Multiple sequence alignment - TraesCS7A01G336200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G336200 chr7A 100.000 3410 0 0 1 3410 491972788 491976197 0.000000e+00 6298
1 TraesCS7A01G336200 chr7D 85.080 2004 162 46 391 2328 440211575 440213507 0.000000e+00 1917
2 TraesCS7A01G336200 chr7D 80.906 508 56 26 2433 2918 440213666 440214154 2.500000e-96 363
3 TraesCS7A01G336200 chr7D 81.621 506 32 29 2945 3410 440214155 440214639 2.500000e-96 363
4 TraesCS7A01G336200 chr7B 87.266 1547 138 35 814 2328 458113934 458115453 0.000000e+00 1711
5 TraesCS7A01G336200 chr7B 82.910 591 37 30 2866 3410 458116073 458116645 1.110000e-129 473
6 TraesCS7A01G336200 chr7B 81.858 452 51 23 2441 2881 458115622 458116053 5.410000e-93 351
7 TraesCS7A01G336200 chr7B 77.812 329 46 15 136 454 458113266 458113577 9.720000e-41 178
8 TraesCS7A01G336200 chr1D 92.357 157 12 0 1300 1456 388962940 388963096 1.230000e-54 224
9 TraesCS7A01G336200 chr1D 72.894 546 122 21 1238 1776 450462719 450462193 7.570000e-37 165
10 TraesCS7A01G336200 chr6D 88.587 184 12 3 1407 1581 78490695 78490512 7.410000e-52 215
11 TraesCS7A01G336200 chr1B 74.878 410 87 12 1369 1776 617968269 617967874 4.520000e-39 172
12 TraesCS7A01G336200 chr3D 78.298 235 37 9 1370 1603 358177237 358177458 4.590000e-29 139
13 TraesCS7A01G336200 chr3A 74.852 338 69 10 1370 1705 477427895 477428218 4.590000e-29 139
14 TraesCS7A01G336200 chr3B 77.406 239 41 7 1370 1608 462866730 462866955 2.760000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G336200 chr7A 491972788 491976197 3409 False 6298.00 6298 100.000000 1 3410 1 chr7A.!!$F1 3409
1 TraesCS7A01G336200 chr7D 440211575 440214639 3064 False 881.00 1917 82.535667 391 3410 3 chr7D.!!$F1 3019
2 TraesCS7A01G336200 chr7B 458113266 458116645 3379 False 678.25 1711 82.461500 136 3410 4 chr7B.!!$F1 3274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 879 0.035056 CCCCTCCTTGTAGTTGCAGG 60.035 60.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 2835 0.036388 ACGTCGAGCAAACCATCCAT 60.036 50.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.730550 GTGACAGGCCCATTCTTTTG 57.269 50.000 0.00 0.00 0.00 2.44
20 21 0.968405 TGACAGGCCCATTCTTTTGC 59.032 50.000 0.00 0.00 0.00 3.68
21 22 0.968405 GACAGGCCCATTCTTTTGCA 59.032 50.000 0.00 0.00 0.00 4.08
22 23 0.971386 ACAGGCCCATTCTTTTGCAG 59.029 50.000 0.00 0.00 0.00 4.41
23 24 0.971386 CAGGCCCATTCTTTTGCAGT 59.029 50.000 0.00 0.00 0.00 4.40
24 25 1.345415 CAGGCCCATTCTTTTGCAGTT 59.655 47.619 0.00 0.00 0.00 3.16
25 26 1.345415 AGGCCCATTCTTTTGCAGTTG 59.655 47.619 0.00 0.00 0.00 3.16
26 27 1.344114 GGCCCATTCTTTTGCAGTTGA 59.656 47.619 0.00 0.00 0.00 3.18
27 28 2.027837 GGCCCATTCTTTTGCAGTTGAT 60.028 45.455 0.00 0.00 0.00 2.57
28 29 3.256558 GCCCATTCTTTTGCAGTTGATC 58.743 45.455 0.00 0.00 0.00 2.92
29 30 3.056322 GCCCATTCTTTTGCAGTTGATCT 60.056 43.478 0.00 0.00 0.00 2.75
30 31 4.491676 CCCATTCTTTTGCAGTTGATCTG 58.508 43.478 0.00 0.00 46.12 2.90
31 32 4.021719 CCCATTCTTTTGCAGTTGATCTGT 60.022 41.667 0.00 0.00 45.23 3.41
32 33 4.921515 CCATTCTTTTGCAGTTGATCTGTG 59.078 41.667 0.00 0.00 45.23 3.66
33 34 5.278610 CCATTCTTTTGCAGTTGATCTGTGA 60.279 40.000 0.00 0.00 45.23 3.58
34 35 6.387465 CATTCTTTTGCAGTTGATCTGTGAT 58.613 36.000 0.00 0.00 45.23 3.06
35 36 5.618056 TCTTTTGCAGTTGATCTGTGATC 57.382 39.130 0.00 0.98 45.23 2.92
36 37 5.065235 TCTTTTGCAGTTGATCTGTGATCA 58.935 37.500 6.19 6.19 45.23 2.92
37 38 5.532032 TCTTTTGCAGTTGATCTGTGATCAA 59.468 36.000 16.18 16.18 45.23 2.57
38 39 5.366829 TTTGCAGTTGATCTGTGATCAAG 57.633 39.130 19.39 12.06 45.23 3.02
39 40 2.745821 TGCAGTTGATCTGTGATCAAGC 59.254 45.455 19.39 19.15 45.23 4.01
40 41 3.008330 GCAGTTGATCTGTGATCAAGCT 58.992 45.455 19.39 16.24 45.23 3.74
41 42 3.181509 GCAGTTGATCTGTGATCAAGCTG 60.182 47.826 26.14 26.14 45.23 4.24
42 43 4.001652 CAGTTGATCTGTGATCAAGCTGT 58.998 43.478 24.43 12.19 38.54 4.40
43 44 4.093115 CAGTTGATCTGTGATCAAGCTGTC 59.907 45.833 24.43 15.28 38.54 3.51
44 45 3.257469 TGATCTGTGATCAAGCTGTCC 57.743 47.619 7.68 0.00 0.00 4.02
45 46 2.836372 TGATCTGTGATCAAGCTGTCCT 59.164 45.455 7.68 0.00 0.00 3.85
46 47 3.118847 TGATCTGTGATCAAGCTGTCCTC 60.119 47.826 7.68 0.00 0.00 3.71
47 48 2.533916 TCTGTGATCAAGCTGTCCTCT 58.466 47.619 0.00 0.00 0.00 3.69
48 49 2.233186 TCTGTGATCAAGCTGTCCTCTG 59.767 50.000 0.00 0.00 0.00 3.35
49 50 1.973515 TGTGATCAAGCTGTCCTCTGT 59.026 47.619 0.00 0.00 0.00 3.41
50 51 2.369860 TGTGATCAAGCTGTCCTCTGTT 59.630 45.455 0.00 0.00 0.00 3.16
51 52 3.181451 TGTGATCAAGCTGTCCTCTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
52 53 3.817647 GTGATCAAGCTGTCCTCTGTTTT 59.182 43.478 0.00 0.00 0.00 2.43
53 54 4.997395 GTGATCAAGCTGTCCTCTGTTTTA 59.003 41.667 0.00 0.00 0.00 1.52
54 55 4.997395 TGATCAAGCTGTCCTCTGTTTTAC 59.003 41.667 0.00 0.00 0.00 2.01
55 56 3.390135 TCAAGCTGTCCTCTGTTTTACG 58.610 45.455 0.00 0.00 0.00 3.18
56 57 2.457366 AGCTGTCCTCTGTTTTACGG 57.543 50.000 0.00 0.00 0.00 4.02
57 58 0.796927 GCTGTCCTCTGTTTTACGGC 59.203 55.000 0.00 0.00 37.10 5.68
58 59 1.439679 CTGTCCTCTGTTTTACGGCC 58.560 55.000 0.00 0.00 0.00 6.13
59 60 1.002087 CTGTCCTCTGTTTTACGGCCT 59.998 52.381 0.00 0.00 0.00 5.19
60 61 1.270625 TGTCCTCTGTTTTACGGCCTG 60.271 52.381 0.00 0.00 0.00 4.85
61 62 1.053424 TCCTCTGTTTTACGGCCTGT 58.947 50.000 0.00 2.95 0.00 4.00
62 63 1.418637 TCCTCTGTTTTACGGCCTGTT 59.581 47.619 0.00 0.00 0.00 3.16
63 64 2.158726 TCCTCTGTTTTACGGCCTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
64 65 2.621526 CCTCTGTTTTACGGCCTGTTTT 59.378 45.455 0.00 0.00 0.00 2.43
65 66 3.304458 CCTCTGTTTTACGGCCTGTTTTC 60.304 47.826 0.00 0.00 0.00 2.29
66 67 3.547746 TCTGTTTTACGGCCTGTTTTCT 58.452 40.909 0.00 0.00 0.00 2.52
67 68 3.314080 TCTGTTTTACGGCCTGTTTTCTG 59.686 43.478 0.00 0.00 0.00 3.02
68 69 2.223618 TGTTTTACGGCCTGTTTTCTGC 60.224 45.455 0.00 0.00 0.00 4.26
69 70 1.975660 TTTACGGCCTGTTTTCTGCT 58.024 45.000 0.00 0.00 0.00 4.24
70 71 1.234821 TTACGGCCTGTTTTCTGCTG 58.765 50.000 0.00 0.00 37.40 4.41
71 72 0.107831 TACGGCCTGTTTTCTGCTGT 59.892 50.000 0.00 0.00 45.90 4.40
72 73 1.283793 CGGCCTGTTTTCTGCTGTG 59.716 57.895 0.00 0.00 0.00 3.66
73 74 1.662044 GGCCTGTTTTCTGCTGTGG 59.338 57.895 0.00 0.00 0.00 4.17
74 75 0.823356 GGCCTGTTTTCTGCTGTGGA 60.823 55.000 0.00 0.00 0.00 4.02
75 76 1.032014 GCCTGTTTTCTGCTGTGGAA 58.968 50.000 0.00 0.00 0.00 3.53
76 77 1.408702 GCCTGTTTTCTGCTGTGGAAA 59.591 47.619 0.00 0.00 0.00 3.13
77 78 2.799562 GCCTGTTTTCTGCTGTGGAAAC 60.800 50.000 10.53 10.53 33.22 2.78
78 79 2.223805 CCTGTTTTCTGCTGTGGAAACC 60.224 50.000 13.02 0.00 33.22 3.27
79 80 1.403679 TGTTTTCTGCTGTGGAAACCG 59.596 47.619 13.02 0.00 33.22 4.44
80 81 1.673920 GTTTTCTGCTGTGGAAACCGA 59.326 47.619 0.00 0.00 33.22 4.69
81 82 2.270352 TTTCTGCTGTGGAAACCGAT 57.730 45.000 0.00 0.00 0.00 4.18
82 83 1.522668 TTCTGCTGTGGAAACCGATG 58.477 50.000 0.00 0.00 0.00 3.84
83 84 0.684535 TCTGCTGTGGAAACCGATGA 59.315 50.000 0.00 0.00 0.00 2.92
84 85 1.071542 TCTGCTGTGGAAACCGATGAA 59.928 47.619 0.00 0.00 0.00 2.57
85 86 1.466167 CTGCTGTGGAAACCGATGAAG 59.534 52.381 0.00 0.00 0.00 3.02
86 87 1.071542 TGCTGTGGAAACCGATGAAGA 59.928 47.619 0.00 0.00 0.00 2.87
87 88 2.151202 GCTGTGGAAACCGATGAAGAA 58.849 47.619 0.00 0.00 0.00 2.52
88 89 2.552315 GCTGTGGAAACCGATGAAGAAA 59.448 45.455 0.00 0.00 0.00 2.52
89 90 3.004315 GCTGTGGAAACCGATGAAGAAAA 59.996 43.478 0.00 0.00 0.00 2.29
90 91 4.787598 CTGTGGAAACCGATGAAGAAAAG 58.212 43.478 0.00 0.00 0.00 2.27
91 92 3.568007 TGTGGAAACCGATGAAGAAAAGG 59.432 43.478 0.00 0.00 0.00 3.11
92 93 3.057526 GTGGAAACCGATGAAGAAAAGGG 60.058 47.826 0.00 0.00 0.00 3.95
93 94 2.094700 GGAAACCGATGAAGAAAAGGGC 60.095 50.000 0.00 0.00 0.00 5.19
94 95 2.286365 AACCGATGAAGAAAAGGGCA 57.714 45.000 0.00 0.00 0.00 5.36
95 96 2.514458 ACCGATGAAGAAAAGGGCAT 57.486 45.000 0.00 0.00 0.00 4.40
96 97 2.369394 ACCGATGAAGAAAAGGGCATC 58.631 47.619 0.00 0.00 35.10 3.91
97 98 2.025887 ACCGATGAAGAAAAGGGCATCT 60.026 45.455 0.00 0.00 36.02 2.90
98 99 2.615912 CCGATGAAGAAAAGGGCATCTC 59.384 50.000 0.00 0.00 36.02 2.75
99 100 2.286294 CGATGAAGAAAAGGGCATCTCG 59.714 50.000 0.00 0.00 36.02 4.04
100 101 1.453155 TGAAGAAAAGGGCATCTCGC 58.547 50.000 0.00 0.00 41.28 5.03
101 102 0.375106 GAAGAAAAGGGCATCTCGCG 59.625 55.000 0.00 0.00 43.84 5.87
102 103 0.321653 AAGAAAAGGGCATCTCGCGT 60.322 50.000 5.77 0.00 43.84 6.01
103 104 0.321653 AGAAAAGGGCATCTCGCGTT 60.322 50.000 5.77 0.00 43.84 4.84
104 105 0.179189 GAAAAGGGCATCTCGCGTTG 60.179 55.000 5.77 3.93 43.84 4.10
105 106 2.200170 AAAAGGGCATCTCGCGTTGC 62.200 55.000 18.43 18.43 43.84 4.17
106 107 3.899981 AAGGGCATCTCGCGTTGCA 62.900 57.895 24.51 0.00 43.84 4.08
107 108 4.166011 GGGCATCTCGCGTTGCAC 62.166 66.667 24.51 20.36 43.84 4.57
108 109 3.422303 GGCATCTCGCGTTGCACA 61.422 61.111 24.51 0.00 43.84 4.57
109 110 2.097160 GCATCTCGCGTTGCACAG 59.903 61.111 20.62 5.40 38.72 3.66
110 111 2.671177 GCATCTCGCGTTGCACAGT 61.671 57.895 20.62 0.00 38.72 3.55
111 112 1.351430 GCATCTCGCGTTGCACAGTA 61.351 55.000 20.62 0.00 38.72 2.74
112 113 1.280982 CATCTCGCGTTGCACAGTAT 58.719 50.000 5.77 0.00 0.00 2.12
113 114 1.660607 CATCTCGCGTTGCACAGTATT 59.339 47.619 5.77 0.00 0.00 1.89
114 115 1.067693 TCTCGCGTTGCACAGTATTG 58.932 50.000 5.77 0.00 0.00 1.90
115 116 0.790207 CTCGCGTTGCACAGTATTGT 59.210 50.000 5.77 0.00 38.31 2.71
116 117 0.787787 TCGCGTTGCACAGTATTGTC 59.212 50.000 5.77 0.00 34.62 3.18
117 118 0.179225 CGCGTTGCACAGTATTGTCC 60.179 55.000 0.00 0.00 34.62 4.02
118 119 0.168128 GCGTTGCACAGTATTGTCCC 59.832 55.000 0.00 0.00 34.62 4.46
119 120 1.518325 CGTTGCACAGTATTGTCCCA 58.482 50.000 0.00 0.00 34.62 4.37
120 121 2.083774 CGTTGCACAGTATTGTCCCAT 58.916 47.619 0.00 0.00 34.62 4.00
121 122 2.487762 CGTTGCACAGTATTGTCCCATT 59.512 45.455 0.00 0.00 34.62 3.16
122 123 3.687212 CGTTGCACAGTATTGTCCCATTA 59.313 43.478 0.00 0.00 34.62 1.90
123 124 4.436852 CGTTGCACAGTATTGTCCCATTAC 60.437 45.833 0.00 0.00 34.62 1.89
124 125 4.568072 TGCACAGTATTGTCCCATTACT 57.432 40.909 0.00 0.00 34.62 2.24
125 126 4.260985 TGCACAGTATTGTCCCATTACTG 58.739 43.478 17.94 17.94 45.68 2.74
130 131 6.106877 CAGTATTGTCCCATTACTGTTTCG 57.893 41.667 13.96 0.00 40.46 3.46
131 132 4.634443 AGTATTGTCCCATTACTGTTTCGC 59.366 41.667 0.00 0.00 31.90 4.70
132 133 2.552599 TGTCCCATTACTGTTTCGCA 57.447 45.000 0.00 0.00 0.00 5.10
133 134 2.852449 TGTCCCATTACTGTTTCGCAA 58.148 42.857 0.00 0.00 0.00 4.85
134 135 3.215151 TGTCCCATTACTGTTTCGCAAA 58.785 40.909 0.00 0.00 0.00 3.68
167 168 2.639065 TGTCCCATTACTCGATTTGCC 58.361 47.619 0.00 0.00 0.00 4.52
168 169 1.597663 GTCCCATTACTCGATTTGCCG 59.402 52.381 0.00 0.00 0.00 5.69
171 172 0.944386 CATTACTCGATTTGCCGGGG 59.056 55.000 2.18 0.00 33.60 5.73
173 174 0.614294 TTACTCGATTTGCCGGGGAA 59.386 50.000 2.18 0.00 33.60 3.97
175 176 0.676782 ACTCGATTTGCCGGGGAAAG 60.677 55.000 18.68 7.89 33.60 2.62
176 177 0.392461 CTCGATTTGCCGGGGAAAGA 60.392 55.000 18.68 10.62 0.00 2.52
177 178 0.675522 TCGATTTGCCGGGGAAAGAC 60.676 55.000 18.68 13.58 0.00 3.01
178 179 0.958382 CGATTTGCCGGGGAAAGACA 60.958 55.000 18.68 0.00 0.00 3.41
179 180 1.474330 GATTTGCCGGGGAAAGACAT 58.526 50.000 18.68 2.23 0.00 3.06
184 186 1.531739 GCCGGGGAAAGACATTGCAA 61.532 55.000 2.18 0.00 0.00 4.08
186 188 1.342819 CCGGGGAAAGACATTGCAAAA 59.657 47.619 1.71 0.00 0.00 2.44
190 192 4.864247 CGGGGAAAGACATTGCAAAATAAG 59.136 41.667 1.71 0.00 0.00 1.73
205 207 7.420002 TGCAAAATAAGATGAGAATTCCATCG 58.580 34.615 21.28 12.29 43.73 3.84
214 216 2.679837 GAGAATTCCATCGAAAGCAGCA 59.320 45.455 0.65 0.00 0.00 4.41
215 217 3.084039 AGAATTCCATCGAAAGCAGCAA 58.916 40.909 0.65 0.00 0.00 3.91
216 218 3.507233 AGAATTCCATCGAAAGCAGCAAA 59.493 39.130 0.65 0.00 0.00 3.68
217 219 2.995466 TTCCATCGAAAGCAGCAAAG 57.005 45.000 0.00 0.00 0.00 2.77
218 220 1.896220 TCCATCGAAAGCAGCAAAGT 58.104 45.000 0.00 0.00 0.00 2.66
219 221 3.052455 TCCATCGAAAGCAGCAAAGTA 57.948 42.857 0.00 0.00 0.00 2.24
221 223 2.744202 CCATCGAAAGCAGCAAAGTAGT 59.256 45.455 0.00 0.00 0.00 2.73
224 226 2.800544 TCGAAAGCAGCAAAGTAGTGTC 59.199 45.455 0.00 0.00 0.00 3.67
227 229 4.627467 CGAAAGCAGCAAAGTAGTGTCTAT 59.373 41.667 0.00 0.00 0.00 1.98
231 233 4.020218 AGCAGCAAAGTAGTGTCTATGGAA 60.020 41.667 0.00 0.00 0.00 3.53
253 255 4.388485 ACAAGGGAATGGAATTTGCAAAC 58.612 39.130 15.41 2.27 36.07 2.93
255 257 4.276058 AGGGAATGGAATTTGCAAACTG 57.724 40.909 15.41 0.00 36.07 3.16
256 258 2.743664 GGGAATGGAATTTGCAAACTGC 59.256 45.455 15.41 9.98 39.74 4.40
266 268 3.591979 GCAAACTGCAATTGGAGCA 57.408 47.368 25.09 7.79 44.26 4.26
275 280 2.288579 TGCAATTGGAGCAAGCAAGAAG 60.289 45.455 7.72 0.00 39.39 2.85
287 294 0.519077 GCAAGAAGCTTTCCACCGAG 59.481 55.000 0.00 0.00 41.15 4.63
303 310 1.786582 GAGCGCTGCAGAGAAACAG 59.213 57.895 22.55 1.92 36.96 3.16
309 316 2.600792 CGCTGCAGAGAAACAGACAAAC 60.601 50.000 20.43 0.00 35.90 2.93
310 317 2.600792 GCTGCAGAGAAACAGACAAACG 60.601 50.000 20.43 0.00 35.90 3.60
311 318 2.866156 CTGCAGAGAAACAGACAAACGA 59.134 45.455 8.42 0.00 35.90 3.85
312 319 2.866156 TGCAGAGAAACAGACAAACGAG 59.134 45.455 0.00 0.00 0.00 4.18
338 345 0.038890 AGGCAAGGAAAGGAAGGAGC 59.961 55.000 0.00 0.00 0.00 4.70
347 354 2.124942 GGAAGGAGCGAGGCCTTG 60.125 66.667 16.53 16.53 45.43 3.61
352 359 2.359230 GAGCGAGGCCTTGCAGTT 60.359 61.111 40.11 24.40 42.40 3.16
353 360 2.359230 AGCGAGGCCTTGCAGTTC 60.359 61.111 40.11 16.15 42.40 3.01
354 361 3.435186 GCGAGGCCTTGCAGTTCC 61.435 66.667 35.91 8.66 39.74 3.62
355 362 2.032528 CGAGGCCTTGCAGTTCCA 59.967 61.111 6.77 0.00 0.00 3.53
356 363 2.037136 CGAGGCCTTGCAGTTCCAG 61.037 63.158 6.77 0.00 0.00 3.86
357 364 1.676967 GAGGCCTTGCAGTTCCAGG 60.677 63.158 6.77 0.00 0.00 4.45
384 391 2.124570 CATTCCCCACGAGGCCAG 60.125 66.667 5.01 0.00 0.00 4.85
448 463 2.955881 CGACAAGTGTCCCCTCCCC 61.956 68.421 5.88 0.00 41.86 4.81
450 465 1.539124 ACAAGTGTCCCCTCCCCTC 60.539 63.158 0.00 0.00 0.00 4.30
451 466 2.125225 AAGTGTCCCCTCCCCTCC 59.875 66.667 0.00 0.00 0.00 4.30
452 467 3.581141 AAGTGTCCCCTCCCCTCCC 62.581 68.421 0.00 0.00 0.00 4.30
453 468 4.348495 GTGTCCCCTCCCCTCCCA 62.348 72.222 0.00 0.00 0.00 4.37
454 469 4.024984 TGTCCCCTCCCCTCCCAG 62.025 72.222 0.00 0.00 0.00 4.45
460 475 4.421554 CTCCCCTCCCAGGCTGGA 62.422 72.222 34.84 18.87 40.96 3.86
461 476 4.741239 TCCCCTCCCAGGCTGGAC 62.741 72.222 34.84 0.00 40.96 4.02
464 479 3.721706 CCTCCCAGGCTGGACACC 61.722 72.222 34.84 0.00 40.96 4.16
465 480 3.721706 CTCCCAGGCTGGACACCC 61.722 72.222 34.84 0.00 40.96 4.61
466 481 4.270153 TCCCAGGCTGGACACCCT 62.270 66.667 34.84 0.00 40.96 4.34
467 482 4.039092 CCCAGGCTGGACACCCTG 62.039 72.222 34.84 12.25 46.49 4.45
471 489 4.394712 GGCTGGACACCCTGACCG 62.395 72.222 0.00 0.00 34.93 4.79
493 511 2.366916 GAGGTCCAGCACAGCATATACT 59.633 50.000 0.00 0.00 0.00 2.12
494 512 3.574396 GAGGTCCAGCACAGCATATACTA 59.426 47.826 0.00 0.00 0.00 1.82
495 513 4.163427 AGGTCCAGCACAGCATATACTAT 58.837 43.478 0.00 0.00 0.00 2.12
496 514 4.594920 AGGTCCAGCACAGCATATACTATT 59.405 41.667 0.00 0.00 0.00 1.73
497 515 5.780282 AGGTCCAGCACAGCATATACTATTA 59.220 40.000 0.00 0.00 0.00 0.98
498 516 5.869888 GGTCCAGCACAGCATATACTATTAC 59.130 44.000 0.00 0.00 0.00 1.89
499 517 6.295349 GGTCCAGCACAGCATATACTATTACT 60.295 42.308 0.00 0.00 0.00 2.24
500 518 7.093902 GGTCCAGCACAGCATATACTATTACTA 60.094 40.741 0.00 0.00 0.00 1.82
506 524 5.655532 ACAGCATATACTATTACTACCCCCG 59.344 44.000 0.00 0.00 0.00 5.73
510 528 6.628844 GCATATACTATTACTACCCCCGTTGG 60.629 46.154 0.00 0.00 0.00 3.77
511 529 3.120468 ACTATTACTACCCCCGTTGGT 57.880 47.619 0.00 0.00 42.62 3.67
541 559 4.019983 CCAGTAGGTGCCTCGTCT 57.980 61.111 0.00 0.00 0.00 4.18
542 560 2.277858 CCAGTAGGTGCCTCGTCTT 58.722 57.895 0.00 0.00 0.00 3.01
543 561 0.173708 CCAGTAGGTGCCTCGTCTTC 59.826 60.000 0.00 0.00 0.00 2.87
544 562 1.178276 CAGTAGGTGCCTCGTCTTCT 58.822 55.000 0.00 0.00 0.00 2.85
545 563 1.133407 CAGTAGGTGCCTCGTCTTCTC 59.867 57.143 0.00 0.00 0.00 2.87
546 564 1.004979 AGTAGGTGCCTCGTCTTCTCT 59.995 52.381 0.00 0.00 0.00 3.10
565 583 1.401905 CTTCCTGCCGCCAAGATAAAC 59.598 52.381 0.00 0.00 0.00 2.01
575 593 4.403453 CGCCAAGATAAACGGAGAAAAAG 58.597 43.478 0.00 0.00 0.00 2.27
588 606 8.689251 AACGGAGAAAAAGAAGAAAAGAAAAG 57.311 30.769 0.00 0.00 0.00 2.27
589 607 8.051901 ACGGAGAAAAAGAAGAAAAGAAAAGA 57.948 30.769 0.00 0.00 0.00 2.52
590 608 8.520351 ACGGAGAAAAAGAAGAAAAGAAAAGAA 58.480 29.630 0.00 0.00 0.00 2.52
591 609 9.521503 CGGAGAAAAAGAAGAAAAGAAAAGAAT 57.478 29.630 0.00 0.00 0.00 2.40
598 616 9.958234 AAAGAAGAAAAGAAAAGAATACTCTGC 57.042 29.630 0.00 0.00 30.03 4.26
599 617 8.916628 AGAAGAAAAGAAAAGAATACTCTGCT 57.083 30.769 0.00 0.00 30.03 4.24
618 636 3.056250 TGCTAGAGGCAGCATAGAATAGC 60.056 47.826 0.00 0.61 46.41 2.97
631 649 0.740737 GAATAGCAAGGCACGCCAAT 59.259 50.000 11.35 0.00 38.92 3.16
632 650 0.457035 AATAGCAAGGCACGCCAATG 59.543 50.000 11.35 9.95 38.92 2.82
633 651 0.680921 ATAGCAAGGCACGCCAATGT 60.681 50.000 11.35 3.24 38.92 2.71
634 652 1.585267 TAGCAAGGCACGCCAATGTG 61.585 55.000 11.35 3.95 42.81 3.21
635 653 3.041701 CAAGGCACGCCAATGTGT 58.958 55.556 11.35 0.00 41.94 3.72
645 685 2.390599 CCAATGTGTCGCCAGTCCG 61.391 63.158 0.00 0.00 0.00 4.79
671 711 2.338577 CCAAATGGCGAATCTCCTCT 57.661 50.000 0.00 0.00 0.00 3.69
672 712 2.216898 CCAAATGGCGAATCTCCTCTC 58.783 52.381 0.00 0.00 0.00 3.20
673 713 2.216898 CAAATGGCGAATCTCCTCTCC 58.783 52.381 0.00 0.00 0.00 3.71
674 714 1.799933 AATGGCGAATCTCCTCTCCT 58.200 50.000 0.00 0.00 0.00 3.69
675 715 1.337118 ATGGCGAATCTCCTCTCCTC 58.663 55.000 0.00 0.00 0.00 3.71
676 716 0.260230 TGGCGAATCTCCTCTCCTCT 59.740 55.000 0.00 0.00 0.00 3.69
677 717 0.958822 GGCGAATCTCCTCTCCTCTC 59.041 60.000 0.00 0.00 0.00 3.20
678 718 0.958822 GCGAATCTCCTCTCCTCTCC 59.041 60.000 0.00 0.00 0.00 3.71
679 719 1.478654 GCGAATCTCCTCTCCTCTCCT 60.479 57.143 0.00 0.00 0.00 3.69
680 720 2.504367 CGAATCTCCTCTCCTCTCCTC 58.496 57.143 0.00 0.00 0.00 3.71
681 721 2.814097 CGAATCTCCTCTCCTCTCCTCC 60.814 59.091 0.00 0.00 0.00 4.30
737 777 3.423154 CGGACGCTGGGTTTGCTC 61.423 66.667 0.00 0.00 0.00 4.26
738 778 3.423154 GGACGCTGGGTTTGCTCG 61.423 66.667 0.00 0.00 0.00 5.03
739 779 4.090057 GACGCTGGGTTTGCTCGC 62.090 66.667 0.00 0.00 0.00 5.03
740 780 4.626081 ACGCTGGGTTTGCTCGCT 62.626 61.111 0.00 0.00 0.00 4.93
811 879 0.035056 CCCCTCCTTGTAGTTGCAGG 60.035 60.000 0.00 0.00 0.00 4.85
812 880 0.984230 CCCTCCTTGTAGTTGCAGGA 59.016 55.000 0.00 0.00 0.00 3.86
815 904 1.625818 CTCCTTGTAGTTGCAGGACCT 59.374 52.381 0.00 0.00 0.00 3.85
842 936 6.553857 ACCAGGACCAGGACTAGTATATAAG 58.446 44.000 10.44 0.00 0.00 1.73
852 947 5.450688 GGACTAGTATATAAGCATCCCAGCG 60.451 48.000 0.00 0.00 40.15 5.18
855 950 2.105006 ATATAAGCATCCCAGCGCAG 57.895 50.000 11.47 0.00 40.15 5.18
875 970 1.210931 CCATCACACCAAAGCGCAG 59.789 57.895 11.47 0.00 0.00 5.18
879 974 2.594592 ACACCAAAGCGCAGGGTC 60.595 61.111 11.47 0.00 31.03 4.46
924 1022 2.336667 CAAATTCCAATTGCGTCCACC 58.663 47.619 0.00 0.00 0.00 4.61
925 1023 1.626686 AATTCCAATTGCGTCCACCA 58.373 45.000 0.00 0.00 0.00 4.17
926 1024 0.887933 ATTCCAATTGCGTCCACCAC 59.112 50.000 0.00 0.00 0.00 4.16
935 1033 2.257676 GTCCACCACGAGTCGGAC 59.742 66.667 18.30 10.12 38.57 4.79
939 1037 1.660575 CACCACGAGTCGGACACAC 60.661 63.158 18.30 0.78 0.00 3.82
943 1041 0.939577 CACGAGTCGGACACACCAAG 60.940 60.000 18.30 0.00 38.90 3.61
945 1043 1.367840 GAGTCGGACACACCAAGCT 59.632 57.895 11.27 0.00 38.90 3.74
946 1044 0.667792 GAGTCGGACACACCAAGCTC 60.668 60.000 11.27 0.00 38.90 4.09
947 1045 1.115930 AGTCGGACACACCAAGCTCT 61.116 55.000 11.27 0.00 38.90 4.09
949 1047 1.112916 TCGGACACACCAAGCTCTCA 61.113 55.000 0.00 0.00 38.90 3.27
1248 1357 2.655364 CTCATGGAGTACGCGCCG 60.655 66.667 5.73 0.00 37.39 6.46
1385 1494 3.414700 CCACTGCGACGTCAAGGC 61.415 66.667 17.16 11.60 0.00 4.35
1405 1514 4.505217 GCAACGTGCTCATCGGCG 62.505 66.667 0.00 0.00 40.96 6.46
1563 1681 3.044305 GACATATGGGCGCTCGGC 61.044 66.667 7.64 7.33 42.51 5.54
1781 1899 4.394078 CGAGTTCGTGGCCGTCGA 62.394 66.667 16.84 16.84 33.50 4.20
1854 1972 2.358737 GTGTCCCCCAAGAGCGTG 60.359 66.667 0.00 0.00 0.00 5.34
1894 2012 4.360027 ACGACGACGACGACACGG 62.360 66.667 25.15 0.00 42.66 4.94
1995 2113 1.153549 GAGCTGGATCACGGTCCAC 60.154 63.158 0.00 0.00 43.20 4.02
2026 2144 2.249309 TCGACGACGACACCGAAC 59.751 61.111 5.75 0.00 43.81 3.95
2028 2146 2.352333 CGACGACGACACCGAACAC 61.352 63.158 0.00 0.00 42.66 3.32
2163 2299 3.864686 CAAGGCAACGGCGATCGG 61.865 66.667 16.62 3.26 44.45 4.18
2229 2368 1.006832 ATCACGTGGTTAGCGATTGC 58.993 50.000 17.00 0.00 43.24 3.56
2253 2392 1.336755 ACCGTTCCAATCACAAGCAAC 59.663 47.619 0.00 0.00 0.00 4.17
2277 2416 3.712016 TTCTTTTCCGATCCCATGTCA 57.288 42.857 0.00 0.00 0.00 3.58
2294 2433 1.606668 GTCATGTTTCGCTTGTCCCAA 59.393 47.619 0.00 0.00 0.00 4.12
2295 2434 1.879380 TCATGTTTCGCTTGTCCCAAG 59.121 47.619 0.00 0.00 0.00 3.61
2296 2435 1.608590 CATGTTTCGCTTGTCCCAAGT 59.391 47.619 5.92 0.00 0.00 3.16
2299 2438 0.536460 TTTCGCTTGTCCCAAGTCCC 60.536 55.000 5.92 0.00 0.00 4.46
2301 2440 3.056328 GCTTGTCCCAAGTCCCGC 61.056 66.667 5.92 0.00 0.00 6.13
2330 2469 2.192711 GGCCCGGCCCGTTTATTA 59.807 61.111 18.83 0.00 44.06 0.98
2331 2470 2.188829 GGCCCGGCCCGTTTATTAC 61.189 63.158 18.83 0.00 44.06 1.89
2333 2472 1.441732 GCCCGGCCCGTTTATTACAG 61.442 60.000 0.85 0.00 0.00 2.74
2337 2476 1.354155 GCCCGTTTATTACAGCGCC 59.646 57.895 2.29 0.00 0.00 6.53
2338 2477 1.370587 GCCCGTTTATTACAGCGCCA 61.371 55.000 2.29 0.00 0.00 5.69
2340 2479 0.375803 CCGTTTATTACAGCGCCACC 59.624 55.000 2.29 0.00 0.00 4.61
2342 2481 1.668751 CGTTTATTACAGCGCCACCAT 59.331 47.619 2.29 0.00 0.00 3.55
2347 2486 1.904990 TTACAGCGCCACCATGCCTA 61.905 55.000 2.29 0.00 0.00 3.93
2348 2487 2.587322 TACAGCGCCACCATGCCTAC 62.587 60.000 2.29 0.00 0.00 3.18
2352 2491 1.378514 CGCCACCATGCCTACCTTT 60.379 57.895 0.00 0.00 0.00 3.11
2354 2493 0.034089 GCCACCATGCCTACCTTTCT 60.034 55.000 0.00 0.00 0.00 2.52
2355 2494 1.616994 GCCACCATGCCTACCTTTCTT 60.617 52.381 0.00 0.00 0.00 2.52
2364 2528 0.179108 CTACCTTTCTTCCTCCCGCG 60.179 60.000 0.00 0.00 0.00 6.46
2376 2544 1.831389 CTCCCGCGTCGCCATTATTG 61.831 60.000 12.44 0.00 0.00 1.90
2387 2555 2.442236 CCATTATTGGCAGGAGTGGT 57.558 50.000 4.64 0.00 35.85 4.16
2388 2556 2.026641 CCATTATTGGCAGGAGTGGTG 58.973 52.381 4.64 0.00 35.85 4.17
2389 2557 2.357050 CCATTATTGGCAGGAGTGGTGA 60.357 50.000 4.64 0.00 35.85 4.02
2399 2567 1.511768 GAGTGGTGAGTACTCCGGC 59.488 63.158 20.11 10.05 38.85 6.13
2403 2571 2.772691 GGTGAGTACTCCGGCTCCG 61.773 68.421 20.11 0.48 39.44 4.63
2413 2581 1.804326 CCGGCTCCGACTTAACACG 60.804 63.158 10.28 0.00 42.83 4.49
2438 2634 0.101759 AATGCCAGCGATGACATTGC 59.898 50.000 14.51 18.52 40.06 3.56
2454 2654 4.918201 GCGGAGGAGGGAATGCGG 62.918 72.222 0.00 0.00 0.00 5.69
2460 2660 1.048724 AGGAGGGAATGCGGATCGAA 61.049 55.000 0.00 0.00 0.00 3.71
2491 2691 0.589223 TTTCGTTTGGTCGGTCATGC 59.411 50.000 0.00 0.00 0.00 4.06
2492 2692 1.561717 TTCGTTTGGTCGGTCATGCG 61.562 55.000 0.00 0.00 0.00 4.73
2519 2719 3.816367 GAGTGGCGATGGGGCTAGC 62.816 68.421 6.04 6.04 42.84 3.42
2527 2727 3.344137 ATGGGGCTAGCGGTGGTTG 62.344 63.158 9.00 0.00 0.00 3.77
2594 2799 2.414179 GACGTCGGGTGTGTGTGA 59.586 61.111 0.00 0.00 0.00 3.58
2595 2800 1.660575 GACGTCGGGTGTGTGTGAG 60.661 63.158 0.00 0.00 0.00 3.51
2596 2801 2.345880 GACGTCGGGTGTGTGTGAGT 62.346 60.000 0.00 0.00 0.00 3.41
2597 2802 1.949133 CGTCGGGTGTGTGTGAGTG 60.949 63.158 0.00 0.00 0.00 3.51
2598 2803 1.440060 GTCGGGTGTGTGTGAGTGA 59.560 57.895 0.00 0.00 0.00 3.41
2599 2804 0.597637 GTCGGGTGTGTGTGAGTGAG 60.598 60.000 0.00 0.00 0.00 3.51
2600 2805 1.040893 TCGGGTGTGTGTGAGTGAGT 61.041 55.000 0.00 0.00 0.00 3.41
2601 2806 0.875908 CGGGTGTGTGTGAGTGAGTG 60.876 60.000 0.00 0.00 0.00 3.51
2602 2807 0.464036 GGGTGTGTGTGAGTGAGTGA 59.536 55.000 0.00 0.00 0.00 3.41
2603 2808 1.539065 GGGTGTGTGTGAGTGAGTGAG 60.539 57.143 0.00 0.00 0.00 3.51
2604 2809 1.137086 GGTGTGTGTGAGTGAGTGAGT 59.863 52.381 0.00 0.00 0.00 3.41
2605 2810 2.196749 GTGTGTGTGAGTGAGTGAGTG 58.803 52.381 0.00 0.00 0.00 3.51
2606 2811 1.136891 TGTGTGTGAGTGAGTGAGTGG 59.863 52.381 0.00 0.00 0.00 4.00
2642 2858 2.785425 GGCGGGATGGATGGTTTGC 61.785 63.158 0.00 0.00 0.00 3.68
2692 2908 4.451150 TGAGTCGGGTGGATGCGC 62.451 66.667 0.00 0.00 0.00 6.09
2728 2944 2.056223 CCAATTGGCAGCCCCTGAG 61.056 63.158 12.53 0.00 32.44 3.35
2741 2957 1.079543 CCTGAGAGGGACGCTTGTG 60.080 63.158 0.00 0.00 39.71 3.33
2742 2958 1.668294 CTGAGAGGGACGCTTGTGT 59.332 57.895 0.00 0.00 39.71 3.72
2743 2959 0.668706 CTGAGAGGGACGCTTGTGTG 60.669 60.000 0.00 0.00 39.71 3.82
2751 2974 1.895280 GACGCTTGTGTGAGCAGAGC 61.895 60.000 0.00 0.00 42.83 4.09
2815 3038 1.081376 CGTGTCGGTCTCGCTTTCT 60.081 57.895 0.00 0.00 36.13 2.52
2819 3042 1.073768 GTCGGTCTCGCTTTCTGCTC 61.074 60.000 0.00 0.00 40.11 4.26
2822 3045 1.293498 GTCTCGCTTTCTGCTCCCA 59.707 57.895 0.00 0.00 40.11 4.37
2833 3056 3.443045 GCTCCCACCATGCGGTTG 61.443 66.667 0.00 0.00 46.31 3.77
2865 3088 3.699894 CAGGGCAGAGCGGAGTGT 61.700 66.667 0.00 0.00 0.00 3.55
2867 3090 4.767255 GGGCAGAGCGGAGTGTGG 62.767 72.222 0.00 0.00 0.00 4.17
2868 3091 3.695606 GGCAGAGCGGAGTGTGGA 61.696 66.667 0.00 0.00 0.00 4.02
2904 3170 4.803426 GAGGCGAGCGGTGTCCAG 62.803 72.222 0.00 0.00 0.00 3.86
2921 3190 2.737376 GCCGTCCGACTTGTGGTC 60.737 66.667 0.00 0.00 41.28 4.02
2930 3199 4.465512 CTTGTGGTCATGGCGCGC 62.466 66.667 25.94 25.94 0.00 6.86
2983 3256 3.696051 CACCACCAATTTAGGATCTGTGG 59.304 47.826 0.00 0.00 45.57 4.17
2984 3257 2.689983 CCACCAATTTAGGATCTGTGGC 59.310 50.000 0.00 0.00 35.81 5.01
2985 3258 3.355378 CACCAATTTAGGATCTGTGGCA 58.645 45.455 0.00 0.00 0.00 4.92
2987 3260 3.010584 ACCAATTTAGGATCTGTGGCACT 59.989 43.478 19.83 0.00 0.00 4.40
2988 3261 3.379372 CCAATTTAGGATCTGTGGCACTG 59.621 47.826 19.83 18.54 0.00 3.66
2989 3262 2.787473 TTTAGGATCTGTGGCACTGG 57.213 50.000 22.08 13.48 0.00 4.00
2990 3263 0.253044 TTAGGATCTGTGGCACTGGC 59.747 55.000 22.08 14.86 40.13 4.85
2991 3264 0.909133 TAGGATCTGTGGCACTGGCA 60.909 55.000 22.08 0.07 43.71 4.92
3043 3333 6.021596 ACGTTTACGGTAAGTAATAGTGACG 58.978 40.000 7.24 11.96 44.03 4.35
3044 3334 5.053025 CGTTTACGGTAAGTAATAGTGACGC 60.053 44.000 0.33 0.00 44.03 5.19
3045 3335 5.818136 TTACGGTAAGTAATAGTGACGCT 57.182 39.130 0.00 0.00 40.15 5.07
3046 3336 4.025015 ACGGTAAGTAATAGTGACGCTG 57.975 45.455 0.00 0.00 0.00 5.18
3047 3337 3.441572 ACGGTAAGTAATAGTGACGCTGT 59.558 43.478 0.00 0.00 0.00 4.40
3048 3338 3.789756 CGGTAAGTAATAGTGACGCTGTG 59.210 47.826 0.00 0.00 0.00 3.66
3049 3339 4.110482 GGTAAGTAATAGTGACGCTGTGG 58.890 47.826 0.00 0.00 0.00 4.17
3050 3340 2.295253 AGTAATAGTGACGCTGTGGC 57.705 50.000 0.00 0.00 0.00 5.01
3051 3341 1.825474 AGTAATAGTGACGCTGTGGCT 59.175 47.619 0.00 0.00 36.09 4.75
3052 3342 1.927174 GTAATAGTGACGCTGTGGCTG 59.073 52.381 0.00 0.00 36.09 4.85
3053 3343 0.321671 AATAGTGACGCTGTGGCTGT 59.678 50.000 0.00 0.00 36.09 4.40
3054 3344 0.390340 ATAGTGACGCTGTGGCTGTG 60.390 55.000 0.00 0.00 36.09 3.66
3062 3352 1.502163 GCTGTGGCTGTGACTGTGAC 61.502 60.000 0.00 0.00 35.22 3.67
3063 3353 1.217585 CTGTGGCTGTGACTGTGACG 61.218 60.000 0.00 0.00 0.00 4.35
3086 3376 2.631160 ACGAAAGTTCCATGTGGACA 57.369 45.000 0.15 0.00 46.40 4.02
3149 3440 1.062525 CATTCTGCGCTTTACGGCC 59.937 57.895 9.73 0.00 43.93 6.13
3158 3457 2.515912 CGCTTTACGGCCAGATTTTTC 58.484 47.619 2.24 0.00 38.44 2.29
3159 3458 2.161609 CGCTTTACGGCCAGATTTTTCT 59.838 45.455 2.24 0.00 38.44 2.52
3160 3459 3.365969 CGCTTTACGGCCAGATTTTTCTT 60.366 43.478 2.24 0.00 38.44 2.52
3161 3460 4.166523 GCTTTACGGCCAGATTTTTCTTC 58.833 43.478 2.24 0.00 0.00 2.87
3162 3461 4.733850 CTTTACGGCCAGATTTTTCTTCC 58.266 43.478 2.24 0.00 0.00 3.46
3254 3574 2.278923 TTGCTTCACGTGCGACGA 60.279 55.556 11.67 0.00 46.05 4.20
3294 3614 1.071567 GCCAGCTTCTGACGACGTAC 61.072 60.000 0.00 0.00 32.44 3.67
3296 3616 1.607713 CAGCTTCTGACGACGTACTG 58.392 55.000 0.00 0.00 32.44 2.74
3297 3617 1.069159 CAGCTTCTGACGACGTACTGT 60.069 52.381 0.00 0.00 32.44 3.55
3298 3618 2.159037 CAGCTTCTGACGACGTACTGTA 59.841 50.000 0.00 0.00 32.44 2.74
3299 3619 2.159234 AGCTTCTGACGACGTACTGTAC 59.841 50.000 0.00 7.90 0.00 2.90
3301 3621 3.734031 CTTCTGACGACGTACTGTACTG 58.266 50.000 15.35 11.18 0.00 2.74
3314 3634 3.535561 ACTGTACTGCTACATTGATGCC 58.464 45.455 0.00 0.00 32.21 4.40
3341 3661 4.173256 GCAGCTAATTATGTGCCGTTTTT 58.827 39.130 7.62 0.00 0.00 1.94
3342 3662 4.265320 GCAGCTAATTATGTGCCGTTTTTC 59.735 41.667 7.62 0.00 0.00 2.29
3345 3665 5.034797 GCTAATTATGTGCCGTTTTTCCTC 58.965 41.667 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.337167 GCAAAAGAATGGGCCTGTCAC 60.337 52.381 4.53 0.00 0.00 3.67
1 2 0.968405 GCAAAAGAATGGGCCTGTCA 59.032 50.000 4.53 0.00 0.00 3.58
2 3 0.968405 TGCAAAAGAATGGGCCTGTC 59.032 50.000 4.53 1.45 0.00 3.51
3 4 0.971386 CTGCAAAAGAATGGGCCTGT 59.029 50.000 4.53 0.00 0.00 4.00
4 5 0.971386 ACTGCAAAAGAATGGGCCTG 59.029 50.000 4.53 0.00 0.00 4.85
5 6 1.345415 CAACTGCAAAAGAATGGGCCT 59.655 47.619 4.53 0.00 0.00 5.19
6 7 1.344114 TCAACTGCAAAAGAATGGGCC 59.656 47.619 0.00 0.00 0.00 5.80
7 8 2.818130 TCAACTGCAAAAGAATGGGC 57.182 45.000 0.00 0.00 0.00 5.36
8 9 4.491676 CAGATCAACTGCAAAAGAATGGG 58.508 43.478 0.00 0.00 39.86 4.00
21 22 4.252073 GACAGCTTGATCACAGATCAACT 58.748 43.478 16.14 14.79 34.66 3.16
22 23 3.373439 GGACAGCTTGATCACAGATCAAC 59.627 47.826 16.14 13.26 34.66 3.18
23 24 3.262660 AGGACAGCTTGATCACAGATCAA 59.737 43.478 18.29 18.29 36.67 2.57
24 25 2.836372 AGGACAGCTTGATCACAGATCA 59.164 45.455 5.63 5.63 0.00 2.92
25 26 3.132646 AGAGGACAGCTTGATCACAGATC 59.867 47.826 0.00 0.15 0.00 2.75
26 27 3.106054 AGAGGACAGCTTGATCACAGAT 58.894 45.455 0.00 0.00 0.00 2.90
27 28 2.233186 CAGAGGACAGCTTGATCACAGA 59.767 50.000 0.00 0.00 0.00 3.41
28 29 2.028294 ACAGAGGACAGCTTGATCACAG 60.028 50.000 0.00 0.00 0.00 3.66
29 30 1.973515 ACAGAGGACAGCTTGATCACA 59.026 47.619 0.00 0.00 0.00 3.58
30 31 2.758736 ACAGAGGACAGCTTGATCAC 57.241 50.000 0.00 0.00 0.00 3.06
31 32 3.777106 AAACAGAGGACAGCTTGATCA 57.223 42.857 0.00 0.00 0.00 2.92
32 33 4.092091 CGTAAAACAGAGGACAGCTTGATC 59.908 45.833 0.00 0.00 0.00 2.92
33 34 3.997021 CGTAAAACAGAGGACAGCTTGAT 59.003 43.478 0.00 0.00 0.00 2.57
34 35 3.390135 CGTAAAACAGAGGACAGCTTGA 58.610 45.455 0.00 0.00 0.00 3.02
35 36 2.480419 CCGTAAAACAGAGGACAGCTTG 59.520 50.000 0.00 0.00 0.00 4.01
36 37 2.767505 CCGTAAAACAGAGGACAGCTT 58.232 47.619 0.00 0.00 0.00 3.74
37 38 1.608283 GCCGTAAAACAGAGGACAGCT 60.608 52.381 0.00 0.00 0.00 4.24
38 39 0.796927 GCCGTAAAACAGAGGACAGC 59.203 55.000 0.00 0.00 0.00 4.40
39 40 1.002087 AGGCCGTAAAACAGAGGACAG 59.998 52.381 0.00 0.00 33.20 3.51
40 41 1.053424 AGGCCGTAAAACAGAGGACA 58.947 50.000 0.00 0.00 33.20 4.02
41 42 1.270678 ACAGGCCGTAAAACAGAGGAC 60.271 52.381 0.00 0.00 0.00 3.85
42 43 1.053424 ACAGGCCGTAAAACAGAGGA 58.947 50.000 0.00 0.00 0.00 3.71
43 44 1.892209 AACAGGCCGTAAAACAGAGG 58.108 50.000 0.00 0.00 0.00 3.69
44 45 3.564225 AGAAAACAGGCCGTAAAACAGAG 59.436 43.478 0.00 0.00 0.00 3.35
45 46 3.314080 CAGAAAACAGGCCGTAAAACAGA 59.686 43.478 0.00 0.00 0.00 3.41
46 47 3.628017 CAGAAAACAGGCCGTAAAACAG 58.372 45.455 0.00 0.00 0.00 3.16
47 48 2.223618 GCAGAAAACAGGCCGTAAAACA 60.224 45.455 0.00 0.00 0.00 2.83
48 49 2.034179 AGCAGAAAACAGGCCGTAAAAC 59.966 45.455 0.00 0.00 0.00 2.43
49 50 2.034053 CAGCAGAAAACAGGCCGTAAAA 59.966 45.455 0.00 0.00 0.00 1.52
50 51 1.606668 CAGCAGAAAACAGGCCGTAAA 59.393 47.619 0.00 0.00 0.00 2.01
51 52 1.234821 CAGCAGAAAACAGGCCGTAA 58.765 50.000 0.00 0.00 0.00 3.18
52 53 0.107831 ACAGCAGAAAACAGGCCGTA 59.892 50.000 0.00 0.00 0.00 4.02
53 54 1.152963 ACAGCAGAAAACAGGCCGT 60.153 52.632 0.00 0.00 0.00 5.68
54 55 1.283793 CACAGCAGAAAACAGGCCG 59.716 57.895 0.00 0.00 0.00 6.13
55 56 0.823356 TCCACAGCAGAAAACAGGCC 60.823 55.000 0.00 0.00 0.00 5.19
56 57 1.032014 TTCCACAGCAGAAAACAGGC 58.968 50.000 0.00 0.00 0.00 4.85
57 58 2.223805 GGTTTCCACAGCAGAAAACAGG 60.224 50.000 0.00 0.00 40.06 4.00
58 59 2.541588 CGGTTTCCACAGCAGAAAACAG 60.542 50.000 2.59 1.82 40.27 3.16
59 60 1.403679 CGGTTTCCACAGCAGAAAACA 59.596 47.619 2.59 0.00 40.27 2.83
60 61 1.673920 TCGGTTTCCACAGCAGAAAAC 59.326 47.619 0.00 0.00 37.53 2.43
61 62 2.045561 TCGGTTTCCACAGCAGAAAA 57.954 45.000 0.00 0.00 35.13 2.29
62 63 1.879380 CATCGGTTTCCACAGCAGAAA 59.121 47.619 0.00 0.00 0.00 2.52
63 64 1.071542 TCATCGGTTTCCACAGCAGAA 59.928 47.619 0.00 0.00 0.00 3.02
64 65 0.684535 TCATCGGTTTCCACAGCAGA 59.315 50.000 0.00 0.00 0.00 4.26
65 66 1.466167 CTTCATCGGTTTCCACAGCAG 59.534 52.381 0.00 0.00 0.00 4.24
66 67 1.071542 TCTTCATCGGTTTCCACAGCA 59.928 47.619 0.00 0.00 0.00 4.41
67 68 1.808411 TCTTCATCGGTTTCCACAGC 58.192 50.000 0.00 0.00 0.00 4.40
68 69 4.320494 CCTTTTCTTCATCGGTTTCCACAG 60.320 45.833 0.00 0.00 0.00 3.66
69 70 3.568007 CCTTTTCTTCATCGGTTTCCACA 59.432 43.478 0.00 0.00 0.00 4.17
70 71 3.057526 CCCTTTTCTTCATCGGTTTCCAC 60.058 47.826 0.00 0.00 0.00 4.02
71 72 3.153919 CCCTTTTCTTCATCGGTTTCCA 58.846 45.455 0.00 0.00 0.00 3.53
72 73 2.094700 GCCCTTTTCTTCATCGGTTTCC 60.095 50.000 0.00 0.00 0.00 3.13
73 74 2.556622 TGCCCTTTTCTTCATCGGTTTC 59.443 45.455 0.00 0.00 0.00 2.78
74 75 2.593026 TGCCCTTTTCTTCATCGGTTT 58.407 42.857 0.00 0.00 0.00 3.27
75 76 2.286365 TGCCCTTTTCTTCATCGGTT 57.714 45.000 0.00 0.00 0.00 4.44
76 77 2.025887 AGATGCCCTTTTCTTCATCGGT 60.026 45.455 0.00 0.00 40.01 4.69
77 78 2.615912 GAGATGCCCTTTTCTTCATCGG 59.384 50.000 0.00 0.00 40.01 4.18
78 79 2.286294 CGAGATGCCCTTTTCTTCATCG 59.714 50.000 0.00 0.00 40.01 3.84
79 80 2.032675 GCGAGATGCCCTTTTCTTCATC 59.967 50.000 0.00 0.00 37.76 2.92
80 81 2.019984 GCGAGATGCCCTTTTCTTCAT 58.980 47.619 0.00 0.00 37.76 2.57
81 82 1.453155 GCGAGATGCCCTTTTCTTCA 58.547 50.000 0.00 0.00 37.76 3.02
82 83 0.375106 CGCGAGATGCCCTTTTCTTC 59.625 55.000 0.00 0.00 42.08 2.87
83 84 0.321653 ACGCGAGATGCCCTTTTCTT 60.322 50.000 15.93 0.00 42.08 2.52
84 85 0.321653 AACGCGAGATGCCCTTTTCT 60.322 50.000 15.93 0.00 42.08 2.52
85 86 0.179189 CAACGCGAGATGCCCTTTTC 60.179 55.000 15.93 0.00 42.08 2.29
86 87 1.875963 CAACGCGAGATGCCCTTTT 59.124 52.632 15.93 0.00 42.08 2.27
87 88 3.578456 CAACGCGAGATGCCCTTT 58.422 55.556 15.93 0.00 42.08 3.11
93 94 1.280982 ATACTGTGCAACGCGAGATG 58.719 50.000 15.93 10.19 42.39 2.90
94 95 1.660607 CAATACTGTGCAACGCGAGAT 59.339 47.619 15.93 0.00 42.39 2.75
95 96 1.067693 CAATACTGTGCAACGCGAGA 58.932 50.000 15.93 0.00 42.39 4.04
96 97 0.790207 ACAATACTGTGCAACGCGAG 59.210 50.000 15.93 5.94 42.39 5.03
97 98 0.787787 GACAATACTGTGCAACGCGA 59.212 50.000 15.93 0.00 42.39 5.87
98 99 0.179225 GGACAATACTGTGCAACGCG 60.179 55.000 3.53 3.53 43.07 6.01
99 100 0.168128 GGGACAATACTGTGCAACGC 59.832 55.000 0.00 0.00 45.23 4.84
100 101 1.518325 TGGGACAATACTGTGCAACG 58.482 50.000 0.00 0.00 45.23 4.10
114 115 3.907894 TTTGCGAAACAGTAATGGGAC 57.092 42.857 0.00 0.00 0.00 4.46
115 116 4.920640 TTTTTGCGAAACAGTAATGGGA 57.079 36.364 0.00 0.00 0.00 4.37
150 151 0.944386 CCGGCAAATCGAGTAATGGG 59.056 55.000 0.00 0.00 0.00 4.00
156 157 0.676782 CTTTCCCCGGCAAATCGAGT 60.677 55.000 0.00 0.00 0.00 4.18
158 159 0.675522 GTCTTTCCCCGGCAAATCGA 60.676 55.000 0.00 0.00 0.00 3.59
167 168 2.810439 TTTTGCAATGTCTTTCCCCG 57.190 45.000 0.00 0.00 0.00 5.73
168 169 6.036577 TCTTATTTTGCAATGTCTTTCCCC 57.963 37.500 0.00 0.00 0.00 4.81
171 172 9.630098 TTCTCATCTTATTTTGCAATGTCTTTC 57.370 29.630 0.00 0.00 0.00 2.62
175 176 9.028185 GGAATTCTCATCTTATTTTGCAATGTC 57.972 33.333 0.00 0.00 0.00 3.06
176 177 8.533657 TGGAATTCTCATCTTATTTTGCAATGT 58.466 29.630 0.00 0.00 0.00 2.71
177 178 8.936070 TGGAATTCTCATCTTATTTTGCAATG 57.064 30.769 0.00 0.00 0.00 2.82
178 179 9.760077 GATGGAATTCTCATCTTATTTTGCAAT 57.240 29.630 20.71 0.00 38.30 3.56
179 180 7.916977 CGATGGAATTCTCATCTTATTTTGCAA 59.083 33.333 23.17 0.00 38.95 4.08
184 186 8.348507 GCTTTCGATGGAATTCTCATCTTATTT 58.651 33.333 23.17 1.56 38.95 1.40
186 188 6.994496 TGCTTTCGATGGAATTCTCATCTTAT 59.006 34.615 23.17 2.62 38.95 1.73
190 192 4.554330 GCTGCTTTCGATGGAATTCTCATC 60.554 45.833 19.19 19.19 38.04 2.92
199 201 1.896220 ACTTTGCTGCTTTCGATGGA 58.104 45.000 0.00 0.00 0.00 3.41
205 207 5.163814 CCATAGACACTACTTTGCTGCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
214 216 5.546499 TCCCTTGTTCCATAGACACTACTTT 59.454 40.000 0.00 0.00 0.00 2.66
215 217 5.091552 TCCCTTGTTCCATAGACACTACTT 58.908 41.667 0.00 0.00 0.00 2.24
216 218 4.684724 TCCCTTGTTCCATAGACACTACT 58.315 43.478 0.00 0.00 0.00 2.57
217 219 5.416271 TTCCCTTGTTCCATAGACACTAC 57.584 43.478 0.00 0.00 0.00 2.73
218 220 5.104527 CCATTCCCTTGTTCCATAGACACTA 60.105 44.000 0.00 0.00 0.00 2.74
219 221 4.324563 CCATTCCCTTGTTCCATAGACACT 60.325 45.833 0.00 0.00 0.00 3.55
221 223 3.849574 TCCATTCCCTTGTTCCATAGACA 59.150 43.478 0.00 0.00 0.00 3.41
224 226 6.576185 CAAATTCCATTCCCTTGTTCCATAG 58.424 40.000 0.00 0.00 0.00 2.23
227 229 3.007831 GCAAATTCCATTCCCTTGTTCCA 59.992 43.478 0.00 0.00 0.00 3.53
231 233 4.102996 AGTTTGCAAATTCCATTCCCTTGT 59.897 37.500 16.21 0.00 0.00 3.16
253 255 1.271379 TCTTGCTTGCTCCAATTGCAG 59.729 47.619 0.00 0.00 41.71 4.41
255 257 2.334838 CTTCTTGCTTGCTCCAATTGC 58.665 47.619 0.00 0.00 0.00 3.56
256 258 2.334838 GCTTCTTGCTTGCTCCAATTG 58.665 47.619 0.00 0.00 38.95 2.32
275 280 3.793144 CAGCGCTCGGTGGAAAGC 61.793 66.667 7.13 0.00 39.65 3.51
284 291 1.953353 CTGTTTCTCTGCAGCGCTCG 61.953 60.000 7.13 4.46 0.00 5.03
287 294 1.224069 TGTCTGTTTCTCTGCAGCGC 61.224 55.000 9.47 0.00 33.09 5.92
295 302 4.506217 CGTTTCTCGTTTGTCTGTTTCTC 58.494 43.478 0.00 0.00 34.52 2.87
297 304 3.027029 GCGTTTCTCGTTTGTCTGTTTC 58.973 45.455 0.00 0.00 42.13 2.78
303 310 0.384353 GCCTGCGTTTCTCGTTTGTC 60.384 55.000 0.00 0.00 42.13 3.18
309 316 1.227999 TTCCTTGCCTGCGTTTCTCG 61.228 55.000 0.00 0.00 43.12 4.04
310 317 0.951558 TTTCCTTGCCTGCGTTTCTC 59.048 50.000 0.00 0.00 0.00 2.87
311 318 0.954452 CTTTCCTTGCCTGCGTTTCT 59.046 50.000 0.00 0.00 0.00 2.52
312 319 0.039165 CCTTTCCTTGCCTGCGTTTC 60.039 55.000 0.00 0.00 0.00 2.78
338 345 2.032528 TGGAACTGCAAGGCCTCG 59.967 61.111 5.23 0.00 39.30 4.63
347 354 1.683385 GGAATATTGCCCTGGAACTGC 59.317 52.381 0.00 0.00 0.00 4.40
352 359 2.158325 GGGAATGGAATATTGCCCTGGA 60.158 50.000 4.35 0.00 33.99 3.86
353 360 2.250924 GGGAATGGAATATTGCCCTGG 58.749 52.381 4.35 0.00 33.99 4.45
357 364 1.613437 CGTGGGGAATGGAATATTGCC 59.387 52.381 4.35 2.02 38.58 4.52
394 401 2.517484 CTAGCTCAGCACAGCAGGCA 62.517 60.000 0.00 0.00 42.40 4.75
397 404 1.814586 GCCTAGCTCAGCACAGCAG 60.815 63.158 0.00 5.01 42.40 4.24
448 463 3.721706 GGGTGTCCAGCCTGGGAG 61.722 72.222 11.68 0.00 45.14 4.30
456 471 2.603473 TCCGGTCAGGGTGTCCAG 60.603 66.667 0.00 0.00 41.52 3.86
457 472 2.603473 CTCCGGTCAGGGTGTCCA 60.603 66.667 0.00 0.00 41.52 4.02
458 473 3.391382 CCTCCGGTCAGGGTGTCC 61.391 72.222 0.00 0.00 41.52 4.02
471 489 0.471617 ATATGCTGTGCTGGACCTCC 59.528 55.000 0.00 0.00 0.00 4.30
493 511 4.968080 ACAATACCAACGGGGGTAGTAATA 59.032 41.667 12.22 0.00 46.07 0.98
494 512 3.781965 ACAATACCAACGGGGGTAGTAAT 59.218 43.478 12.22 1.03 46.07 1.89
495 513 3.180507 ACAATACCAACGGGGGTAGTAA 58.819 45.455 12.22 0.00 46.07 2.24
496 514 2.831565 ACAATACCAACGGGGGTAGTA 58.168 47.619 12.22 0.00 46.07 1.82
497 515 1.660242 ACAATACCAACGGGGGTAGT 58.340 50.000 12.22 7.59 46.07 2.73
498 516 2.158914 GGTACAATACCAACGGGGGTAG 60.159 54.545 12.22 3.83 46.07 3.18
510 528 3.516700 ACCTACTGGTGGTGGTACAATAC 59.483 47.826 0.00 0.00 46.51 1.89
511 529 3.793712 ACCTACTGGTGGTGGTACAATA 58.206 45.455 0.00 0.00 46.51 1.90
528 546 2.093106 GAAGAGAAGACGAGGCACCTA 58.907 52.381 0.00 0.00 0.00 3.08
529 547 0.892063 GAAGAGAAGACGAGGCACCT 59.108 55.000 0.00 0.00 0.00 4.00
530 548 0.108567 GGAAGAGAAGACGAGGCACC 60.109 60.000 0.00 0.00 0.00 5.01
532 550 0.891373 CAGGAAGAGAAGACGAGGCA 59.109 55.000 0.00 0.00 0.00 4.75
534 552 0.174617 GGCAGGAAGAGAAGACGAGG 59.825 60.000 0.00 0.00 0.00 4.63
536 554 1.883732 CGGCAGGAAGAGAAGACGA 59.116 57.895 0.00 0.00 0.00 4.20
537 555 1.807573 GCGGCAGGAAGAGAAGACG 60.808 63.158 0.00 0.00 0.00 4.18
538 556 1.448717 GGCGGCAGGAAGAGAAGAC 60.449 63.158 3.07 0.00 0.00 3.01
539 557 1.480212 TTGGCGGCAGGAAGAGAAGA 61.480 55.000 12.87 0.00 0.00 2.87
540 558 1.003355 TTGGCGGCAGGAAGAGAAG 60.003 57.895 12.87 0.00 0.00 2.85
541 559 1.003355 CTTGGCGGCAGGAAGAGAA 60.003 57.895 16.59 0.00 0.00 2.87
542 560 1.267574 ATCTTGGCGGCAGGAAGAGA 61.268 55.000 27.03 19.25 0.00 3.10
543 561 0.465705 TATCTTGGCGGCAGGAAGAG 59.534 55.000 27.03 14.33 0.00 2.85
544 562 0.908910 TTATCTTGGCGGCAGGAAGA 59.091 50.000 27.03 19.99 0.00 2.87
545 563 1.401905 GTTTATCTTGGCGGCAGGAAG 59.598 52.381 27.03 15.10 0.00 3.46
546 564 1.459450 GTTTATCTTGGCGGCAGGAA 58.541 50.000 27.03 13.76 0.00 3.36
565 583 8.911247 TTCTTTTCTTTTCTTCTTTTTCTCCG 57.089 30.769 0.00 0.00 0.00 4.63
573 591 9.348476 AGCAGAGTATTCTTTTCTTTTCTTCTT 57.652 29.630 0.00 0.00 0.00 2.52
597 615 3.056250 TGCTATTCTATGCTGCCTCTAGC 60.056 47.826 0.00 2.45 43.95 3.42
598 616 4.797800 TGCTATTCTATGCTGCCTCTAG 57.202 45.455 0.00 0.00 0.00 2.43
599 617 4.020751 CCTTGCTATTCTATGCTGCCTCTA 60.021 45.833 0.00 0.00 0.00 2.43
600 618 3.244491 CCTTGCTATTCTATGCTGCCTCT 60.244 47.826 0.00 0.00 0.00 3.69
601 619 3.072944 CCTTGCTATTCTATGCTGCCTC 58.927 50.000 0.00 0.00 0.00 4.70
618 636 1.081242 GACACATTGGCGTGCCTTG 60.081 57.895 12.84 11.93 40.73 3.61
631 649 4.293648 CACCGGACTGGCGACACA 62.294 66.667 9.46 0.00 43.94 3.72
667 707 0.998945 AGAGGGGAGGAGAGGAGAGG 60.999 65.000 0.00 0.00 0.00 3.69
668 708 0.478507 GAGAGGGGAGGAGAGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
669 709 0.996762 GGAGAGGGGAGGAGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
670 710 0.998945 AGGAGAGGGGAGGAGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
671 711 0.996762 GAGGAGAGGGGAGGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
672 712 1.541672 GAGGAGAGGGGAGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
673 713 1.150536 CGAGGAGAGGGGAGGAGAG 59.849 68.421 0.00 0.00 0.00 3.20
674 714 3.063197 GCGAGGAGAGGGGAGGAGA 62.063 68.421 0.00 0.00 0.00 3.71
675 715 2.520741 GCGAGGAGAGGGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
676 716 4.507916 CGCGAGGAGAGGGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
677 717 4.507916 TCGCGAGGAGAGGGGAGG 62.508 72.222 3.71 0.00 0.00 4.30
678 718 3.213402 GTCGCGAGGAGAGGGGAG 61.213 72.222 10.24 0.00 0.00 4.30
730 770 0.661483 GCTGTCCAAAGCGAGCAAAC 60.661 55.000 0.00 0.00 32.56 2.93
815 904 0.041238 CTAGTCCTGGTCCTGGTCCA 59.959 60.000 12.16 12.16 0.00 4.02
852 947 1.588082 CTTTGGTGTGATGGGCTGC 59.412 57.895 0.00 0.00 0.00 5.25
855 950 2.568090 CGCTTTGGTGTGATGGGC 59.432 61.111 0.00 0.00 0.00 5.36
924 1022 0.939577 CTTGGTGTGTCCGACTCGTG 60.940 60.000 0.00 0.00 39.52 4.35
925 1023 1.362717 CTTGGTGTGTCCGACTCGT 59.637 57.895 0.00 0.00 39.52 4.18
926 1024 2.022129 GCTTGGTGTGTCCGACTCG 61.022 63.158 0.00 0.00 39.52 4.18
935 1033 2.141517 CTGTCTTGAGAGCTTGGTGTG 58.858 52.381 0.00 0.00 0.00 3.82
939 1037 1.345741 TGGTCTGTCTTGAGAGCTTGG 59.654 52.381 0.00 0.00 40.48 3.61
943 1041 1.789506 GTGTGGTCTGTCTTGAGAGC 58.210 55.000 0.00 0.00 40.29 4.09
945 1043 0.032130 GCGTGTGGTCTGTCTTGAGA 59.968 55.000 0.00 0.00 0.00 3.27
946 1044 0.946221 GGCGTGTGGTCTGTCTTGAG 60.946 60.000 0.00 0.00 0.00 3.02
947 1045 1.069090 GGCGTGTGGTCTGTCTTGA 59.931 57.895 0.00 0.00 0.00 3.02
949 1047 1.227556 GTGGCGTGTGGTCTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
996 1102 4.090588 TCCACGACGCCCATTCCC 62.091 66.667 0.00 0.00 0.00 3.97
997 1103 2.511600 CTCCACGACGCCCATTCC 60.512 66.667 0.00 0.00 0.00 3.01
1032 1138 4.247380 GAGGAGCCCCTGCCGATG 62.247 72.222 0.00 0.00 44.53 3.84
1173 1279 4.778415 AGGCAGCGCACGACGTAG 62.778 66.667 11.47 0.00 46.11 3.51
1368 1477 3.414700 GCCTTGACGTCGCAGTGG 61.415 66.667 11.62 9.11 0.00 4.00
1495 1613 3.499737 CTCGGGCGCCATGAACAC 61.500 66.667 30.85 7.76 0.00 3.32
1545 1663 2.734723 CCGAGCGCCCATATGTCG 60.735 66.667 2.29 4.63 0.00 4.35
1563 1681 0.873312 CCATCTCGATGACGGTGCAG 60.873 60.000 8.42 0.00 41.20 4.41
1731 1849 3.057547 CTCTGCCGTCCACCTCTCG 62.058 68.421 0.00 0.00 0.00 4.04
1735 1853 3.699894 CTGCTCTGCCGTCCACCT 61.700 66.667 0.00 0.00 0.00 4.00
1786 1904 4.814294 ATTGGACGTCGAGGCGGC 62.814 66.667 9.92 0.00 39.56 6.53
1795 1913 1.671054 CTGGCACGGAATTGGACGT 60.671 57.895 0.00 0.00 45.25 4.34
1845 1963 1.144565 CCTGATCGAGCACGCTCTTG 61.145 60.000 16.51 2.81 40.69 3.02
1854 1972 2.202987 CACAGGGCCTGATCGAGC 60.203 66.667 38.99 0.00 35.18 5.03
2009 2127 2.249309 GTTCGGTGTCGTCGTCGA 59.751 61.111 0.00 0.00 44.12 4.20
2010 2128 2.051971 TGTTCGGTGTCGTCGTCG 60.052 61.111 0.00 0.00 37.69 5.12
2011 2129 2.352333 CGTGTTCGGTGTCGTCGTC 61.352 63.158 0.00 0.00 37.69 4.20
2012 2130 2.352686 CGTGTTCGGTGTCGTCGT 60.353 61.111 0.00 0.00 37.69 4.34
2013 2131 2.051971 TCGTGTTCGGTGTCGTCG 60.052 61.111 0.00 0.00 37.69 5.12
2014 2132 2.362800 GCTCGTGTTCGGTGTCGTC 61.363 63.158 0.00 0.00 37.69 4.20
2015 2133 2.354305 GCTCGTGTTCGGTGTCGT 60.354 61.111 0.00 0.00 37.69 4.34
2018 2136 2.029073 CTGGCTCGTGTTCGGTGT 59.971 61.111 0.00 0.00 37.69 4.16
2020 2138 2.731691 ATTGCTGGCTCGTGTTCGGT 62.732 55.000 0.00 0.00 37.69 4.69
2025 2143 3.058160 GGCATTGCTGGCTCGTGT 61.058 61.111 8.82 0.00 44.27 4.49
2026 2144 4.170062 CGGCATTGCTGGCTCGTG 62.170 66.667 9.73 0.00 45.42 4.35
2143 2279 3.667429 GATCGCCGTTGCCTTGTGC 62.667 63.158 0.00 0.00 41.77 4.57
2145 2281 3.118454 CGATCGCCGTTGCCTTGT 61.118 61.111 0.26 0.00 0.00 3.16
2148 2284 3.454573 TACCGATCGCCGTTGCCT 61.455 61.111 10.32 0.00 36.31 4.75
2150 2286 3.613702 CGTACCGATCGCCGTTGC 61.614 66.667 10.32 0.00 36.31 4.17
2154 2290 2.428569 CCATCGTACCGATCGCCG 60.429 66.667 10.32 11.41 45.19 6.46
2163 2299 2.890474 CTGCCCGTGCCATCGTAC 60.890 66.667 0.00 0.00 36.33 3.67
2192 2328 1.789078 ATTTCCATCATCGCTGCGCC 61.789 55.000 18.65 0.00 0.00 6.53
2208 2344 2.159572 GCAATCGCTAACCACGTGATTT 60.160 45.455 19.30 12.21 38.99 2.17
2229 2368 2.159627 GCTTGTGATTGGAACGGTACTG 59.840 50.000 0.00 0.00 0.00 2.74
2269 2408 1.541147 ACAAGCGAAACATGACATGGG 59.459 47.619 19.39 6.97 33.60 4.00
2273 2412 1.234821 GGGACAAGCGAAACATGACA 58.765 50.000 0.00 0.00 0.00 3.58
2328 2467 2.749839 GGCATGGTGGCGCTGTAA 60.750 61.111 7.64 0.00 31.79 2.41
2337 2476 2.025887 AGGAAGAAAGGTAGGCATGGTG 60.026 50.000 0.00 0.00 0.00 4.17
2338 2477 2.239907 GAGGAAGAAAGGTAGGCATGGT 59.760 50.000 0.00 0.00 0.00 3.55
2340 2479 2.422093 GGGAGGAAGAAAGGTAGGCATG 60.422 54.545 0.00 0.00 0.00 4.06
2342 2481 1.286248 GGGAGGAAGAAAGGTAGGCA 58.714 55.000 0.00 0.00 0.00 4.75
2347 2486 2.168666 GACGCGGGAGGAAGAAAGGT 62.169 60.000 12.47 0.00 0.00 3.50
2348 2487 1.448013 GACGCGGGAGGAAGAAAGG 60.448 63.158 12.47 0.00 0.00 3.11
2376 2544 0.533032 GAGTACTCACCACTCCTGCC 59.467 60.000 18.20 0.00 37.11 4.85
2386 2554 1.748122 TCGGAGCCGGAGTACTCAC 60.748 63.158 23.91 12.65 40.25 3.51
2387 2555 1.748122 GTCGGAGCCGGAGTACTCA 60.748 63.158 23.91 0.00 40.25 3.41
2388 2556 1.031029 AAGTCGGAGCCGGAGTACTC 61.031 60.000 14.87 14.87 40.25 2.59
2389 2557 0.254178 TAAGTCGGAGCCGGAGTACT 59.746 55.000 5.05 0.00 40.25 2.73
2396 2564 3.763319 CGTGTTAAGTCGGAGCCG 58.237 61.111 1.74 1.74 41.35 5.52
2403 2571 0.247145 CATTCGCGCCGTGTTAAGTC 60.247 55.000 0.00 0.00 0.00 3.01
2428 2600 0.533755 CCCTCCTCCGCAATGTCATC 60.534 60.000 0.00 0.00 0.00 2.92
2430 2602 1.198094 TTCCCTCCTCCGCAATGTCA 61.198 55.000 0.00 0.00 0.00 3.58
2438 2634 2.441822 GATCCGCATTCCCTCCTCCG 62.442 65.000 0.00 0.00 0.00 4.63
2472 2672 0.589223 GCATGACCGACCAAACGAAA 59.411 50.000 0.00 0.00 35.09 3.46
2476 2676 1.225376 TGACGCATGACCGACCAAAC 61.225 55.000 0.00 0.00 0.00 2.93
2515 2715 4.760047 AGCCGCAACCACCGCTAG 62.760 66.667 0.00 0.00 0.00 3.42
2590 2795 1.363807 CGCCACTCACTCACTCACA 59.636 57.895 0.00 0.00 0.00 3.58
2594 2799 2.645567 CGACGCCACTCACTCACT 59.354 61.111 0.00 0.00 0.00 3.41
2595 2800 3.106407 GCGACGCCACTCACTCAC 61.106 66.667 9.14 0.00 0.00 3.51
2625 2830 1.728490 GAGCAAACCATCCATCCCGC 61.728 60.000 0.00 0.00 0.00 6.13
2630 2835 0.036388 ACGTCGAGCAAACCATCCAT 60.036 50.000 0.00 0.00 0.00 3.41
2631 2836 0.948623 CACGTCGAGCAAACCATCCA 60.949 55.000 0.00 0.00 0.00 3.41
2632 2837 1.635663 CCACGTCGAGCAAACCATCC 61.636 60.000 0.00 0.00 0.00 3.51
2634 2839 2.325082 GCCACGTCGAGCAAACCAT 61.325 57.895 0.00 0.00 0.00 3.55
2635 2840 2.970324 GCCACGTCGAGCAAACCA 60.970 61.111 0.00 0.00 0.00 3.67
2662 2878 4.427661 ACTCAGCCAGCTCGCGAC 62.428 66.667 3.71 2.10 0.00 5.19
2672 2888 2.187946 CATCCACCCGACTCAGCC 59.812 66.667 0.00 0.00 0.00 4.85
2698 2914 4.060667 AATTGGTGGAGGGGCGGG 62.061 66.667 0.00 0.00 0.00 6.13
2699 2915 2.755469 CAATTGGTGGAGGGGCGG 60.755 66.667 0.00 0.00 0.00 6.13
2728 2944 2.029844 GCTCACACAAGCGTCCCTC 61.030 63.158 0.00 0.00 31.56 4.30
2741 2957 0.174617 GAGGTAGGTGCTCTGCTCAC 59.825 60.000 0.00 0.00 0.00 3.51
2742 2958 1.315981 CGAGGTAGGTGCTCTGCTCA 61.316 60.000 0.00 0.00 0.00 4.26
2743 2959 1.435515 CGAGGTAGGTGCTCTGCTC 59.564 63.158 0.00 0.00 0.00 4.26
2751 2974 2.586079 CATGCGGCGAGGTAGGTG 60.586 66.667 12.98 0.00 0.00 4.00
2851 3074 2.527951 AATCCACACTCCGCTCTGCC 62.528 60.000 0.00 0.00 0.00 4.85
2859 3082 4.693566 TCAACGATACAAAATCCACACTCC 59.306 41.667 0.00 0.00 0.00 3.85
2861 3084 4.151689 CGTCAACGATACAAAATCCACACT 59.848 41.667 0.00 0.00 43.02 3.55
2863 3086 4.059511 ACGTCAACGATACAAAATCCACA 58.940 39.130 9.88 0.00 43.02 4.17
2864 3087 4.634991 GACGTCAACGATACAAAATCCAC 58.365 43.478 11.55 0.00 43.02 4.02
2865 3088 3.365520 CGACGTCAACGATACAAAATCCA 59.634 43.478 17.16 0.00 43.02 3.41
2867 3090 4.259292 CCTCGACGTCAACGATACAAAATC 60.259 45.833 17.16 0.00 43.02 2.17
2868 3091 3.611113 CCTCGACGTCAACGATACAAAAT 59.389 43.478 17.16 0.00 43.02 1.82
2897 3163 3.222354 AAGTCGGACGGCTGGACAC 62.222 63.158 14.03 0.00 33.18 3.67
2904 3170 2.737376 GACCACAAGTCGGACGGC 60.737 66.667 1.89 0.00 35.30 5.68
2934 3203 2.432972 TTACCTCGCGGCCGAAAC 60.433 61.111 33.48 10.82 43.87 2.78
2936 3205 3.009192 ATGTTACCTCGCGGCCGAA 62.009 57.895 33.48 15.60 43.87 4.30
2938 3207 3.261951 CATGTTACCTCGCGGCCG 61.262 66.667 24.05 24.05 0.00 6.13
2939 3208 3.573491 GCATGTTACCTCGCGGCC 61.573 66.667 6.13 0.00 0.00 6.13
2983 3256 3.735029 GCTCTGCAGTGCCAGTGC 61.735 66.667 26.50 17.60 44.57 4.40
2984 3257 2.281276 TGCTCTGCAGTGCCAGTG 60.281 61.111 31.61 11.61 33.32 3.66
2985 3258 2.281345 GTGCTCTGCAGTGCCAGT 60.281 61.111 31.61 0.00 40.08 4.00
2987 3260 2.281276 CTGTGCTCTGCAGTGCCA 60.281 61.111 31.61 26.29 40.08 4.92
2988 3261 3.735029 GCTGTGCTCTGCAGTGCC 61.735 66.667 31.61 23.80 40.08 5.01
2989 3262 2.976350 TGCTGTGCTCTGCAGTGC 60.976 61.111 29.18 29.18 42.06 4.40
2990 3263 1.235281 ATGTGCTGTGCTCTGCAGTG 61.235 55.000 18.89 12.95 46.11 3.66
2991 3264 0.322648 TATGTGCTGTGCTCTGCAGT 59.677 50.000 18.89 13.49 46.11 4.40
2992 3265 1.007580 CTATGTGCTGTGCTCTGCAG 58.992 55.000 18.89 7.63 46.11 4.41
2993 3266 0.392060 CCTATGTGCTGTGCTCTGCA 60.392 55.000 15.21 15.21 44.05 4.41
2994 3267 0.107993 TCCTATGTGCTGTGCTCTGC 60.108 55.000 10.33 10.33 38.66 4.26
3043 3333 1.227645 TCACAGTCACAGCCACAGC 60.228 57.895 0.00 0.00 40.32 4.40
3044 3334 1.217585 CGTCACAGTCACAGCCACAG 61.218 60.000 0.00 0.00 0.00 3.66
3045 3335 1.227234 CGTCACAGTCACAGCCACA 60.227 57.895 0.00 0.00 0.00 4.17
3046 3336 1.956170 CCGTCACAGTCACAGCCAC 60.956 63.158 0.00 0.00 0.00 5.01
3047 3337 2.421314 CCGTCACAGTCACAGCCA 59.579 61.111 0.00 0.00 0.00 4.75
3048 3338 1.956170 CACCGTCACAGTCACAGCC 60.956 63.158 0.00 0.00 0.00 4.85
3049 3339 1.067416 TCACCGTCACAGTCACAGC 59.933 57.895 0.00 0.00 0.00 4.40
3050 3340 0.934901 CGTCACCGTCACAGTCACAG 60.935 60.000 0.00 0.00 0.00 3.66
3051 3341 1.065109 CGTCACCGTCACAGTCACA 59.935 57.895 0.00 0.00 0.00 3.58
3052 3342 0.248743 TTCGTCACCGTCACAGTCAC 60.249 55.000 0.00 0.00 35.01 3.67
3053 3343 0.456628 TTTCGTCACCGTCACAGTCA 59.543 50.000 0.00 0.00 35.01 3.41
3054 3344 1.129326 CTTTCGTCACCGTCACAGTC 58.871 55.000 0.00 0.00 35.01 3.51
3062 3352 1.194547 CACATGGAACTTTCGTCACCG 59.805 52.381 0.00 0.00 0.00 4.94
3063 3353 1.535462 CCACATGGAACTTTCGTCACC 59.465 52.381 0.00 0.00 37.39 4.02
3076 3366 2.562912 GCACGCTTGTCCACATGG 59.437 61.111 0.00 0.00 0.00 3.66
3149 3440 4.797275 GCCCAACACAGGAAGAAAAATCTG 60.797 45.833 0.00 0.00 0.00 2.90
3162 3461 2.987547 CAGGCCTGCCCAACACAG 60.988 66.667 22.33 0.00 36.58 3.66
3226 3529 3.056328 GAAGCAACCCTCGCCCAC 61.056 66.667 0.00 0.00 0.00 4.61
3228 3531 3.056328 GTGAAGCAACCCTCGCCC 61.056 66.667 0.00 0.00 0.00 6.13
3229 3532 3.423154 CGTGAAGCAACCCTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
3230 3533 2.665185 ACGTGAAGCAACCCTCGC 60.665 61.111 0.00 0.00 0.00 5.03
3233 3536 2.972505 CGCACGTGAAGCAACCCT 60.973 61.111 22.23 0.00 0.00 4.34
3254 3574 1.923356 ACTTTTCATGCCCGGAACAT 58.077 45.000 0.73 2.98 0.00 2.71
3264 3584 4.005650 TCAGAAGCTGGCTACTTTTCATG 58.994 43.478 0.00 0.00 31.51 3.07
3294 3614 3.534554 TGGCATCAATGTAGCAGTACAG 58.465 45.455 0.00 0.00 42.53 2.74
3296 3616 4.662145 GTTTGGCATCAATGTAGCAGTAC 58.338 43.478 0.00 0.00 32.28 2.73
3297 3617 3.373748 CGTTTGGCATCAATGTAGCAGTA 59.626 43.478 0.00 0.00 32.28 2.74
3298 3618 2.162208 CGTTTGGCATCAATGTAGCAGT 59.838 45.455 0.00 0.00 32.28 4.40
3299 3619 2.789208 CGTTTGGCATCAATGTAGCAG 58.211 47.619 0.00 0.00 32.28 4.24
3301 3621 1.548986 GCGTTTGGCATCAATGTAGC 58.451 50.000 0.00 0.00 42.87 3.58
3314 3634 3.108144 GGCACATAATTAGCTGCGTTTG 58.892 45.455 0.00 0.00 0.00 2.93
3328 3648 1.614850 GGGGAGGAAAAACGGCACATA 60.615 52.381 0.00 0.00 0.00 2.29
3341 3661 1.281419 TTTAGCACATTCGGGGAGGA 58.719 50.000 0.00 0.00 0.00 3.71
3342 3662 2.122783 TTTTAGCACATTCGGGGAGG 57.877 50.000 0.00 0.00 0.00 4.30
3364 3684 1.227380 GCTGACATAGTGCCCCGAG 60.227 63.158 0.00 0.00 0.00 4.63
3369 3691 0.391130 TGTTCCGCTGACATAGTGCC 60.391 55.000 0.00 0.00 35.54 5.01
3373 3695 1.945387 AGCATGTTCCGCTGACATAG 58.055 50.000 0.00 0.00 38.60 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.