Multiple sequence alignment - TraesCS7A01G335000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G335000 chr7A 100.000 2737 0 0 1 2737 490163701 490166437 0.000000e+00 5055.0
1 TraesCS7A01G335000 chr7D 85.127 2360 158 82 16 2276 438746772 438749037 0.000000e+00 2235.0
2 TraesCS7A01G335000 chr7D 77.246 334 47 5 2407 2737 438749073 438749380 4.690000e-38 169.0
3 TraesCS7A01G335000 chr7B 82.549 1530 134 54 561 2037 454791427 454789978 0.000000e+00 1223.0
4 TraesCS7A01G335000 chr7B 86.278 532 38 14 16 528 454793095 454792580 1.850000e-151 545.0
5 TraesCS7A01G335000 chr7B 87.311 331 25 2 2407 2737 454729784 454729471 2.000000e-96 363.0
6 TraesCS7A01G335000 chr7B 92.105 38 2 1 2345 2381 485428323 485428360 5.000000e-03 52.8
7 TraesCS7A01G335000 chr7B 92.105 38 2 1 2345 2381 552786045 552786008 5.000000e-03 52.8
8 TraesCS7A01G335000 chr5B 87.500 72 9 0 2301 2372 538580747 538580818 1.750000e-12 84.2
9 TraesCS7A01G335000 chr6D 78.571 112 17 3 2303 2408 68660267 68660157 1.760000e-07 67.6
10 TraesCS7A01G335000 chr4A 80.723 83 13 3 2301 2381 22728074 22728155 8.180000e-06 62.1
11 TraesCS7A01G335000 chr4A 85.000 60 6 3 2324 2381 615367803 615367861 1.060000e-04 58.4
12 TraesCS7A01G335000 chr6A 96.970 33 1 0 2338 2370 617095806 617095774 3.810000e-04 56.5
13 TraesCS7A01G335000 chr1B 100.000 30 0 0 2343 2372 674052936 674052965 3.810000e-04 56.5
14 TraesCS7A01G335000 chr4B 92.105 38 2 1 2345 2381 3549623 3549660 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G335000 chr7A 490163701 490166437 2736 False 5055 5055 100.0000 1 2737 1 chr7A.!!$F1 2736
1 TraesCS7A01G335000 chr7D 438746772 438749380 2608 False 1202 2235 81.1865 16 2737 2 chr7D.!!$F1 2721
2 TraesCS7A01G335000 chr7B 454789978 454793095 3117 True 884 1223 84.4135 16 2037 2 chr7B.!!$R3 2021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 1802 0.039346 GGCCGGATCGAGCTAACTAC 60.039 60.0 5.05 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2583 3850 0.030101 TTTGCTGGTGTGTAAAGCGC 59.97 50.0 0.0 0.0 39.88 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 29 5.841957 TCGGAACACCTACCTCTTTATAC 57.158 43.478 0.00 0.00 0.00 1.47
51 53 2.556559 GGGGGCAGGTTACAAAGAATCA 60.557 50.000 0.00 0.00 0.00 2.57
58 60 4.278170 CAGGTTACAAAGAATCAGTGGCAA 59.722 41.667 0.00 0.00 0.00 4.52
74 76 1.076485 CAATGGAGGGCTTGGGAGG 60.076 63.158 0.00 0.00 0.00 4.30
122 127 1.004745 TCCCACCATTCAAGAGCCTTC 59.995 52.381 0.00 0.00 0.00 3.46
126 131 0.749454 CCATTCAAGAGCCTTCGGGG 60.749 60.000 0.00 0.00 35.16 5.73
138 143 2.576615 CCTTCGGGGATTGAATCTTCC 58.423 52.381 5.03 6.59 37.23 3.46
143 148 1.134098 GGGGATTGAATCTTCCGAGCA 60.134 52.381 5.03 0.00 32.48 4.26
171 176 1.343506 CATTTCAGCGCTTTCCTTGC 58.656 50.000 7.50 0.00 0.00 4.01
194 208 1.062488 ACAGAACCCTCCAAGCTGGT 61.062 55.000 0.00 0.00 39.03 4.00
195 209 0.607489 CAGAACCCTCCAAGCTGGTG 60.607 60.000 0.00 0.00 39.03 4.17
221 235 0.467804 GCATCTGGGGTTCCTCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
223 237 2.691241 GCATCTGGGGTTCCTCTCTCTA 60.691 54.545 0.00 0.00 0.00 2.43
224 238 2.830651 TCTGGGGTTCCTCTCTCTAC 57.169 55.000 0.00 0.00 0.00 2.59
226 240 3.471879 TCTGGGGTTCCTCTCTCTACTA 58.528 50.000 0.00 0.00 0.00 1.82
227 241 3.202595 TCTGGGGTTCCTCTCTCTACTAC 59.797 52.174 0.00 0.00 0.00 2.73
228 242 3.199671 TGGGGTTCCTCTCTCTACTACT 58.800 50.000 0.00 0.00 0.00 2.57
232 246 4.823442 GGGTTCCTCTCTCTACTACTAAGC 59.177 50.000 0.00 0.00 0.00 3.09
233 247 4.512571 GGTTCCTCTCTCTACTACTAAGCG 59.487 50.000 0.00 0.00 0.00 4.68
234 248 3.731089 TCCTCTCTCTACTACTAAGCGC 58.269 50.000 0.00 0.00 0.00 5.92
235 249 3.388676 TCCTCTCTCTACTACTAAGCGCT 59.611 47.826 2.64 2.64 0.00 5.92
236 250 4.131596 CCTCTCTCTACTACTAAGCGCTT 58.868 47.826 27.97 27.97 0.00 4.68
292 308 4.459089 GGAGCGAGTGTCCCTGGC 62.459 72.222 0.00 0.00 44.56 4.85
328 344 2.034687 GAGTGGGTGTGCAGGCAT 59.965 61.111 0.00 0.00 0.00 4.40
360 380 3.256558 CGGCCCGTACCTAATAAATAGC 58.743 50.000 0.00 0.00 0.00 2.97
363 383 3.853475 CCCGTACCTAATAAATAGCCCG 58.147 50.000 0.00 0.00 0.00 6.13
364 384 3.259123 CCCGTACCTAATAAATAGCCCGT 59.741 47.826 0.00 0.00 0.00 5.28
405 441 2.031807 CCAGCAGAGATCGCAATCTTTG 59.968 50.000 0.83 0.83 42.46 2.77
429 465 4.573950 GCATGCATTTCCCGGCCG 62.574 66.667 21.04 21.04 0.00 6.13
487 527 1.296867 GGCGTGAATCGTCAATGCG 60.297 57.895 0.00 0.00 44.22 4.73
507 547 1.817099 CACTCATTCTCCGCTGGCC 60.817 63.158 0.00 0.00 0.00 5.36
525 565 4.129737 GCTACGGACGAGCAGCCA 62.130 66.667 0.00 0.00 39.84 4.75
526 566 2.103143 CTACGGACGAGCAGCCAG 59.897 66.667 0.00 0.00 0.00 4.85
527 567 4.129737 TACGGACGAGCAGCCAGC 62.130 66.667 0.00 0.00 46.19 4.85
538 578 1.003839 CAGCCAGCCTAACGGTGAA 60.004 57.895 0.00 0.00 42.92 3.18
552 592 2.332063 GGTGAACGATGACCATCCAT 57.668 50.000 0.00 0.00 34.40 3.41
555 595 2.609459 GTGAACGATGACCATCCATGAC 59.391 50.000 0.00 0.00 34.40 3.06
557 597 2.609427 ACGATGACCATCCATGACTG 57.391 50.000 0.00 0.00 34.40 3.51
563 1728 2.234661 TGACCATCCATGACTGAGTGAC 59.765 50.000 0.00 0.00 0.00 3.67
635 1800 1.115930 ATGGCCGGATCGAGCTAACT 61.116 55.000 5.05 0.00 0.00 2.24
636 1801 0.466739 TGGCCGGATCGAGCTAACTA 60.467 55.000 5.05 0.00 0.00 2.24
637 1802 0.039346 GGCCGGATCGAGCTAACTAC 60.039 60.000 5.05 0.00 0.00 2.73
652 1817 4.381718 GCTAACTACTAACTCACCCACCAG 60.382 50.000 0.00 0.00 0.00 4.00
653 1818 3.255634 ACTACTAACTCACCCACCAGT 57.744 47.619 0.00 0.00 0.00 4.00
655 1820 4.342359 ACTACTAACTCACCCACCAGTAG 58.658 47.826 0.00 0.00 40.69 2.57
660 1830 3.759815 ACTCACCCACCAGTAGTATCT 57.240 47.619 0.00 0.00 0.00 1.98
671 1841 6.078479 CACCAGTAGTATCTATTAACGCTCG 58.922 44.000 0.00 0.00 0.00 5.03
672 1842 5.994054 ACCAGTAGTATCTATTAACGCTCGA 59.006 40.000 0.00 0.00 0.00 4.04
709 1879 1.695893 GCATATCACAGTGCGCACGT 61.696 55.000 32.94 28.53 36.20 4.49
710 1880 1.555477 CATATCACAGTGCGCACGTA 58.445 50.000 32.94 21.10 36.20 3.57
711 1881 1.255342 CATATCACAGTGCGCACGTAC 59.745 52.381 32.94 11.50 36.20 3.67
712 1882 0.795358 TATCACAGTGCGCACGTACG 60.795 55.000 32.94 23.99 35.88 3.67
713 1883 3.762992 CACAGTGCGCACGTACGG 61.763 66.667 32.94 22.39 35.88 4.02
728 1898 4.036977 CGGCCGCCGTGTATTATT 57.963 55.556 24.08 0.00 42.73 1.40
729 1899 3.198187 CGGCCGCCGTGTATTATTA 57.802 52.632 24.08 0.00 42.73 0.98
730 1900 0.785979 CGGCCGCCGTGTATTATTAC 59.214 55.000 24.08 0.00 42.73 1.89
731 1901 1.603678 CGGCCGCCGTGTATTATTACT 60.604 52.381 24.08 0.00 42.73 2.24
732 1902 2.064014 GGCCGCCGTGTATTATTACTC 58.936 52.381 0.00 0.00 0.00 2.59
794 1964 2.681421 CCTTTTGCTCCCCCTGCC 60.681 66.667 0.00 0.00 0.00 4.85
795 1965 2.442413 CTTTTGCTCCCCCTGCCT 59.558 61.111 0.00 0.00 0.00 4.75
796 1966 1.980772 CTTTTGCTCCCCCTGCCTG 60.981 63.158 0.00 0.00 0.00 4.85
797 1967 4.684134 TTTGCTCCCCCTGCCTGC 62.684 66.667 0.00 0.00 0.00 4.85
852 2022 4.063967 CTACGCGGCCTGTGTGGA 62.064 66.667 19.53 0.00 41.66 4.02
853 2023 3.371097 CTACGCGGCCTGTGTGGAT 62.371 63.158 19.53 0.64 41.66 3.41
854 2024 3.657448 TACGCGGCCTGTGTGGATG 62.657 63.158 19.53 0.00 42.47 3.51
857 2027 3.434319 CGGCCTGTGTGGATGCAC 61.434 66.667 10.90 10.90 38.35 4.57
898 2068 4.971125 GCTCCCATCCGCGGTAGC 62.971 72.222 27.15 21.43 40.74 3.58
900 2070 2.842462 TCCCATCCGCGGTAGCAT 60.842 61.111 27.15 8.36 45.49 3.79
901 2071 1.532078 TCCCATCCGCGGTAGCATA 60.532 57.895 27.15 4.32 45.49 3.14
911 2092 1.808411 CGGTAGCATAAATCCGCCAT 58.192 50.000 0.00 0.00 36.68 4.40
924 2113 1.439353 CCGCCATCACCTTTCCGATG 61.439 60.000 0.00 0.00 39.00 3.84
931 2120 3.695830 TCACCTTTCCGATGCTTTAGT 57.304 42.857 0.00 0.00 0.00 2.24
939 2128 1.466866 CCGATGCTTTAGTCACGACGA 60.467 52.381 0.00 0.00 36.20 4.20
947 2136 2.799916 GTCACGACGACGCCTGAC 60.800 66.667 13.19 13.19 43.96 3.51
948 2137 4.034258 TCACGACGACGCCTGACC 62.034 66.667 7.30 0.00 43.96 4.02
964 2153 0.107214 GACCGGCCTGATCAATCCAA 60.107 55.000 0.00 0.00 0.00 3.53
969 2158 1.401905 GGCCTGATCAATCCAACGAAC 59.598 52.381 0.00 0.00 0.00 3.95
972 2161 3.198068 CCTGATCAATCCAACGAACGAT 58.802 45.455 0.00 0.00 0.00 3.73
987 2176 1.519455 CGATCTTCTCGCCCACACC 60.519 63.158 0.00 0.00 41.14 4.16
988 2177 1.596934 GATCTTCTCGCCCACACCA 59.403 57.895 0.00 0.00 0.00 4.17
989 2178 0.741221 GATCTTCTCGCCCACACCAC 60.741 60.000 0.00 0.00 0.00 4.16
990 2179 1.480212 ATCTTCTCGCCCACACCACA 61.480 55.000 0.00 0.00 0.00 4.17
991 2180 1.961277 CTTCTCGCCCACACCACAC 60.961 63.158 0.00 0.00 0.00 3.82
992 2181 2.658679 CTTCTCGCCCACACCACACA 62.659 60.000 0.00 0.00 0.00 3.72
993 2182 2.933878 TTCTCGCCCACACCACACAC 62.934 60.000 0.00 0.00 0.00 3.82
994 2183 4.901123 TCGCCCACACCACACACG 62.901 66.667 0.00 0.00 0.00 4.49
996 2185 4.555709 GCCCACACCACACACGGA 62.556 66.667 0.00 0.00 0.00 4.69
997 2186 2.590575 CCCACACCACACACGGAC 60.591 66.667 0.00 0.00 0.00 4.79
998 2187 2.964925 CCACACCACACACGGACG 60.965 66.667 0.00 0.00 0.00 4.79
999 2188 2.105328 CACACCACACACGGACGA 59.895 61.111 0.00 0.00 0.00 4.20
1036 2229 4.072131 GGAGGTGAGTCAAACAAAGCATA 58.928 43.478 0.00 0.00 0.00 3.14
1037 2230 4.702131 GGAGGTGAGTCAAACAAAGCATAT 59.298 41.667 0.00 0.00 0.00 1.78
1038 2231 5.392380 GGAGGTGAGTCAAACAAAGCATATG 60.392 44.000 0.00 0.00 0.00 1.78
1039 2232 5.072741 AGGTGAGTCAAACAAAGCATATGT 58.927 37.500 4.29 0.00 0.00 2.29
1042 2235 4.083581 AGTCAAACAAAGCATATGTCGC 57.916 40.909 4.29 0.00 0.00 5.19
1050 2243 1.097547 AGCATATGTCGCTGTTGGCC 61.098 55.000 4.29 0.00 38.60 5.36
1064 2257 1.831736 GTTGGCCTGGTTCTCTAGCTA 59.168 52.381 3.32 0.00 0.00 3.32
1066 2259 0.391228 GGCCTGGTTCTCTAGCTAGC 59.609 60.000 16.35 6.62 0.00 3.42
1067 2260 1.408969 GCCTGGTTCTCTAGCTAGCT 58.591 55.000 23.12 23.12 0.00 3.32
1069 2262 1.606668 CCTGGTTCTCTAGCTAGCTCG 59.393 57.143 23.26 16.02 0.00 5.03
1070 2263 2.294074 CTGGTTCTCTAGCTAGCTCGT 58.706 52.381 23.26 0.00 0.00 4.18
1073 2266 2.424246 GGTTCTCTAGCTAGCTCGTGTT 59.576 50.000 23.26 0.00 0.00 3.32
1074 2267 3.430931 GTTCTCTAGCTAGCTCGTGTTG 58.569 50.000 23.26 7.10 0.00 3.33
1075 2268 1.402259 TCTCTAGCTAGCTCGTGTTGC 59.598 52.381 23.26 0.00 0.00 4.17
1084 2277 1.497278 CTCGTGTTGCATCGTTGGG 59.503 57.895 0.00 0.00 0.00 4.12
1089 2282 1.210155 GTTGCATCGTTGGGTGCTC 59.790 57.895 0.70 0.00 41.78 4.26
1101 2294 1.669115 GGTGCTCATGCGAGTGTGT 60.669 57.895 0.00 0.00 41.71 3.72
1107 2300 2.058798 CTCATGCGAGTGTGTTACGTT 58.941 47.619 0.00 0.00 34.29 3.99
1108 2301 3.239254 CTCATGCGAGTGTGTTACGTTA 58.761 45.455 0.00 0.00 34.29 3.18
1110 2303 1.397619 TGCGAGTGTGTTACGTTACG 58.602 50.000 2.19 2.19 0.00 3.18
1111 2304 1.268488 TGCGAGTGTGTTACGTTACGT 60.268 47.619 16.31 16.31 44.35 3.57
1112 2305 1.121257 GCGAGTGTGTTACGTTACGTG 59.879 52.381 21.22 1.07 41.39 4.49
1113 2306 1.121257 CGAGTGTGTTACGTTACGTGC 59.879 52.381 21.22 13.26 41.39 5.34
1114 2307 1.453148 GAGTGTGTTACGTTACGTGCC 59.547 52.381 21.22 10.84 41.39 5.01
1115 2308 1.067516 AGTGTGTTACGTTACGTGCCT 59.932 47.619 21.22 4.11 41.39 4.75
1116 2309 1.190763 GTGTGTTACGTTACGTGCCTG 59.809 52.381 21.22 0.00 41.39 4.85
1117 2310 1.202394 TGTGTTACGTTACGTGCCTGT 60.202 47.619 21.22 0.00 41.39 4.00
1118 2311 1.453148 GTGTTACGTTACGTGCCTGTC 59.547 52.381 21.22 5.02 41.39 3.51
1119 2312 0.704551 GTTACGTTACGTGCCTGTCG 59.295 55.000 21.22 0.00 41.39 4.35
1316 2518 2.124570 CCGCCCCAGATCAAGGTG 60.125 66.667 0.00 0.00 0.00 4.00
1333 2540 1.447663 TGCGCACACACGATATGCT 60.448 52.632 5.66 0.00 37.20 3.79
1340 2547 2.095853 CACACACGATATGCTTTGGGTC 59.904 50.000 0.00 0.00 0.00 4.46
1356 2563 1.457346 GGTCTCCAGGCTTGTCATTG 58.543 55.000 0.00 0.00 0.00 2.82
1370 2577 4.974368 TGTCATTGTTCGTCACCTTTTT 57.026 36.364 0.00 0.00 0.00 1.94
1373 2580 3.067461 TCATTGTTCGTCACCTTTTTGGG 59.933 43.478 0.00 0.00 41.11 4.12
1381 2588 3.842069 ACCTTTTTGGGTGGTCTCC 57.158 52.632 0.00 0.00 41.11 3.71
1382 2589 0.930726 ACCTTTTTGGGTGGTCTCCA 59.069 50.000 0.00 0.00 41.11 3.86
1383 2590 1.133482 ACCTTTTTGGGTGGTCTCCAG 60.133 52.381 0.00 0.00 41.11 3.86
1384 2591 1.144913 CCTTTTTGGGTGGTCTCCAGA 59.855 52.381 0.00 0.00 35.48 3.86
1385 2592 2.230660 CTTTTTGGGTGGTCTCCAGAC 58.769 52.381 0.00 0.00 44.04 3.51
1386 2593 1.518367 TTTTGGGTGGTCTCCAGACT 58.482 50.000 6.68 0.00 44.20 3.24
1387 2594 0.764890 TTTGGGTGGTCTCCAGACTG 59.235 55.000 6.68 0.00 44.20 3.51
1388 2595 0.105194 TTGGGTGGTCTCCAGACTGA 60.105 55.000 3.32 0.00 44.20 3.41
1389 2596 0.117140 TGGGTGGTCTCCAGACTGAT 59.883 55.000 3.32 0.00 44.20 2.90
1390 2597 1.280457 GGGTGGTCTCCAGACTGATT 58.720 55.000 3.32 0.00 44.20 2.57
1391 2598 1.208293 GGGTGGTCTCCAGACTGATTC 59.792 57.143 3.32 0.00 44.20 2.52
1392 2599 1.208293 GGTGGTCTCCAGACTGATTCC 59.792 57.143 3.32 1.88 44.20 3.01
1393 2600 1.208293 GTGGTCTCCAGACTGATTCCC 59.792 57.143 3.32 0.00 44.20 3.97
1402 2609 2.774234 CAGACTGATTCCCCTGGTGTAT 59.226 50.000 0.00 0.00 0.00 2.29
1403 2610 3.200825 CAGACTGATTCCCCTGGTGTATT 59.799 47.826 0.00 0.00 0.00 1.89
1435 2642 3.695060 GTCTCGTTCAGGTGATAAGGAGA 59.305 47.826 0.00 0.00 41.68 3.71
1610 2832 3.006752 TCGAAAGGTACGTGGGTGTTTAT 59.993 43.478 0.00 0.00 0.00 1.40
1611 2833 3.747529 CGAAAGGTACGTGGGTGTTTATT 59.252 43.478 0.00 0.00 0.00 1.40
1613 2835 5.163963 CGAAAGGTACGTGGGTGTTTATTAC 60.164 44.000 0.00 0.00 0.00 1.89
1614 2836 4.888326 AGGTACGTGGGTGTTTATTACA 57.112 40.909 0.00 0.00 0.00 2.41
1619 2841 3.250521 ACGTGGGTGTTTATTACAAACCG 59.749 43.478 0.00 0.00 38.80 4.44
1635 2857 0.976073 ACCGCCCTGCTCTAGCTTTA 60.976 55.000 3.26 0.00 42.66 1.85
1636 2858 0.530870 CCGCCCTGCTCTAGCTTTAC 60.531 60.000 3.26 0.00 42.66 2.01
1691 2913 2.038952 TGTTCAGATGAGGAAGGTGGTG 59.961 50.000 0.00 0.00 0.00 4.17
1730 2952 1.304713 CCTGGGGCTTGACTGCATT 60.305 57.895 0.00 0.00 34.04 3.56
1746 2968 2.036992 TGCATTGCCTAACAAAACTGGG 59.963 45.455 6.12 0.00 42.86 4.45
1750 2972 1.133637 TGCCTAACAAAACTGGGAGCA 60.134 47.619 0.00 0.00 0.00 4.26
1774 2996 6.864360 GCTTATCATCTTCAAGCTTCATCT 57.136 37.500 0.00 0.00 41.14 2.90
1844 3073 1.482593 CTCTGTTCGCCCCTATTGTCT 59.517 52.381 0.00 0.00 0.00 3.41
1874 3103 6.115448 ACAACTAGCTTCCACTTATCAACT 57.885 37.500 0.00 0.00 0.00 3.16
1879 3108 4.573900 AGCTTCCACTTATCAACTGAGTG 58.426 43.478 0.00 0.00 40.31 3.51
1881 3110 4.757149 GCTTCCACTTATCAACTGAGTGTT 59.243 41.667 0.00 0.00 39.28 3.32
1882 3111 5.106908 GCTTCCACTTATCAACTGAGTGTTC 60.107 44.000 0.00 0.00 39.28 3.18
1883 3112 5.808366 TCCACTTATCAACTGAGTGTTCT 57.192 39.130 0.00 0.00 39.28 3.01
1884 3113 6.911250 TCCACTTATCAACTGAGTGTTCTA 57.089 37.500 0.00 0.00 39.28 2.10
1920 3151 8.905103 TTTTTAGAAGTTTTCAGTAACACTGC 57.095 30.769 1.34 0.00 45.54 4.40
2036 3267 3.490761 GCTAAAGCCAGCACTTTTGTTCA 60.491 43.478 4.95 0.00 40.32 3.18
2043 3275 4.244862 CCAGCACTTTTGTTCACTTGTTT 58.755 39.130 0.00 0.00 0.00 2.83
2046 3278 4.220602 AGCACTTTTGTTCACTTGTTTCCT 59.779 37.500 0.00 0.00 0.00 3.36
2052 3284 6.773976 TTTGTTCACTTGTTTCCTGATCTT 57.226 33.333 0.00 0.00 0.00 2.40
2056 3288 5.034852 TCACTTGTTTCCTGATCTTGACA 57.965 39.130 0.00 0.00 0.00 3.58
2097 3333 8.822652 AAATAAACTGAAATCAAGGCTTGAAG 57.177 30.769 31.57 25.08 43.95 3.02
2108 3344 4.802999 CAAGGCTTGAAGATTCCTTGTTC 58.197 43.478 22.64 0.00 46.34 3.18
2110 3346 2.162408 GGCTTGAAGATTCCTTGTTCCG 59.838 50.000 0.00 0.00 31.62 4.30
2112 3348 3.691609 GCTTGAAGATTCCTTGTTCCGAT 59.308 43.478 0.00 0.00 31.62 4.18
2114 3350 5.674820 GCTTGAAGATTCCTTGTTCCGATTC 60.675 44.000 0.00 0.00 31.62 2.52
2124 3360 4.634443 CCTTGTTCCGATTCGTAAATCCTT 59.366 41.667 5.20 0.00 38.46 3.36
2131 3367 6.575267 TCCGATTCGTAAATCCTTGTATGAA 58.425 36.000 5.20 0.00 38.46 2.57
2153 3389 9.914131 ATGAATTAGAGTTTTTCTTTTAGGTGC 57.086 29.630 0.00 0.00 37.36 5.01
2154 3390 8.908903 TGAATTAGAGTTTTTCTTTTAGGTGCA 58.091 29.630 0.00 0.00 37.36 4.57
2163 3401 8.915654 GTTTTTCTTTTAGGTGCATATGAGTTG 58.084 33.333 6.97 0.00 0.00 3.16
2165 3403 4.640201 TCTTTTAGGTGCATATGAGTTGGC 59.360 41.667 6.97 0.00 0.00 4.52
2187 3425 5.863935 GGCACTAAAAATGAAAGGATCACAC 59.136 40.000 0.00 0.00 41.93 3.82
2231 3469 9.793259 AACTATAAAGATTCAAACTGAACTGGA 57.207 29.630 0.00 0.00 39.45 3.86
2232 3470 9.442047 ACTATAAAGATTCAAACTGAACTGGAG 57.558 33.333 0.00 0.00 39.45 3.86
2234 3472 8.697507 ATAAAGATTCAAACTGAACTGGAGTT 57.302 30.769 0.00 0.00 39.45 3.01
2246 3484 5.434352 GAACTGGAGTTTTAGTTCCCAAC 57.566 43.478 0.00 0.00 44.30 3.77
2249 3487 6.256643 ACTGGAGTTTTAGTTCCCAACTTA 57.743 37.500 0.00 0.00 42.81 2.24
2265 3503 8.713708 TCCCAACTTAAATTAACCAGATTTGA 57.286 30.769 0.00 0.00 0.00 2.69
2275 3539 9.758651 AAATTAACCAGATTTGAGTTAAACACC 57.241 29.630 11.39 0.00 38.90 4.16
2276 3540 5.784578 AACCAGATTTGAGTTAAACACCC 57.215 39.130 0.00 0.00 0.00 4.61
2277 3541 3.818773 ACCAGATTTGAGTTAAACACCCG 59.181 43.478 0.00 0.00 0.00 5.28
2283 3547 0.796927 GAGTTAAACACCCGCTCAGC 59.203 55.000 0.00 0.00 0.00 4.26
2299 3563 2.125912 GCGTGATGACGGTCAGCT 60.126 61.111 24.77 5.95 46.20 4.24
2300 3564 1.738099 GCGTGATGACGGTCAGCTT 60.738 57.895 24.77 5.19 46.20 3.74
2301 3565 1.291877 GCGTGATGACGGTCAGCTTT 61.292 55.000 24.77 4.81 46.20 3.51
2302 3566 1.148310 CGTGATGACGGTCAGCTTTT 58.852 50.000 24.77 4.42 42.18 2.27
2303 3567 1.136252 CGTGATGACGGTCAGCTTTTG 60.136 52.381 24.77 9.88 42.18 2.44
2304 3568 1.873591 GTGATGACGGTCAGCTTTTGT 59.126 47.619 24.77 2.93 33.24 2.83
2305 3569 1.872952 TGATGACGGTCAGCTTTTGTG 59.127 47.619 24.77 0.00 33.24 3.33
2306 3570 2.143122 GATGACGGTCAGCTTTTGTGA 58.857 47.619 18.45 0.00 28.67 3.58
2307 3571 1.581934 TGACGGTCAGCTTTTGTGAG 58.418 50.000 6.76 0.00 0.00 3.51
2308 3572 0.235926 GACGGTCAGCTTTTGTGAGC 59.764 55.000 2.62 0.00 43.02 4.26
2309 3573 1.166531 ACGGTCAGCTTTTGTGAGCC 61.167 55.000 0.00 0.00 43.74 4.70
2310 3574 1.165907 CGGTCAGCTTTTGTGAGCCA 61.166 55.000 0.00 0.00 43.74 4.75
2311 3575 0.595095 GGTCAGCTTTTGTGAGCCAG 59.405 55.000 0.00 0.00 43.74 4.85
2312 3576 1.597742 GTCAGCTTTTGTGAGCCAGA 58.402 50.000 0.00 0.00 43.74 3.86
2313 3577 1.265365 GTCAGCTTTTGTGAGCCAGAC 59.735 52.381 0.00 4.92 43.74 3.51
2314 3578 1.141657 TCAGCTTTTGTGAGCCAGACT 59.858 47.619 0.00 0.00 43.74 3.24
2315 3579 1.952296 CAGCTTTTGTGAGCCAGACTT 59.048 47.619 0.00 0.00 43.74 3.01
2316 3580 3.141398 CAGCTTTTGTGAGCCAGACTTA 58.859 45.455 0.00 0.00 43.74 2.24
2317 3581 3.058639 CAGCTTTTGTGAGCCAGACTTAC 60.059 47.826 0.00 0.00 43.74 2.34
2318 3582 2.878406 GCTTTTGTGAGCCAGACTTACA 59.122 45.455 0.00 0.00 42.69 2.41
2319 3583 3.304057 GCTTTTGTGAGCCAGACTTACAC 60.304 47.826 0.00 0.00 43.94 2.90
2320 3584 3.838244 TTTGTGAGCCAGACTTACACT 57.162 42.857 0.00 0.00 43.94 3.55
2321 3585 3.838244 TTGTGAGCCAGACTTACACTT 57.162 42.857 0.00 0.00 43.94 3.16
2322 3586 3.111853 TGTGAGCCAGACTTACACTTG 57.888 47.619 0.00 0.00 39.77 3.16
2323 3587 2.698274 TGTGAGCCAGACTTACACTTGA 59.302 45.455 0.00 0.00 39.77 3.02
2324 3588 3.243873 TGTGAGCCAGACTTACACTTGAG 60.244 47.826 0.00 0.00 39.77 3.02
2325 3589 3.005897 GTGAGCCAGACTTACACTTGAGA 59.994 47.826 0.00 0.00 35.03 3.27
2326 3590 3.005897 TGAGCCAGACTTACACTTGAGAC 59.994 47.826 0.00 0.00 0.00 3.36
2327 3591 3.235200 AGCCAGACTTACACTTGAGACT 58.765 45.455 0.00 0.00 0.00 3.24
2328 3592 3.643792 AGCCAGACTTACACTTGAGACTT 59.356 43.478 0.00 0.00 0.00 3.01
2329 3593 3.743396 GCCAGACTTACACTTGAGACTTG 59.257 47.826 0.00 0.00 0.00 3.16
2330 3594 4.740934 GCCAGACTTACACTTGAGACTTGT 60.741 45.833 0.00 0.00 0.00 3.16
2331 3595 4.985409 CCAGACTTACACTTGAGACTTGTC 59.015 45.833 0.00 0.00 0.00 3.18
2332 3596 5.221342 CCAGACTTACACTTGAGACTTGTCT 60.221 44.000 2.59 2.59 33.26 3.41
2333 3597 6.276847 CAGACTTACACTTGAGACTTGTCTT 58.723 40.000 4.67 0.00 31.02 3.01
2334 3598 6.758886 CAGACTTACACTTGAGACTTGTCTTT 59.241 38.462 4.67 0.00 31.02 2.52
2335 3599 6.758886 AGACTTACACTTGAGACTTGTCTTTG 59.241 38.462 4.67 3.64 0.00 2.77
2336 3600 5.294552 ACTTACACTTGAGACTTGTCTTTGC 59.705 40.000 4.67 0.00 0.00 3.68
2337 3601 3.609853 ACACTTGAGACTTGTCTTTGCA 58.390 40.909 4.67 0.00 0.00 4.08
2338 3602 3.375299 ACACTTGAGACTTGTCTTTGCAC 59.625 43.478 4.67 0.00 0.00 4.57
2339 3603 3.624861 CACTTGAGACTTGTCTTTGCACT 59.375 43.478 4.67 0.00 0.00 4.40
2340 3604 4.095483 CACTTGAGACTTGTCTTTGCACTT 59.905 41.667 4.67 0.00 0.00 3.16
2341 3605 4.095483 ACTTGAGACTTGTCTTTGCACTTG 59.905 41.667 4.67 0.00 0.00 3.16
2342 3606 3.609853 TGAGACTTGTCTTTGCACTTGT 58.390 40.909 4.67 0.00 0.00 3.16
2343 3607 4.009675 TGAGACTTGTCTTTGCACTTGTT 58.990 39.130 4.67 0.00 0.00 2.83
2344 3608 4.458989 TGAGACTTGTCTTTGCACTTGTTT 59.541 37.500 4.67 0.00 0.00 2.83
2345 3609 5.048083 TGAGACTTGTCTTTGCACTTGTTTT 60.048 36.000 4.67 0.00 0.00 2.43
2346 3610 6.150307 TGAGACTTGTCTTTGCACTTGTTTTA 59.850 34.615 4.67 0.00 0.00 1.52
2347 3611 6.919721 AGACTTGTCTTTGCACTTGTTTTAA 58.080 32.000 0.00 0.00 0.00 1.52
2348 3612 7.547227 AGACTTGTCTTTGCACTTGTTTTAAT 58.453 30.769 0.00 0.00 0.00 1.40
2349 3613 8.682710 AGACTTGTCTTTGCACTTGTTTTAATA 58.317 29.630 0.00 0.00 0.00 0.98
2350 3614 9.296400 GACTTGTCTTTGCACTTGTTTTAATAA 57.704 29.630 0.00 0.00 0.00 1.40
2351 3615 9.816354 ACTTGTCTTTGCACTTGTTTTAATAAT 57.184 25.926 0.00 0.00 0.00 1.28
2356 3620 9.364989 TCTTTGCACTTGTTTTAATAATATGGC 57.635 29.630 0.00 0.00 0.00 4.40
2357 3621 9.369904 CTTTGCACTTGTTTTAATAATATGGCT 57.630 29.630 0.00 0.00 0.00 4.75
2358 3622 8.700722 TTGCACTTGTTTTAATAATATGGCTG 57.299 30.769 0.00 0.00 0.00 4.85
2359 3623 6.756074 TGCACTTGTTTTAATAATATGGCTGC 59.244 34.615 0.00 0.00 0.00 5.25
2360 3624 6.756074 GCACTTGTTTTAATAATATGGCTGCA 59.244 34.615 0.50 0.00 0.00 4.41
2361 3625 7.439056 GCACTTGTTTTAATAATATGGCTGCAT 59.561 33.333 0.50 0.00 0.00 3.96
2362 3626 8.757789 CACTTGTTTTAATAATATGGCTGCATG 58.242 33.333 0.50 0.00 0.00 4.06
2363 3627 7.439056 ACTTGTTTTAATAATATGGCTGCATGC 59.561 33.333 11.82 11.82 41.94 4.06
2364 3628 6.814043 TGTTTTAATAATATGGCTGCATGCA 58.186 32.000 21.29 21.29 45.15 3.96
2365 3629 7.443477 TGTTTTAATAATATGGCTGCATGCAT 58.557 30.769 22.97 9.00 45.15 3.96
2366 3630 7.599621 TGTTTTAATAATATGGCTGCATGCATC 59.400 33.333 22.97 17.75 45.15 3.91
2367 3631 6.837471 TTAATAATATGGCTGCATGCATCA 57.163 33.333 22.97 21.78 45.15 3.07
2368 3632 4.713824 ATAATATGGCTGCATGCATCAC 57.286 40.909 22.97 14.61 45.15 3.06
2369 3633 2.287977 ATATGGCTGCATGCATCACT 57.712 45.000 22.97 10.38 45.15 3.41
2370 3634 1.601166 TATGGCTGCATGCATCACTC 58.399 50.000 22.97 9.58 45.15 3.51
2371 3635 0.106669 ATGGCTGCATGCATCACTCT 60.107 50.000 22.97 5.48 45.15 3.24
2372 3636 0.542805 TGGCTGCATGCATCACTCTA 59.457 50.000 22.97 3.57 45.15 2.43
2373 3637 1.227639 GGCTGCATGCATCACTCTAG 58.772 55.000 22.97 7.95 45.15 2.43
2374 3638 1.227639 GCTGCATGCATCACTCTAGG 58.772 55.000 22.97 7.15 42.31 3.02
2375 3639 1.227639 CTGCATGCATCACTCTAGGC 58.772 55.000 22.97 0.00 0.00 3.93
2376 3640 0.179037 TGCATGCATCACTCTAGGCC 60.179 55.000 18.46 0.00 0.00 5.19
2377 3641 1.226686 GCATGCATCACTCTAGGCCG 61.227 60.000 14.21 0.00 0.00 6.13
2378 3642 0.390492 CATGCATCACTCTAGGCCGA 59.610 55.000 0.00 0.00 0.00 5.54
2379 3643 0.678395 ATGCATCACTCTAGGCCGAG 59.322 55.000 6.52 6.52 37.07 4.63
2380 3644 1.365633 GCATCACTCTAGGCCGAGG 59.634 63.158 13.44 6.43 35.33 4.63
2381 3645 2.045280 CATCACTCTAGGCCGAGGG 58.955 63.158 11.81 11.81 35.74 4.30
2382 3646 0.757188 CATCACTCTAGGCCGAGGGT 60.757 60.000 13.42 13.42 35.88 4.34
2383 3647 0.032017 ATCACTCTAGGCCGAGGGTT 60.032 55.000 16.82 0.00 35.88 4.11
2384 3648 0.627451 TCACTCTAGGCCGAGGGTTA 59.373 55.000 16.82 5.53 35.88 2.85
2385 3649 1.217183 TCACTCTAGGCCGAGGGTTAT 59.783 52.381 16.82 0.00 35.88 1.89
2386 3650 2.040178 CACTCTAGGCCGAGGGTTATT 58.960 52.381 16.82 0.00 35.33 1.40
2387 3651 2.036089 CACTCTAGGCCGAGGGTTATTC 59.964 54.545 16.82 0.00 35.33 1.75
2388 3652 2.091222 ACTCTAGGCCGAGGGTTATTCT 60.091 50.000 13.42 0.00 35.33 2.40
2389 3653 2.559231 CTCTAGGCCGAGGGTTATTCTC 59.441 54.545 13.44 0.00 0.00 2.87
2390 3654 1.619332 CTAGGCCGAGGGTTATTCTCC 59.381 57.143 4.68 0.00 0.00 3.71
2391 3655 0.031010 AGGCCGAGGGTTATTCTCCT 60.031 55.000 0.00 0.00 35.82 3.69
2392 3656 0.393448 GGCCGAGGGTTATTCTCCTC 59.607 60.000 0.00 0.00 44.50 3.71
2424 3688 5.567138 AAAAATGATGACCTCCAACGATC 57.433 39.130 0.00 0.00 0.00 3.69
2425 3689 3.912496 AATGATGACCTCCAACGATCA 57.088 42.857 0.00 0.00 0.00 2.92
2433 3697 1.541233 CCTCCAACGATCATAGTGCCC 60.541 57.143 0.00 0.00 0.00 5.36
2434 3698 1.414181 CTCCAACGATCATAGTGCCCT 59.586 52.381 0.00 0.00 0.00 5.19
2437 3701 2.419990 CCAACGATCATAGTGCCCTTCA 60.420 50.000 0.00 0.00 0.00 3.02
2439 3703 3.845781 ACGATCATAGTGCCCTTCAAT 57.154 42.857 0.00 0.00 0.00 2.57
2442 3706 3.744942 CGATCATAGTGCCCTTCAATCAG 59.255 47.826 0.00 0.00 0.00 2.90
2447 3711 6.291377 TCATAGTGCCCTTCAATCAGATTAC 58.709 40.000 0.00 0.00 0.00 1.89
2463 3730 8.715191 ATCAGATTACAATTCTCAAGAGTGAC 57.285 34.615 0.00 0.00 0.00 3.67
2472 3739 1.191489 TCAAGAGTGACGGGCCATGA 61.191 55.000 4.39 0.00 0.00 3.07
2476 3743 0.321653 GAGTGACGGGCCATGAAAGT 60.322 55.000 4.39 0.00 0.00 2.66
2479 3746 1.068541 GTGACGGGCCATGAAAGTTTC 60.069 52.381 4.39 8.75 0.00 2.78
2480 3747 0.526211 GACGGGCCATGAAAGTTTCC 59.474 55.000 13.01 0.00 0.00 3.13
2491 3758 5.407387 CCATGAAAGTTTCCTGCAAATGAAG 59.593 40.000 13.01 0.00 0.00 3.02
2492 3759 4.947645 TGAAAGTTTCCTGCAAATGAAGG 58.052 39.130 13.01 0.46 42.59 3.46
2526 3793 1.281867 TGTCTCACCTGGCCCATTTAG 59.718 52.381 0.00 0.00 0.00 1.85
2527 3794 1.559682 GTCTCACCTGGCCCATTTAGA 59.440 52.381 0.00 0.00 0.00 2.10
2528 3795 1.559682 TCTCACCTGGCCCATTTAGAC 59.440 52.381 0.00 0.00 0.00 2.59
2529 3796 1.281867 CTCACCTGGCCCATTTAGACA 59.718 52.381 0.00 0.00 0.00 3.41
2530 3797 1.281867 TCACCTGGCCCATTTAGACAG 59.718 52.381 0.00 0.00 0.00 3.51
2531 3798 3.502164 CCTGGCCCATTTAGACAGG 57.498 57.895 0.00 0.00 42.28 4.00
2532 3799 0.106519 CCTGGCCCATTTAGACAGGG 60.107 60.000 4.65 0.00 43.80 4.45
2542 3809 4.520492 CCATTTAGACAGGGCATATTCACC 59.480 45.833 0.00 0.00 0.00 4.02
2548 3815 1.597027 GGGCATATTCACCCCGTCG 60.597 63.158 0.00 0.00 40.56 5.12
2549 3816 1.145377 GGCATATTCACCCCGTCGT 59.855 57.895 0.00 0.00 0.00 4.34
2551 3818 0.935196 GCATATTCACCCCGTCGTTC 59.065 55.000 0.00 0.00 0.00 3.95
2555 3822 0.037605 ATTCACCCCGTCGTTCAGAC 60.038 55.000 0.00 0.00 46.16 3.51
2574 3841 4.212004 CAGACGAGATTCTCAAAGCACAAA 59.788 41.667 13.88 0.00 0.00 2.83
2575 3842 4.816385 AGACGAGATTCTCAAAGCACAAAA 59.184 37.500 13.88 0.00 0.00 2.44
2576 3843 5.296780 AGACGAGATTCTCAAAGCACAAAAA 59.703 36.000 13.88 0.00 0.00 1.94
2577 3844 5.514279 ACGAGATTCTCAAAGCACAAAAAG 58.486 37.500 13.88 0.00 0.00 2.27
2578 3845 5.296780 ACGAGATTCTCAAAGCACAAAAAGA 59.703 36.000 13.88 0.00 0.00 2.52
2579 3846 5.850128 CGAGATTCTCAAAGCACAAAAAGAG 59.150 40.000 13.88 0.00 0.00 2.85
2580 3847 6.512415 CGAGATTCTCAAAGCACAAAAAGAGT 60.512 38.462 13.88 0.00 0.00 3.24
2581 3848 7.105241 AGATTCTCAAAGCACAAAAAGAGTT 57.895 32.000 0.00 0.00 0.00 3.01
2582 3849 6.976925 AGATTCTCAAAGCACAAAAAGAGTTG 59.023 34.615 0.00 0.00 34.52 3.16
2583 3850 4.997565 TCTCAAAGCACAAAAAGAGTTGG 58.002 39.130 0.00 0.00 32.50 3.77
2597 3864 0.464735 AGTTGGCGCTTTACACACCA 60.465 50.000 7.64 0.00 0.00 4.17
2598 3865 0.040425 GTTGGCGCTTTACACACCAG 60.040 55.000 7.64 0.00 0.00 4.00
2599 3866 1.791103 TTGGCGCTTTACACACCAGC 61.791 55.000 7.64 0.00 0.00 4.85
2600 3867 2.258013 GGCGCTTTACACACCAGCA 61.258 57.895 7.64 0.00 32.71 4.41
2601 3868 1.652012 GCGCTTTACACACCAGCAA 59.348 52.632 0.00 0.00 32.71 3.91
2602 3869 0.030101 GCGCTTTACACACCAGCAAA 59.970 50.000 0.00 0.00 32.71 3.68
2603 3870 1.535015 GCGCTTTACACACCAGCAAAA 60.535 47.619 0.00 0.00 32.71 2.44
2604 3871 2.116366 CGCTTTACACACCAGCAAAAC 58.884 47.619 0.00 0.00 32.71 2.43
2605 3872 2.478709 CGCTTTACACACCAGCAAAACA 60.479 45.455 0.00 0.00 32.71 2.83
2606 3873 2.857748 GCTTTACACACCAGCAAAACAC 59.142 45.455 0.00 0.00 33.45 3.32
2607 3874 3.674682 GCTTTACACACCAGCAAAACACA 60.675 43.478 0.00 0.00 33.45 3.72
2608 3875 4.681744 CTTTACACACCAGCAAAACACAT 58.318 39.130 0.00 0.00 0.00 3.21
2609 3876 2.869233 ACACACCAGCAAAACACATC 57.131 45.000 0.00 0.00 0.00 3.06
2621 3888 1.159285 AACACATCACAGGCACATCG 58.841 50.000 0.00 0.00 0.00 3.84
2629 3896 0.035317 ACAGGCACATCGAGCTTGAA 59.965 50.000 7.99 0.00 41.07 2.69
2640 3907 2.224079 TCGAGCTTGAAATGAACACAGC 59.776 45.455 0.00 0.00 0.00 4.40
2641 3908 2.031769 CGAGCTTGAAATGAACACAGCA 60.032 45.455 0.00 0.00 0.00 4.41
2650 3917 7.160547 TGAAATGAACACAGCATCAACATAT 57.839 32.000 0.00 0.00 0.00 1.78
2658 3925 3.073062 ACAGCATCAACATATAGGACCCC 59.927 47.826 0.00 0.00 0.00 4.95
2659 3926 3.328931 CAGCATCAACATATAGGACCCCT 59.671 47.826 0.00 0.00 37.71 4.79
2660 3927 3.584848 AGCATCAACATATAGGACCCCTC 59.415 47.826 0.00 0.00 34.61 4.30
2661 3928 3.327757 GCATCAACATATAGGACCCCTCA 59.672 47.826 0.00 0.00 34.61 3.86
2662 3929 4.202461 GCATCAACATATAGGACCCCTCAA 60.202 45.833 0.00 0.00 34.61 3.02
2665 3932 4.408921 TCAACATATAGGACCCCTCAACAG 59.591 45.833 0.00 0.00 34.61 3.16
2670 3937 6.441924 ACATATAGGACCCCTCAACAGATATG 59.558 42.308 0.00 0.00 34.14 1.78
2686 3953 2.472695 TATGGGTGTCAAGCAGTCAC 57.527 50.000 0.00 0.00 35.84 3.67
2687 3954 0.603707 ATGGGTGTCAAGCAGTCACG 60.604 55.000 0.00 0.00 37.18 4.35
2702 3969 2.030412 ACGCGTGCAACCAGATCA 59.970 55.556 12.93 0.00 0.00 2.92
2703 3970 1.375908 ACGCGTGCAACCAGATCAT 60.376 52.632 12.93 0.00 0.00 2.45
2706 3973 0.654683 GCGTGCAACCAGATCATCTC 59.345 55.000 0.00 0.00 0.00 2.75
2709 3976 2.287103 CGTGCAACCAGATCATCTCATG 59.713 50.000 0.00 0.00 0.00 3.07
2718 3985 4.216472 CCAGATCATCTCATGCTTGATTGG 59.784 45.833 2.33 10.26 30.48 3.16
2722 3989 6.778069 AGATCATCTCATGCTTGATTGGAAAT 59.222 34.615 2.33 0.00 30.48 2.17
2723 3990 7.942894 AGATCATCTCATGCTTGATTGGAAATA 59.057 33.333 2.33 0.00 30.48 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.635699 AGAGGTAGGTGTTCCGAATTTT 57.364 40.909 0.00 0.00 39.05 1.82
1 2 4.635699 AAGAGGTAGGTGTTCCGAATTT 57.364 40.909 0.00 0.00 39.05 1.82
2 3 4.635699 AAAGAGGTAGGTGTTCCGAATT 57.364 40.909 0.00 0.00 39.05 2.17
3 4 5.952347 ATAAAGAGGTAGGTGTTCCGAAT 57.048 39.130 0.00 0.00 39.05 3.34
4 5 5.163622 CGTATAAAGAGGTAGGTGTTCCGAA 60.164 44.000 0.00 0.00 39.05 4.30
5 6 4.336433 CGTATAAAGAGGTAGGTGTTCCGA 59.664 45.833 0.00 0.00 39.05 4.55
6 7 4.336433 TCGTATAAAGAGGTAGGTGTTCCG 59.664 45.833 0.00 0.00 39.05 4.30
7 8 5.829829 CTCGTATAAAGAGGTAGGTGTTCC 58.170 45.833 0.00 0.00 32.38 3.62
27 29 0.676782 CTTTGTAACCTGCCCCCTCG 60.677 60.000 0.00 0.00 0.00 4.63
34 36 3.366374 GCCACTGATTCTTTGTAACCTGC 60.366 47.826 0.00 0.00 0.00 4.85
51 53 1.304713 CAAGCCCTCCATTGCCACT 60.305 57.895 0.00 0.00 0.00 4.00
58 60 0.850883 TTTCCTCCCAAGCCCTCCAT 60.851 55.000 0.00 0.00 0.00 3.41
74 76 4.072839 CCCAACAGAAGTAGAGGGTTTTC 58.927 47.826 0.00 0.00 32.65 2.29
122 127 1.871080 CTCGGAAGATTCAATCCCCG 58.129 55.000 18.12 18.12 43.18 5.73
126 131 4.688021 ACTAGTGCTCGGAAGATTCAATC 58.312 43.478 0.00 0.00 40.84 2.67
138 143 3.119291 CTGAAATGCCTACTAGTGCTCG 58.881 50.000 5.39 0.00 0.00 5.03
143 148 1.482593 AGCGCTGAAATGCCTACTAGT 59.517 47.619 10.39 0.00 0.00 2.57
171 176 2.093764 CAGCTTGGAGGGTTCTGTAGAG 60.094 54.545 0.00 0.00 0.00 2.43
206 220 2.838637 AGTAGAGAGAGGAACCCCAG 57.161 55.000 0.00 0.00 33.88 4.45
210 224 4.512571 CGCTTAGTAGTAGAGAGAGGAACC 59.487 50.000 0.00 0.00 0.00 3.62
212 226 4.128643 GCGCTTAGTAGTAGAGAGAGGAA 58.871 47.826 0.00 0.00 0.00 3.36
213 227 3.388676 AGCGCTTAGTAGTAGAGAGAGGA 59.611 47.826 2.64 0.00 0.00 3.71
221 235 6.148150 ACTCTGCTATAAGCGCTTAGTAGTAG 59.852 42.308 30.94 30.94 46.26 2.57
223 237 4.822896 ACTCTGCTATAAGCGCTTAGTAGT 59.177 41.667 31.36 22.67 46.26 2.73
224 238 5.180492 AGACTCTGCTATAAGCGCTTAGTAG 59.820 44.000 31.36 27.37 46.26 2.57
226 240 3.886505 AGACTCTGCTATAAGCGCTTAGT 59.113 43.478 31.36 24.12 46.26 2.24
227 241 4.497473 AGACTCTGCTATAAGCGCTTAG 57.503 45.455 31.36 22.98 46.26 2.18
228 242 4.920640 AAGACTCTGCTATAAGCGCTTA 57.079 40.909 30.48 30.48 46.26 3.09
232 246 4.737765 GTCTCAAAGACTCTGCTATAAGCG 59.262 45.833 0.00 0.00 42.24 4.68
233 247 4.737765 CGTCTCAAAGACTCTGCTATAAGC 59.262 45.833 5.63 0.00 42.92 3.09
234 248 5.885881 ACGTCTCAAAGACTCTGCTATAAG 58.114 41.667 5.63 0.00 42.92 1.73
235 249 5.899120 ACGTCTCAAAGACTCTGCTATAA 57.101 39.130 5.63 0.00 42.92 0.98
236 250 5.414765 TCAACGTCTCAAAGACTCTGCTATA 59.585 40.000 5.63 0.00 42.92 1.31
363 383 1.628846 AGTTACTCCACCCATGACCAC 59.371 52.381 0.00 0.00 0.00 4.16
364 384 1.906574 GAGTTACTCCACCCATGACCA 59.093 52.381 0.00 0.00 0.00 4.02
385 421 2.676839 ACAAAGATTGCGATCTCTGCTG 59.323 45.455 17.02 13.44 41.78 4.41
386 422 2.983229 ACAAAGATTGCGATCTCTGCT 58.017 42.857 17.02 2.21 41.78 4.24
487 527 1.817099 CCAGCGGAGAATGAGTGCC 60.817 63.158 0.00 0.00 0.00 5.01
525 565 0.892755 TCATCGTTCACCGTTAGGCT 59.107 50.000 0.00 0.00 42.76 4.58
526 566 0.997196 GTCATCGTTCACCGTTAGGC 59.003 55.000 0.00 0.00 42.76 3.93
527 567 1.067425 TGGTCATCGTTCACCGTTAGG 60.067 52.381 0.00 0.00 45.13 2.69
528 568 2.357327 TGGTCATCGTTCACCGTTAG 57.643 50.000 0.00 0.00 35.15 2.34
529 569 2.417651 GGATGGTCATCGTTCACCGTTA 60.418 50.000 5.05 0.00 38.69 3.18
535 575 2.501316 AGTCATGGATGGTCATCGTTCA 59.499 45.455 5.05 0.00 38.69 3.18
538 578 2.102084 CTCAGTCATGGATGGTCATCGT 59.898 50.000 5.05 0.00 38.69 3.73
540 580 3.133542 TCACTCAGTCATGGATGGTCATC 59.866 47.826 2.52 2.52 37.11 2.92
552 592 1.188219 GGAGCCTGGTCACTCAGTCA 61.188 60.000 0.00 0.00 34.48 3.41
555 595 2.279069 ACGGAGCCTGGTCACTCAG 61.279 63.158 0.00 0.00 34.48 3.35
557 597 2.262915 CACGGAGCCTGGTCACTC 59.737 66.667 0.00 0.00 0.00 3.51
590 1755 2.124570 CTGACATTCAGGCCCGGG 60.125 66.667 19.09 19.09 40.71 5.73
600 1765 2.108514 CATGGGCGACGCTGACATT 61.109 57.895 20.77 4.73 0.00 2.71
601 1766 2.512286 CATGGGCGACGCTGACAT 60.512 61.111 20.77 17.72 0.00 3.06
635 1800 4.393239 ACTACTGGTGGGTGAGTTAGTA 57.607 45.455 0.00 0.00 0.00 1.82
636 1801 3.255634 ACTACTGGTGGGTGAGTTAGT 57.744 47.619 0.00 0.00 0.00 2.24
637 1802 5.202004 AGATACTACTGGTGGGTGAGTTAG 58.798 45.833 0.00 0.00 0.00 2.34
652 1817 6.242829 GCTCTCGAGCGTTAATAGATACTAC 58.757 44.000 7.81 0.00 45.29 2.73
653 1818 6.406093 GCTCTCGAGCGTTAATAGATACTA 57.594 41.667 7.81 0.00 45.29 1.82
671 1841 3.302968 GCAAAGCGAACATGCTCTC 57.697 52.632 0.00 0.00 46.60 3.20
712 1882 2.064014 GAGTAATAATACACGGCGGCC 58.936 52.381 13.24 9.54 34.29 6.13
713 1883 2.746269 TGAGTAATAATACACGGCGGC 58.254 47.619 13.24 0.00 34.29 6.53
714 1884 3.180980 CGTTGAGTAATAATACACGGCGG 59.819 47.826 13.24 2.35 34.29 6.13
715 1885 3.361339 GCGTTGAGTAATAATACACGGCG 60.361 47.826 4.80 4.80 32.58 6.46
717 1887 4.317839 GCTGCGTTGAGTAATAATACACGG 60.318 45.833 2.65 0.00 32.58 4.94
718 1888 4.503007 AGCTGCGTTGAGTAATAATACACG 59.497 41.667 0.00 0.00 34.12 4.49
719 1889 5.728255 CAGCTGCGTTGAGTAATAATACAC 58.272 41.667 0.00 0.00 34.29 2.90
721 1891 4.762809 GCAGCTGCGTTGAGTAATAATAC 58.237 43.478 25.23 0.00 0.00 1.89
723 1893 3.951979 GCAGCTGCGTTGAGTAATAAT 57.048 42.857 25.23 0.00 0.00 1.28
794 1964 4.192000 CTGCACGTAGAAGGGCAG 57.808 61.111 6.83 6.83 46.47 4.85
795 1965 2.047274 GCTGCACGTAGAAGGGCA 60.047 61.111 0.00 0.00 34.66 5.36
796 1966 1.026718 ATTGCTGCACGTAGAAGGGC 61.027 55.000 0.00 0.00 0.00 5.19
797 1967 1.131126 CAATTGCTGCACGTAGAAGGG 59.869 52.381 0.00 0.00 0.00 3.95
840 2010 3.434319 GTGCATCCACACAGGCCG 61.434 66.667 0.00 0.00 41.67 6.13
841 2011 3.064324 GGTGCATCCACACAGGCC 61.064 66.667 0.00 0.00 43.88 5.19
842 2012 3.434319 CGGTGCATCCACACAGGC 61.434 66.667 0.00 0.00 43.88 4.85
843 2013 2.747460 CCGGTGCATCCACACAGG 60.747 66.667 0.00 0.00 46.89 4.00
844 2014 3.434319 GCCGGTGCATCCACACAG 61.434 66.667 1.90 0.00 43.88 3.66
845 2015 3.952508 AGCCGGTGCATCCACACA 61.953 61.111 1.90 0.00 43.88 3.72
846 2016 3.434319 CAGCCGGTGCATCCACAC 61.434 66.667 1.90 0.00 43.88 3.82
876 2046 2.717485 CGCGGATGGGAGCATTTG 59.283 61.111 0.00 0.00 0.00 2.32
898 2068 3.004734 GGAAAGGTGATGGCGGATTTATG 59.995 47.826 0.00 0.00 0.00 1.90
900 2070 2.650322 GGAAAGGTGATGGCGGATTTA 58.350 47.619 0.00 0.00 0.00 1.40
901 2071 1.474330 GGAAAGGTGATGGCGGATTT 58.526 50.000 0.00 0.00 0.00 2.17
911 2092 3.007506 TGACTAAAGCATCGGAAAGGTGA 59.992 43.478 0.00 0.00 30.86 4.02
924 2113 1.671880 GGCGTCGTCGTGACTAAAGC 61.672 60.000 3.66 0.91 45.87 3.51
931 2120 4.034258 GGTCAGGCGTCGTCGTGA 62.034 66.667 3.66 7.60 39.49 4.35
947 2136 1.439353 CGTTGGATTGATCAGGCCGG 61.439 60.000 0.00 0.00 0.00 6.13
948 2137 0.461870 TCGTTGGATTGATCAGGCCG 60.462 55.000 0.00 0.00 0.00 6.13
949 2138 1.401905 GTTCGTTGGATTGATCAGGCC 59.598 52.381 0.00 0.00 0.00 5.19
950 2139 1.062587 CGTTCGTTGGATTGATCAGGC 59.937 52.381 0.00 0.00 0.00 4.85
972 2161 2.137528 TGTGGTGTGGGCGAGAAGA 61.138 57.895 0.00 0.00 0.00 2.87
987 2176 0.598942 TGTCCATTCGTCCGTGTGTG 60.599 55.000 0.00 0.00 0.00 3.82
988 2177 0.320374 ATGTCCATTCGTCCGTGTGT 59.680 50.000 0.00 0.00 0.00 3.72
989 2178 0.721154 CATGTCCATTCGTCCGTGTG 59.279 55.000 0.00 0.00 0.00 3.82
990 2179 0.391130 CCATGTCCATTCGTCCGTGT 60.391 55.000 0.00 0.00 0.00 4.49
991 2180 0.108377 TCCATGTCCATTCGTCCGTG 60.108 55.000 0.00 0.00 0.00 4.94
992 2181 0.175760 CTCCATGTCCATTCGTCCGT 59.824 55.000 0.00 0.00 0.00 4.69
993 2182 0.459899 TCTCCATGTCCATTCGTCCG 59.540 55.000 0.00 0.00 0.00 4.79
994 2183 2.487934 CATCTCCATGTCCATTCGTCC 58.512 52.381 0.00 0.00 0.00 4.79
995 2184 2.103094 TCCATCTCCATGTCCATTCGTC 59.897 50.000 0.00 0.00 0.00 4.20
996 2185 2.103771 CTCCATCTCCATGTCCATTCGT 59.896 50.000 0.00 0.00 0.00 3.85
997 2186 2.549563 CCTCCATCTCCATGTCCATTCG 60.550 54.545 0.00 0.00 0.00 3.34
998 2187 2.441001 ACCTCCATCTCCATGTCCATTC 59.559 50.000 0.00 0.00 0.00 2.67
999 2188 2.174210 CACCTCCATCTCCATGTCCATT 59.826 50.000 0.00 0.00 0.00 3.16
1036 2229 2.360350 CCAGGCCAACAGCGACAT 60.360 61.111 5.01 0.00 45.17 3.06
1037 2230 3.414136 AACCAGGCCAACAGCGACA 62.414 57.895 5.01 0.00 45.17 4.35
1038 2231 2.594592 AACCAGGCCAACAGCGAC 60.595 61.111 5.01 0.00 45.17 5.19
1039 2232 2.281484 GAACCAGGCCAACAGCGA 60.281 61.111 5.01 0.00 45.17 4.93
1042 2235 1.677217 GCTAGAGAACCAGGCCAACAG 60.677 57.143 5.01 0.00 0.00 3.16
1050 2243 2.032799 CACGAGCTAGCTAGAGAACCAG 59.967 54.545 28.76 9.55 0.00 4.00
1064 2257 1.568612 CCAACGATGCAACACGAGCT 61.569 55.000 15.81 0.00 0.00 4.09
1066 2259 1.227999 ACCCAACGATGCAACACGAG 61.228 55.000 15.81 8.93 0.00 4.18
1067 2260 1.227704 ACCCAACGATGCAACACGA 60.228 52.632 15.81 0.00 0.00 4.35
1069 2262 1.371635 GCACCCAACGATGCAACAC 60.372 57.895 0.00 0.00 41.65 3.32
1070 2263 1.514678 GAGCACCCAACGATGCAACA 61.515 55.000 0.00 0.00 44.59 3.33
1073 2266 1.002257 ATGAGCACCCAACGATGCA 60.002 52.632 0.00 0.00 44.59 3.96
1074 2267 1.430632 CATGAGCACCCAACGATGC 59.569 57.895 0.00 0.00 42.39 3.91
1075 2268 1.430632 GCATGAGCACCCAACGATG 59.569 57.895 0.00 0.00 41.58 3.84
1084 2277 1.126846 GTAACACACTCGCATGAGCAC 59.873 52.381 0.00 0.00 46.69 4.40
1089 2282 2.222202 CGTAACGTAACACACTCGCATG 60.222 50.000 0.00 0.00 0.00 4.06
1101 2294 0.590682 TCGACAGGCACGTAACGTAA 59.409 50.000 0.00 0.00 38.32 3.18
1107 2300 2.566529 CTGCTCGACAGGCACGTA 59.433 61.111 7.01 0.00 43.19 3.57
1115 2308 2.234143 CCTATCATCCTCTGCTCGACA 58.766 52.381 0.00 0.00 0.00 4.35
1116 2309 1.543802 CCCTATCATCCTCTGCTCGAC 59.456 57.143 0.00 0.00 0.00 4.20
1117 2310 1.145945 ACCCTATCATCCTCTGCTCGA 59.854 52.381 0.00 0.00 0.00 4.04
1118 2311 1.271934 CACCCTATCATCCTCTGCTCG 59.728 57.143 0.00 0.00 0.00 5.03
1119 2312 1.001860 GCACCCTATCATCCTCTGCTC 59.998 57.143 0.00 0.00 0.00 4.26
1158 2351 0.038251 TCGCTGCAGTAGTTCCACAG 60.038 55.000 16.64 0.00 0.00 3.66
1328 2530 0.255890 GCCTGGAGACCCAAAGCATA 59.744 55.000 0.00 0.00 42.98 3.14
1333 2540 0.110486 GACAAGCCTGGAGACCCAAA 59.890 55.000 0.00 0.00 42.98 3.28
1340 2547 1.466167 CGAACAATGACAAGCCTGGAG 59.534 52.381 0.00 0.00 0.00 3.86
1370 2577 0.117140 ATCAGTCTGGAGACCACCCA 59.883 55.000 3.08 0.00 45.85 4.51
1373 2580 1.208293 GGGAATCAGTCTGGAGACCAC 59.792 57.143 3.08 0.00 45.85 4.16
1377 2584 1.871418 CAGGGGAATCAGTCTGGAGA 58.129 55.000 0.00 0.00 0.00 3.71
1381 2588 0.987294 ACACCAGGGGAATCAGTCTG 59.013 55.000 0.00 0.00 0.00 3.51
1382 2589 2.642171 TACACCAGGGGAATCAGTCT 57.358 50.000 0.00 0.00 0.00 3.24
1383 2590 3.933861 AATACACCAGGGGAATCAGTC 57.066 47.619 0.00 0.00 0.00 3.51
1384 2591 4.675063 AAAATACACCAGGGGAATCAGT 57.325 40.909 0.00 0.00 0.00 3.41
1403 2610 2.294074 CTGAACGAGACCACCCAAAAA 58.706 47.619 0.00 0.00 0.00 1.94
1419 2626 4.399618 CGACTTCTCTCCTTATCACCTGAA 59.600 45.833 0.00 0.00 0.00 3.02
1435 2642 0.251832 TCTGCTTCTCCCCGACTTCT 60.252 55.000 0.00 0.00 0.00 2.85
1537 2756 0.323178 TGTAGAGGTCCTCGTCCACC 60.323 60.000 13.41 0.23 35.36 4.61
1575 2794 5.390145 CGTACCTTTCGAGGTTTTTGGTATG 60.390 44.000 3.08 0.00 42.99 2.39
1610 2832 0.978151 TAGAGCAGGGCGGTTTGTAA 59.022 50.000 0.00 0.00 0.00 2.41
1611 2833 0.535335 CTAGAGCAGGGCGGTTTGTA 59.465 55.000 0.00 0.00 0.00 2.41
1613 2835 2.109126 GCTAGAGCAGGGCGGTTTG 61.109 63.158 0.00 0.00 41.59 2.93
1614 2836 1.842381 AAGCTAGAGCAGGGCGGTTT 61.842 55.000 4.01 0.00 45.16 3.27
1619 2841 1.946745 CAGTAAAGCTAGAGCAGGGC 58.053 55.000 4.01 0.00 45.16 5.19
1635 2857 0.666374 GTTAACCGTTGCAAGGCAGT 59.334 50.000 13.63 4.54 40.61 4.40
1636 2858 0.951558 AGTTAACCGTTGCAAGGCAG 59.048 50.000 13.63 3.90 40.61 4.85
1691 2913 0.251341 ACCCAATCCACAAGCTCCAC 60.251 55.000 0.00 0.00 0.00 4.02
1730 2952 1.133637 TGCTCCCAGTTTTGTTAGGCA 60.134 47.619 0.00 0.00 0.00 4.75
1746 2968 4.471157 GCTTGAAGATGATAAGCTGCTC 57.529 45.455 1.00 0.00 42.55 4.26
1844 3073 2.233922 GTGGAAGCTAGTTGTAGAGCCA 59.766 50.000 0.00 0.00 39.65 4.75
1920 3151 8.534333 AATACACACACAAGTTACAGATAGTG 57.466 34.615 0.00 0.00 0.00 2.74
2003 3234 1.147153 GCTTTAGCCATCGGGAGCT 59.853 57.895 0.00 0.00 43.20 4.09
2036 3267 4.580580 GGTTGTCAAGATCAGGAAACAAGT 59.419 41.667 0.00 0.00 0.00 3.16
2043 3275 4.136796 CAAGTTGGTTGTCAAGATCAGGA 58.863 43.478 0.00 0.00 35.80 3.86
2046 3278 5.192927 AGTTCAAGTTGGTTGTCAAGATCA 58.807 37.500 2.34 0.00 37.43 2.92
2052 3284 3.254470 TCGAGTTCAAGTTGGTTGTCA 57.746 42.857 2.34 0.00 37.43 3.58
2056 3288 7.066525 TCAGTTTATTTCGAGTTCAAGTTGGTT 59.933 33.333 2.34 0.00 0.00 3.67
2097 3333 5.789710 TTTACGAATCGGAACAAGGAATC 57.210 39.130 7.80 0.00 25.49 2.52
2108 3344 6.838198 TTCATACAAGGATTTACGAATCGG 57.162 37.500 7.80 0.00 42.12 4.18
2140 3376 6.350110 GCCAACTCATATGCACCTAAAAGAAA 60.350 38.462 0.00 0.00 0.00 2.52
2142 3378 4.640201 GCCAACTCATATGCACCTAAAAGA 59.360 41.667 0.00 0.00 0.00 2.52
2143 3379 4.398988 TGCCAACTCATATGCACCTAAAAG 59.601 41.667 0.00 0.00 0.00 2.27
2146 3382 3.278574 GTGCCAACTCATATGCACCTAA 58.721 45.455 0.00 0.00 46.33 2.69
2147 3383 2.917933 GTGCCAACTCATATGCACCTA 58.082 47.619 0.00 0.00 46.33 3.08
2148 3384 1.755179 GTGCCAACTCATATGCACCT 58.245 50.000 0.00 0.00 46.33 4.00
2151 3387 5.973899 TTTTTAGTGCCAACTCATATGCA 57.026 34.783 0.00 0.00 37.88 3.96
2152 3388 6.563422 TCATTTTTAGTGCCAACTCATATGC 58.437 36.000 0.00 0.00 37.88 3.14
2153 3389 8.984891 TTTCATTTTTAGTGCCAACTCATATG 57.015 30.769 0.00 0.00 37.88 1.78
2154 3390 8.253113 CCTTTCATTTTTAGTGCCAACTCATAT 58.747 33.333 0.00 0.00 37.88 1.78
2163 3401 5.863935 GTGTGATCCTTTCATTTTTAGTGCC 59.136 40.000 0.00 0.00 36.54 5.01
2226 3464 4.790718 AGTTGGGAACTAAAACTCCAGT 57.209 40.909 0.00 0.00 40.69 4.00
2227 3465 7.576861 TTTAAGTTGGGAACTAAAACTCCAG 57.423 36.000 0.00 0.00 41.91 3.86
2228 3466 8.541899 AATTTAAGTTGGGAACTAAAACTCCA 57.458 30.769 0.00 0.00 41.91 3.86
2234 3472 9.643735 TCTGGTTAATTTAAGTTGGGAACTAAA 57.356 29.630 0.00 0.00 41.91 1.85
2249 3487 9.758651 GGTGTTTAACTCAAATCTGGTTAATTT 57.241 29.630 0.00 0.00 36.00 1.82
2265 3503 2.928416 GCTGAGCGGGTGTTTAACT 58.072 52.632 0.00 0.00 0.00 2.24
2277 3541 2.125912 ACCGTCATCACGCTGAGC 60.126 61.111 0.00 0.00 45.29 4.26
2283 3547 1.136252 CAAAAGCTGACCGTCATCACG 60.136 52.381 0.62 0.00 46.29 4.35
2284 3548 1.873591 ACAAAAGCTGACCGTCATCAC 59.126 47.619 0.62 0.00 0.00 3.06
2294 3558 1.141657 AGTCTGGCTCACAAAAGCTGA 59.858 47.619 0.00 0.00 42.13 4.26
2295 3559 1.602311 AGTCTGGCTCACAAAAGCTG 58.398 50.000 0.00 0.00 42.13 4.24
2296 3560 2.355010 AAGTCTGGCTCACAAAAGCT 57.645 45.000 0.00 0.00 42.13 3.74
2297 3561 2.878406 TGTAAGTCTGGCTCACAAAAGC 59.122 45.455 0.00 0.00 41.73 3.51
2298 3562 4.130118 AGTGTAAGTCTGGCTCACAAAAG 58.870 43.478 4.26 0.00 0.00 2.27
2299 3563 4.150897 AGTGTAAGTCTGGCTCACAAAA 57.849 40.909 4.26 0.00 0.00 2.44
2300 3564 3.838244 AGTGTAAGTCTGGCTCACAAA 57.162 42.857 4.26 0.00 0.00 2.83
2301 3565 3.133901 TCAAGTGTAAGTCTGGCTCACAA 59.866 43.478 4.26 0.00 0.00 3.33
2302 3566 2.698274 TCAAGTGTAAGTCTGGCTCACA 59.302 45.455 4.26 0.00 0.00 3.58
2303 3567 3.005897 TCTCAAGTGTAAGTCTGGCTCAC 59.994 47.826 0.00 0.00 0.00 3.51
2304 3568 3.005897 GTCTCAAGTGTAAGTCTGGCTCA 59.994 47.826 0.00 0.00 0.00 4.26
2305 3569 3.257127 AGTCTCAAGTGTAAGTCTGGCTC 59.743 47.826 0.00 0.00 0.00 4.70
2306 3570 3.235200 AGTCTCAAGTGTAAGTCTGGCT 58.765 45.455 0.00 0.00 0.00 4.75
2307 3571 3.669251 AGTCTCAAGTGTAAGTCTGGC 57.331 47.619 0.00 0.00 0.00 4.85
2308 3572 4.950050 ACAAGTCTCAAGTGTAAGTCTGG 58.050 43.478 0.00 0.00 0.00 3.86
2309 3573 5.837437 AGACAAGTCTCAAGTGTAAGTCTG 58.163 41.667 0.00 0.00 34.17 3.51
2310 3574 6.472686 AAGACAAGTCTCAAGTGTAAGTCT 57.527 37.500 2.78 0.00 39.39 3.24
2311 3575 6.510317 GCAAAGACAAGTCTCAAGTGTAAGTC 60.510 42.308 2.78 0.00 39.39 3.01
2312 3576 5.294552 GCAAAGACAAGTCTCAAGTGTAAGT 59.705 40.000 2.78 0.00 39.39 2.24
2313 3577 5.294306 TGCAAAGACAAGTCTCAAGTGTAAG 59.706 40.000 2.78 0.00 39.39 2.34
2314 3578 5.064707 GTGCAAAGACAAGTCTCAAGTGTAA 59.935 40.000 2.78 0.00 39.39 2.41
2315 3579 4.570772 GTGCAAAGACAAGTCTCAAGTGTA 59.429 41.667 2.78 0.00 39.39 2.90
2316 3580 3.375299 GTGCAAAGACAAGTCTCAAGTGT 59.625 43.478 2.78 0.00 39.39 3.55
2317 3581 3.624861 AGTGCAAAGACAAGTCTCAAGTG 59.375 43.478 2.78 1.81 39.39 3.16
2318 3582 3.878778 AGTGCAAAGACAAGTCTCAAGT 58.121 40.909 2.78 0.00 39.39 3.16
2319 3583 4.095483 ACAAGTGCAAAGACAAGTCTCAAG 59.905 41.667 2.78 0.00 39.39 3.02
2320 3584 4.009675 ACAAGTGCAAAGACAAGTCTCAA 58.990 39.130 2.78 0.00 39.39 3.02
2321 3585 3.609853 ACAAGTGCAAAGACAAGTCTCA 58.390 40.909 2.78 0.00 39.39 3.27
2322 3586 4.622701 AACAAGTGCAAAGACAAGTCTC 57.377 40.909 2.78 0.00 39.39 3.36
2323 3587 5.391312 AAAACAAGTGCAAAGACAAGTCT 57.609 34.783 0.00 0.00 42.75 3.24
2324 3588 7.755582 ATTAAAACAAGTGCAAAGACAAGTC 57.244 32.000 0.00 0.00 0.00 3.01
2325 3589 9.816354 ATTATTAAAACAAGTGCAAAGACAAGT 57.184 25.926 0.00 0.00 0.00 3.16
2330 3594 9.364989 GCCATATTATTAAAACAAGTGCAAAGA 57.635 29.630 0.00 0.00 0.00 2.52
2331 3595 9.369904 AGCCATATTATTAAAACAAGTGCAAAG 57.630 29.630 0.00 0.00 0.00 2.77
2332 3596 9.149225 CAGCCATATTATTAAAACAAGTGCAAA 57.851 29.630 0.00 0.00 0.00 3.68
2333 3597 7.277539 GCAGCCATATTATTAAAACAAGTGCAA 59.722 33.333 0.00 0.00 0.00 4.08
2334 3598 6.756074 GCAGCCATATTATTAAAACAAGTGCA 59.244 34.615 0.00 0.00 0.00 4.57
2335 3599 6.756074 TGCAGCCATATTATTAAAACAAGTGC 59.244 34.615 0.00 0.00 0.00 4.40
2336 3600 8.757789 CATGCAGCCATATTATTAAAACAAGTG 58.242 33.333 0.00 0.00 0.00 3.16
2337 3601 7.439056 GCATGCAGCCATATTATTAAAACAAGT 59.561 33.333 14.21 0.00 37.23 3.16
2338 3602 7.438757 TGCATGCAGCCATATTATTAAAACAAG 59.561 33.333 18.46 0.00 44.83 3.16
2339 3603 7.270779 TGCATGCAGCCATATTATTAAAACAA 58.729 30.769 18.46 0.00 44.83 2.83
2340 3604 6.814043 TGCATGCAGCCATATTATTAAAACA 58.186 32.000 18.46 0.00 44.83 2.83
2341 3605 7.599621 TGATGCATGCAGCCATATTATTAAAAC 59.400 33.333 31.30 0.00 44.83 2.43
2342 3606 7.599621 GTGATGCATGCAGCCATATTATTAAAA 59.400 33.333 31.30 6.57 44.83 1.52
2343 3607 7.039574 AGTGATGCATGCAGCCATATTATTAAA 60.040 33.333 31.30 6.79 44.83 1.52
2344 3608 6.434965 AGTGATGCATGCAGCCATATTATTAA 59.565 34.615 31.30 7.33 44.83 1.40
2345 3609 5.947566 AGTGATGCATGCAGCCATATTATTA 59.052 36.000 31.30 8.11 44.83 0.98
2346 3610 4.770531 AGTGATGCATGCAGCCATATTATT 59.229 37.500 31.30 8.21 44.83 1.40
2347 3611 4.341487 AGTGATGCATGCAGCCATATTAT 58.659 39.130 31.30 9.02 44.83 1.28
2348 3612 3.754850 GAGTGATGCATGCAGCCATATTA 59.245 43.478 31.30 10.43 44.83 0.98
2349 3613 2.557056 GAGTGATGCATGCAGCCATATT 59.443 45.455 31.30 11.36 44.83 1.28
2350 3614 2.160205 GAGTGATGCATGCAGCCATAT 58.840 47.619 31.30 19.42 44.83 1.78
2351 3615 1.142262 AGAGTGATGCATGCAGCCATA 59.858 47.619 31.30 12.00 44.83 2.74
2352 3616 0.106669 AGAGTGATGCATGCAGCCAT 60.107 50.000 31.30 20.40 44.83 4.40
2353 3617 0.542805 TAGAGTGATGCATGCAGCCA 59.457 50.000 31.30 24.21 44.83 4.75
2354 3618 1.227639 CTAGAGTGATGCATGCAGCC 58.772 55.000 31.30 22.08 44.83 4.85
2355 3619 1.227639 CCTAGAGTGATGCATGCAGC 58.772 55.000 28.44 28.44 45.96 5.25
2356 3620 1.227639 GCCTAGAGTGATGCATGCAG 58.772 55.000 26.69 9.90 0.00 4.41
2357 3621 0.179037 GGCCTAGAGTGATGCATGCA 60.179 55.000 25.04 25.04 0.00 3.96
2358 3622 1.226686 CGGCCTAGAGTGATGCATGC 61.227 60.000 11.82 11.82 0.00 4.06
2359 3623 0.390492 TCGGCCTAGAGTGATGCATG 59.610 55.000 2.46 0.00 0.00 4.06
2360 3624 0.678395 CTCGGCCTAGAGTGATGCAT 59.322 55.000 0.00 0.00 33.75 3.96
2361 3625 1.395045 CCTCGGCCTAGAGTGATGCA 61.395 60.000 5.70 0.00 36.56 3.96
2362 3626 1.365633 CCTCGGCCTAGAGTGATGC 59.634 63.158 5.70 0.00 36.56 3.91
2363 3627 0.757188 ACCCTCGGCCTAGAGTGATG 60.757 60.000 5.70 0.00 36.56 3.07
2364 3628 0.032017 AACCCTCGGCCTAGAGTGAT 60.032 55.000 5.70 0.00 36.56 3.06
2365 3629 0.627451 TAACCCTCGGCCTAGAGTGA 59.373 55.000 5.70 0.00 36.56 3.41
2366 3630 1.705873 ATAACCCTCGGCCTAGAGTG 58.294 55.000 5.70 0.00 36.56 3.51
2367 3631 2.091222 AGAATAACCCTCGGCCTAGAGT 60.091 50.000 5.70 0.00 36.56 3.24
2368 3632 2.559231 GAGAATAACCCTCGGCCTAGAG 59.441 54.545 5.70 3.01 37.97 2.43
2369 3633 2.595238 GAGAATAACCCTCGGCCTAGA 58.405 52.381 5.70 0.00 0.00 2.43
2370 3634 1.619332 GGAGAATAACCCTCGGCCTAG 59.381 57.143 0.00 0.00 0.00 3.02
2371 3635 1.219724 AGGAGAATAACCCTCGGCCTA 59.780 52.381 0.00 0.00 0.00 3.93
2372 3636 0.031010 AGGAGAATAACCCTCGGCCT 60.031 55.000 0.00 0.00 0.00 5.19
2373 3637 0.393448 GAGGAGAATAACCCTCGGCC 59.607 60.000 0.00 0.00 39.49 6.13
2374 3638 3.991242 GAGGAGAATAACCCTCGGC 57.009 57.895 0.00 0.00 39.49 5.54
2396 3660 8.364142 TCGTTGGAGGTCATCATTTTTATTTTT 58.636 29.630 0.00 0.00 0.00 1.94
2397 3661 7.891561 TCGTTGGAGGTCATCATTTTTATTTT 58.108 30.769 0.00 0.00 0.00 1.82
2398 3662 7.461182 TCGTTGGAGGTCATCATTTTTATTT 57.539 32.000 0.00 0.00 0.00 1.40
2399 3663 7.339212 TGATCGTTGGAGGTCATCATTTTTATT 59.661 33.333 0.00 0.00 0.00 1.40
2400 3664 6.828273 TGATCGTTGGAGGTCATCATTTTTAT 59.172 34.615 0.00 0.00 0.00 1.40
2401 3665 6.176896 TGATCGTTGGAGGTCATCATTTTTA 58.823 36.000 0.00 0.00 0.00 1.52
2402 3666 5.009631 TGATCGTTGGAGGTCATCATTTTT 58.990 37.500 0.00 0.00 0.00 1.94
2403 3667 4.588899 TGATCGTTGGAGGTCATCATTTT 58.411 39.130 0.00 0.00 0.00 1.82
2404 3668 4.220693 TGATCGTTGGAGGTCATCATTT 57.779 40.909 0.00 0.00 0.00 2.32
2405 3669 3.912496 TGATCGTTGGAGGTCATCATT 57.088 42.857 0.00 0.00 0.00 2.57
2406 3670 4.590647 ACTATGATCGTTGGAGGTCATCAT 59.409 41.667 0.00 0.00 33.65 2.45
2407 3671 3.960755 ACTATGATCGTTGGAGGTCATCA 59.039 43.478 0.00 0.00 33.65 3.07
2408 3672 4.302455 CACTATGATCGTTGGAGGTCATC 58.698 47.826 0.00 0.00 33.65 2.92
2409 3673 3.493350 GCACTATGATCGTTGGAGGTCAT 60.493 47.826 0.00 0.00 35.62 3.06
2410 3674 2.159099 GCACTATGATCGTTGGAGGTCA 60.159 50.000 0.00 0.00 0.00 4.02
2411 3675 2.474816 GCACTATGATCGTTGGAGGTC 58.525 52.381 0.00 0.00 0.00 3.85
2412 3676 1.139058 GGCACTATGATCGTTGGAGGT 59.861 52.381 0.00 0.00 0.00 3.85
2413 3677 1.541233 GGGCACTATGATCGTTGGAGG 60.541 57.143 0.00 0.00 0.00 4.30
2414 3678 1.414181 AGGGCACTATGATCGTTGGAG 59.586 52.381 0.00 0.00 0.00 3.86
2415 3679 1.496060 AGGGCACTATGATCGTTGGA 58.504 50.000 0.00 0.00 0.00 3.53
2424 3688 6.057533 TGTAATCTGATTGAAGGGCACTATG 58.942 40.000 13.01 0.00 0.00 2.23
2425 3689 6.252599 TGTAATCTGATTGAAGGGCACTAT 57.747 37.500 13.01 0.00 0.00 2.12
2434 3698 9.730705 ACTCTTGAGAATTGTAATCTGATTGAA 57.269 29.630 13.01 6.20 0.00 2.69
2437 3701 9.160496 GTCACTCTTGAGAATTGTAATCTGATT 57.840 33.333 8.14 8.14 30.10 2.57
2439 3703 6.808704 CGTCACTCTTGAGAATTGTAATCTGA 59.191 38.462 4.49 0.00 30.10 3.27
2442 3706 5.292101 CCCGTCACTCTTGAGAATTGTAATC 59.708 44.000 4.49 0.00 30.10 1.75
2447 3711 1.734465 GCCCGTCACTCTTGAGAATTG 59.266 52.381 4.49 0.00 30.10 2.32
2463 3730 0.527565 CAGGAAACTTTCATGGCCCG 59.472 55.000 0.00 0.00 40.21 6.13
2472 3739 3.732212 GCCTTCATTTGCAGGAAACTTT 58.268 40.909 0.08 0.00 40.21 2.66
2476 3743 1.327303 ACGCCTTCATTTGCAGGAAA 58.673 45.000 0.08 0.00 29.45 3.13
2479 3746 1.270550 AGAAACGCCTTCATTTGCAGG 59.729 47.619 1.17 0.00 36.40 4.85
2480 3747 2.030893 TGAGAAACGCCTTCATTTGCAG 60.031 45.455 1.17 0.00 36.40 4.41
2491 3758 1.996191 GAGACATCTGTGAGAAACGCC 59.004 52.381 0.00 0.00 0.00 5.68
2492 3759 2.410053 GTGAGACATCTGTGAGAAACGC 59.590 50.000 0.00 0.00 0.00 4.84
2526 3793 0.535102 CGGGGTGAATATGCCCTGTC 60.535 60.000 9.72 0.00 44.38 3.51
2527 3794 1.531748 CGGGGTGAATATGCCCTGT 59.468 57.895 9.72 0.00 44.38 4.00
2528 3795 4.481195 CGGGGTGAATATGCCCTG 57.519 61.111 9.34 7.27 44.25 4.45
2529 3796 1.837090 GACGGGGTGAATATGCCCT 59.163 57.895 9.34 0.00 44.25 5.19
2530 3797 1.597027 CGACGGGGTGAATATGCCC 60.597 63.158 2.52 2.52 44.09 5.36
2531 3798 0.463116 AACGACGGGGTGAATATGCC 60.463 55.000 0.00 0.00 0.00 4.40
2532 3799 0.935196 GAACGACGGGGTGAATATGC 59.065 55.000 0.00 0.00 0.00 3.14
2538 3805 3.045142 GTCTGAACGACGGGGTGA 58.955 61.111 0.00 0.00 32.04 4.02
2548 3815 3.990469 TGCTTTGAGAATCTCGTCTGAAC 59.010 43.478 5.73 0.00 34.92 3.18
2549 3816 3.990469 GTGCTTTGAGAATCTCGTCTGAA 59.010 43.478 5.73 0.00 34.92 3.02
2551 3818 3.320626 TGTGCTTTGAGAATCTCGTCTG 58.679 45.455 5.73 0.00 34.92 3.51
2555 3822 5.751680 TCTTTTTGTGCTTTGAGAATCTCG 58.248 37.500 5.73 0.00 34.92 4.04
2561 3828 4.677779 GCCAACTCTTTTTGTGCTTTGAGA 60.678 41.667 0.00 0.00 0.00 3.27
2574 3841 2.032924 GTGTGTAAAGCGCCAACTCTTT 59.967 45.455 2.29 0.00 35.15 2.52
2575 3842 1.602377 GTGTGTAAAGCGCCAACTCTT 59.398 47.619 2.29 0.00 0.00 2.85
2576 3843 1.226746 GTGTGTAAAGCGCCAACTCT 58.773 50.000 2.29 0.00 0.00 3.24
2577 3844 0.237498 GGTGTGTAAAGCGCCAACTC 59.763 55.000 2.29 1.41 36.58 3.01
2578 3845 0.464735 TGGTGTGTAAAGCGCCAACT 60.465 50.000 2.29 0.00 42.74 3.16
2579 3846 0.040425 CTGGTGTGTAAAGCGCCAAC 60.040 55.000 2.29 0.00 44.67 3.77
2580 3847 1.791103 GCTGGTGTGTAAAGCGCCAA 61.791 55.000 2.29 0.00 44.67 4.52
2581 3848 2.258013 GCTGGTGTGTAAAGCGCCA 61.258 57.895 2.29 0.00 43.38 5.69
2582 3849 1.791103 TTGCTGGTGTGTAAAGCGCC 61.791 55.000 2.29 0.00 39.88 6.53
2583 3850 0.030101 TTTGCTGGTGTGTAAAGCGC 59.970 50.000 0.00 0.00 39.88 5.92
2597 3864 1.067516 GTGCCTGTGATGTGTTTTGCT 59.932 47.619 0.00 0.00 0.00 3.91
2598 3865 1.202394 TGTGCCTGTGATGTGTTTTGC 60.202 47.619 0.00 0.00 0.00 3.68
2599 3866 2.867287 TGTGCCTGTGATGTGTTTTG 57.133 45.000 0.00 0.00 0.00 2.44
2600 3867 2.030893 CGATGTGCCTGTGATGTGTTTT 60.031 45.455 0.00 0.00 0.00 2.43
2601 3868 1.536766 CGATGTGCCTGTGATGTGTTT 59.463 47.619 0.00 0.00 0.00 2.83
2602 3869 1.159285 CGATGTGCCTGTGATGTGTT 58.841 50.000 0.00 0.00 0.00 3.32
2603 3870 0.321346 TCGATGTGCCTGTGATGTGT 59.679 50.000 0.00 0.00 0.00 3.72
2604 3871 1.004595 CTCGATGTGCCTGTGATGTG 58.995 55.000 0.00 0.00 0.00 3.21
2605 3872 0.742281 GCTCGATGTGCCTGTGATGT 60.742 55.000 0.00 0.00 0.00 3.06
2606 3873 0.461516 AGCTCGATGTGCCTGTGATG 60.462 55.000 0.00 0.00 0.00 3.07
2607 3874 0.251354 AAGCTCGATGTGCCTGTGAT 59.749 50.000 0.00 0.00 0.00 3.06
2608 3875 0.671472 CAAGCTCGATGTGCCTGTGA 60.671 55.000 0.00 0.00 0.00 3.58
2609 3876 0.671472 TCAAGCTCGATGTGCCTGTG 60.671 55.000 0.00 0.00 0.00 3.66
2621 3888 3.631145 TGCTGTGTTCATTTCAAGCTC 57.369 42.857 0.00 0.00 0.00 4.09
2629 3896 7.012704 GTCCTATATGTTGATGCTGTGTTCATT 59.987 37.037 0.00 0.00 0.00 2.57
2640 3907 5.163205 TGTTGAGGGGTCCTATATGTTGATG 60.163 44.000 0.00 0.00 31.76 3.07
2641 3908 4.975147 TGTTGAGGGGTCCTATATGTTGAT 59.025 41.667 0.00 0.00 31.76 2.57
2650 3917 3.587498 CCATATCTGTTGAGGGGTCCTA 58.413 50.000 0.00 0.00 31.76 2.94
2658 3925 3.624861 GCTTGACACCCATATCTGTTGAG 59.375 47.826 0.00 0.00 0.00 3.02
2659 3926 3.008923 TGCTTGACACCCATATCTGTTGA 59.991 43.478 0.00 0.00 0.00 3.18
2660 3927 3.346315 TGCTTGACACCCATATCTGTTG 58.654 45.455 0.00 0.00 0.00 3.33
2661 3928 3.009473 ACTGCTTGACACCCATATCTGTT 59.991 43.478 0.00 0.00 0.00 3.16
2662 3929 2.573462 ACTGCTTGACACCCATATCTGT 59.427 45.455 0.00 0.00 0.00 3.41
2665 3932 2.939103 GTGACTGCTTGACACCCATATC 59.061 50.000 0.00 0.00 35.79 1.63
2670 3937 2.607892 GCGTGACTGCTTGACACCC 61.608 63.158 0.00 0.00 37.91 4.61
2686 3953 1.086067 AGATGATCTGGTTGCACGCG 61.086 55.000 3.53 3.53 0.00 6.01
2687 3954 0.654683 GAGATGATCTGGTTGCACGC 59.345 55.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.