Multiple sequence alignment - TraesCS7A01G336500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G336500 chr7A 100.000 3256 0 0 956 4211 492265888 492269143 0.000000e+00 6013.0
1 TraesCS7A01G336500 chr7A 100.000 634 0 0 1 634 492264933 492265566 0.000000e+00 1171.0
2 TraesCS7A01G336500 chr7D 94.408 2432 86 20 1729 4138 440976587 440978990 0.000000e+00 3692.0
3 TraesCS7A01G336500 chr7D 90.084 1422 86 19 968 2376 440592709 440594088 0.000000e+00 1794.0
4 TraesCS7A01G336500 chr7D 92.690 985 50 11 2390 3368 440594073 440595041 0.000000e+00 1400.0
5 TraesCS7A01G336500 chr7D 94.715 738 29 6 966 1696 440975768 440976502 0.000000e+00 1138.0
6 TraesCS7A01G336500 chr7D 89.423 416 11 15 220 634 440592264 440592647 1.050000e-135 494.0
7 TraesCS7A01G336500 chr7D 81.801 522 50 19 116 634 440975224 440975703 3.050000e-106 396.0
8 TraesCS7A01G336500 chr7D 92.763 152 8 3 54 205 440592132 440592280 2.550000e-52 217.0
9 TraesCS7A01G336500 chr7B 90.363 1515 103 15 2390 3888 458452117 458453604 0.000000e+00 1949.0
10 TraesCS7A01G336500 chr7B 91.234 1426 85 19 963 2376 458448375 458449772 0.000000e+00 1905.0
11 TraesCS7A01G336500 chr7B 90.603 979 56 8 2390 3368 458449757 458450699 0.000000e+00 1266.0
12 TraesCS7A01G336500 chr7B 88.730 559 27 10 1680 2232 458451353 458451881 0.000000e+00 651.0
13 TraesCS7A01G336500 chr7B 88.038 418 15 10 218 634 458447499 458447882 2.970000e-126 462.0
14 TraesCS7A01G336500 chr7B 91.321 265 16 5 2117 2376 458451870 458452132 5.180000e-94 355.0
15 TraesCS7A01G336500 chr7B 91.204 216 12 5 1486 1695 458451121 458451335 1.920000e-73 287.0
16 TraesCS7A01G336500 chr7B 90.789 152 11 2 54 205 458447369 458447517 2.570000e-47 200.0
17 TraesCS7A01G336500 chr7B 96.154 52 1 1 4044 4095 610821369 610821319 2.700000e-12 84.2
18 TraesCS7A01G336500 chr7B 92.857 42 1 2 15 55 486677146 486677186 4.550000e-05 60.2
19 TraesCS7A01G336500 chr5B 83.735 166 20 5 4044 4208 330415662 330415821 2.620000e-32 150.0
20 TraesCS7A01G336500 chr5B 92.857 42 1 2 15 55 535065118 535065078 4.550000e-05 60.2
21 TraesCS7A01G336500 chr6A 97.143 70 2 0 278 347 455734181 455734250 7.400000e-23 119.0
22 TraesCS7A01G336500 chr5A 93.182 44 3 0 14 57 313883989 313883946 9.770000e-07 65.8
23 TraesCS7A01G336500 chr5D 91.111 45 4 0 14 58 321606494 321606450 1.260000e-05 62.1
24 TraesCS7A01G336500 chr5D 92.857 42 1 2 15 55 399991428 399991468 4.550000e-05 60.2
25 TraesCS7A01G336500 chr4A 93.023 43 1 2 15 56 662247744 662247703 1.260000e-05 62.1
26 TraesCS7A01G336500 chr3B 92.683 41 1 2 15 54 228695852 228695891 1.640000e-04 58.4
27 TraesCS7A01G336500 chr3B 88.000 50 4 2 7 54 727463229 727463278 1.640000e-04 58.4
28 TraesCS7A01G336500 chr1A 92.683 41 1 2 15 54 353632371 353632332 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G336500 chr7A 492264933 492269143 4210 False 3592.000 6013 100.00000 1 4211 2 chr7A.!!$F1 4210
1 TraesCS7A01G336500 chr7D 440975224 440978990 3766 False 1742.000 3692 90.30800 116 4138 3 chr7D.!!$F2 4022
2 TraesCS7A01G336500 chr7D 440592132 440595041 2909 False 976.250 1794 91.24000 54 3368 4 chr7D.!!$F1 3314
3 TraesCS7A01G336500 chr7B 458447369 458453604 6235 False 884.375 1949 90.28525 54 3888 8 chr7B.!!$F2 3834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.109964 GCAACGCACGAGCCATTTTA 60.110 50.0 0.0 0.0 37.52 1.52 F
459 485 0.593128 CAGTCCAGAGGCCGTTTTTG 59.407 55.0 0.0 0.0 0.00 2.44 F
1738 4257 0.471971 ATGCTAGGATGTACGGGGCT 60.472 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 4246 2.091994 ACTAGTCTACAGCCCCGTACAT 60.092 50.000 0.0 0.0 0.00 2.29 R
2080 4601 1.004200 TTCGAGGTTTTCCCGCCTC 60.004 57.895 0.0 0.0 45.78 4.70 R
3371 6043 0.761187 TGCACCTTGCTCTCAAGTCT 59.239 50.000 0.0 0.0 46.33 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.908825 TGAAGTTTATGATTTTTGTCTCCCG 58.091 36.000 0.00 0.00 0.00 5.14
27 28 6.488683 TGAAGTTTATGATTTTTGTCTCCCGT 59.511 34.615 0.00 0.00 0.00 5.28
28 29 6.894339 AGTTTATGATTTTTGTCTCCCGTT 57.106 33.333 0.00 0.00 0.00 4.44
29 30 6.677913 AGTTTATGATTTTTGTCTCCCGTTG 58.322 36.000 0.00 0.00 0.00 4.10
30 31 3.575965 ATGATTTTTGTCTCCCGTTGC 57.424 42.857 0.00 0.00 0.00 4.17
31 32 2.302260 TGATTTTTGTCTCCCGTTGCA 58.698 42.857 0.00 0.00 0.00 4.08
32 33 2.690497 TGATTTTTGTCTCCCGTTGCAA 59.310 40.909 0.00 0.00 0.00 4.08
33 34 2.570442 TTTTTGTCTCCCGTTGCAAC 57.430 45.000 19.89 19.89 0.00 4.17
43 44 3.947841 GTTGCAACGCACGAGCCA 61.948 61.111 14.90 0.00 38.71 4.75
44 45 2.977456 TTGCAACGCACGAGCCAT 60.977 55.556 0.00 0.00 38.71 4.40
45 46 2.551006 TTGCAACGCACGAGCCATT 61.551 52.632 0.00 0.00 38.71 3.16
46 47 2.069465 TTGCAACGCACGAGCCATTT 62.069 50.000 0.00 0.00 38.71 2.32
47 48 1.371635 GCAACGCACGAGCCATTTT 60.372 52.632 0.00 0.00 37.52 1.82
48 49 0.109964 GCAACGCACGAGCCATTTTA 60.110 50.000 0.00 0.00 37.52 1.52
49 50 1.602191 CAACGCACGAGCCATTTTAC 58.398 50.000 0.00 0.00 37.52 2.01
50 51 1.196808 CAACGCACGAGCCATTTTACT 59.803 47.619 0.00 0.00 37.52 2.24
51 52 2.373540 ACGCACGAGCCATTTTACTA 57.626 45.000 0.00 0.00 37.52 1.82
52 53 2.268298 ACGCACGAGCCATTTTACTAG 58.732 47.619 0.00 0.00 37.52 2.57
53 54 2.268298 CGCACGAGCCATTTTACTAGT 58.732 47.619 0.00 0.00 37.52 2.57
54 55 3.119388 ACGCACGAGCCATTTTACTAGTA 60.119 43.478 0.00 0.00 37.52 1.82
55 56 4.049186 CGCACGAGCCATTTTACTAGTAT 58.951 43.478 2.79 0.00 37.52 2.12
56 57 5.217393 CGCACGAGCCATTTTACTAGTATA 58.783 41.667 2.79 0.00 37.52 1.47
57 58 5.688621 CGCACGAGCCATTTTACTAGTATAA 59.311 40.000 2.79 5.83 37.52 0.98
58 59 6.365247 CGCACGAGCCATTTTACTAGTATAAT 59.635 38.462 11.49 11.49 37.52 1.28
106 107 4.148348 CGTGTAAGGTGTTTCTCGAAGAAG 59.852 45.833 0.00 0.00 35.37 2.85
112 113 6.364945 AGGTGTTTCTCGAAGAAGAAAAAG 57.635 37.500 0.95 0.00 36.20 2.27
114 115 6.374613 AGGTGTTTCTCGAAGAAGAAAAAGTT 59.625 34.615 0.95 0.00 36.20 2.66
136 137 6.485648 AGTTAAAAAGTATCCTGGACACACAC 59.514 38.462 8.00 0.00 0.00 3.82
138 139 0.895530 AGTATCCTGGACACACACGG 59.104 55.000 8.00 0.00 0.00 4.94
148 149 2.295349 GGACACACACGGTTCTCTTAGA 59.705 50.000 0.00 0.00 0.00 2.10
195 196 3.569701 AGATCCAAGACGCACAAAACAAT 59.430 39.130 0.00 0.00 0.00 2.71
196 197 3.077229 TCCAAGACGCACAAAACAATG 57.923 42.857 0.00 0.00 0.00 2.82
197 198 2.425312 TCCAAGACGCACAAAACAATGT 59.575 40.909 0.00 0.00 0.00 2.71
198 199 3.119316 TCCAAGACGCACAAAACAATGTT 60.119 39.130 0.00 0.00 0.00 2.71
199 200 4.096532 TCCAAGACGCACAAAACAATGTTA 59.903 37.500 0.00 0.00 0.00 2.41
200 201 4.440758 CCAAGACGCACAAAACAATGTTAG 59.559 41.667 0.00 0.00 0.00 2.34
201 202 5.270083 CAAGACGCACAAAACAATGTTAGA 58.730 37.500 0.00 0.00 0.00 2.10
202 203 5.493133 AGACGCACAAAACAATGTTAGAA 57.507 34.783 0.00 0.00 0.00 2.10
203 204 5.270853 AGACGCACAAAACAATGTTAGAAC 58.729 37.500 0.00 0.00 0.00 3.01
204 205 4.356289 ACGCACAAAACAATGTTAGAACC 58.644 39.130 0.00 0.00 0.00 3.62
205 206 3.733727 CGCACAAAACAATGTTAGAACCC 59.266 43.478 0.00 0.00 0.00 4.11
206 207 4.055360 GCACAAAACAATGTTAGAACCCC 58.945 43.478 0.00 0.00 0.00 4.95
207 208 4.627058 CACAAAACAATGTTAGAACCCCC 58.373 43.478 0.00 0.00 0.00 5.40
380 405 4.147449 CGCCTCCGAGCCATCACA 62.147 66.667 0.00 0.00 36.29 3.58
421 447 4.211794 CACAGCCAGCATTAAACAAAAAGG 59.788 41.667 0.00 0.00 0.00 3.11
422 448 3.187022 CAGCCAGCATTAAACAAAAAGGC 59.813 43.478 0.00 0.00 39.82 4.35
423 449 3.137533 GCCAGCATTAAACAAAAAGGCA 58.862 40.909 0.00 0.00 39.35 4.75
424 450 3.563390 GCCAGCATTAAACAAAAAGGCAA 59.437 39.130 0.00 0.00 39.35 4.52
425 451 4.036144 GCCAGCATTAAACAAAAAGGCAAA 59.964 37.500 0.00 0.00 39.35 3.68
426 452 5.449725 GCCAGCATTAAACAAAAAGGCAAAA 60.450 36.000 0.00 0.00 39.35 2.44
427 453 6.558909 CCAGCATTAAACAAAAAGGCAAAAA 58.441 32.000 0.00 0.00 36.15 1.94
428 454 6.692249 CCAGCATTAAACAAAAAGGCAAAAAG 59.308 34.615 0.00 0.00 36.15 2.27
429 455 6.692249 CAGCATTAAACAAAAAGGCAAAAAGG 59.308 34.615 0.00 0.00 36.15 3.11
430 456 5.458452 GCATTAAACAAAAAGGCAAAAAGGC 59.542 36.000 0.00 0.00 44.61 4.35
459 485 0.593128 CAGTCCAGAGGCCGTTTTTG 59.407 55.000 0.00 0.00 0.00 2.44
576 602 1.527311 GTCCGCGCAATTAAGAGATCC 59.473 52.381 8.75 0.00 0.00 3.36
1016 1213 4.451150 GATGGACCCGCACTCGCA 62.451 66.667 0.00 0.00 38.40 5.10
1017 1214 4.760047 ATGGACCCGCACTCGCAC 62.760 66.667 0.00 0.00 38.40 5.34
1028 1225 4.767841 CTCGCACTCGCACTCGCT 62.768 66.667 0.00 0.00 38.40 4.93
1467 1676 4.532314 ACAGGTTACTAGTAACTGCCAC 57.468 45.455 33.70 21.83 43.58 5.01
1474 1683 3.780626 ACTAGTAACTGCCACTCTCCTT 58.219 45.455 0.00 0.00 0.00 3.36
1475 1684 3.764972 ACTAGTAACTGCCACTCTCCTTC 59.235 47.826 0.00 0.00 0.00 3.46
1476 1685 2.896039 AGTAACTGCCACTCTCCTTCT 58.104 47.619 0.00 0.00 0.00 2.85
1477 1686 4.048970 AGTAACTGCCACTCTCCTTCTA 57.951 45.455 0.00 0.00 0.00 2.10
1478 1687 3.764972 AGTAACTGCCACTCTCCTTCTAC 59.235 47.826 0.00 0.00 0.00 2.59
1479 1688 2.614134 ACTGCCACTCTCCTTCTACT 57.386 50.000 0.00 0.00 0.00 2.57
1480 1689 3.741245 ACTGCCACTCTCCTTCTACTA 57.259 47.619 0.00 0.00 0.00 1.82
1481 1690 3.626930 ACTGCCACTCTCCTTCTACTAG 58.373 50.000 0.00 0.00 0.00 2.57
1482 1691 3.010808 ACTGCCACTCTCCTTCTACTAGT 59.989 47.826 0.00 0.00 0.00 2.57
1552 4017 3.748863 CCTGTTCATGAGAGGGACG 57.251 57.895 12.99 0.00 0.00 4.79
1738 4257 0.471971 ATGCTAGGATGTACGGGGCT 60.472 55.000 0.00 0.00 0.00 5.19
1817 4336 4.337555 CCACCATGGATCTCAGATTGAAAC 59.662 45.833 21.47 0.00 40.96 2.78
1862 4382 1.197721 CTCCTGTGATTCAAACGGCAC 59.802 52.381 0.00 0.00 0.00 5.01
1914 4434 6.353404 TGATCCCTTGTTATATGCGTATGA 57.647 37.500 8.77 0.00 0.00 2.15
2250 4882 5.070001 TGTTGGTTCTTAGGGAAAGACATG 58.930 41.667 0.00 0.00 44.02 3.21
2270 4902 1.786579 GAAAGCACAAATGTGGCGTTC 59.213 47.619 14.85 14.85 45.72 3.95
2291 4923 4.543689 TCCGACTCCACCTTATTATGTCT 58.456 43.478 0.00 0.00 0.00 3.41
2376 5040 5.703592 TGTCGGCTAATCAAGTTGTTTATGT 59.296 36.000 2.11 0.00 0.00 2.29
2377 5041 6.205853 TGTCGGCTAATCAAGTTGTTTATGTT 59.794 34.615 2.11 0.00 0.00 2.71
2378 5042 7.081976 GTCGGCTAATCAAGTTGTTTATGTTT 58.918 34.615 2.11 0.00 0.00 2.83
2379 5043 7.270579 GTCGGCTAATCAAGTTGTTTATGTTTC 59.729 37.037 2.11 0.00 0.00 2.78
2380 5044 6.526674 CGGCTAATCAAGTTGTTTATGTTTCC 59.473 38.462 2.11 2.30 0.00 3.13
2381 5045 6.811665 GGCTAATCAAGTTGTTTATGTTTCCC 59.188 38.462 2.11 0.00 0.00 3.97
2382 5046 6.526674 GCTAATCAAGTTGTTTATGTTTCCCG 59.473 38.462 2.11 0.00 0.00 5.14
2383 5047 4.231718 TCAAGTTGTTTATGTTTCCCGC 57.768 40.909 2.11 0.00 0.00 6.13
2384 5048 3.632604 TCAAGTTGTTTATGTTTCCCGCA 59.367 39.130 2.11 0.00 0.00 5.69
2385 5049 4.098044 TCAAGTTGTTTATGTTTCCCGCAA 59.902 37.500 2.11 0.00 0.00 4.85
2386 5050 4.657436 AGTTGTTTATGTTTCCCGCAAA 57.343 36.364 0.00 0.00 0.00 3.68
2387 5051 5.012328 AGTTGTTTATGTTTCCCGCAAAA 57.988 34.783 0.00 0.00 0.00 2.44
2388 5052 5.420409 AGTTGTTTATGTTTCCCGCAAAAA 58.580 33.333 0.00 0.00 0.00 1.94
2431 5095 9.314321 CACCAGAGTTAATACTAAACGATTGAT 57.686 33.333 0.00 0.00 33.84 2.57
2555 5225 6.828273 TGAAGAGAAGAACAATGAAAAGGTCA 59.172 34.615 0.00 0.00 41.67 4.02
2710 5380 1.250328 TGGATGCTCCAAAAGTGCTG 58.750 50.000 2.78 0.00 45.00 4.41
2805 5475 4.142881 GGTAAATGTCTTTCTCGGAACTGC 60.143 45.833 0.00 0.00 0.00 4.40
2818 5488 1.135575 GGAACTGCGAAATCTTGGCTG 60.136 52.381 0.00 0.06 38.81 4.85
2901 5571 5.041191 AGTTGGCTGATCCACTTATTAGG 57.959 43.478 0.00 0.00 46.55 2.69
2918 5588 5.559148 ATTAGGCTTGAGACATTAGGGAG 57.441 43.478 0.00 0.00 0.00 4.30
2957 5627 5.649831 AGCTATTAGAGTTTGGCCAAAAGAG 59.350 40.000 31.92 21.99 31.33 2.85
3054 5724 1.572956 TTGCAAGCGCGACTTATGCA 61.573 50.000 12.10 16.95 42.97 3.96
3149 5819 1.875576 CGATGTTCTATCAGCCCCAGC 60.876 57.143 0.00 0.00 40.32 4.85
3150 5820 0.475906 ATGTTCTATCAGCCCCAGCC 59.524 55.000 0.00 0.00 41.25 4.85
3151 5821 1.149401 GTTCTATCAGCCCCAGCCC 59.851 63.158 0.00 0.00 41.25 5.19
3152 5822 1.004758 TTCTATCAGCCCCAGCCCT 59.995 57.895 0.00 0.00 41.25 5.19
3153 5823 0.267658 TTCTATCAGCCCCAGCCCTA 59.732 55.000 0.00 0.00 41.25 3.53
3154 5824 0.178921 TCTATCAGCCCCAGCCCTAG 60.179 60.000 0.00 0.00 41.25 3.02
3200 5870 2.032681 GGGTCGTGCTGGAGCTTT 59.967 61.111 0.00 0.00 42.66 3.51
3201 5871 1.295423 GGGTCGTGCTGGAGCTTTA 59.705 57.895 0.00 0.00 42.66 1.85
3268 5938 6.415798 ACAAATGTTTTTGCCTGTTTGTAC 57.584 33.333 0.00 0.00 45.01 2.90
3273 5943 3.701532 TTTTGCCTGTTTGTACTTCCG 57.298 42.857 0.00 0.00 0.00 4.30
3280 5950 4.612939 GCCTGTTTGTACTTCCGTTGAATC 60.613 45.833 0.00 0.00 0.00 2.52
3283 5953 6.425721 CCTGTTTGTACTTCCGTTGAATCTTA 59.574 38.462 0.00 0.00 0.00 2.10
3284 5954 7.041644 CCTGTTTGTACTTCCGTTGAATCTTAA 60.042 37.037 0.00 0.00 0.00 1.85
3313 5983 2.108700 GTGTGTTGTTAAGCTGCGTTG 58.891 47.619 0.00 0.00 0.00 4.10
3374 6046 2.358737 CCCTGTGGGCGTTGAGAC 60.359 66.667 0.00 0.00 35.35 3.36
3375 6047 2.743718 CCTGTGGGCGTTGAGACT 59.256 61.111 0.00 0.00 0.00 3.24
3477 6151 1.555075 GGATGGTTCACCTACAGCAGA 59.445 52.381 0.00 0.00 36.82 4.26
3493 6167 5.189180 ACAGCAGACAACTTCTTCTTTTCT 58.811 37.500 0.00 0.00 28.96 2.52
3684 6375 4.722700 CTGGGGCCGACTTGGGTG 62.723 72.222 0.00 0.00 38.63 4.61
3959 6651 3.062466 TGGGAGAGCAGACGACCG 61.062 66.667 0.00 0.00 0.00 4.79
3988 6680 2.678934 AGCTCTTCCCGCACGGTA 60.679 61.111 8.49 0.00 0.00 4.02
4122 6814 5.450274 GCAAACCAATGAATGCAAAAACCTT 60.450 36.000 0.00 0.00 38.63 3.50
4125 6817 3.058085 CCAATGAATGCAAAAACCTTGCC 60.058 43.478 6.98 0.00 44.32 4.52
4165 6857 5.559148 AAGGGAATAATGCTCTCTACAGG 57.441 43.478 0.00 0.00 0.00 4.00
4166 6858 4.820775 AGGGAATAATGCTCTCTACAGGA 58.179 43.478 0.00 0.00 0.00 3.86
4167 6859 5.410602 AGGGAATAATGCTCTCTACAGGAT 58.589 41.667 0.00 0.00 0.00 3.24
4168 6860 5.848921 AGGGAATAATGCTCTCTACAGGATT 59.151 40.000 0.00 0.00 38.02 3.01
4169 6861 5.936956 GGGAATAATGCTCTCTACAGGATTG 59.063 44.000 0.00 0.00 35.41 2.67
4170 6862 6.239714 GGGAATAATGCTCTCTACAGGATTGA 60.240 42.308 0.00 0.00 35.41 2.57
4171 6863 7.220030 GGAATAATGCTCTCTACAGGATTGAA 58.780 38.462 0.00 0.00 35.41 2.69
4172 6864 7.172361 GGAATAATGCTCTCTACAGGATTGAAC 59.828 40.741 0.00 0.00 35.41 3.18
4173 6865 5.690464 AATGCTCTCTACAGGATTGAACT 57.310 39.130 0.00 0.00 33.50 3.01
4174 6866 4.727507 TGCTCTCTACAGGATTGAACTC 57.272 45.455 0.00 0.00 0.00 3.01
4175 6867 4.089361 TGCTCTCTACAGGATTGAACTCA 58.911 43.478 0.00 0.00 0.00 3.41
4176 6868 4.081972 TGCTCTCTACAGGATTGAACTCAC 60.082 45.833 0.00 0.00 0.00 3.51
4177 6869 4.679372 GCTCTCTACAGGATTGAACTCACC 60.679 50.000 0.00 0.00 0.00 4.02
4178 6870 4.416516 TCTCTACAGGATTGAACTCACCA 58.583 43.478 0.00 0.00 0.00 4.17
4179 6871 4.220821 TCTCTACAGGATTGAACTCACCAC 59.779 45.833 0.00 0.00 0.00 4.16
4180 6872 3.901222 TCTACAGGATTGAACTCACCACA 59.099 43.478 0.00 0.00 0.00 4.17
4181 6873 2.851195 ACAGGATTGAACTCACCACAC 58.149 47.619 0.00 0.00 0.00 3.82
4182 6874 2.154462 CAGGATTGAACTCACCACACC 58.846 52.381 0.00 0.00 0.00 4.16
4183 6875 1.156736 GGATTGAACTCACCACACCG 58.843 55.000 0.00 0.00 0.00 4.94
4184 6876 1.542547 GGATTGAACTCACCACACCGT 60.543 52.381 0.00 0.00 0.00 4.83
4185 6877 1.531149 GATTGAACTCACCACACCGTG 59.469 52.381 0.00 0.00 34.93 4.94
4186 6878 0.250793 TTGAACTCACCACACCGTGT 59.749 50.000 0.00 0.00 35.18 4.49
4197 6889 2.102070 ACACCGTGTGAACAAACAGA 57.898 45.000 2.57 0.00 36.96 3.41
4198 6890 2.639065 ACACCGTGTGAACAAACAGAT 58.361 42.857 2.57 0.00 36.96 2.90
4199 6891 2.354510 ACACCGTGTGAACAAACAGATG 59.645 45.455 2.57 0.00 36.96 2.90
4200 6892 1.333619 ACCGTGTGAACAAACAGATGC 59.666 47.619 0.00 0.00 0.00 3.91
4201 6893 1.334960 CCGTGTGAACAAACAGATGCC 60.335 52.381 0.00 0.00 0.00 4.40
4202 6894 1.333308 CGTGTGAACAAACAGATGCCA 59.667 47.619 0.00 0.00 0.00 4.92
4203 6895 2.602933 CGTGTGAACAAACAGATGCCAG 60.603 50.000 0.00 0.00 0.00 4.85
4204 6896 1.337703 TGTGAACAAACAGATGCCAGC 59.662 47.619 0.00 0.00 0.00 4.85
4205 6897 1.337703 GTGAACAAACAGATGCCAGCA 59.662 47.619 0.00 0.00 0.00 4.41
4206 6898 1.610038 TGAACAAACAGATGCCAGCAG 59.390 47.619 0.00 0.00 0.00 4.24
4207 6899 0.316204 AACAAACAGATGCCAGCAGC 59.684 50.000 0.00 0.00 44.14 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.028938 CGGGAGACAAAAATCATAAACTTCAAT 58.971 33.333 0.00 0.00 0.00 2.57
1 2 7.013846 ACGGGAGACAAAAATCATAAACTTCAA 59.986 33.333 0.00 0.00 0.00 2.69
3 4 6.909909 ACGGGAGACAAAAATCATAAACTTC 58.090 36.000 0.00 0.00 0.00 3.01
4 5 6.894339 ACGGGAGACAAAAATCATAAACTT 57.106 33.333 0.00 0.00 0.00 2.66
5 6 6.677913 CAACGGGAGACAAAAATCATAAACT 58.322 36.000 0.00 0.00 0.00 2.66
6 7 5.344933 GCAACGGGAGACAAAAATCATAAAC 59.655 40.000 0.00 0.00 0.00 2.01
7 8 5.010112 TGCAACGGGAGACAAAAATCATAAA 59.990 36.000 0.00 0.00 0.00 1.40
8 9 4.520874 TGCAACGGGAGACAAAAATCATAA 59.479 37.500 0.00 0.00 0.00 1.90
9 10 4.075682 TGCAACGGGAGACAAAAATCATA 58.924 39.130 0.00 0.00 0.00 2.15
10 11 2.890311 TGCAACGGGAGACAAAAATCAT 59.110 40.909 0.00 0.00 0.00 2.45
11 12 2.302260 TGCAACGGGAGACAAAAATCA 58.698 42.857 0.00 0.00 0.00 2.57
12 13 3.049912 GTTGCAACGGGAGACAAAAATC 58.950 45.455 14.90 0.00 0.00 2.17
13 14 3.092334 GTTGCAACGGGAGACAAAAAT 57.908 42.857 14.90 0.00 0.00 1.82
14 15 2.570442 GTTGCAACGGGAGACAAAAA 57.430 45.000 14.90 0.00 0.00 1.94
26 27 2.731587 AATGGCTCGTGCGTTGCAAC 62.732 55.000 19.89 19.89 41.47 4.17
27 28 2.069465 AAATGGCTCGTGCGTTGCAA 62.069 50.000 0.00 0.00 41.47 4.08
28 29 2.069465 AAAATGGCTCGTGCGTTGCA 62.069 50.000 3.02 0.00 40.82 4.08
29 30 0.109964 TAAAATGGCTCGTGCGTTGC 60.110 50.000 3.02 0.00 40.82 4.17
30 31 1.196808 AGTAAAATGGCTCGTGCGTTG 59.803 47.619 3.02 0.00 40.82 4.10
31 32 1.519408 AGTAAAATGGCTCGTGCGTT 58.481 45.000 3.02 0.00 40.82 4.84
32 33 2.268298 CTAGTAAAATGGCTCGTGCGT 58.732 47.619 3.02 0.00 40.82 5.24
33 34 2.268298 ACTAGTAAAATGGCTCGTGCG 58.732 47.619 3.02 0.00 40.82 5.34
34 35 7.653767 ATTATACTAGTAAAATGGCTCGTGC 57.346 36.000 6.70 0.00 38.76 5.34
50 51 8.956426 GCATTTGCCCAGCTTTATATTATACTA 58.044 33.333 0.00 0.00 34.31 1.82
51 52 7.830739 GCATTTGCCCAGCTTTATATTATACT 58.169 34.615 0.00 0.00 34.31 2.12
77 78 4.317839 CGAGAAACACCTTACACGAAACAG 60.318 45.833 0.00 0.00 0.00 3.16
136 137 1.334779 CGGCGGTATCTAAGAGAACCG 60.335 57.143 19.86 19.86 44.26 4.44
138 139 1.066605 TGCGGCGGTATCTAAGAGAAC 59.933 52.381 9.78 0.00 0.00 3.01
148 149 0.753262 AAGAGAAGATGCGGCGGTAT 59.247 50.000 9.78 0.00 0.00 2.73
213 214 6.871492 ACTGGTTCGAACATTGTTTTCTTTTT 59.129 30.769 28.24 0.00 0.00 1.94
214 215 6.310224 CACTGGTTCGAACATTGTTTTCTTTT 59.690 34.615 28.24 0.00 0.00 2.27
215 216 5.804979 CACTGGTTCGAACATTGTTTTCTTT 59.195 36.000 28.24 0.00 0.00 2.52
216 217 5.339990 CACTGGTTCGAACATTGTTTTCTT 58.660 37.500 28.24 0.00 0.00 2.52
217 218 4.202010 CCACTGGTTCGAACATTGTTTTCT 60.202 41.667 28.24 0.59 0.00 2.52
218 219 4.041723 CCACTGGTTCGAACATTGTTTTC 58.958 43.478 28.24 9.94 0.00 2.29
219 220 3.181480 CCCACTGGTTCGAACATTGTTTT 60.181 43.478 28.24 3.59 0.00 2.43
220 221 2.360801 CCCACTGGTTCGAACATTGTTT 59.639 45.455 28.24 4.63 0.00 2.83
221 222 1.953686 CCCACTGGTTCGAACATTGTT 59.046 47.619 28.24 0.63 0.00 2.83
222 223 1.604604 CCCACTGGTTCGAACATTGT 58.395 50.000 28.24 19.41 0.00 2.71
223 224 0.240945 GCCCACTGGTTCGAACATTG 59.759 55.000 28.24 19.93 0.00 2.82
224 225 1.234615 CGCCCACTGGTTCGAACATT 61.235 55.000 28.24 9.92 0.00 2.71
225 226 1.671054 CGCCCACTGGTTCGAACAT 60.671 57.895 28.24 11.48 0.00 2.71
230 231 3.345808 CACACGCCCACTGGTTCG 61.346 66.667 5.67 5.67 0.00 3.95
380 405 1.057851 TGTCTCGGGTTTGGGTCCTT 61.058 55.000 0.00 0.00 0.00 3.36
421 447 0.315251 GGACTGGACTGCCTTTTTGC 59.685 55.000 0.00 0.00 34.31 3.68
422 448 1.610522 CTGGACTGGACTGCCTTTTTG 59.389 52.381 0.00 0.00 34.31 2.44
423 449 1.215423 ACTGGACTGGACTGCCTTTTT 59.785 47.619 0.00 0.00 34.31 1.94
424 450 0.846693 ACTGGACTGGACTGCCTTTT 59.153 50.000 0.00 0.00 34.31 2.27
425 451 0.398318 GACTGGACTGGACTGCCTTT 59.602 55.000 0.00 0.00 34.31 3.11
426 452 1.484444 GGACTGGACTGGACTGCCTT 61.484 60.000 0.00 0.00 34.31 4.35
427 453 1.915769 GGACTGGACTGGACTGCCT 60.916 63.158 0.00 0.00 34.31 4.75
428 454 2.177594 CTGGACTGGACTGGACTGCC 62.178 65.000 0.00 0.00 0.00 4.85
429 455 1.188219 TCTGGACTGGACTGGACTGC 61.188 60.000 0.00 0.00 0.00 4.40
430 456 0.894141 CTCTGGACTGGACTGGACTG 59.106 60.000 0.00 0.00 0.00 3.51
431 457 0.252012 CCTCTGGACTGGACTGGACT 60.252 60.000 0.00 0.00 0.00 3.85
432 458 1.893919 GCCTCTGGACTGGACTGGAC 61.894 65.000 0.00 0.00 0.00 4.02
433 459 1.610673 GCCTCTGGACTGGACTGGA 60.611 63.158 0.00 0.00 0.00 3.86
434 460 2.664081 GGCCTCTGGACTGGACTGG 61.664 68.421 0.00 0.00 0.00 4.00
515 541 1.619654 TGGAAGCTGGGTGTGAATTG 58.380 50.000 0.00 0.00 0.00 2.32
516 542 1.963515 GTTGGAAGCTGGGTGTGAATT 59.036 47.619 0.00 0.00 0.00 2.17
517 543 1.620822 GTTGGAAGCTGGGTGTGAAT 58.379 50.000 0.00 0.00 0.00 2.57
518 544 0.467290 GGTTGGAAGCTGGGTGTGAA 60.467 55.000 0.00 0.00 0.00 3.18
519 545 1.150536 GGTTGGAAGCTGGGTGTGA 59.849 57.895 0.00 0.00 0.00 3.58
520 546 0.540365 ATGGTTGGAAGCTGGGTGTG 60.540 55.000 0.00 0.00 0.00 3.82
521 547 0.251341 GATGGTTGGAAGCTGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
964 991 0.875311 AGGGGGTTATAGAGAGGGGG 59.125 60.000 0.00 0.00 0.00 5.40
965 992 2.031495 CAGGGGGTTATAGAGAGGGG 57.969 60.000 0.00 0.00 0.00 4.79
966 993 1.353091 GCAGGGGGTTATAGAGAGGG 58.647 60.000 0.00 0.00 0.00 4.30
1045 1254 4.112341 GTCGGGGTCGTCGTCAGG 62.112 72.222 0.00 0.00 37.69 3.86
1467 1676 9.359653 AGTAGTAGTAGACTAGTAGAAGGAGAG 57.640 40.741 3.59 0.00 41.69 3.20
1706 4202 4.391405 TCCTAGCATCACTATGTGTGTG 57.609 45.455 0.00 0.00 46.27 3.82
1727 4246 2.091994 ACTAGTCTACAGCCCCGTACAT 60.092 50.000 0.00 0.00 0.00 2.29
1738 4257 7.875327 TGAACATGTATGCTACTAGTCTACA 57.125 36.000 0.00 4.44 0.00 2.74
1862 4382 3.745975 TGAACACGGCAGAGAATTACAAG 59.254 43.478 0.00 0.00 0.00 3.16
1914 4434 5.012664 GGTTCCCTTTCACCCAAAATTACAT 59.987 40.000 0.00 0.00 0.00 2.29
2080 4601 1.004200 TTCGAGGTTTTCCCGCCTC 60.004 57.895 0.00 0.00 45.78 4.70
2250 4882 1.786579 GAACGCCACATTTGTGCTTTC 59.213 47.619 5.15 6.82 44.34 2.62
2270 4902 4.939052 AGACATAATAAGGTGGAGTCGG 57.061 45.455 0.00 0.00 0.00 4.79
2338 4970 3.900941 AGCCGACATAAGCAAAAACTTG 58.099 40.909 0.00 0.00 0.00 3.16
2386 5050 5.491982 TGGTGCATAAACAACTTGGTTTTT 58.508 33.333 0.00 0.00 41.07 1.94
2387 5051 5.091261 TGGTGCATAAACAACTTGGTTTT 57.909 34.783 0.00 0.00 41.07 2.43
2388 5052 4.404073 TCTGGTGCATAAACAACTTGGTTT 59.596 37.500 0.00 0.00 43.08 3.27
2389 5053 3.957497 TCTGGTGCATAAACAACTTGGTT 59.043 39.130 0.00 0.00 0.00 3.67
2390 5054 3.561143 TCTGGTGCATAAACAACTTGGT 58.439 40.909 0.00 0.00 0.00 3.67
2391 5055 3.569701 ACTCTGGTGCATAAACAACTTGG 59.430 43.478 0.00 0.00 0.00 3.61
2392 5056 4.836125 ACTCTGGTGCATAAACAACTTG 57.164 40.909 0.00 0.00 0.00 3.16
2393 5057 6.952773 TTAACTCTGGTGCATAAACAACTT 57.047 33.333 0.00 0.00 0.00 2.66
2394 5058 7.883311 AGTATTAACTCTGGTGCATAAACAACT 59.117 33.333 0.00 0.00 0.00 3.16
2395 5059 8.040716 AGTATTAACTCTGGTGCATAAACAAC 57.959 34.615 0.00 0.00 0.00 3.32
2396 5060 9.727859 TTAGTATTAACTCTGGTGCATAAACAA 57.272 29.630 0.00 0.00 37.15 2.83
2397 5061 9.727859 TTTAGTATTAACTCTGGTGCATAAACA 57.272 29.630 0.00 0.00 37.15 2.83
2398 5062 9.983804 GTTTAGTATTAACTCTGGTGCATAAAC 57.016 33.333 0.00 0.00 37.15 2.01
2399 5063 8.875803 CGTTTAGTATTAACTCTGGTGCATAAA 58.124 33.333 0.00 0.00 37.15 1.40
2400 5064 8.252417 TCGTTTAGTATTAACTCTGGTGCATAA 58.748 33.333 0.00 0.00 37.15 1.90
2401 5065 7.774134 TCGTTTAGTATTAACTCTGGTGCATA 58.226 34.615 0.00 0.00 37.15 3.14
2402 5066 6.636705 TCGTTTAGTATTAACTCTGGTGCAT 58.363 36.000 0.00 0.00 37.15 3.96
2403 5067 6.028146 TCGTTTAGTATTAACTCTGGTGCA 57.972 37.500 0.00 0.00 37.15 4.57
2404 5068 7.277098 TCAATCGTTTAGTATTAACTCTGGTGC 59.723 37.037 0.00 0.00 37.15 5.01
2478 5148 4.455877 ACACAAGCATAAGAAAGGCTACAC 59.544 41.667 0.00 0.00 36.76 2.90
2710 5380 3.791973 AGAGATTCCACGATGTCAGAC 57.208 47.619 0.00 0.00 0.00 3.51
2805 5475 4.222114 GAGAAACAACAGCCAAGATTTCG 58.778 43.478 0.00 0.00 32.57 3.46
2818 5488 5.813080 ACCAAACTACAGTGAGAAACAAC 57.187 39.130 0.00 0.00 0.00 3.32
2901 5571 1.210478 TGCCTCCCTAATGTCTCAAGC 59.790 52.381 0.00 0.00 0.00 4.01
2918 5588 2.083835 TAGCTCGCTTACGGGATGCC 62.084 60.000 0.00 0.00 44.96 4.40
2957 5627 5.968528 AGAGATATCCACTATTCGACCAC 57.031 43.478 0.00 0.00 0.00 4.16
3054 5724 5.407407 TCGAAGCTATCTCCTTCTTTTGT 57.593 39.130 0.00 0.00 37.22 2.83
3268 5938 8.826546 CATGTAATGTTAAGATTCAACGGAAG 57.173 34.615 0.34 0.00 40.20 3.46
3313 5983 7.962964 TGCATATAAGTATTTACAGGCTCAC 57.037 36.000 0.00 0.00 0.00 3.51
3369 6041 1.270518 GCACCTTGCTCTCAAGTCTCA 60.271 52.381 4.60 0.00 46.33 3.27
3370 6042 1.270518 TGCACCTTGCTCTCAAGTCTC 60.271 52.381 0.00 0.00 46.33 3.36
3371 6043 0.761187 TGCACCTTGCTCTCAAGTCT 59.239 50.000 0.00 0.00 46.33 3.24
3372 6044 1.534595 CTTGCACCTTGCTCTCAAGTC 59.465 52.381 0.00 0.00 46.33 3.01
3373 6045 1.133976 ACTTGCACCTTGCTCTCAAGT 60.134 47.619 0.00 0.00 46.33 3.16
3374 6046 1.602311 ACTTGCACCTTGCTCTCAAG 58.398 50.000 0.00 0.00 45.31 3.02
3375 6047 1.949525 GAACTTGCACCTTGCTCTCAA 59.050 47.619 0.00 0.00 45.31 3.02
3477 6151 3.810386 GCTCGGAGAAAAGAAGAAGTTGT 59.190 43.478 9.69 0.00 34.09 3.32
3493 6167 1.203287 CAGACATTCACTCTGCTCGGA 59.797 52.381 0.00 0.00 0.00 4.55
3536 6210 1.153647 CAGCGGCTGTACGATTCCA 60.154 57.895 21.60 0.00 35.47 3.53
3744 6436 0.241481 GAGACCGGCATCTCGATACC 59.759 60.000 0.00 0.00 36.05 2.73
3931 6623 3.746949 CTCTCCCACCGATGCAGGC 62.747 68.421 0.00 0.00 33.69 4.85
3938 6630 3.062466 CGTCTGCTCTCCCACCGA 61.062 66.667 0.00 0.00 0.00 4.69
3959 6651 3.397613 AAGAGCTCCGGCCAGCATC 62.398 63.158 16.78 10.93 42.40 3.91
4041 6733 3.764466 CCAGGAGCTCGAACGGCT 61.764 66.667 7.83 0.00 43.26 5.52
4139 6831 8.160106 CCTGTAGAGAGCATTATTCCCTTTTAT 58.840 37.037 0.00 0.00 0.00 1.40
4140 6832 7.347222 TCCTGTAGAGAGCATTATTCCCTTTTA 59.653 37.037 0.00 0.00 0.00 1.52
4141 6833 6.158695 TCCTGTAGAGAGCATTATTCCCTTTT 59.841 38.462 0.00 0.00 0.00 2.27
4142 6834 5.667626 TCCTGTAGAGAGCATTATTCCCTTT 59.332 40.000 0.00 0.00 0.00 3.11
4143 6835 5.219739 TCCTGTAGAGAGCATTATTCCCTT 58.780 41.667 0.00 0.00 0.00 3.95
4144 6836 4.820775 TCCTGTAGAGAGCATTATTCCCT 58.179 43.478 0.00 0.00 0.00 4.20
4145 6837 5.753721 ATCCTGTAGAGAGCATTATTCCC 57.246 43.478 0.00 0.00 0.00 3.97
4146 6838 6.763355 TCAATCCTGTAGAGAGCATTATTCC 58.237 40.000 0.00 0.00 0.00 3.01
4147 6839 7.930865 AGTTCAATCCTGTAGAGAGCATTATTC 59.069 37.037 0.00 0.00 0.00 1.75
4148 6840 7.800092 AGTTCAATCCTGTAGAGAGCATTATT 58.200 34.615 0.00 0.00 0.00 1.40
4149 6841 7.070447 TGAGTTCAATCCTGTAGAGAGCATTAT 59.930 37.037 0.00 0.00 0.00 1.28
4150 6842 6.381133 TGAGTTCAATCCTGTAGAGAGCATTA 59.619 38.462 0.00 0.00 0.00 1.90
4151 6843 5.188555 TGAGTTCAATCCTGTAGAGAGCATT 59.811 40.000 0.00 0.00 0.00 3.56
4152 6844 4.713814 TGAGTTCAATCCTGTAGAGAGCAT 59.286 41.667 0.00 0.00 0.00 3.79
4153 6845 4.081972 GTGAGTTCAATCCTGTAGAGAGCA 60.082 45.833 0.00 0.00 0.00 4.26
4154 6846 4.429108 GTGAGTTCAATCCTGTAGAGAGC 58.571 47.826 0.00 0.00 0.00 4.09
4155 6847 4.464244 TGGTGAGTTCAATCCTGTAGAGAG 59.536 45.833 0.00 0.00 0.00 3.20
4156 6848 4.220821 GTGGTGAGTTCAATCCTGTAGAGA 59.779 45.833 0.00 0.00 0.00 3.10
4157 6849 4.021104 TGTGGTGAGTTCAATCCTGTAGAG 60.021 45.833 0.00 0.00 0.00 2.43
4158 6850 3.901222 TGTGGTGAGTTCAATCCTGTAGA 59.099 43.478 0.00 0.00 0.00 2.59
4159 6851 3.997021 GTGTGGTGAGTTCAATCCTGTAG 59.003 47.826 0.00 0.00 0.00 2.74
4160 6852 3.244422 GGTGTGGTGAGTTCAATCCTGTA 60.244 47.826 0.00 0.00 0.00 2.74
4161 6853 2.487265 GGTGTGGTGAGTTCAATCCTGT 60.487 50.000 0.00 0.00 0.00 4.00
4162 6854 2.154462 GGTGTGGTGAGTTCAATCCTG 58.846 52.381 0.00 0.00 0.00 3.86
4163 6855 1.270839 CGGTGTGGTGAGTTCAATCCT 60.271 52.381 0.00 0.00 0.00 3.24
4164 6856 1.156736 CGGTGTGGTGAGTTCAATCC 58.843 55.000 0.00 0.00 0.00 3.01
4165 6857 1.531149 CACGGTGTGGTGAGTTCAATC 59.469 52.381 0.00 0.00 40.38 2.67
4166 6858 1.134220 ACACGGTGTGGTGAGTTCAAT 60.134 47.619 13.92 0.00 40.38 2.57
4167 6859 0.250793 ACACGGTGTGGTGAGTTCAA 59.749 50.000 13.92 0.00 40.38 2.69
4168 6860 0.461163 CACACGGTGTGGTGAGTTCA 60.461 55.000 29.07 0.00 44.27 3.18
4169 6861 2.307363 CACACGGTGTGGTGAGTTC 58.693 57.895 29.07 0.00 44.27 3.01
4170 6862 4.532490 CACACGGTGTGGTGAGTT 57.468 55.556 29.07 0.00 44.27 3.01
4178 6870 2.102070 TCTGTTTGTTCACACGGTGT 57.898 45.000 8.21 8.21 34.79 4.16
4179 6871 2.854424 GCATCTGTTTGTTCACACGGTG 60.854 50.000 6.58 6.58 34.45 4.94
4180 6872 1.333619 GCATCTGTTTGTTCACACGGT 59.666 47.619 0.00 0.00 0.00 4.83
4181 6873 1.334960 GGCATCTGTTTGTTCACACGG 60.335 52.381 0.00 0.00 0.00 4.94
4182 6874 1.333308 TGGCATCTGTTTGTTCACACG 59.667 47.619 0.00 0.00 0.00 4.49
4183 6875 2.859806 GCTGGCATCTGTTTGTTCACAC 60.860 50.000 0.00 0.00 0.00 3.82
4184 6876 1.337703 GCTGGCATCTGTTTGTTCACA 59.662 47.619 0.00 0.00 0.00 3.58
4185 6877 1.337703 TGCTGGCATCTGTTTGTTCAC 59.662 47.619 0.00 0.00 0.00 3.18
4186 6878 1.610038 CTGCTGGCATCTGTTTGTTCA 59.390 47.619 0.00 0.00 0.00 3.18
4187 6879 1.668047 GCTGCTGGCATCTGTTTGTTC 60.668 52.381 0.00 0.00 41.35 3.18
4188 6880 0.316204 GCTGCTGGCATCTGTTTGTT 59.684 50.000 0.00 0.00 41.35 2.83
4189 6881 1.962144 GCTGCTGGCATCTGTTTGT 59.038 52.632 0.00 0.00 41.35 2.83
4190 6882 4.883026 GCTGCTGGCATCTGTTTG 57.117 55.556 0.00 0.00 41.35 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.