43.02 6.53
34 35 4.072088 CCGTGAACGACAAGGCGC 62.072 66.667 0.00 0.00 40.77 6.53
35 36 3.411351 CCCGTGAACGACAAGGCG 61.411 66.667 4.03 0.00 44.66 5.52
36 37 1.595929 TTCCCGTGAACGACAAGGC 60.596 57.895 4.03 0.00 44.66 4.35
37 38 2.231820 GTTCCCGTGAACGACAAGG 58.768 57.895 4.03 10.73 45.38 3.61
49 50 1.080705 GTGAGAGGTGACGTTCCCG 60.081 63.158 7.03 0.00 40.83 5.14
50 51 0.038159 CAGTGAGAGGTGACGTTCCC 60.038 60.000 7.03 2.12 0.00 3.97
51 52 0.959553 TCAGTGAGAGGTGACGTTCC 59.040 55.000 0.00 0.00 0.00 3.62
52 53 2.795175 TTCAGTGAGAGGTGACGTTC 57.205 50.000 0.00 0.00 0.00 3.95
53 54 2.803492 GCTTTCAGTGAGAGGTGACGTT 60.803 50.000 12.28 0.00 0.00 3.99
54 55 1.269831 GCTTTCAGTGAGAGGTGACGT 60.270 52.381 12.28 0.00 0.00 4.34
55 56 1.269778 TGCTTTCAGTGAGAGGTGACG 60.270 52.381 12.28 0.00 0.00 4.35
56 57 2.139118 GTGCTTTCAGTGAGAGGTGAC 58.861 52.381 12.28 0.00 0.00 3.67
57 58 1.762370 TGTGCTTTCAGTGAGAGGTGA 59.238 47.619 12.28 0.00 0.00 4.02
58 59 2.245159 TGTGCTTTCAGTGAGAGGTG 57.755 50.000 12.28 0.00 0.00 4.00
59 60 2.611473 CGATGTGCTTTCAGTGAGAGGT 60.611 50.000 12.28 0.00 0.00 3.85
60 61 1.998315 CGATGTGCTTTCAGTGAGAGG 59.002 52.381 12.28 0.00 0.00 3.69
61 62 1.392853 GCGATGTGCTTTCAGTGAGAG 59.607 52.381 6.31 6.31 41.73 3.20
62 63 1.432514 GCGATGTGCTTTCAGTGAGA 58.567 50.000 0.00 0.00 41.73 3.27
63 64 0.445436 GGCGATGTGCTTTCAGTGAG 59.555 55.000 0.00 0.00 45.43 3.51
64 65 1.291184 CGGCGATGTGCTTTCAGTGA 61.291 55.000 0.00 0.00 45.43 3.41
65 66 1.133253 CGGCGATGTGCTTTCAGTG 59.867 57.895 0.00 0.00 45.43 3.66
66 67 2.034879 CCGGCGATGTGCTTTCAGT 61.035 57.895 9.30 0.00 45.43 3.41
67 68 1.298157 TTCCGGCGATGTGCTTTCAG 61.298 55.000 9.30 0.00 45.43 3.02
68 69 0.886938 TTTCCGGCGATGTGCTTTCA 60.887 50.000 9.30 0.00 45.43 2.69
69 70 0.451783 ATTTCCGGCGATGTGCTTTC 59.548 50.000 9.30 0.00 45.43 2.62
70 71 0.451783 GATTTCCGGCGATGTGCTTT 59.548 50.000 9.30 0.00 45.43 3.51
71 72 1.376609 GGATTTCCGGCGATGTGCTT 61.377 55.000 9.30 0.00 45.43 3.91
72 73 1.819632 GGATTTCCGGCGATGTGCT 60.820 57.895 9.30 0.00 45.43 4.40
73 74 1.819632 AGGATTTCCGGCGATGTGC 60.820 57.895 9.30 0.00 42.08 4.57
74 75 0.461870 TCAGGATTTCCGGCGATGTG 60.462 55.000 9.30 0.00 42.08 3.21
75 76 0.251916 TTCAGGATTTCCGGCGATGT 59.748 50.000 9.30 0.00 42.08 3.06
76 77 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
77 78 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
78 79 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
79 80 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
80 81 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
81 82 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
89 90 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
90 91 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
91 92 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
92 93 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
93 94 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
94 95 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
95 96 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
96 97 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
97 98 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
98 99 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
99 100 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
100 101 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
101 102 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
102 103 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
103 104 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
104 105 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
105 106 1.599542 GTCCTGGTGCTCGCATTATTC 59.400 52.381 0.00 0.00 0.00 1.75
106 107 1.210478 AGTCCTGGTGCTCGCATTATT 59.790 47.619 0.00 0.00 0.00 1.40
107 108 0.833287 AGTCCTGGTGCTCGCATTAT 59.167 50.000 0.00 0.00 0.00 1.28
108 109 0.613260 AAGTCCTGGTGCTCGCATTA 59.387 50.000 0.00 0.00 0.00 1.90
109 110 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
110 111 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
111 112 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
112 113 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
113 114 0.034059 AGTTCAAGTCCTGGTGCTCG 59.966 55.000 0.00 0.00 0.00 5.03
114 115 1.346068 AGAGTTCAAGTCCTGGTGCTC 59.654 52.381 0.00 0.00 0.00 4.26
115 116 1.071385 CAGAGTTCAAGTCCTGGTGCT 59.929 52.381 0.00 0.00 0.00 4.40
116 117 1.517242 CAGAGTTCAAGTCCTGGTGC 58.483 55.000 0.00 0.00 0.00 5.01
117 118 2.175878 CCAGAGTTCAAGTCCTGGTG 57.824 55.000 0.00 0.00 40.84 4.17
120 121 1.271054 CCCACCAGAGTTCAAGTCCTG 60.271 57.143 0.00 0.00 0.00 3.86
121 122 1.059913 CCCACCAGAGTTCAAGTCCT 58.940 55.000 0.00 0.00 0.00 3.85
122 123 0.606673 GCCCACCAGAGTTCAAGTCC 60.607 60.000 0.00 0.00 0.00 3.85
123 124 0.398318 AGCCCACCAGAGTTCAAGTC 59.602 55.000 0.00 0.00 0.00 3.01
124 125 0.109342 CAGCCCACCAGAGTTCAAGT 59.891 55.000 0.00 0.00 0.00 3.16
125 126 0.607489 CCAGCCCACCAGAGTTCAAG 60.607 60.000 0.00 0.00 0.00 3.02
126 127 1.455849 CCAGCCCACCAGAGTTCAA 59.544 57.895 0.00 0.00 0.00 2.69
127 128 2.528818 CCCAGCCCACCAGAGTTCA 61.529 63.158 0.00 0.00 0.00 3.18
128 129 2.352805 CCCAGCCCACCAGAGTTC 59.647 66.667 0.00 0.00 0.00 3.01
129 130 3.260100 CCCCAGCCCACCAGAGTT 61.260 66.667 0.00 0.00 0.00 3.01
130 131 2.194951 TATCCCCAGCCCACCAGAGT 62.195 60.000 0.00 0.00 0.00 3.24
131 132 0.988145 TTATCCCCAGCCCACCAGAG 60.988 60.000 0.00 0.00 0.00 3.35
132 133 1.083895 TTATCCCCAGCCCACCAGA 59.916 57.895 0.00 0.00 0.00 3.86
133 134 1.227383 GTTATCCCCAGCCCACCAG 59.773 63.158 0.00 0.00 0.00 4.00
134 135 1.542628 TGTTATCCCCAGCCCACCA 60.543 57.895 0.00 0.00 0.00 4.17
135 136 1.076995 GTGTTATCCCCAGCCCACC 60.077 63.158 0.00 0.00 0.00 4.61
136 137 0.394352 CTGTGTTATCCCCAGCCCAC 60.394 60.000 0.00 0.00 0.00 4.61
137 138 0.844661 ACTGTGTTATCCCCAGCCCA 60.845 55.000 0.00 0.00 0.00 5.36
138 139 0.331616 AACTGTGTTATCCCCAGCCC 59.668 55.000 0.00 0.00 0.00 5.19
139 140 1.682087 GGAACTGTGTTATCCCCAGCC 60.682 57.143 0.00 0.00 0.00 4.85
140 141 1.282157 AGGAACTGTGTTATCCCCAGC 59.718 52.381 0.00 0.00 37.18 4.85
141 142 2.840651 AGAGGAACTGTGTTATCCCCAG 59.159 50.000 0.00 0.00 41.55 4.45
142 143 2.915869 AGAGGAACTGTGTTATCCCCA 58.084 47.619 0.00 0.00 41.55 4.96
143 144 4.383880 GGTTAGAGGAACTGTGTTATCCCC 60.384 50.000 0.00 0.00 41.55 4.81
144 145 4.224370 TGGTTAGAGGAACTGTGTTATCCC 59.776 45.833 0.00 0.00 41.55 3.85
145 146 5.416271 TGGTTAGAGGAACTGTGTTATCC 57.584 43.478 0.00 0.00 41.55 2.59
146 147 6.049790 GGATGGTTAGAGGAACTGTGTTATC 58.950 44.000 0.00 0.00 41.55 1.75
147 148 5.487488 TGGATGGTTAGAGGAACTGTGTTAT 59.513 40.000 0.00 0.00 41.55 1.89
148 149 4.841813 TGGATGGTTAGAGGAACTGTGTTA 59.158 41.667 0.00 0.00 41.55 2.41
149 150 3.650942 TGGATGGTTAGAGGAACTGTGTT 59.349 43.478 0.00 0.00 41.55 3.32
150 151 3.248024 TGGATGGTTAGAGGAACTGTGT 58.752 45.455 0.00 0.00 41.55 3.72
151 152 3.981071 TGGATGGTTAGAGGAACTGTG 57.019 47.619 0.00 0.00 41.55 3.66
152 153 4.536090 TGATTGGATGGTTAGAGGAACTGT 59.464 41.667 0.00 0.00 41.55 3.55
153 154 4.878397 GTGATTGGATGGTTAGAGGAACTG 59.122 45.833 0.00 0.00 41.55 3.16
155 156 4.843728 TGTGATTGGATGGTTAGAGGAAC 58.156 43.478 0.00 0.00 37.31 3.62
156 157 5.715439 ATGTGATTGGATGGTTAGAGGAA 57.285 39.130 0.00 0.00 0.00 3.36
157 158 7.226441 CAATATGTGATTGGATGGTTAGAGGA 58.774 38.462 0.00 0.00 0.00 3.71
158 159 7.444629 CAATATGTGATTGGATGGTTAGAGG 57.555 40.000 0.00 0.00 0.00 3.69
170 171 2.223226 TGCGCGAACCAATATGTGATTG 60.223 45.455 12.10 0.00 0.00 2.67
171 172 2.013400 TGCGCGAACCAATATGTGATT 58.987 42.857 12.10 0.00 0.00 2.57
172 173 1.330521 GTGCGCGAACCAATATGTGAT 59.669 47.619 12.10 0.00 0.00 3.06
173 174 0.724549 GTGCGCGAACCAATATGTGA 59.275 50.000 12.10 0.00 0.00 3.58
174 175 0.248054 GGTGCGCGAACCAATATGTG 60.248 55.000 31.88 0.00 40.22 3.21
175 176 1.701545 CGGTGCGCGAACCAATATGT 61.702 55.000 34.78 0.00 40.53 2.29
176 177 1.011242 CGGTGCGCGAACCAATATG 60.011 57.895 34.78 15.31 40.53 1.78
177 178 2.819552 GCGGTGCGCGAACCAATAT 61.820 57.895 34.78 0.00 44.55 1.28
178 179 3.492545 GCGGTGCGCGAACCAATA 61.493 61.111 34.78 0.00 44.55 1.90
188 189 1.052287 GTGAAAAATTGAGCGGTGCG 58.948 50.000 0.00 0.00 0.00 5.34
337 338 3.035363 TCTCCAAAGTGACACTGGTACA 58.965 45.455 9.33 0.00 0.00 2.90
338 339 3.555168 CCTCTCCAAAGTGACACTGGTAC 60.555 52.174 9.33 0.00 0.00 3.34
339 340 2.632996 CCTCTCCAAAGTGACACTGGTA 59.367 50.000 9.33 0.95 0.00 3.25
340 341 1.417890 CCTCTCCAAAGTGACACTGGT 59.582 52.381 9.33 0.00 0.00 4.00
341 342 1.271054 CCCTCTCCAAAGTGACACTGG 60.271 57.143 9.33 8.22 0.00 4.00
342 343 1.879796 GCCCTCTCCAAAGTGACACTG 60.880 57.143 9.33 0.00 0.00 3.66
343 344 0.398318 GCCCTCTCCAAAGTGACACT 59.602 55.000 1.07 1.07 0.00 3.55
344 345 0.951040 CGCCCTCTCCAAAGTGACAC 60.951 60.000 0.00 0.00 0.00 3.67
354 355 2.034221 AACTTTGGCGCCCTCTCC 59.966 61.111 26.77 0.00 0.00 3.71
423 424 8.417106 GTCCTGTGATCAGTTTCTATCTCATAA 58.583 37.037 0.00 0.00 39.82 1.90
424 425 7.561356 TGTCCTGTGATCAGTTTCTATCTCATA 59.439 37.037 0.00 0.00 39.82 2.15
425 426 6.382282 TGTCCTGTGATCAGTTTCTATCTCAT 59.618 38.462 0.00 0.00 39.82 2.90
426 427 5.716703 TGTCCTGTGATCAGTTTCTATCTCA 59.283 40.000 0.00 0.00 39.82 3.27
447 448 2.493278 CAAGGGGTTTGATCCATGTGTC 59.507 50.000 0.00 0.00 39.21 3.67
475 476 1.670811 AGCCACTGTTTTGAGAACGTG 59.329 47.619 0.00 4.68 0.00 4.49
478 479 2.878406 TGCTAGCCACTGTTTTGAGAAC 59.122 45.455 13.29 0.00 0.00 3.01
503 504 3.964688 AGGATGGATGTATGTGTCCGTAA 59.035 43.478 0.00 0.00 37.32 3.18
504 505 3.572642 AGGATGGATGTATGTGTCCGTA 58.427 45.455 0.00 0.00 37.32 4.02
542 545 4.158949 TGATGCTCAAGGATGGATGTTTTG 59.841 41.667 0.00 0.00 0.00 2.44
707 734 3.004862 CTCTCAACATGCACTGCACATA 58.995 45.455 5.67 0.00 43.04 2.29
708 735 1.810755 CTCTCAACATGCACTGCACAT 59.189 47.619 5.67 0.00 43.04 3.21
717 744 2.740981 CCAGAAGTGTCTCTCAACATGC 59.259 50.000 0.00 0.00 28.78 4.06
720 747 2.042464 AGCCAGAAGTGTCTCTCAACA 58.958 47.619 0.00 0.00 28.78 3.33
729 756 1.656587 TGGACCATAGCCAGAAGTGT 58.343 50.000 0.00 0.00 0.00 3.55
734 761 4.467795 GCTTATCTATGGACCATAGCCAGA 59.532 45.833 29.74 18.97 42.33 3.86
735 762 4.223700 TGCTTATCTATGGACCATAGCCAG 59.776 45.833 29.74 24.25 42.33 4.85
736 763 4.167319 TGCTTATCTATGGACCATAGCCA 58.833 43.478 29.74 19.31 42.33 4.75
737 764 4.826274 TGCTTATCTATGGACCATAGCC 57.174 45.455 29.74 17.55 42.33 3.93
738 765 4.574013 GCATGCTTATCTATGGACCATAGC 59.426 45.833 29.74 22.99 42.33 2.97
742 769 2.871637 GCGCATGCTTATCTATGGACCA 60.872 50.000 17.13 0.00 38.39 4.02
762 797 0.673644 TTGCTAAACTCTCCAGCCGC 60.674 55.000 0.00 0.00 34.31 6.53
763 798 1.363744 CTTGCTAAACTCTCCAGCCG 58.636 55.000 0.00 0.00 34.31 5.52
765 800 1.279271 TCCCTTGCTAAACTCTCCAGC 59.721 52.381 0.00 0.00 35.82 4.85
766 801 3.339141 GTTCCCTTGCTAAACTCTCCAG 58.661 50.000 0.00 0.00 0.00 3.86
770 805 2.609737 CGACGTTCCCTTGCTAAACTCT 60.610 50.000 0.00 0.00 0.00 3.24
771 806 1.725164 CGACGTTCCCTTGCTAAACTC 59.275 52.381 0.00 0.00 0.00 3.01
772 807 1.792006 CGACGTTCCCTTGCTAAACT 58.208 50.000 0.00 0.00 0.00 2.66
774 809 0.249953 TGCGACGTTCCCTTGCTAAA 60.250 50.000 0.00 0.00 0.00 1.85
775 810 0.669318 CTGCGACGTTCCCTTGCTAA 60.669 55.000 0.00 0.00 0.00 3.09
776 811 1.080093 CTGCGACGTTCCCTTGCTA 60.080 57.895 0.00 0.00 0.00 3.49
798 836 3.702048 TACACCTGGTGCTCGCCC 61.702 66.667 26.20 0.00 36.98 6.13
801 839 1.733041 CACGTACACCTGGTGCTCG 60.733 63.158 29.08 29.08 36.98 5.03
822 866 2.354704 CCCTAATTCACGCAAGACTGGA 60.355 50.000 0.00 0.00 43.62 3.86
858 902 7.325338 GTCCTCGTGTTAAAATCTTAAAAAGGC 59.675 37.037 0.00 0.00 0.00 4.35
883 931 0.950116 GAGCAAAGCAGACAAGCAGT 59.050 50.000 0.00 0.00 36.85 4.40
885 933 1.335810 CTTGAGCAAAGCAGACAAGCA 59.664 47.619 0.00 0.00 36.85 3.91
937 985 3.118629 AGCATCACGTATCTGTCCATTGT 60.119 43.478 0.00 0.00 0.00 2.71
960 1008 2.025898 GGGCGGCCTCTATATAGTCTC 58.974 57.143 22.87 0.00 0.00 3.36
963 1011 1.342175 GGAGGGCGGCCTCTATATAGT 60.342 57.143 44.95 18.57 37.05 2.12
989 1082 0.533755 GCGATGAGTGGGAAGATGGG 60.534 60.000 0.00 0.00 0.00 4.00
1021 1115 1.202245 GCAAAACTGCAAACTCGGTCA 60.202 47.619 0.00 0.00 34.41 4.02
1029 1147 5.105716 TGTGTTACCTTAGCAAAACTGCAAA 60.106 36.000 0.00 0.00 37.25 3.68
1083 1210 5.333187 CGATCAGTTAATGCTCAATCTCAGC 60.333 44.000 0.00 0.00 37.40 4.26
1086 1213 5.404968 CCTCGATCAGTTAATGCTCAATCTC 59.595 44.000 0.00 0.00 0.00 2.75
1129 1265 2.568090 CCATCACCCTGCGTTTGC 59.432 61.111 0.00 0.00 43.20 3.68
1159 1298 1.222113 GCTCCCCTTCCTTCCTTCG 59.778 63.158 0.00 0.00 0.00 3.79
1251 1390 2.581354 CCGCTCCCTCCAGAACTG 59.419 66.667 0.00 0.00 0.00 3.16
1252 1391 3.394836 GCCGCTCCCTCCAGAACT 61.395 66.667 0.00 0.00 0.00 3.01
1277 1416 2.043752 TCCACCGTCGCCTCCATA 60.044 61.111 0.00 0.00 0.00 2.74
1583 1722 4.922026 ACCACGGGTGTTGTCGGC 62.922 66.667 0.00 0.00 32.98 5.54
1616 1755 0.463474 GCTTCCTGGTGATGAGCCTC 60.463 60.000 0.00 0.00 0.00 4.70
1694 1833 3.414700 GTGACAGGAAGCGCACGG 61.415 66.667 11.47 2.41 0.00 4.94
1812 1951 2.275418 GGCGTTGATGGGTGGGAT 59.725 61.111 0.00 0.00 0.00 3.85
1838 1977 4.736896 AGGAAGAACGCGCGACCC 62.737 66.667 39.36 25.94 0.00 4.46
1840 1979 3.479269 CCAGGAAGAACGCGCGAC 61.479 66.667 39.36 27.76 0.00 5.19
1841 1980 3.676605 TCCAGGAAGAACGCGCGA 61.677 61.111 39.36 6.60 0.00 5.87
1846 1985 2.738846 CTGTTCATGTCCAGGAAGAACG 59.261 50.000 18.70 12.86 40.95 3.95
1861 2000 0.670546 GAAGCTAGTGCCGCTGTTCA 60.671 55.000 0.00 0.00 40.80 3.18
1957 2099 1.090052 GTAAGCGGCAGGATGGACAC 61.090 60.000 1.45 0.00 35.86 3.67
1980 2122 3.118454 CACCGGGTAAGCGCACAG 61.118 66.667 11.47 0.00 0.00 3.66
2081 2223 2.720254 TCCCTCTATAATCTCCGGTGGA 59.280 50.000 0.00 1.26 0.00 4.02
2176 2318 2.520500 TTTGCGGCACCACCACAT 60.521 55.556 0.05 0.00 39.03 3.21
2308 2450 1.000163 CGACGATGAAATCCTCCGGAT 60.000 52.381 3.57 0.00 45.46 4.18
2312 2454 1.136305 TGGTCGACGATGAAATCCTCC 59.864 52.381 9.92 0.00 41.39 4.30
2420 2562 7.731882 TCGAGAGACGATAGATGAATTAACT 57.268 36.000 0.00 0.00 46.45 2.24
2514 2657 0.462047 GGGCGAACCATACAGTCCAG 60.462 60.000 0.00 0.00 39.85 3.86
2578 2721 4.040952 ACTGCTGGAGATACTCAGTGTTTT 59.959 41.667 2.24 0.00 36.72 2.43
2579 2722 3.580458 ACTGCTGGAGATACTCAGTGTTT 59.420 43.478 2.24 0.00 36.72 2.83
2580 2723 3.169099 ACTGCTGGAGATACTCAGTGTT 58.831 45.455 2.24 0.00 36.72 3.32
2582 2725 3.883830 AACTGCTGGAGATACTCAGTG 57.116 47.619 2.24 0.00 37.96 3.66
2584 2727 3.529533 CCAAACTGCTGGAGATACTCAG 58.470 50.000 2.24 0.00 38.96 3.35
2585 2728 2.355108 GCCAAACTGCTGGAGATACTCA 60.355 50.000 2.24 0.00 38.96 3.41
2616 2771 0.318955 CGGAAAGCACAAAGGCCTTG 60.319 55.000 21.33 15.57 41.19 3.61
2865 3020 1.834378 TGCATTTGGGGCCGAAACA 60.834 52.632 16.30 7.97 0.00 2.83
2880 3036 8.397148 GGAAAGAGAATTTTGAATTTTTGTGCA 58.603 29.630 0.00 0.00 0.00 4.57
2927 3084 2.289010 TGTAGCATGATGATCGCCGAAT 60.289 45.455 0.00 0.00 0.00 3.34
2963 3139 4.642445 TGATCGTCGAACTTTGGCTATA 57.358 40.909 0.00 0.00 0.00 1.31
2975 3151 0.391130 CCTGCCCTTTTGATCGTCGA 60.391 55.000 0.00 0.00 0.00 4.20
3124 3304 2.574929 CATTGCAACTGCGCCCAT 59.425 55.556 4.18 0.00 45.83 4.00
3125 3305 4.360964 GCATTGCAACTGCGCCCA 62.361 61.111 4.18 0.00 45.83 5.36
3126 3306 3.976902 GAGCATTGCAACTGCGCCC 62.977 63.158 20.58 13.66 44.38 6.13
3127 3307 2.505557 GAGCATTGCAACTGCGCC 60.506 61.111 20.58 15.34 44.38 6.53
3128 3308 2.872925 CGAGCATTGCAACTGCGC 60.873 61.111 20.58 20.12 44.38 6.09
3129 3309 2.202388 CCGAGCATTGCAACTGCG 60.202 61.111 20.58 13.97 44.38 5.18
3130 3310 2.505557 GCCGAGCATTGCAACTGC 60.506 61.111 19.73 19.73 39.97 4.40
3131 3311 2.202388 CGCCGAGCATTGCAACTG 60.202 61.111 11.91 2.76 0.00 3.16
3132 3312 2.260869 AACGCCGAGCATTGCAACT 61.261 52.632 11.91 0.00 0.00 3.16
3133 3313 2.082366 CAACGCCGAGCATTGCAAC 61.082 57.895 11.91 3.70 0.00 4.17
3134 3314 2.254951 CAACGCCGAGCATTGCAA 59.745 55.556 11.91 0.00 0.00 4.08
3135 3315 3.736100 CCAACGCCGAGCATTGCA 61.736 61.111 11.91 0.00 29.99 4.08
3137 3317 4.817063 CGCCAACGCCGAGCATTG 62.817 66.667 0.00 0.00 31.23 2.82
3145 3325 4.012895 CACTGTCACGCCAACGCC 62.013 66.667 0.00 0.00 45.53 5.68
3146 3326 4.012895 CCACTGTCACGCCAACGC 62.013 66.667 0.00 0.00 45.53 4.84
3195 3405 4.379243 CTGGTGGAGCGCGACCTT 62.379 66.667 21.31 0.00 42.77 3.50
3208 3418 0.677842 GTGAAGACGTGGTACCTGGT 59.322 55.000 14.36 10.78 0.00 4.00
3262 3472 2.214920 ACACCGACCTGGAGTTCCC 61.215 63.158 0.00 0.00 38.54 3.97
3268 3478 0.471211 AAGAGGAACACCGACCTGGA 60.471 55.000 0.00 0.00 42.00 3.86
3293 3503 0.460722 TTTCAGGACCAACGTCGTCA 59.539 50.000 15.32 0.00 40.17 4.35
3311 3521 1.625818 AGGATGTCAAGCTCGACCTTT 59.374 47.619 1.52 0.00 34.88 3.11
3333 3544 0.810648 GGCTGGCATTGATGACGAAA 59.189 50.000 0.00 0.00 39.17 3.46
3402 3613 1.405463 TCGATAGAACAGTGCATCGCT 59.595 47.619 10.48 0.00 46.15 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.