Multiple sequence alignment - TraesCS7A01G335800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G335800 chr7A 100.000 3086 0 0 1 3086 491319794 491322879 0.000000e+00 5699
1 TraesCS7A01G335800 chr6A 81.862 2514 409 31 607 3086 496587754 496590254 0.000000e+00 2073
2 TraesCS7A01G335800 chr6A 90.000 110 8 3 413 519 266098210 266098101 4.150000e-29 139
3 TraesCS7A01G335800 chr2A 81.853 2364 389 26 754 3086 204932736 204935090 0.000000e+00 1953
4 TraesCS7A01G335800 chr6D 77.517 1490 288 27 1627 3086 37737815 37739287 0.000000e+00 852
5 TraesCS7A01G335800 chr6D 82.139 991 164 11 603 1587 37736823 37737806 0.000000e+00 837
6 TraesCS7A01G335800 chr6D 85.915 142 16 4 381 519 340278228 340278088 6.890000e-32 148
7 TraesCS7A01G335800 chr1A 87.429 525 57 8 1 522 572388073 572387555 2.050000e-166 595
8 TraesCS7A01G335800 chr1A 90.704 398 33 4 6 402 279828605 279828211 7.580000e-146 527
9 TraesCS7A01G335800 chr5B 85.741 540 57 11 1 523 285836802 285836266 1.250000e-153 553
10 TraesCS7A01G335800 chr5B 82.051 312 28 11 190 487 9269412 9269709 1.110000e-59 241
11 TraesCS7A01G335800 chr1D 85.847 537 55 12 1 519 5530410 5529877 4.500000e-153 551
12 TraesCS7A01G335800 chr1D 89.604 404 37 4 1 402 332396764 332396364 2.750000e-140 508
13 TraesCS7A01G335800 chr1D 72.790 724 181 15 836 1551 365283542 365284257 6.660000e-57 231
14 TraesCS7A01G335800 chr3A 85.343 539 55 13 1 519 492326476 492325942 1.260000e-148 536
15 TraesCS7A01G335800 chr2D 85.130 538 58 15 1 519 640638304 640637770 5.860000e-147 531
16 TraesCS7A01G335800 chr2D 85.470 117 13 3 407 519 579000348 579000464 5.410000e-23 119
17 TraesCS7A01G335800 chr6B 90.000 400 37 2 1 400 584907555 584907951 5.900000e-142 514
18 TraesCS7A01G335800 chr5A 89.899 396 37 2 3 397 325925658 325926051 9.870000e-140 507
19 TraesCS7A01G335800 chr7B 85.714 140 17 2 382 519 212065121 212065259 8.920000e-31 145
20 TraesCS7A01G335800 chr3D 91.000 100 6 2 425 521 441449328 441449427 6.940000e-27 132
21 TraesCS7A01G335800 chr4D 85.827 127 12 5 407 528 484656483 484656608 2.500000e-26 130
22 TraesCS7A01G335800 chr7D 84.874 119 15 3 381 498 83382425 83382541 1.940000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G335800 chr7A 491319794 491322879 3085 False 5699.0 5699 100.000 1 3086 1 chr7A.!!$F1 3085
1 TraesCS7A01G335800 chr6A 496587754 496590254 2500 False 2073.0 2073 81.862 607 3086 1 chr6A.!!$F1 2479
2 TraesCS7A01G335800 chr2A 204932736 204935090 2354 False 1953.0 1953 81.853 754 3086 1 chr2A.!!$F1 2332
3 TraesCS7A01G335800 chr6D 37736823 37739287 2464 False 844.5 852 79.828 603 3086 2 chr6D.!!$F1 2483
4 TraesCS7A01G335800 chr1A 572387555 572388073 518 True 595.0 595 87.429 1 522 1 chr1A.!!$R2 521
5 TraesCS7A01G335800 chr5B 285836266 285836802 536 True 553.0 553 85.741 1 523 1 chr5B.!!$R1 522
6 TraesCS7A01G335800 chr1D 5529877 5530410 533 True 551.0 551 85.847 1 519 1 chr1D.!!$R1 518
7 TraesCS7A01G335800 chr1D 365283542 365284257 715 False 231.0 231 72.790 836 1551 1 chr1D.!!$F1 715
8 TraesCS7A01G335800 chr3A 492325942 492326476 534 True 536.0 536 85.343 1 519 1 chr3A.!!$R1 518
9 TraesCS7A01G335800 chr2D 640637770 640638304 534 True 531.0 531 85.130 1 519 1 chr2D.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 596 0.038455 ACTAGAGCTGGGTGTCGACT 59.962 55.0 17.92 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2417 0.040058 TGAACCGCCACTCCCTAGTA 59.96 55.0 0.0 0.0 33.48 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.227380 GATCACCAGCTACCGGCAG 60.227 63.158 0.00 0.00 44.79 4.85
97 98 4.265073 GACTGCCTTCCTCAATATGTGTT 58.735 43.478 0.00 0.00 0.00 3.32
106 107 7.202038 CCTTCCTCAATATGTGTTAGGAGATCA 60.202 40.741 0.00 0.00 37.63 2.92
114 115 2.359531 GTGTTAGGAGATCAGAGACCCG 59.640 54.545 0.00 0.00 0.00 5.28
117 118 0.324738 AGGAGATCAGAGACCCGCAA 60.325 55.000 0.00 0.00 0.00 4.85
121 122 0.247736 GATCAGAGACCCGCAAGTGT 59.752 55.000 0.00 0.00 0.00 3.55
133 134 2.095768 CCGCAAGTGTATCAACAACTGG 60.096 50.000 0.00 0.00 37.36 4.00
139 140 3.324846 AGTGTATCAACAACTGGAGCAGA 59.675 43.478 0.00 0.00 37.36 4.26
210 211 9.988350 GACGTGTGATGAAATATGAGTTTTTAT 57.012 29.630 0.00 0.00 0.00 1.40
342 348 1.199097 GTTGAATTCACGCCGAACCAT 59.801 47.619 7.89 0.00 36.12 3.55
360 366 2.093711 CCATGGCGAATATGGTCCGATA 60.094 50.000 0.00 0.00 40.15 2.92
373 379 1.099689 TCCGATATGCGCCGATATCA 58.900 50.000 21.12 6.24 35.74 2.15
379 385 0.610174 ATGCGCCGATATCAGGTCAT 59.390 50.000 4.18 9.55 0.00 3.06
384 390 3.607078 GCGCCGATATCAGGTCATTTTTC 60.607 47.826 0.00 0.00 0.00 2.29
388 406 3.559655 CGATATCAGGTCATTTTTCGCCA 59.440 43.478 3.12 0.00 0.00 5.69
393 411 4.367450 TCAGGTCATTTTTCGCCAAAAAG 58.633 39.130 7.97 1.47 43.22 2.27
394 412 3.494251 CAGGTCATTTTTCGCCAAAAAGG 59.506 43.478 7.48 7.48 43.22 3.11
457 486 1.594862 CGCCTTCAGAGCCGATTTTAG 59.405 52.381 0.00 0.00 0.00 1.85
485 515 2.124487 CCCCAGGCGGCGATTTTA 60.124 61.111 12.98 0.00 0.00 1.52
487 517 1.724582 CCCCAGGCGGCGATTTTAAG 61.725 60.000 12.98 0.00 0.00 1.85
523 560 2.171448 ACGGCTGGAGATGCTCTAAAAT 59.829 45.455 0.00 0.00 0.00 1.82
524 561 2.547211 CGGCTGGAGATGCTCTAAAATG 59.453 50.000 0.00 0.00 0.00 2.32
525 562 3.549794 GGCTGGAGATGCTCTAAAATGT 58.450 45.455 0.00 0.00 0.00 2.71
526 563 3.314635 GGCTGGAGATGCTCTAAAATGTG 59.685 47.826 0.00 0.00 0.00 3.21
527 564 3.944015 GCTGGAGATGCTCTAAAATGTGT 59.056 43.478 0.00 0.00 0.00 3.72
528 565 4.201891 GCTGGAGATGCTCTAAAATGTGTG 60.202 45.833 0.00 0.00 0.00 3.82
529 566 4.910195 TGGAGATGCTCTAAAATGTGTGT 58.090 39.130 0.00 0.00 0.00 3.72
530 567 4.937620 TGGAGATGCTCTAAAATGTGTGTC 59.062 41.667 0.00 0.00 0.00 3.67
531 568 4.033358 GGAGATGCTCTAAAATGTGTGTCG 59.967 45.833 0.00 0.00 0.00 4.35
532 569 4.569943 AGATGCTCTAAAATGTGTGTCGT 58.430 39.130 0.00 0.00 0.00 4.34
533 570 4.389992 AGATGCTCTAAAATGTGTGTCGTG 59.610 41.667 0.00 0.00 0.00 4.35
534 571 3.723260 TGCTCTAAAATGTGTGTCGTGA 58.277 40.909 0.00 0.00 0.00 4.35
535 572 4.123506 TGCTCTAAAATGTGTGTCGTGAA 58.876 39.130 0.00 0.00 0.00 3.18
536 573 4.211164 TGCTCTAAAATGTGTGTCGTGAAG 59.789 41.667 0.00 0.00 0.00 3.02
537 574 4.447724 GCTCTAAAATGTGTGTCGTGAAGA 59.552 41.667 0.00 0.00 0.00 2.87
538 575 5.050363 GCTCTAAAATGTGTGTCGTGAAGAA 60.050 40.000 0.00 0.00 0.00 2.52
539 576 6.511121 GCTCTAAAATGTGTGTCGTGAAGAAA 60.511 38.462 0.00 0.00 0.00 2.52
540 577 7.310072 TCTAAAATGTGTGTCGTGAAGAAAA 57.690 32.000 0.00 0.00 0.00 2.29
541 578 7.184106 TCTAAAATGTGTGTCGTGAAGAAAAC 58.816 34.615 0.00 0.00 0.00 2.43
542 579 5.560966 AAATGTGTGTCGTGAAGAAAACT 57.439 34.783 0.00 0.00 0.00 2.66
543 580 6.671614 AAATGTGTGTCGTGAAGAAAACTA 57.328 33.333 0.00 0.00 0.00 2.24
544 581 5.907197 ATGTGTGTCGTGAAGAAAACTAG 57.093 39.130 0.00 0.00 0.00 2.57
545 582 5.001237 TGTGTGTCGTGAAGAAAACTAGA 57.999 39.130 0.00 0.00 0.00 2.43
546 583 5.041287 TGTGTGTCGTGAAGAAAACTAGAG 58.959 41.667 0.00 0.00 0.00 2.43
547 584 4.049186 TGTGTCGTGAAGAAAACTAGAGC 58.951 43.478 0.00 0.00 0.00 4.09
548 585 4.202121 TGTGTCGTGAAGAAAACTAGAGCT 60.202 41.667 0.00 0.00 0.00 4.09
549 586 4.149046 GTGTCGTGAAGAAAACTAGAGCTG 59.851 45.833 0.00 0.00 0.00 4.24
550 587 3.675698 GTCGTGAAGAAAACTAGAGCTGG 59.324 47.826 0.00 0.00 0.00 4.85
551 588 2.996621 CGTGAAGAAAACTAGAGCTGGG 59.003 50.000 0.00 0.00 0.00 4.45
552 589 3.555168 CGTGAAGAAAACTAGAGCTGGGT 60.555 47.826 0.00 0.00 0.00 4.51
553 590 3.748568 GTGAAGAAAACTAGAGCTGGGTG 59.251 47.826 0.00 0.00 0.00 4.61
554 591 3.391296 TGAAGAAAACTAGAGCTGGGTGT 59.609 43.478 0.00 0.00 0.00 4.16
555 592 3.686916 AGAAAACTAGAGCTGGGTGTC 57.313 47.619 0.00 0.00 0.00 3.67
556 593 2.028930 AGAAAACTAGAGCTGGGTGTCG 60.029 50.000 0.00 0.00 0.00 4.35
557 594 1.629043 AAACTAGAGCTGGGTGTCGA 58.371 50.000 0.00 0.00 0.00 4.20
558 595 0.889306 AACTAGAGCTGGGTGTCGAC 59.111 55.000 9.11 9.11 0.00 4.20
559 596 0.038455 ACTAGAGCTGGGTGTCGACT 59.962 55.000 17.92 0.00 0.00 4.18
560 597 1.178276 CTAGAGCTGGGTGTCGACTT 58.822 55.000 17.92 0.00 0.00 3.01
561 598 1.133407 CTAGAGCTGGGTGTCGACTTC 59.867 57.143 17.92 9.74 0.00 3.01
562 599 0.540830 AGAGCTGGGTGTCGACTTCT 60.541 55.000 17.92 4.50 0.00 2.85
563 600 0.109039 GAGCTGGGTGTCGACTTCTC 60.109 60.000 17.92 10.42 0.00 2.87
564 601 1.444553 GCTGGGTGTCGACTTCTCG 60.445 63.158 17.92 7.64 41.65 4.04
565 602 1.863662 GCTGGGTGTCGACTTCTCGA 61.864 60.000 17.92 0.00 46.85 4.04
574 611 3.203161 TCGACTTCTCGACAGACAATG 57.797 47.619 0.00 0.00 44.14 2.82
575 612 2.552743 TCGACTTCTCGACAGACAATGT 59.447 45.455 0.00 0.00 44.14 2.71
576 613 3.004419 TCGACTTCTCGACAGACAATGTT 59.996 43.478 0.00 0.00 44.14 2.71
577 614 3.736252 CGACTTCTCGACAGACAATGTTT 59.264 43.478 0.00 0.00 44.17 2.83
578 615 4.915667 CGACTTCTCGACAGACAATGTTTA 59.084 41.667 0.00 0.00 44.17 2.01
579 616 5.059832 CGACTTCTCGACAGACAATGTTTAG 59.940 44.000 0.00 0.00 44.17 1.85
580 617 5.230942 ACTTCTCGACAGACAATGTTTAGG 58.769 41.667 0.00 0.00 44.17 2.69
581 618 3.585862 TCTCGACAGACAATGTTTAGGC 58.414 45.455 0.00 0.00 44.17 3.93
582 619 3.258372 TCTCGACAGACAATGTTTAGGCT 59.742 43.478 0.00 0.00 44.17 4.58
583 620 3.997021 CTCGACAGACAATGTTTAGGCTT 59.003 43.478 0.00 0.00 44.17 4.35
584 621 3.994392 TCGACAGACAATGTTTAGGCTTC 59.006 43.478 0.00 0.00 44.17 3.86
585 622 3.745975 CGACAGACAATGTTTAGGCTTCA 59.254 43.478 0.00 0.00 44.17 3.02
586 623 4.213270 CGACAGACAATGTTTAGGCTTCAA 59.787 41.667 0.00 0.00 44.17 2.69
587 624 5.106555 CGACAGACAATGTTTAGGCTTCAAT 60.107 40.000 0.00 0.00 44.17 2.57
588 625 6.568462 CGACAGACAATGTTTAGGCTTCAATT 60.568 38.462 0.00 0.00 44.17 2.32
589 626 7.054491 ACAGACAATGTTTAGGCTTCAATTT 57.946 32.000 0.00 0.00 39.96 1.82
590 627 7.500141 ACAGACAATGTTTAGGCTTCAATTTT 58.500 30.769 0.00 0.00 39.96 1.82
591 628 7.439056 ACAGACAATGTTTAGGCTTCAATTTTG 59.561 33.333 0.00 0.00 39.96 2.44
592 629 7.652909 CAGACAATGTTTAGGCTTCAATTTTGA 59.347 33.333 0.00 0.00 34.92 2.69
593 630 7.869429 AGACAATGTTTAGGCTTCAATTTTGAG 59.131 33.333 0.00 0.00 38.61 3.02
594 631 7.725251 ACAATGTTTAGGCTTCAATTTTGAGA 58.275 30.769 0.00 0.00 38.61 3.27
595 632 8.203485 ACAATGTTTAGGCTTCAATTTTGAGAA 58.797 29.630 0.00 0.00 38.61 2.87
596 633 8.706035 CAATGTTTAGGCTTCAATTTTGAGAAG 58.294 33.333 0.00 0.00 43.12 2.85
597 634 6.748132 TGTTTAGGCTTCAATTTTGAGAAGG 58.252 36.000 0.00 0.00 41.13 3.46
598 635 6.549364 TGTTTAGGCTTCAATTTTGAGAAGGA 59.451 34.615 0.00 0.00 41.13 3.36
599 636 6.575162 TTAGGCTTCAATTTTGAGAAGGAC 57.425 37.500 0.00 0.00 41.13 3.85
600 637 4.734266 AGGCTTCAATTTTGAGAAGGACT 58.266 39.130 0.00 0.00 41.13 3.85
601 638 4.764308 AGGCTTCAATTTTGAGAAGGACTC 59.236 41.667 0.00 0.00 45.11 3.36
661 698 0.238817 GCGATCGCCGAGAGTATCTT 59.761 55.000 29.48 0.00 40.29 2.40
676 713 4.688021 AGTATCTTCCTTCTTGTGATCGC 58.312 43.478 0.00 0.00 0.00 4.58
687 724 0.753479 TGTGATCGCTCTCCCCTCTC 60.753 60.000 7.94 0.00 0.00 3.20
690 727 2.366153 GATCGCTCTCCCCTCTCCCT 62.366 65.000 0.00 0.00 0.00 4.20
691 728 2.366153 ATCGCTCTCCCCTCTCCCTC 62.366 65.000 0.00 0.00 0.00 4.30
695 732 4.179599 CTCCCCTCTCCCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
764 805 2.391130 TTGGTGGACAAGGGCTGGT 61.391 57.895 0.00 0.00 33.18 4.00
765 806 1.943730 TTGGTGGACAAGGGCTGGTT 61.944 55.000 0.00 0.00 33.18 3.67
768 809 2.081787 TGGACAAGGGCTGGTTGGA 61.082 57.895 0.00 0.00 0.00 3.53
789 830 1.301244 CAGCGGGCGCAAGATCTAT 60.301 57.895 10.83 0.00 44.88 1.98
815 856 0.534203 GCGGTGGAAGGAAGTGACAA 60.534 55.000 0.00 0.00 0.00 3.18
821 862 2.716424 TGGAAGGAAGTGACAAAGGGAT 59.284 45.455 0.00 0.00 0.00 3.85
825 866 1.616994 GGAAGTGACAAAGGGATGGGG 60.617 57.143 0.00 0.00 0.00 4.96
829 870 0.039618 TGACAAAGGGATGGGGAAGC 59.960 55.000 0.00 0.00 0.00 3.86
840 881 2.496899 TGGGGAAGCAAGATGAAGAC 57.503 50.000 0.00 0.00 0.00 3.01
849 890 2.254459 CAAGATGAAGACGTGGACGAG 58.746 52.381 6.12 0.00 43.02 4.18
858 899 2.375766 CGTGGACGAGCTGCTCAAC 61.376 63.158 27.46 19.40 43.02 3.18
859 900 2.029844 GTGGACGAGCTGCTCAACC 61.030 63.158 27.46 26.14 0.00 3.77
864 905 1.241990 ACGAGCTGCTCAACCGACTA 61.242 55.000 27.46 0.00 0.00 2.59
894 935 4.868172 TGAAGATGATGGGGATGACTTT 57.132 40.909 0.00 0.00 0.00 2.66
972 1013 3.502051 AGGGTTCATACCAGTAAGGGA 57.498 47.619 0.00 0.00 46.96 4.20
1006 1047 1.086696 CCTTTATGCGGATATGCGGG 58.913 55.000 18.67 5.88 37.81 6.13
1047 1088 1.398390 GTTGTGCGTTGGAGGATGATC 59.602 52.381 0.00 0.00 0.00 2.92
1049 1090 1.143838 TGCGTTGGAGGATGATCGG 59.856 57.895 0.00 0.00 0.00 4.18
1066 1107 6.582677 TGATCGGGAACAATTTGTTTACAT 57.417 33.333 15.54 6.47 41.28 2.29
1095 1136 1.373570 GTTGCCTCGGAGATTGGAAG 58.626 55.000 6.58 0.00 33.89 3.46
1113 1154 0.249489 AGACGGCGATGACTAATGGC 60.249 55.000 16.62 0.00 39.16 4.40
1129 1170 4.445699 GCCCGTGGCTATTCAGAG 57.554 61.111 7.58 0.00 46.69 3.35
1158 1199 3.738281 CGGTGATTCTGGTGGAGTATGAC 60.738 52.174 0.00 0.00 0.00 3.06
1209 1250 2.391724 ATAGGGTTGCGGTATGGGCG 62.392 60.000 0.00 0.00 0.00 6.13
1237 1278 7.972832 ATTTTGAAACTGTCGGACAACTATA 57.027 32.000 12.54 0.00 0.00 1.31
1240 1281 6.032956 TGAAACTGTCGGACAACTATATGT 57.967 37.500 12.54 1.80 35.90 2.29
1247 1288 5.831525 TGTCGGACAACTATATGTATGAGGT 59.168 40.000 8.68 0.00 32.57 3.85
1260 1301 8.924511 ATATGTATGAGGTTGTGATAAAAGGG 57.075 34.615 0.00 0.00 0.00 3.95
1311 1352 1.602377 GTGCAGATACAATTACCGGCC 59.398 52.381 0.00 0.00 0.00 6.13
1335 1376 4.453136 GGTTACATCGGCAAGTTTGTAAGA 59.547 41.667 0.00 0.00 35.78 2.10
1422 1463 7.147915 GGCAAGAAATATTGGTATCAAGTCCAA 60.148 37.037 0.00 0.00 45.82 3.53
1452 1493 1.255882 TGCCGATCTTTTGCAACCAT 58.744 45.000 0.00 0.00 30.85 3.55
1465 1506 3.163467 TGCAACCATTGTGGATTGATCA 58.837 40.909 2.45 0.00 40.96 2.92
1467 1508 3.444742 GCAACCATTGTGGATTGATCAGA 59.555 43.478 2.45 0.00 40.96 3.27
1482 1523 3.137728 TGATCAGACATTGGCATGAGGAT 59.862 43.478 0.00 0.00 34.11 3.24
1506 1547 2.909662 TGGGACTGGTGAACATGACATA 59.090 45.455 0.00 0.00 0.00 2.29
1561 1602 0.109532 TGAATGGAAGCAACGTGGGA 59.890 50.000 0.00 0.00 0.00 4.37
1562 1603 1.243902 GAATGGAAGCAACGTGGGAA 58.756 50.000 0.00 0.00 0.00 3.97
1566 1607 0.893727 GGAAGCAACGTGGGAATGGT 60.894 55.000 0.00 0.00 0.00 3.55
1569 1610 1.964373 GCAACGTGGGAATGGTCGT 60.964 57.895 0.00 0.00 38.15 4.34
1575 1616 2.033448 GGGAATGGTCGTGGTGCA 59.967 61.111 0.00 0.00 0.00 4.57
1587 1628 2.747855 GGTGCAAGCGGAGGAAGG 60.748 66.667 0.00 0.00 0.00 3.46
1625 1666 1.227497 CTCCCTTCGGCAGAGCATC 60.227 63.158 0.00 0.00 0.00 3.91
1644 1685 7.388460 AGCATCTGAAGGTAGAAATGAAAAG 57.612 36.000 0.00 0.00 0.00 2.27
1657 1698 7.966339 AGAAATGAAAAGGATCATGAATGGA 57.034 32.000 0.00 0.00 39.90 3.41
1658 1699 8.548880 AGAAATGAAAAGGATCATGAATGGAT 57.451 30.769 0.00 0.00 39.90 3.41
1661 1702 5.205821 TGAAAAGGATCATGAATGGATGCT 58.794 37.500 0.00 0.00 44.06 3.79
1665 1706 3.911260 AGGATCATGAATGGATGCTCTCT 59.089 43.478 0.00 0.00 38.87 3.10
1677 1718 3.887716 GGATGCTCTCTAATGGTGCAAAT 59.112 43.478 0.00 0.00 37.20 2.32
1683 1724 5.220931 GCTCTCTAATGGTGCAAATACAAGG 60.221 44.000 0.00 0.00 0.00 3.61
1701 1742 4.018415 ACAAGGTATGATGGCCAAACTAGT 60.018 41.667 10.96 0.00 0.00 2.57
1718 1759 7.378181 CAAACTAGTTGGAGGTTTAATGCAAT 58.622 34.615 9.34 0.00 32.80 3.56
1719 1760 7.539034 AACTAGTTGGAGGTTTAATGCAATT 57.461 32.000 7.48 0.00 41.28 2.32
1722 1763 8.088365 ACTAGTTGGAGGTTTAATGCAATTTTC 58.912 33.333 0.00 0.00 37.87 2.29
1723 1764 6.230472 AGTTGGAGGTTTAATGCAATTTTCC 58.770 36.000 0.00 0.00 37.87 3.13
1724 1765 5.815233 TGGAGGTTTAATGCAATTTTCCA 57.185 34.783 0.00 0.00 37.87 3.53
1733 1774 3.173953 TGCAATTTTCCAGGATCAGGT 57.826 42.857 0.00 0.00 0.00 4.00
1758 1799 2.239400 CCTACAGATCAGCATCCGGTA 58.761 52.381 0.00 0.00 0.00 4.02
1771 1812 1.380785 CCGGTACAGCAGGACCCTA 60.381 63.158 4.66 0.00 34.10 3.53
1772 1813 0.974010 CCGGTACAGCAGGACCCTAA 60.974 60.000 4.66 0.00 34.10 2.69
1773 1814 0.460311 CGGTACAGCAGGACCCTAAG 59.540 60.000 4.66 0.00 31.50 2.18
1782 1823 0.044855 AGGACCCTAAGGCATCAGGT 59.955 55.000 0.00 0.00 36.11 4.00
1799 1840 3.483954 GTCTGGATGTGACCATGGG 57.516 57.895 18.09 0.00 39.34 4.00
1803 1844 0.327924 TGGATGTGACCATGGGTGAC 59.672 55.000 18.09 9.79 40.17 3.67
1809 1850 2.158549 TGTGACCATGGGTGACAATGAA 60.159 45.455 18.09 0.00 45.92 2.57
1812 1853 2.890311 GACCATGGGTGACAATGAACAA 59.110 45.455 18.09 0.00 35.25 2.83
1813 1854 2.892852 ACCATGGGTGACAATGAACAAG 59.107 45.455 18.09 0.00 32.98 3.16
1815 1856 1.993956 TGGGTGACAATGAACAAGGG 58.006 50.000 0.00 0.00 0.00 3.95
1817 1858 0.603065 GGTGACAATGAACAAGGGGC 59.397 55.000 0.00 0.00 0.00 5.80
1818 1859 1.620822 GTGACAATGAACAAGGGGCT 58.379 50.000 0.00 0.00 0.00 5.19
1824 1865 3.181423 ACAATGAACAAGGGGCTAGGAAA 60.181 43.478 0.00 0.00 0.00 3.13
1833 1874 1.313091 GGGCTAGGAAAAGGTTGGCG 61.313 60.000 0.00 0.00 0.00 5.69
1841 1882 0.755327 AAAAGGTTGGCGGCTGACTT 60.755 50.000 11.43 8.60 0.00 3.01
1845 1886 0.887387 GGTTGGCGGCTGACTTTGTA 60.887 55.000 11.43 0.00 0.00 2.41
1887 1928 5.261216 CCCAATAAGTCTATGGTTGTGGTT 58.739 41.667 0.00 0.00 0.00 3.67
1910 1951 3.682696 ACCCGAAATCTAAGGTTTCCAC 58.317 45.455 0.00 0.00 33.15 4.02
1917 1958 7.270047 CGAAATCTAAGGTTTCCACTATGGTA 58.730 38.462 0.00 0.00 39.03 3.25
1919 1960 6.749036 ATCTAAGGTTTCCACTATGGTAGG 57.251 41.667 0.00 0.00 39.03 3.18
1922 1963 3.113043 AGGTTTCCACTATGGTAGGGAC 58.887 50.000 0.00 0.00 39.03 4.46
1926 1967 2.381911 TCCACTATGGTAGGGACGTTC 58.618 52.381 0.00 0.00 39.03 3.95
1931 1972 1.771565 ATGGTAGGGACGTTCGATGA 58.228 50.000 0.00 0.00 0.00 2.92
1932 1973 1.548081 TGGTAGGGACGTTCGATGAA 58.452 50.000 0.00 0.00 0.00 2.57
1943 1984 3.736252 ACGTTCGATGAAAACAGTGAGAG 59.264 43.478 0.00 0.00 0.00 3.20
1950 1991 1.700186 GAAAACAGTGAGAGGGACCCT 59.300 52.381 14.79 14.79 36.03 4.34
1956 1997 0.533032 GTGAGAGGGACCCTTCTTCG 59.467 60.000 16.22 0.00 31.76 3.79
1968 2009 1.338200 CCTTCTTCGACACCCCAGAAG 60.338 57.143 13.13 13.13 41.31 2.85
1970 2011 1.938585 TCTTCGACACCCCAGAAGAT 58.061 50.000 3.35 0.00 43.53 2.40
1978 2019 2.827921 ACACCCCAGAAGATTGCAAATC 59.172 45.455 1.71 2.47 0.00 2.17
1980 2021 1.406539 CCCCAGAAGATTGCAAATCGG 59.593 52.381 1.71 8.32 0.00 4.18
2003 2044 3.545703 AGAAACATAAAGCCGAGGATGG 58.454 45.455 0.00 0.00 0.00 3.51
2004 2045 2.348411 AACATAAAGCCGAGGATGGG 57.652 50.000 0.00 0.00 36.85 4.00
2006 2047 0.764890 CATAAAGCCGAGGATGGGGA 59.235 55.000 0.00 0.00 32.83 4.81
2014 2055 2.370849 GCCGAGGATGGGGAAGTAAATA 59.629 50.000 0.00 0.00 32.83 1.40
2015 2056 3.009143 GCCGAGGATGGGGAAGTAAATAT 59.991 47.826 0.00 0.00 32.83 1.28
2017 2058 5.104485 GCCGAGGATGGGGAAGTAAATATAT 60.104 44.000 0.00 0.00 32.83 0.86
2025 2066 7.699709 TGGGGAAGTAAATATATGTGAGGAA 57.300 36.000 0.00 0.00 0.00 3.36
2029 2070 8.095169 GGGAAGTAAATATATGTGAGGAATCGT 58.905 37.037 0.00 0.00 0.00 3.73
2030 2071 9.141400 GGAAGTAAATATATGTGAGGAATCGTC 57.859 37.037 0.00 0.00 0.00 4.20
2053 2094 1.065491 AGTACAATGCAGGATCGGCAA 60.065 47.619 13.72 0.00 45.60 4.52
2059 2100 2.109126 GCAGGATCGGCAACACTCC 61.109 63.158 3.36 0.00 0.00 3.85
2063 2104 1.511305 GATCGGCAACACTCCTCGA 59.489 57.895 0.00 0.00 0.00 4.04
2090 2131 2.550487 GCCGGGCGCAATGAATATA 58.450 52.632 10.83 0.00 37.47 0.86
2147 2210 2.359850 GTCAGTTGCATCGCCCCA 60.360 61.111 0.00 0.00 0.00 4.96
2181 2245 2.897326 TCTCGGAGACCAAATTGTCTGA 59.103 45.455 2.97 0.00 45.41 3.27
2191 2255 4.183865 CCAAATTGTCTGATACGAGAGCA 58.816 43.478 0.00 0.00 0.00 4.26
2233 2297 1.344114 GGTTTCAGGCATGCTTTTGGA 59.656 47.619 18.92 5.97 0.00 3.53
2251 2315 4.061131 TGGAGTCAAGAGTGAGGGATTA 57.939 45.455 0.00 0.00 33.27 1.75
2257 2321 0.466124 AGAGTGAGGGATTAAGCGGC 59.534 55.000 0.00 0.00 0.00 6.53
2260 2324 2.061578 TGAGGGATTAAGCGGCGGA 61.062 57.895 9.78 0.00 0.00 5.54
2261 2325 1.145377 GAGGGATTAAGCGGCGGAA 59.855 57.895 9.78 0.00 0.00 4.30
2276 2340 2.104281 GGCGGAATGGTACTATTCTGGT 59.896 50.000 30.72 1.89 41.58 4.00
2305 2369 4.715534 TTCAGTGGTCACCCTAAAATCA 57.284 40.909 0.00 0.00 0.00 2.57
2308 2372 5.741011 TCAGTGGTCACCCTAAAATCATAC 58.259 41.667 0.00 0.00 0.00 2.39
2313 2377 4.947388 GGTCACCCTAAAATCATACAGCAA 59.053 41.667 0.00 0.00 0.00 3.91
2355 2419 3.266510 TCAGAATGATGCCACAGGTAC 57.733 47.619 0.00 0.00 42.56 3.34
2368 2432 1.076192 AGGTACTAGGGAGTGGCGG 60.076 63.158 0.00 0.00 36.02 6.13
2377 2441 2.426023 GAGTGGCGGTTCACAGGT 59.574 61.111 0.00 0.00 39.93 4.00
2389 2453 3.610911 GTTCACAGGTTTCTATGGGGAG 58.389 50.000 0.00 0.00 0.00 4.30
2396 2460 0.764890 TTTCTATGGGGAGCCGATGG 59.235 55.000 0.00 0.00 0.00 3.51
2409 2473 0.683973 CCGATGGGATCAAGGAGGAG 59.316 60.000 0.00 0.00 34.06 3.69
2425 2489 2.444010 GAGGAGGAGGAGCTAGGAACTA 59.556 54.545 0.00 0.00 41.75 2.24
2455 2519 6.758416 CGTTCCTGAGAAATGAGTATGATCAA 59.242 38.462 0.00 0.00 32.58 2.57
2494 2558 5.107824 GGGGATTTCAACGAAGTACTAGAC 58.892 45.833 0.00 0.00 45.00 2.59
2495 2559 5.337009 GGGGATTTCAACGAAGTACTAGACA 60.337 44.000 0.00 0.00 45.00 3.41
2499 2563 8.221766 GGATTTCAACGAAGTACTAGACAAAAG 58.778 37.037 0.00 0.00 45.00 2.27
2508 2572 7.859377 CGAAGTACTAGACAAAAGTGAACAGTA 59.141 37.037 0.00 0.00 0.00 2.74
2521 2585 4.021368 AGTGAACAGTATGGAGGTGTACAC 60.021 45.833 18.01 18.01 43.62 2.90
2604 2668 1.153086 GCTACACAGGGCTCCCATG 60.153 63.158 7.82 7.61 38.92 3.66
2605 2669 1.915078 GCTACACAGGGCTCCCATGT 61.915 60.000 16.11 16.11 39.78 3.21
2650 2714 7.743116 TGGTAACAGGAATATTAAGGTCAGA 57.257 36.000 0.00 0.00 46.17 3.27
2662 2726 0.833287 AGGTCAGATTGGATCGTGGG 59.167 55.000 0.00 0.00 0.00 4.61
2668 2732 1.379843 ATTGGATCGTGGGTTGGGC 60.380 57.895 0.00 0.00 0.00 5.36
2704 2768 9.465199 TTCATGGAGATGTTTGATAATTCTTCA 57.535 29.630 0.00 0.00 0.00 3.02
2710 2774 9.160496 GAGATGTTTGATAATTCTTCAGTCACT 57.840 33.333 0.00 0.00 0.00 3.41
2725 2789 3.256879 CAGTCACTCATGTACAGACCACT 59.743 47.826 0.33 0.00 0.00 4.00
2726 2790 4.459337 CAGTCACTCATGTACAGACCACTA 59.541 45.833 0.33 0.00 0.00 2.74
2753 2817 3.173599 GACCATTGTGCGTTGATGATTG 58.826 45.455 0.00 0.00 0.00 2.67
2772 2836 7.418337 TGATTGGTATTAGCAAGTCAGACTA 57.582 36.000 13.22 0.00 39.11 2.59
2776 2840 2.941453 TTAGCAAGTCAGACTAGGCG 57.059 50.000 17.17 3.92 34.88 5.52
2779 2843 1.355066 GCAAGTCAGACTAGGCGCAC 61.355 60.000 10.83 0.00 0.00 5.34
2797 2861 3.430790 CGCACACTGATGGAGGAAATAGA 60.431 47.826 0.00 0.00 0.00 1.98
2798 2862 4.712476 GCACACTGATGGAGGAAATAGAT 58.288 43.478 0.00 0.00 0.00 1.98
2809 2873 6.516718 TGGAGGAAATAGATCGTTCAGATTC 58.483 40.000 8.48 0.00 40.26 2.52
2830 2894 2.012673 GAGAATGCATGGACCAGACAC 58.987 52.381 0.00 0.00 0.00 3.67
2833 2897 2.436646 GCATGGACCAGACACGGG 60.437 66.667 0.00 0.00 0.00 5.28
2842 2906 3.387050 GGACCAGACACGGGAATTATACT 59.613 47.826 0.00 0.00 0.00 2.12
2848 2912 6.106673 CAGACACGGGAATTATACTCAAACT 58.893 40.000 0.00 0.00 0.00 2.66
2849 2913 7.262772 CAGACACGGGAATTATACTCAAACTA 58.737 38.462 0.00 0.00 0.00 2.24
2857 2921 9.847224 GGGAATTATACTCAAACTATGGAAGAA 57.153 33.333 0.00 0.00 0.00 2.52
2869 2933 2.440599 GAAGAAGCTTGGGCCCCA 59.559 61.111 22.27 7.58 39.73 4.96
2874 2938 3.444818 AAGCTTGGGCCCCAACGAA 62.445 57.895 22.27 5.12 38.75 3.85
2903 2967 0.727122 GCAACAAGTGACAGATGCGC 60.727 55.000 0.00 0.00 0.00 6.09
2931 2995 6.773685 GGAGTAGTGAGAGATAGGCTAAGAAA 59.226 42.308 0.00 0.00 0.00 2.52
2998 3063 1.067199 GCGTCAAAGGCTTGAATGCG 61.067 55.000 0.00 5.33 43.18 4.73
3000 3065 1.463056 CGTCAAAGGCTTGAATGCGTA 59.537 47.619 0.00 0.00 43.18 4.42
3045 3110 1.433534 CGACAGTGGAGGAAAGAAGC 58.566 55.000 0.00 0.00 0.00 3.86
3051 3116 2.835156 AGTGGAGGAAAGAAGCCTAGTC 59.165 50.000 0.00 0.00 35.44 2.59
3060 3125 5.351948 AAAGAAGCCTAGTCAGGAGAATC 57.648 43.478 0.00 0.00 45.91 2.52
3072 3137 3.446873 TCAGGAGAATCTCTGAACTGCTC 59.553 47.826 10.38 0.00 38.74 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.129555 TTGAGGAAGGCAGTCCAGGC 62.130 60.000 9.61 0.00 40.48 4.85
97 98 0.551396 TGCGGGTCTCTGATCTCCTA 59.449 55.000 0.00 0.00 0.00 2.94
106 107 1.557099 TGATACACTTGCGGGTCTCT 58.443 50.000 0.00 0.00 0.00 3.10
114 115 3.365364 GCTCCAGTTGTTGATACACTTGC 60.365 47.826 0.00 0.00 32.98 4.01
117 118 3.324846 TCTGCTCCAGTTGTTGATACACT 59.675 43.478 0.00 0.00 32.98 3.55
121 122 5.181009 CAGATTCTGCTCCAGTTGTTGATA 58.819 41.667 0.00 0.00 32.61 2.15
133 134 0.251354 TGCTCCACCAGATTCTGCTC 59.749 55.000 8.23 0.00 0.00 4.26
309 312 7.582319 GGCGTGAATTCAACAAAAGTAATTTTG 59.418 33.333 22.93 22.93 44.93 2.44
313 316 4.915085 CGGCGTGAATTCAACAAAAGTAAT 59.085 37.500 10.35 0.00 0.00 1.89
314 317 4.035324 TCGGCGTGAATTCAACAAAAGTAA 59.965 37.500 10.35 0.00 0.00 2.24
315 318 3.560481 TCGGCGTGAATTCAACAAAAGTA 59.440 39.130 10.35 0.00 0.00 2.24
342 348 2.676750 GCATATCGGACCATATTCGCCA 60.677 50.000 0.00 0.00 0.00 5.69
354 360 1.065551 CTGATATCGGCGCATATCGGA 59.934 52.381 26.50 14.78 41.80 4.55
360 366 0.610174 ATGACCTGATATCGGCGCAT 59.390 50.000 10.83 8.47 0.00 4.73
373 379 3.494223 CCCTTTTTGGCGAAAAATGACCT 60.494 43.478 18.02 0.00 39.70 3.85
379 385 0.179043 GCCCCCTTTTTGGCGAAAAA 60.179 50.000 16.96 16.96 38.47 1.94
388 406 3.414486 CGATATCGGCCCCCTTTTT 57.586 52.632 17.51 0.00 35.37 1.94
411 429 4.047125 CCCAGTTGTCGCCCCCAT 62.047 66.667 0.00 0.00 0.00 4.00
422 451 1.304134 GGCGATTGGGTTCCCAGTT 60.304 57.895 10.62 3.16 37.42 3.16
441 470 1.006832 GCGCTAAAATCGGCTCTGAA 58.993 50.000 0.00 0.00 0.00 3.02
523 560 5.001237 TCTAGTTTTCTTCACGACACACA 57.999 39.130 0.00 0.00 0.00 3.72
524 561 4.085004 GCTCTAGTTTTCTTCACGACACAC 60.085 45.833 0.00 0.00 0.00 3.82
525 562 4.049186 GCTCTAGTTTTCTTCACGACACA 58.951 43.478 0.00 0.00 0.00 3.72
526 563 4.149046 CAGCTCTAGTTTTCTTCACGACAC 59.851 45.833 0.00 0.00 0.00 3.67
527 564 4.299155 CAGCTCTAGTTTTCTTCACGACA 58.701 43.478 0.00 0.00 0.00 4.35
528 565 3.675698 CCAGCTCTAGTTTTCTTCACGAC 59.324 47.826 0.00 0.00 0.00 4.34
529 566 3.306088 CCCAGCTCTAGTTTTCTTCACGA 60.306 47.826 0.00 0.00 0.00 4.35
530 567 2.996621 CCCAGCTCTAGTTTTCTTCACG 59.003 50.000 0.00 0.00 0.00 4.35
531 568 3.748568 CACCCAGCTCTAGTTTTCTTCAC 59.251 47.826 0.00 0.00 0.00 3.18
532 569 3.391296 ACACCCAGCTCTAGTTTTCTTCA 59.609 43.478 0.00 0.00 0.00 3.02
533 570 3.997681 GACACCCAGCTCTAGTTTTCTTC 59.002 47.826 0.00 0.00 0.00 2.87
534 571 3.555168 CGACACCCAGCTCTAGTTTTCTT 60.555 47.826 0.00 0.00 0.00 2.52
535 572 2.028930 CGACACCCAGCTCTAGTTTTCT 60.029 50.000 0.00 0.00 0.00 2.52
536 573 2.029290 TCGACACCCAGCTCTAGTTTTC 60.029 50.000 0.00 0.00 0.00 2.29
537 574 1.968493 TCGACACCCAGCTCTAGTTTT 59.032 47.619 0.00 0.00 0.00 2.43
538 575 1.272769 GTCGACACCCAGCTCTAGTTT 59.727 52.381 11.55 0.00 0.00 2.66
539 576 0.889306 GTCGACACCCAGCTCTAGTT 59.111 55.000 11.55 0.00 0.00 2.24
540 577 0.038455 AGTCGACACCCAGCTCTAGT 59.962 55.000 19.50 0.00 0.00 2.57
541 578 1.133407 GAAGTCGACACCCAGCTCTAG 59.867 57.143 19.50 0.00 0.00 2.43
542 579 1.174783 GAAGTCGACACCCAGCTCTA 58.825 55.000 19.50 0.00 0.00 2.43
543 580 0.540830 AGAAGTCGACACCCAGCTCT 60.541 55.000 19.50 4.71 0.00 4.09
544 581 0.109039 GAGAAGTCGACACCCAGCTC 60.109 60.000 19.50 10.35 0.00 4.09
545 582 1.968310 GAGAAGTCGACACCCAGCT 59.032 57.895 19.50 5.01 0.00 4.24
546 583 4.580835 GAGAAGTCGACACCCAGC 57.419 61.111 19.50 0.00 0.00 4.85
556 593 5.346281 CCTAAACATTGTCTGTCGAGAAGTC 59.654 44.000 0.00 0.00 36.98 3.01
557 594 5.230942 CCTAAACATTGTCTGTCGAGAAGT 58.769 41.667 0.00 0.00 36.98 3.01
558 595 4.092091 GCCTAAACATTGTCTGTCGAGAAG 59.908 45.833 0.00 0.00 36.98 2.85
559 596 3.994392 GCCTAAACATTGTCTGTCGAGAA 59.006 43.478 0.00 0.00 36.98 2.87
560 597 3.258372 AGCCTAAACATTGTCTGTCGAGA 59.742 43.478 0.00 0.00 36.98 4.04
561 598 3.589988 AGCCTAAACATTGTCTGTCGAG 58.410 45.455 0.00 0.00 36.98 4.04
562 599 3.678056 AGCCTAAACATTGTCTGTCGA 57.322 42.857 0.00 0.00 36.98 4.20
563 600 3.745975 TGAAGCCTAAACATTGTCTGTCG 59.254 43.478 0.00 0.00 36.98 4.35
564 601 5.689383 TTGAAGCCTAAACATTGTCTGTC 57.311 39.130 0.00 0.00 36.98 3.51
565 602 6.655078 AATTGAAGCCTAAACATTGTCTGT 57.345 33.333 0.00 0.00 40.84 3.41
566 603 7.652909 TCAAAATTGAAGCCTAAACATTGTCTG 59.347 33.333 0.00 0.00 33.55 3.51
567 604 7.725251 TCAAAATTGAAGCCTAAACATTGTCT 58.275 30.769 0.00 0.00 33.55 3.41
568 605 7.867403 TCTCAAAATTGAAGCCTAAACATTGTC 59.133 33.333 0.00 0.00 36.64 3.18
569 606 7.725251 TCTCAAAATTGAAGCCTAAACATTGT 58.275 30.769 0.00 0.00 36.64 2.71
570 607 8.592105 TTCTCAAAATTGAAGCCTAAACATTG 57.408 30.769 0.00 0.00 36.64 2.82
571 608 7.874528 CCTTCTCAAAATTGAAGCCTAAACATT 59.125 33.333 0.00 0.00 38.55 2.71
572 609 7.233348 TCCTTCTCAAAATTGAAGCCTAAACAT 59.767 33.333 0.00 0.00 38.55 2.71
573 610 6.549364 TCCTTCTCAAAATTGAAGCCTAAACA 59.451 34.615 0.00 0.00 38.55 2.83
574 611 6.863645 GTCCTTCTCAAAATTGAAGCCTAAAC 59.136 38.462 0.00 0.00 38.55 2.01
575 612 6.777580 AGTCCTTCTCAAAATTGAAGCCTAAA 59.222 34.615 0.00 0.00 38.55 1.85
576 613 6.306987 AGTCCTTCTCAAAATTGAAGCCTAA 58.693 36.000 0.00 0.00 38.55 2.69
577 614 5.880901 AGTCCTTCTCAAAATTGAAGCCTA 58.119 37.500 0.00 0.00 38.55 3.93
578 615 4.734266 AGTCCTTCTCAAAATTGAAGCCT 58.266 39.130 0.00 0.00 38.55 4.58
579 616 4.082517 GGAGTCCTTCTCAAAATTGAAGCC 60.083 45.833 0.41 0.00 44.40 4.35
580 617 4.082517 GGGAGTCCTTCTCAAAATTGAAGC 60.083 45.833 9.58 0.00 44.40 3.86
581 618 4.460731 GGGGAGTCCTTCTCAAAATTGAAG 59.539 45.833 9.58 0.00 44.40 3.02
582 619 4.106341 AGGGGAGTCCTTCTCAAAATTGAA 59.894 41.667 9.58 0.00 45.47 2.69
583 620 3.657727 AGGGGAGTCCTTCTCAAAATTGA 59.342 43.478 9.58 0.00 45.47 2.57
584 621 4.039603 AGGGGAGTCCTTCTCAAAATTG 57.960 45.455 9.58 0.00 45.47 2.32
585 622 4.324641 GCTAGGGGAGTCCTTCTCAAAATT 60.325 45.833 9.58 0.00 45.47 1.82
586 623 3.201045 GCTAGGGGAGTCCTTCTCAAAAT 59.799 47.826 9.58 0.00 45.47 1.82
587 624 2.572104 GCTAGGGGAGTCCTTCTCAAAA 59.428 50.000 9.58 0.00 45.47 2.44
588 625 2.188817 GCTAGGGGAGTCCTTCTCAAA 58.811 52.381 9.58 0.00 45.47 2.69
589 626 1.078823 TGCTAGGGGAGTCCTTCTCAA 59.921 52.381 9.58 0.00 45.47 3.02
590 627 0.710588 TGCTAGGGGAGTCCTTCTCA 59.289 55.000 9.58 0.43 45.47 3.27
591 628 1.867363 TTGCTAGGGGAGTCCTTCTC 58.133 55.000 9.58 0.00 45.47 2.87
592 629 2.344093 TTTGCTAGGGGAGTCCTTCT 57.656 50.000 9.58 9.71 45.47 2.85
593 630 3.434940 TTTTTGCTAGGGGAGTCCTTC 57.565 47.619 9.58 1.94 45.47 3.46
643 680 1.135916 GGAAGATACTCTCGGCGATCG 60.136 57.143 11.27 11.69 40.90 3.69
661 698 1.478510 GGAGAGCGATCACAAGAAGGA 59.521 52.381 2.38 0.00 0.00 3.36
669 706 1.460273 GGAGAGGGGAGAGCGATCAC 61.460 65.000 2.38 0.00 0.00 3.06
676 713 2.612251 GGGAGGGAGAGGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
695 732 1.403814 TCAGCCTGAGTATTCGAGGG 58.596 55.000 0.00 0.00 0.00 4.30
697 734 2.625314 TGGATCAGCCTGAGTATTCGAG 59.375 50.000 0.00 0.00 37.63 4.04
698 735 2.625314 CTGGATCAGCCTGAGTATTCGA 59.375 50.000 0.00 0.00 37.79 3.71
700 737 2.038295 CCCTGGATCAGCCTGAGTATTC 59.962 54.545 0.00 0.00 37.79 1.75
701 738 2.053244 CCCTGGATCAGCCTGAGTATT 58.947 52.381 0.00 0.00 37.79 1.89
702 739 1.727062 CCCTGGATCAGCCTGAGTAT 58.273 55.000 0.00 0.00 37.79 2.12
703 740 0.399091 CCCCTGGATCAGCCTGAGTA 60.399 60.000 0.00 0.00 37.79 2.59
705 742 2.450320 CCCCCTGGATCAGCCTGAG 61.450 68.421 0.00 0.00 37.79 3.35
727 768 1.222661 GGCCGGGAAGGAACGTAAT 59.777 57.895 2.18 0.00 45.00 1.89
730 771 3.246880 AAGGCCGGGAAGGAACGT 61.247 61.111 2.18 0.00 45.00 3.99
774 815 0.249447 TGTCATAGATCTTGCGCCCG 60.249 55.000 4.18 0.00 0.00 6.13
778 819 1.458445 CGCCATGTCATAGATCTTGCG 59.542 52.381 0.00 0.00 0.00 4.85
779 820 1.802960 CCGCCATGTCATAGATCTTGC 59.197 52.381 0.00 0.00 0.00 4.01
781 822 2.224378 CCACCGCCATGTCATAGATCTT 60.224 50.000 0.00 0.00 0.00 2.40
789 830 1.773856 TTCCTTCCACCGCCATGTCA 61.774 55.000 0.00 0.00 0.00 3.58
815 856 1.063417 CATCTTGCTTCCCCATCCCTT 60.063 52.381 0.00 0.00 0.00 3.95
821 862 1.339055 CGTCTTCATCTTGCTTCCCCA 60.339 52.381 0.00 0.00 0.00 4.96
825 866 2.413453 GTCCACGTCTTCATCTTGCTTC 59.587 50.000 0.00 0.00 0.00 3.86
829 870 2.254459 CTCGTCCACGTCTTCATCTTG 58.746 52.381 0.00 0.00 40.80 3.02
840 881 2.049156 TTGAGCAGCTCGTCCACG 60.049 61.111 17.81 0.00 41.45 4.94
849 890 1.407258 AGATCTAGTCGGTTGAGCAGC 59.593 52.381 0.00 0.00 0.00 5.25
858 899 3.998099 TCTTCATGCAGATCTAGTCGG 57.002 47.619 0.00 0.00 0.00 4.79
859 900 5.118642 TCATCTTCATGCAGATCTAGTCG 57.881 43.478 4.75 0.00 30.50 4.18
864 905 3.244946 CCCCATCATCTTCATGCAGATCT 60.245 47.826 4.75 0.00 30.50 2.75
894 935 1.206878 CCAGATCATCCTCCCACACA 58.793 55.000 0.00 0.00 0.00 3.72
972 1013 4.398319 CATAAAGGGTCGATGGGCTAAAT 58.602 43.478 0.00 0.00 0.00 1.40
985 1026 1.610624 CCGCATATCCGCATAAAGGGT 60.611 52.381 0.00 0.00 0.00 4.34
1006 1047 1.947597 TTTGCCGGATTCCATGCAGC 61.948 55.000 5.05 4.84 33.56 5.25
1011 1052 2.029110 CACAACTTTTGCCGGATTCCAT 60.029 45.455 5.05 0.00 0.00 3.41
1047 1088 4.747108 TGCAATGTAAACAAATTGTTCCCG 59.253 37.500 12.11 0.00 40.14 5.14
1049 1090 6.843069 ACTGCAATGTAAACAAATTGTTCC 57.157 33.333 12.11 6.67 40.14 3.62
1066 1107 1.732917 CGAGGCAACCAAACTGCAA 59.267 52.632 0.00 0.00 41.78 4.08
1095 1136 1.222115 GGCCATTAGTCATCGCCGTC 61.222 60.000 0.00 0.00 0.00 4.79
1113 1154 1.688735 TGATCTCTGAATAGCCACGGG 59.311 52.381 0.00 0.00 0.00 5.28
1129 1170 1.667724 CACCAGAATCACCGCTTGATC 59.332 52.381 0.00 0.00 44.86 2.92
1143 1184 2.454336 ATCCGTCATACTCCACCAGA 57.546 50.000 0.00 0.00 0.00 3.86
1144 1185 2.430694 TGAATCCGTCATACTCCACCAG 59.569 50.000 0.00 0.00 0.00 4.00
1158 1199 3.527533 TGATTTAGGGTTCGTGAATCCG 58.472 45.455 6.26 0.00 46.14 4.18
1209 1250 5.418310 TGTCCGACAGTTTCAAAATTCTC 57.582 39.130 0.00 0.00 0.00 2.87
1237 1278 6.969043 TCCCTTTTATCACAACCTCATACAT 58.031 36.000 0.00 0.00 0.00 2.29
1240 1281 6.828273 CACATCCCTTTTATCACAACCTCATA 59.172 38.462 0.00 0.00 0.00 2.15
1247 1288 3.763360 CCTGCACATCCCTTTTATCACAA 59.237 43.478 0.00 0.00 0.00 3.33
1260 1301 2.102252 CTCTCCTACCTTCCTGCACATC 59.898 54.545 0.00 0.00 0.00 3.06
1311 1352 1.533731 ACAAACTTGCCGATGTAACCG 59.466 47.619 0.00 0.00 0.00 4.44
1318 1359 6.433093 ACCTTTATTCTTACAAACTTGCCGAT 59.567 34.615 0.00 0.00 0.00 4.18
1422 1463 4.592485 AAAGATCGGCATCTTCTCGTAT 57.408 40.909 11.01 0.00 46.96 3.06
1425 1466 2.286067 GCAAAAGATCGGCATCTTCTCG 60.286 50.000 11.01 5.96 46.96 4.04
1452 1493 3.444742 GCCAATGTCTGATCAATCCACAA 59.555 43.478 0.00 0.00 0.00 3.33
1465 1506 3.021695 CACAATCCTCATGCCAATGTCT 58.978 45.455 0.00 0.00 35.15 3.41
1467 1508 2.104967 CCACAATCCTCATGCCAATGT 58.895 47.619 0.00 0.00 35.15 2.71
1482 1523 1.492599 TCATGTTCACCAGTCCCACAA 59.507 47.619 0.00 0.00 0.00 3.33
1506 1547 2.348472 TCTCCCCACTCAAACTTGGAT 58.652 47.619 0.00 0.00 34.46 3.41
1561 1602 2.616330 CGCTTGCACCACGACCATT 61.616 57.895 0.00 0.00 0.00 3.16
1562 1603 3.049674 CGCTTGCACCACGACCAT 61.050 61.111 0.00 0.00 0.00 3.55
1566 1607 4.680237 CCTCCGCTTGCACCACGA 62.680 66.667 3.92 0.00 0.00 4.35
1569 1610 2.032528 CTTCCTCCGCTTGCACCA 59.967 61.111 0.00 0.00 0.00 4.17
1575 1616 3.391382 CGACCCCTTCCTCCGCTT 61.391 66.667 0.00 0.00 0.00 4.68
1611 1652 1.288350 CTTCAGATGCTCTGCCGAAG 58.712 55.000 7.94 4.41 43.95 3.79
1622 1663 7.928307 TCCTTTTCATTTCTACCTTCAGATG 57.072 36.000 0.00 0.00 0.00 2.90
1623 1664 8.331740 TGATCCTTTTCATTTCTACCTTCAGAT 58.668 33.333 0.00 0.00 0.00 2.90
1625 1666 7.928307 TGATCCTTTTCATTTCTACCTTCAG 57.072 36.000 0.00 0.00 0.00 3.02
1628 1669 8.884124 TTCATGATCCTTTTCATTTCTACCTT 57.116 30.769 0.00 0.00 34.09 3.50
1636 1677 6.326583 AGCATCCATTCATGATCCTTTTCATT 59.673 34.615 0.00 0.00 34.09 2.57
1640 1681 5.455872 AGAGCATCCATTCATGATCCTTTT 58.544 37.500 0.00 0.00 39.58 2.27
1644 1685 4.289238 AGAGAGCATCCATTCATGATCC 57.711 45.455 0.00 0.00 39.58 3.36
1657 1698 5.439721 TGTATTTGCACCATTAGAGAGCAT 58.560 37.500 0.00 0.00 34.87 3.79
1658 1699 4.842574 TGTATTTGCACCATTAGAGAGCA 58.157 39.130 0.00 0.00 0.00 4.26
1661 1702 5.815581 ACCTTGTATTTGCACCATTAGAGA 58.184 37.500 0.00 0.00 0.00 3.10
1665 1706 7.014134 CCATCATACCTTGTATTTGCACCATTA 59.986 37.037 0.00 0.00 0.00 1.90
1677 1718 4.584638 AGTTTGGCCATCATACCTTGTA 57.415 40.909 6.09 0.00 0.00 2.41
1701 1742 6.179906 TGGAAAATTGCATTAAACCTCCAA 57.820 33.333 0.00 0.00 0.00 3.53
1709 1750 5.721000 ACCTGATCCTGGAAAATTGCATTAA 59.279 36.000 0.00 0.00 0.00 1.40
1710 1751 5.127519 CACCTGATCCTGGAAAATTGCATTA 59.872 40.000 0.00 0.00 0.00 1.90
1718 1759 2.225017 GGTTCCACCTGATCCTGGAAAA 60.225 50.000 14.93 0.00 45.99 2.29
1719 1760 1.354368 GGTTCCACCTGATCCTGGAAA 59.646 52.381 14.93 0.00 45.99 3.13
1733 1774 2.435805 GGATGCTGATCTGTAGGTTCCA 59.564 50.000 1.27 0.00 0.00 3.53
1758 1799 0.916358 ATGCCTTAGGGTCCTGCTGT 60.916 55.000 0.00 0.00 34.45 4.40
1771 1812 1.064906 CACATCCAGACCTGATGCCTT 60.065 52.381 0.00 0.00 0.00 4.35
1772 1813 0.545171 CACATCCAGACCTGATGCCT 59.455 55.000 0.00 0.00 0.00 4.75
1773 1814 0.543277 TCACATCCAGACCTGATGCC 59.457 55.000 0.00 0.00 0.00 4.40
1782 1823 0.620030 CACCCATGGTCACATCCAGA 59.380 55.000 11.73 0.00 41.05 3.86
1799 1840 1.620822 AGCCCCTTGTTCATTGTCAC 58.379 50.000 0.00 0.00 0.00 3.67
1803 1844 2.806945 TCCTAGCCCCTTGTTCATTG 57.193 50.000 0.00 0.00 0.00 2.82
1809 1850 1.456919 ACCTTTTCCTAGCCCCTTGT 58.543 50.000 0.00 0.00 0.00 3.16
1812 1853 0.704664 CCAACCTTTTCCTAGCCCCT 59.295 55.000 0.00 0.00 0.00 4.79
1813 1854 0.970937 GCCAACCTTTTCCTAGCCCC 60.971 60.000 0.00 0.00 0.00 5.80
1815 1856 1.313091 CCGCCAACCTTTTCCTAGCC 61.313 60.000 0.00 0.00 0.00 3.93
1817 1858 0.322546 AGCCGCCAACCTTTTCCTAG 60.323 55.000 0.00 0.00 0.00 3.02
1818 1859 0.608035 CAGCCGCCAACCTTTTCCTA 60.608 55.000 0.00 0.00 0.00 2.94
1824 1865 1.152756 AAAGTCAGCCGCCAACCTT 60.153 52.632 0.00 0.00 0.00 3.50
1833 1874 2.420687 CCCTCCTGATACAAAGTCAGCC 60.421 54.545 0.00 0.00 41.33 4.85
1841 1882 3.309296 CTTAGCTCCCCTCCTGATACAA 58.691 50.000 0.00 0.00 0.00 2.41
1845 1886 0.766288 GGCTTAGCTCCCCTCCTGAT 60.766 60.000 3.59 0.00 0.00 2.90
1867 1908 5.944007 GGTCAACCACAACCATAGACTTATT 59.056 40.000 0.00 0.00 35.53 1.40
1870 1911 3.497942 GGGTCAACCACAACCATAGACTT 60.498 47.826 0.89 0.00 39.85 3.01
1887 1928 3.328343 TGGAAACCTTAGATTTCGGGTCA 59.672 43.478 0.00 0.00 37.00 4.02
1910 1951 2.882761 TCATCGAACGTCCCTACCATAG 59.117 50.000 0.00 0.00 0.00 2.23
1917 1958 2.224209 ACTGTTTTCATCGAACGTCCCT 60.224 45.455 0.00 0.00 0.00 4.20
1919 1960 2.798283 TCACTGTTTTCATCGAACGTCC 59.202 45.455 0.00 0.00 0.00 4.79
1922 1963 3.121944 CCTCTCACTGTTTTCATCGAACG 59.878 47.826 0.00 0.00 0.00 3.95
1926 1967 2.996621 GTCCCTCTCACTGTTTTCATCG 59.003 50.000 0.00 0.00 0.00 3.84
1931 1972 1.821088 AGGGTCCCTCTCACTGTTTT 58.179 50.000 3.85 0.00 0.00 2.43
1932 1973 1.700186 GAAGGGTCCCTCTCACTGTTT 59.300 52.381 12.07 0.00 30.89 2.83
1943 1984 1.295746 GGTGTCGAAGAAGGGTCCC 59.704 63.158 0.00 0.00 39.69 4.46
1950 1991 1.712056 TCTTCTGGGGTGTCGAAGAA 58.288 50.000 0.00 0.00 39.91 2.52
1956 1997 1.909700 TTGCAATCTTCTGGGGTGTC 58.090 50.000 0.00 0.00 0.00 3.67
1968 2009 7.463251 GCTTTATGTTTCTTCCGATTTGCAATC 60.463 37.037 0.00 0.00 0.00 2.67
1970 2011 5.633182 GCTTTATGTTTCTTCCGATTTGCAA 59.367 36.000 0.00 0.00 0.00 4.08
1978 2019 2.351726 CCTCGGCTTTATGTTTCTTCCG 59.648 50.000 0.00 0.00 37.00 4.30
1980 2021 4.035675 CCATCCTCGGCTTTATGTTTCTTC 59.964 45.833 0.00 0.00 0.00 2.87
1994 2035 4.910458 ATATTTACTTCCCCATCCTCGG 57.090 45.455 0.00 0.00 0.00 4.63
1995 2036 6.818644 CACATATATTTACTTCCCCATCCTCG 59.181 42.308 0.00 0.00 0.00 4.63
2003 2044 8.095169 ACGATTCCTCACATATATTTACTTCCC 58.905 37.037 0.00 0.00 0.00 3.97
2004 2045 9.141400 GACGATTCCTCACATATATTTACTTCC 57.859 37.037 0.00 0.00 0.00 3.46
2014 2055 7.818997 TGTACTTAGACGATTCCTCACATAT 57.181 36.000 0.00 0.00 0.00 1.78
2015 2056 7.634671 TTGTACTTAGACGATTCCTCACATA 57.365 36.000 0.00 0.00 0.00 2.29
2017 2058 5.970317 TTGTACTTAGACGATTCCTCACA 57.030 39.130 0.00 0.00 0.00 3.58
2025 2066 5.533482 GATCCTGCATTGTACTTAGACGAT 58.467 41.667 0.00 0.00 0.00 3.73
2029 2070 3.492656 GCCGATCCTGCATTGTACTTAGA 60.493 47.826 0.00 0.00 0.00 2.10
2030 2071 2.802816 GCCGATCCTGCATTGTACTTAG 59.197 50.000 0.00 0.00 0.00 2.18
2034 2075 1.064060 GTTGCCGATCCTGCATTGTAC 59.936 52.381 5.49 0.00 38.76 2.90
2035 2076 1.339535 TGTTGCCGATCCTGCATTGTA 60.340 47.619 5.49 0.00 38.76 2.41
2037 2078 0.179156 GTGTTGCCGATCCTGCATTG 60.179 55.000 5.49 0.00 38.76 2.82
2059 2100 4.180946 CCGGCGGTCACTCTCGAG 62.181 72.222 19.97 5.93 0.00 4.04
2090 2131 1.065418 CCCCGACAGTTCAGGCTTAAT 60.065 52.381 0.00 0.00 0.00 1.40
2123 2164 1.936656 GCGATGCAACTGACAGTCTCA 60.937 52.381 8.93 10.10 0.00 3.27
2129 2170 2.359850 GGGGCGATGCAACTGACA 60.360 61.111 0.00 0.00 0.00 3.58
2147 2210 4.127907 GTCTCCGAGAGAAAAACCAAACT 58.872 43.478 0.00 0.00 40.59 2.66
2181 2245 6.832520 ATCTCATATCTTGTGCTCTCGTAT 57.167 37.500 0.00 0.00 0.00 3.06
2191 2255 6.595682 ACCCAATCGAAATCTCATATCTTGT 58.404 36.000 0.00 0.00 0.00 3.16
2233 2297 3.118956 CGCTTAATCCCTCACTCTTGACT 60.119 47.826 0.00 0.00 0.00 3.41
2251 2315 0.756903 ATAGTACCATTCCGCCGCTT 59.243 50.000 0.00 0.00 0.00 4.68
2257 2321 7.176165 TCACTATACCAGAATAGTACCATTCCG 59.824 40.741 9.99 0.87 40.02 4.30
2261 2325 9.601810 TGAATCACTATACCAGAATAGTACCAT 57.398 33.333 0.00 0.00 40.02 3.55
2305 2369 5.494724 ACATCAATGTGAGTCTTGCTGTAT 58.505 37.500 0.00 0.00 40.03 2.29
2308 2372 4.761235 AACATCAATGTGAGTCTTGCTG 57.239 40.909 0.00 0.00 41.61 4.41
2313 2377 7.067372 TCTGAACAAAAACATCAATGTGAGTCT 59.933 33.333 0.00 0.00 41.61 3.24
2350 2414 1.076192 CCGCCACTCCCTAGTACCT 60.076 63.158 0.00 0.00 33.48 3.08
2353 2417 0.040058 TGAACCGCCACTCCCTAGTA 59.960 55.000 0.00 0.00 33.48 1.82
2355 2419 1.218316 GTGAACCGCCACTCCCTAG 59.782 63.158 0.00 0.00 34.38 3.02
2368 2432 3.610911 CTCCCCATAGAAACCTGTGAAC 58.389 50.000 0.00 0.00 0.00 3.18
2377 2441 0.764890 CCATCGGCTCCCCATAGAAA 59.235 55.000 0.00 0.00 0.00 2.52
2389 2453 1.072159 CCTCCTTGATCCCATCGGC 59.928 63.158 0.00 0.00 0.00 5.54
2396 2460 1.715785 CTCCTCCTCCTCCTTGATCC 58.284 60.000 0.00 0.00 0.00 3.36
2409 2473 4.583907 ACGTTAATAGTTCCTAGCTCCTCC 59.416 45.833 0.00 0.00 0.00 4.30
2425 2489 8.258007 TCATACTCATTTCTCAGGAACGTTAAT 58.742 33.333 0.00 0.00 0.00 1.40
2437 2501 6.769822 ACCATGGTTGATCATACTCATTTCTC 59.230 38.462 13.00 0.00 0.00 2.87
2468 2532 0.399075 ACTTCGTTGAAATCCCCGGT 59.601 50.000 0.00 0.00 0.00 5.28
2476 2540 7.760794 TCACTTTTGTCTAGTACTTCGTTGAAA 59.239 33.333 0.00 0.00 0.00 2.69
2494 2558 4.821805 ACACCTCCATACTGTTCACTTTTG 59.178 41.667 0.00 0.00 0.00 2.44
2495 2559 5.048846 ACACCTCCATACTGTTCACTTTT 57.951 39.130 0.00 0.00 0.00 2.27
2499 2563 4.243270 GTGTACACCTCCATACTGTTCAC 58.757 47.826 15.42 0.00 31.70 3.18
2508 2572 1.909302 CTTCCCTGTGTACACCTCCAT 59.091 52.381 22.91 0.00 0.00 3.41
2521 2585 3.350833 CTCCATTTTCCACTCTTCCCTG 58.649 50.000 0.00 0.00 0.00 4.45
2577 2641 1.296715 CCTGTGTAGCCCAGGTCAC 59.703 63.158 0.00 0.00 43.73 3.67
2604 2668 5.882557 CCATCTTGCCTATTATCCCATGTAC 59.117 44.000 0.00 0.00 0.00 2.90
2605 2669 5.551583 ACCATCTTGCCTATTATCCCATGTA 59.448 40.000 0.00 0.00 0.00 2.29
2614 2678 6.569127 TTCCTGTTACCATCTTGCCTATTA 57.431 37.500 0.00 0.00 0.00 0.98
2644 2708 0.541863 ACCCACGATCCAATCTGACC 59.458 55.000 0.00 0.00 0.00 4.02
2650 2714 1.379843 GCCCAACCCACGATCCAAT 60.380 57.895 0.00 0.00 0.00 3.16
2662 2726 1.581934 TGAATCGATCATCGCCCAAC 58.418 50.000 0.80 0.00 40.21 3.77
2668 2732 4.492611 ACATCTCCATGAATCGATCATCG 58.507 43.478 0.00 0.00 45.91 3.84
2704 2768 3.501349 AGTGGTCTGTACATGAGTGACT 58.499 45.455 0.00 0.00 0.00 3.41
2710 2774 2.165641 CGGCTTAGTGGTCTGTACATGA 59.834 50.000 0.00 0.00 0.00 3.07
2725 2789 1.743623 CGCACAATGGTCCGGCTTA 60.744 57.895 0.00 0.00 0.00 3.09
2726 2790 3.055719 CGCACAATGGTCCGGCTT 61.056 61.111 0.00 0.00 0.00 4.35
2753 2817 4.623002 GCCTAGTCTGACTTGCTAATACC 58.377 47.826 16.53 0.00 0.00 2.73
2772 2836 2.267006 CTCCATCAGTGTGCGCCT 59.733 61.111 4.18 0.00 0.00 5.52
2776 2840 4.142609 TCTATTTCCTCCATCAGTGTGC 57.857 45.455 0.00 0.00 0.00 4.57
2779 2843 5.207110 ACGATCTATTTCCTCCATCAGTG 57.793 43.478 0.00 0.00 0.00 3.66
2797 2861 3.785486 TGCATTCTCGAATCTGAACGAT 58.215 40.909 9.84 0.00 37.86 3.73
2798 2862 3.230743 TGCATTCTCGAATCTGAACGA 57.769 42.857 9.23 9.23 37.03 3.85
2809 2873 1.293924 GTCTGGTCCATGCATTCTCG 58.706 55.000 0.00 0.00 0.00 4.04
2830 2894 8.148351 TCTTCCATAGTTTGAGTATAATTCCCG 58.852 37.037 0.00 0.00 0.00 5.14
2842 2906 4.335416 CCCAAGCTTCTTCCATAGTTTGA 58.665 43.478 0.00 0.00 35.41 2.69
2848 2912 0.258774 GGGCCCAAGCTTCTTCCATA 59.741 55.000 19.95 0.00 39.73 2.74
2849 2913 1.000866 GGGCCCAAGCTTCTTCCAT 59.999 57.895 19.95 0.00 39.73 3.41
2857 2921 3.224007 ATTCGTTGGGGCCCAAGCT 62.224 57.895 37.82 19.23 44.82 3.74
2869 2933 1.612950 TGTTGCAGATTGCCATTCGTT 59.387 42.857 0.00 0.00 44.23 3.85
2874 2938 2.029649 GTCACTTGTTGCAGATTGCCAT 60.030 45.455 0.00 0.00 44.23 4.40
2881 2945 1.875514 GCATCTGTCACTTGTTGCAGA 59.124 47.619 0.00 0.00 40.43 4.26
2893 2957 0.249238 CTACTCCCAGCGCATCTGTC 60.249 60.000 11.47 0.00 41.25 3.51
2894 2958 0.972983 ACTACTCCCAGCGCATCTGT 60.973 55.000 11.47 4.15 41.25 3.41
2903 2967 3.153919 GCCTATCTCTCACTACTCCCAG 58.846 54.545 0.00 0.00 0.00 4.45
2910 2974 6.547880 CCAGTTTCTTAGCCTATCTCTCACTA 59.452 42.308 0.00 0.00 0.00 2.74
2931 2995 3.073650 ACCAAATTCTTCTCTGCTCCAGT 59.926 43.478 0.00 0.00 32.61 4.00
2998 3063 3.403038 TCCAAAGTGAGCTTGCTCTTAC 58.597 45.455 21.17 13.05 34.71 2.34
3000 3065 2.645838 TCCAAAGTGAGCTTGCTCTT 57.354 45.000 21.17 7.57 34.71 2.85
3009 3074 0.685097 TCGGACCCTTCCAAAGTGAG 59.315 55.000 0.00 0.00 43.00 3.51
3045 3110 5.067674 CAGTTCAGAGATTCTCCTGACTAGG 59.932 48.000 10.09 0.00 46.06 3.02
3051 3116 3.734597 CGAGCAGTTCAGAGATTCTCCTG 60.735 52.174 10.09 10.79 0.00 3.86
3060 3125 1.018226 CCCTTGCGAGCAGTTCAGAG 61.018 60.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.